Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974320 | XP_039690939.1 | 100.000 | 92 | 0 | 0 | 46 | 137 | 1 | 92 | 1.42e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974320 | sp|Q9LJX1|PRE5_ARATH | 76.923 | 91 | 20 | 1 | 46 | 135 | 1 | 91 | 1.13e-40 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974320 | A0A072UGS5 | 100.000 | 92 | 0 | 0 | 46 | 137 | 1 | 92 | 6.78e-55 | 176 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0974320 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0871710 | Msa0974320 | 0.837653 | 4.577247e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974320 | MtrunA17_Chr6g0453041 | 100.000 | 92 | 0 | 0 | 46 | 137 | 1 | 92 | 1.31e-58 | 176 |
| Msa0974320 | MtrunA17_Chr7g0217141 | 84.946 | 93 | 13 | 1 | 46 | 137 | 1 | 93 | 1.87e-46 | 145 |
| Msa0974320 | MtrunA17_Chr5g0416431 | 68.421 | 76 | 24 | 0 | 60 | 135 | 17 | 92 | 1.93e-32 | 110 |
| Msa0974320 | MtrunA17_Chr8g0362131 | 69.880 | 83 | 24 | 1 | 53 | 135 | 10 | 91 | 4.91e-32 | 109 |
| Msa0974320 | MtrunA17_Chr3g0093001 | 73.077 | 78 | 19 | 1 | 60 | 137 | 17 | 92 | 4.97e-32 | 109 |
| Msa0974320 | MtrunA17_Chr7g0237771 | 49.351 | 77 | 36 | 1 | 46 | 122 | 1 | 74 | 1.45e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974320 | AT3G28857.1 | 76.923 | 91 | 20 | 1 | 46 | 135 | 1 | 91 | 1.14e-41 | 134 |
| Msa0974320 | AT5G39860.1 | 76.923 | 78 | 17 | 1 | 59 | 135 | 14 | 91 | 7.03e-35 | 116 |
| Msa0974320 | AT1G26945.1 | 77.333 | 75 | 17 | 0 | 62 | 136 | 19 | 93 | 1.64e-34 | 115 |
| Msa0974320 | AT5G15160.1 | 72.368 | 76 | 20 | 1 | 62 | 136 | 18 | 93 | 7.67e-32 | 108 |
| Msa0974320 | AT1G74500.1 | 67.089 | 79 | 23 | 2 | 60 | 137 | 17 | 93 | 1.13e-28 | 100 |
| Msa0974320 | AT3G47710.1 | 61.702 | 94 | 32 | 3 | 46 | 137 | 1 | 92 | 5.16e-28 | 99.4 |
Find 33 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAAGCTTATTGATTAATT+AGG | 0.226540 | 6_4:+7282776 | None:intergenic |
| ATTTAACAAGTGATACATTT+TGG | 0.241523 | 6_4:+7282547 | None:intergenic |
| TGAAAGATTATCTCAGTTAT+TGG | 0.286390 | 6_4:-7282842 | Msa0974320:CDS |
| CTTGTTAAATCTATTAATTA+AGG | 0.323166 | 6_4:-7282534 | Msa0974320:three_prime_UTR |
| TGTAGTTGCAAGTCTCTTGT+AGG | 0.341927 | 6_4:+7282899 | None:intergenic |
| AATATGACACATGGATATAT+AGG | 0.392084 | 6_4:+7282579 | None:intergenic |
| AGGAACAAGTTGACGTAACT+TGG | 0.402465 | 6_4:+7285096 | None:intergenic |
| CGTCCATGCTTCAGCTCCAT+TGG | 0.402962 | 6_4:+7288994 | None:intergenic |
| CCATGTGTCATATTTATAGA+TGG | 0.409090 | 6_4:-7282570 | Msa0974320:three_prime_UTR |
| CGCTTCAGCTCCATTGGATC+GGG | 0.413804 | 6_4:+7289063 | None:intergenic |
| TGTGCAGGTATCAGCATCTA+AGG | 0.416549 | 6_4:-7282923 | Msa0974320:intron |
| ACGCTTCAGCTCCATTGGAT+CGG | 0.445787 | 6_4:+7289062 | None:intergenic |
| AATAGCATGTGATGACCTTA+AGG | 0.447592 | 6_4:-7289399 | Msa0974320:intron |
| CGTCCACGCTTCAGCTCCAT+TGG | 0.448482 | 6_4:+7289057 | None:intergenic |
| GCTGAAGCATGGACGATGTA+AGG | 0.469374 | 6_4:-7288986 | Msa0974320:intron |
| CACTCTTCAGCCCGATCCAA+TGG | 0.477578 | 6_4:-7289073 | Msa0974320:intron |
| TTGTTCCTGAGATTCGTCAT+AGG | 0.480384 | 6_4:-7285081 | Msa0974320:CDS |
| GTCCATGCTTCAGCTCCATT+GGG | 0.484569 | 6_4:+7288995 | None:intergenic |
| ACTCTATCAGATCTATCGTT+GGG | 0.496362 | 6_4:+7289024 | None:intergenic |
| GAACGCCTATGACGAATCTC+AGG | 0.525453 | 6_4:+7285076 | None:intergenic |
| TCGTCATAGGCGTTCAGATA+AGG | 0.525461 | 6_4:-7285068 | Msa0974320:intron |
| CTTCTGATAATATTAGCCTC+TGG | 0.544212 | 6_4:+7282799 | None:intergenic |
| GACTCTATCAGATCTATCGT+TGG | 0.547983 | 6_4:+7289023 | None:intergenic |
| GCTAGCTAGAGTGTAGTTTG+AGG | 0.561721 | 6_4:-7282676 | Msa0974320:three_prime_UTR |
| TACCCAATGGAGCTGAAGCA+TGG | 0.562928 | 6_4:-7288997 | Msa0974320:CDS |
| GTCATCACATGCTATTTCCA+TGG | 0.572175 | 6_4:+7289406 | None:intergenic |
| CCATCTATAAATATGACACA+TGG | 0.592729 | 6_4:+7282570 | None:intergenic |
| GATCCAATGGAGCTGAAGCG+TGG | 0.597392 | 6_4:-7289060 | Msa0974320:CDS |
| TATATATTATGTCTAGCAGA+AGG | 0.605924 | 6_4:-7285177 | Msa0974320:CDS |
| TGATAGAGTCGGATACCCAA+TGG | 0.620693 | 6_4:-7289010 | Msa0974320:CDS |
| AACGATAGATCTGATAGAGT+CGG | 0.624474 | 6_4:-7289021 | Msa0974320:CDS |
| TTATGTCTAGCAGAAGGTCA+AGG | 0.634096 | 6_4:-7285171 | Msa0974320:CDS |
| AATTGATGCTGATAGTCCAG+AGG | 0.714162 | 6_4:-7282815 | Msa0974320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTAAAAAAAAAAATAT+AGG | - | chr6_4:7287040-7287059 | Msa0974320:intron | 0.0% |
| !!! | AAAGAGTATATTTAAAATAT+TGG | - | chr6_4:7283244-7283263 | Msa0974320:intron | 10.0% |
| !!! | AAGAGTATATTTAAAATATT+GGG | - | chr6_4:7283245-7283264 | Msa0974320:intron | 10.0% |
| !!! | ATATACATATCTATTTTTAA+AGG | - | chr6_4:7285890-7285909 | Msa0974320:intron | 10.0% |
| !! | AAAAGAAAAAAAAAGAAATA+GGG | - | chr6_4:7286129-7286148 | Msa0974320:intron | 10.0% |
| !!! | TATTTTATAGACAAATATTT+GGG | + | chr6_4:7286281-7286300 | None:intergenic | 10.0% |
| !!! | TTATTTTATAGACAAATATT+TGG | + | chr6_4:7286282-7286301 | None:intergenic | 10.0% |
| !!! | TTATATTTTTCATATATAAC+TGG | - | chr6_4:7286985-7287004 | Msa0974320:intron | 10.0% |
| !! | AAGAAATTAACATAATATTA+TGG | - | chr6_4:7287111-7287130 | Msa0974320:intron | 10.0% |
| !! | AGAAATTAACATAATATTAT+GGG | - | chr6_4:7287112-7287131 | Msa0974320:intron | 10.0% |
| !! | TCATAATAATATATAGTAAA+TGG | - | chr6_4:7287163-7287182 | Msa0974320:intron | 10.0% |
| !! | AAAAATTAATTTAACTCATA+CGG | - | chr6_4:7287207-7287226 | Msa0974320:intron | 10.0% |
| !!! | TTTTATTCATTTATTTACTT+TGG | + | chr6_4:7288581-7288600 | None:intergenic | 10.0% |
| !! | TATATAAGAATTTATGAATA+TGG | - | chr6_4:7288812-7288831 | Msa0974320:intron | 10.0% |
| !!! | TATTTTAAATTTACATGAGA+CGG | + | chr6_4:7283171-7283190 | None:intergenic | 15.0% |
| !!! | AGAGTATATTTAAAATATTG+GGG | - | chr6_4:7283246-7283265 | Msa0974320:intron | 15.0% |
| !!! | CTTATGATTGAAAATTTTAT+CGG | - | chr6_4:7283330-7283349 | Msa0974320:intron | 15.0% |
| !!! | TAATTTTTGATGTATTTAGT+TGG | + | chr6_4:7283579-7283598 | None:intergenic | 15.0% |
| !! | ACTATTAATCATTATTAATC+AGG | + | chr6_4:7283746-7283765 | None:intergenic | 15.0% |
| !! | AAAAAGACTCAATATATTAA+AGG | - | chr6_4:7283814-7283833 | Msa0974320:intron | 15.0% |
| !!! | TATATTTTGAATATTGTACT+AGG | + | chr6_4:7283859-7283878 | None:intergenic | 15.0% |
| !! | ACTAAAAAAGTTGTATAATT+AGG | - | chr6_4:7283921-7283940 | Msa0974320:intron | 15.0% |
| !!! | TATAATTAGGTTTTCATATT+TGG | - | chr6_4:7283934-7283953 | Msa0974320:intron | 15.0% |
| !! | AAGATAGTTATTTAATAACA+TGG | - | chr6_4:7284650-7284669 | Msa0974320:intron | 15.0% |
| !!! | TTTTTATATGTTTCCAATTT+GGG | + | chr6_4:7285074-7285093 | None:intergenic | 15.0% |
| !!! | TTTTTTATATGTTTCCAATT+TGG | + | chr6_4:7285075-7285094 | None:intergenic | 15.0% |
| !!! | TGTAATTTTTGTTAAAATTG+AGG | - | chr6_4:7285392-7285411 | Msa0974320:intron | 15.0% |
| !!! | TACTTTTTAAAGTTAGATTT+CGG | - | chr6_4:7285824-7285843 | Msa0974320:intron | 15.0% |
| !! | GAAAAGAAAAAAAAAGAAAT+AGG | - | chr6_4:7286128-7286147 | Msa0974320:intron | 15.0% |
| !!! | AATTAATTGGTTTATTTTGT+TGG | + | chr6_4:7286593-7286612 | None:intergenic | 15.0% |
| !! | AAAAACTAACATAAAAACTA+AGG | + | chr6_4:7286858-7286877 | None:intergenic | 15.0% |
| !!! | TTAGTTTTTATGTTAGTTTT+TGG | - | chr6_4:7286857-7286876 | Msa0974320:intron | 15.0% |
| !!! | TAGTTTTTATGTTAGTTTTT+GGG | - | chr6_4:7286858-7286877 | Msa0974320:intron | 15.0% |
| !! | ACATGTTATTATATATACAT+AGG | - | chr6_4:7286961-7286980 | Msa0974320:intron | 15.0% |
| !! | CATGTTATTATATATACATA+GGG | - | chr6_4:7286962-7286981 | Msa0974320:intron | 15.0% |
| !!! | AAACTAAAAAGAATAACTTT+TGG | + | chr6_4:7287713-7287732 | None:intergenic | 15.0% |
| !! | AAATAAATTTGTGCAATTTA+CGG | + | chr6_4:7287862-7287881 | None:intergenic | 15.0% |
| !! | TAAAATAATGTTCATACTTA+GGG | + | chr6_4:7288505-7288524 | None:intergenic | 15.0% |
| !! | ATAAAATAATGTTCATACTT+AGG | + | chr6_4:7288506-7288525 | None:intergenic | 15.0% |
| !! | AAAAAAAATCAAAACTAGAA+TGG | + | chr6_4:7288661-7288680 | None:intergenic | 15.0% |
| !!! | TCTAGTTTTGATTTTTTTTT+TGG | - | chr6_4:7288662-7288681 | Msa0974320:intron | 15.0% |
| !! | ATAATATAATGTAAGATTTG+GGG | + | chr6_4:7288706-7288725 | None:intergenic | 15.0% |
| !! | CATAATATAATGTAAGATTT+GGG | + | chr6_4:7288707-7288726 | None:intergenic | 15.0% |
| !!! | TTTGATTAGTTACATAAAAA+TGG | - | chr6_4:7288772-7288791 | Msa0974320:intron | 15.0% |
| !! | CTTGTTAAATCTATTAATTA+AGG | - | chr6_4:7289350-7289369 | Msa0974320:intron | 15.0% |
| !!! | TAGTTTTTTAAGGATAAGTT+AGG | + | chr6_4:7282659-7282678 | None:intergenic | 20.0% |
| !!! | AGGTACAAATTAGTTTTTTA+AGG | + | chr6_4:7282669-7282688 | None:intergenic | 20.0% |
| !! | TTTGAGAAGAGTTTATAAAA+AGG | + | chr6_4:7283027-7283046 | None:intergenic | 20.0% |
| !! | TAAATATACTCTTTGTAGTT+GGG | + | chr6_4:7283238-7283257 | None:intergenic | 20.0% |
| !! | TTAAATATACTCTTTGTAGT+TGG | + | chr6_4:7283239-7283258 | None:intergenic | 20.0% |
| !!! | CGATAAAATTTTCAATCATA+AGG | + | chr6_4:7283332-7283351 | None:intergenic | 20.0% |
| !!! | ACAATTTTTGCTTATAAGAA+AGG | + | chr6_4:7283365-7283384 | None:intergenic | 20.0% |
| !! | CTTGGTTTATTTAAAAAGAA+TGG | + | chr6_4:7283479-7283498 | None:intergenic | 20.0% |
| !! | TCTCACATATAATAAAGATA+AGG | + | chr6_4:7284007-7284026 | None:intergenic | 20.0% |
| !!! | TGAGACTTAATTTCTTTTTT+TGG | - | chr6_4:7284022-7284041 | Msa0974320:intron | 20.0% |
| !! | AAAATGAGTTTATCAAAAAG+TGG | + | chr6_4:7284196-7284215 | None:intergenic | 20.0% |
| !! | ATCTTATCTTTATCTTATGT+AGG | - | chr6_4:7284218-7284237 | Msa0974320:intron | 20.0% |
| !! | CAATAATTTAATAAGTAGCA+CGG | - | chr6_4:7284496-7284515 | Msa0974320:intron | 20.0% |
| !!! | AACTGATCTTCTAAAATTAA+GGG | + | chr6_4:7284946-7284965 | None:intergenic | 20.0% |
| !!! | AAACTGATCTTCTAAAATTA+AGG | + | chr6_4:7284947-7284966 | None:intergenic | 20.0% |
| !!! | TTTTATATGTTTCCAATTTG+GGG | + | chr6_4:7285073-7285092 | None:intergenic | 20.0% |
| !! | TGCACTTAAAAAAATTGTTA+AGG | + | chr6_4:7285130-7285149 | None:intergenic | 20.0% |
| !! | ATTTGACCAAAAAAAATGAA+CGG | - | chr6_4:7285291-7285310 | Msa0974320:intron | 20.0% |
| !! | TCTAAACCAAATTAGATTAT+CGG | - | chr6_4:7285317-7285336 | Msa0974320:intron | 20.0% |
| !!! | AATTTTTGTTAAAATTGAGG+TGG | - | chr6_4:7285395-7285414 | Msa0974320:intron | 20.0% |
| !!! | TTTTTTTTCTCTCTTTCAAT+TGG | + | chr6_4:7285596-7285615 | None:intergenic | 20.0% |
| !!! | TAGTTTGCAAAATAAAAAAG+TGG | + | chr6_4:7285642-7285661 | None:intergenic | 20.0% |
| !!! | ACTTTTTAAAGTTAGATTTC+GGG | - | chr6_4:7285825-7285844 | Msa0974320:intron | 20.0% |
| !! | TAGATATGTATATATGTATG+TGG | + | chr6_4:7285883-7285902 | None:intergenic | 20.0% |
| !! | TTTGTCTATAAAATAATGAG+TGG | - | chr6_4:7286286-7286305 | Msa0974320:intron | 20.0% |
| !! | AGAAAGTAACAACAATTAAT+TGG | + | chr6_4:7286606-7286625 | None:intergenic | 20.0% |
| !! | GAAAAAGAAAATATTCATAG+TGG | + | chr6_4:7286936-7286955 | None:intergenic | 20.0% |
| !! | TTAACATAATATTATGGGTT+TGG | - | chr6_4:7287117-7287136 | Msa0974320:intron | 20.0% |
| !! | TAATATATAGTAAATGGTCA+AGG | - | chr6_4:7287169-7287188 | Msa0974320:intron | 20.0% |
| !! | AATATATAGTAAATGGTCAA+GGG | - | chr6_4:7287170-7287189 | Msa0974320:intron | 20.0% |
| !! | AGTAGTGTATACAAATAATA+TGG | + | chr6_4:7287369-7287388 | None:intergenic | 20.0% |
| !! | ATTATTTGTATACACTACTT+AGG | - | chr6_4:7287370-7287389 | Msa0974320:intron | 20.0% |
| !!! | ATTTTACCATTAAATTAGAG+AGG | + | chr6_4:7287467-7287486 | None:intergenic | 20.0% |
| !! | TTGTAATAAGCACTAATTAA+AGG | - | chr6_4:7287488-7287507 | Msa0974320:intron | 20.0% |
| !! | TTTCTTAAACAATGCTTTAA+GGG | - | chr6_4:7287730-7287749 | Msa0974320:intron | 20.0% |
| !! | ATACTAATATATCCCTTAAA+AGG | - | chr6_4:7287772-7287791 | Msa0974320:intron | 20.0% |
| !!! | AACATTTTTCAACCTTTTAA+GGG | + | chr6_4:7287787-7287806 | None:intergenic | 20.0% |
| !!! | TAACATTTTTCAACCTTTTA+AGG | + | chr6_4:7287788-7287807 | None:intergenic | 20.0% |
| !!! | GCACAAATTTATTTTATCAA+AGG | - | chr6_4:7287868-7287887 | Msa0974320:intron | 20.0% |
| !! | TAGAAATATATCTAAGAACT+TGG | - | chr6_4:7288088-7288107 | Msa0974320:intron | 20.0% |
| !!! | TAATAATGAGAAACGTTTTT+TGG | - | chr6_4:7288231-7288250 | Msa0974320:intron | 20.0% |
| !!! | AAGGTTTTAAAGGTAAAAAA+AGG | - | chr6_4:7288340-7288359 | Msa0974320:intron | 20.0% |
| !! | ATACAACTACAATAAAATCA+TGG | - | chr6_4:7288524-7288543 | Msa0974320:intron | 20.0% |
| !!! | AGTTTTGATTTTTTTTTTGG+TGG | - | chr6_4:7288665-7288684 | Msa0974320:intron | 20.0% |
| !! | GCATAATATAATGTAAGATT+TGG | + | chr6_4:7288708-7288727 | None:intergenic | 20.0% |
| !!! | CTAAAGCTTATTGATTAATT+AGG | + | chr6_4:7289111-7289130 | None:intergenic | 20.0% |
| !!! | ATTTAACAAGTGATACATTT+TGG | + | chr6_4:7289340-7289359 | None:intergenic | 20.0% |
| ! | TTGATATATAGATGATCGTT+AGG | - | chr6_4:7282589-7282608 | Msa0974320:three_prime_UTR | 25.0% |
| ! | TCTCATGTTTATATATGTTG+AGG | - | chr6_4:7282697-7282716 | Msa0974320:three_prime_UTR | 25.0% |
| ! | ATTTGAATCATCATTGTTAG+CGG | + | chr6_4:7283092-7283111 | None:intergenic | 25.0% |
| !!! | ATACAAGAAAGTGGATTATT+AGG | - | chr6_4:7283442-7283461 | Msa0974320:intron | 25.0% |
| ! | AAAAATGATCAATCTCTTGA+AGG | + | chr6_4:7283531-7283550 | None:intergenic | 25.0% |
| !! | GAAAAGTATGTATAACTGAT+TGG | + | chr6_4:7283681-7283700 | None:intergenic | 25.0% |
| !! | TTTTAATATCGTACTAGTCA+TGG | + | chr6_4:7283777-7283796 | None:intergenic | 25.0% |
| !!! | ATTGCCCTTTATTTTTGTTA+GGG | + | chr6_4:7284480-7284499 | None:intergenic | 25.0% |
| !!! | TATTGCCCTTTATTTTTGTT+AGG | + | chr6_4:7284481-7284500 | None:intergenic | 25.0% |
| ! | TGACTTGAATGTCTTTAATT+AGG | + | chr6_4:7284680-7284699 | None:intergenic | 25.0% |
| ! | TGTATTTAAGCTAACAAAGT+GGG | + | chr6_4:7285018-7285037 | None:intergenic | 25.0% |
| ! | ATGTATTTAAGCTAACAAAG+TGG | + | chr6_4:7285019-7285038 | None:intergenic | 25.0% |
| ! | AAGTTCACACATTTAAATGT+GGG | + | chr6_4:7285258-7285277 | None:intergenic | 25.0% |
| !! | GATAATCTAATTTGGTTTAG+AGG | + | chr6_4:7285318-7285337 | None:intergenic | 25.0% |
| ! | GAGAGAAAAAAAATTGTGAA+TGG | - | chr6_4:7285603-7285622 | Msa0974320:intron | 25.0% |
| ! | TAATATATGAGTAGACAACT+CGG | - | chr6_4:7286023-7286042 | Msa0974320:intron | 25.0% |
| ! | AAGAATATAATGTAAGTACG+AGG | - | chr6_4:7286157-7286176 | Msa0974320:intron | 25.0% |
| !!! | TGGGTGTTATTTTAGTTTAA+GGG | + | chr6_4:7286262-7286281 | None:intergenic | 25.0% |
| !!! | TTGGGTGTTATTTTAGTTTA+AGG | + | chr6_4:7286263-7286282 | None:intergenic | 25.0% |
| !! | ACAAACTAGACCAATATTTT+AGG | - | chr6_4:7286316-7286335 | Msa0974320:intron | 25.0% |
| ! | CATAATATATACCTAGATGT+TGG | + | chr6_4:7286698-7286717 | None:intergenic | 25.0% |
| ! | TATATATTATGTCTAGCAGA+AGG | - | chr6_4:7286707-7286726 | Msa0974320:intron | 25.0% |
| ! | AAATATTCATAGTGGTCTAA+GGG | + | chr6_4:7286928-7286947 | None:intergenic | 25.0% |
| ! | AAAATATTCATAGTGGTCTA+AGG | + | chr6_4:7286929-7286948 | None:intergenic | 25.0% |
| !! | TTTTTCATATATAACTGGCT+AGG | - | chr6_4:7286990-7287009 | Msa0974320:intron | 25.0% |
| ! | AACCAAGTTTAAATTTGGAA+GGG | - | chr6_4:7287070-7287089 | Msa0974320:intron | 25.0% |
| ! | AATGCTCTTTAAATTTGAAG+AGG | + | chr6_4:7287311-7287330 | None:intergenic | 25.0% |
| ! | TATATTATGTAAGGACCTTA+CGG | + | chr6_4:7287573-7287592 | None:intergenic | 25.0% |
| !! | AATAACTTTTGGATATGAAG+TGG | + | chr6_4:7287702-7287721 | None:intergenic | 25.0% |
| ! | GTTTCTTAAACAATGCTTTA+AGG | - | chr6_4:7287729-7287748 | Msa0974320:intron | 25.0% |
| !!! | ATTCTTAACACGTGTTTTAA+GGG | + | chr6_4:7287818-7287837 | None:intergenic | 25.0% |
| !! | AATTCTTAACACGTGTTTTA+AGG | + | chr6_4:7287819-7287838 | None:intergenic | 25.0% |
| ! | AGTGAGTATAAAACTTTGTT+GGG | + | chr6_4:7287999-7288018 | None:intergenic | 25.0% |
| ! | TAGTGAGTATAAAACTTTGT+TGG | + | chr6_4:7288000-7288019 | None:intergenic | 25.0% |
| ! | TCTCTTGGTCTAAAAAAAAA+TGG | - | chr6_4:7288021-7288040 | Msa0974320:intron | 25.0% |
| ! | CTATAATAATATAGGCTTGT+AGG | + | chr6_4:7288071-7288090 | None:intergenic | 25.0% |
| !!! | TTTAAAACCTTTTCCTTTCT+GGG | + | chr6_4:7288331-7288350 | None:intergenic | 25.0% |
| !! | TGTACAAACACATCAATTTT+TGG | - | chr6_4:7288453-7288472 | Msa0974320:intron | 25.0% |
| ! | TAAGAATTTATGAATATGGC+AGG | - | chr6_4:7288816-7288835 | Msa0974320:intron | 25.0% |
| ! | TGAAAGATTATCTCAGTTAT+TGG | - | chr6_4:7289042-7289061 | Msa0974320:CDS | 25.0% |
| !!! | AGAGTGTACTTTATTTTAGA+TGG | - | chr6_4:7289185-7289204 | Msa0974320:intron | 25.0% |
| !!! | GAGTGTACTTTATTTTAGAT+GGG | - | chr6_4:7289186-7289205 | Msa0974320:intron | 25.0% |
| ! | AATATGACACATGGATATAT+AGG | + | chr6_4:7289308-7289327 | None:intergenic | 25.0% |
| TGTCACATGTTATTACCTTA+AGG | + | chr6_4:7282503-7282522 | None:intergenic | 30.0% | |
| ! | TATATCAACTAGTTGAGTTG+AGG | + | chr6_4:7282577-7282596 | None:intergenic | 30.0% |
| TATATCATGTCACGAAAATC+AGG | - | chr6_4:7282955-7282974 | Msa0974320:intron | 30.0% | |
| ATATCATGTCACGAAAATCA+GGG | - | chr6_4:7282956-7282975 | Msa0974320:intron | 30.0% | |
| GAGAAGAGTTTATAAAAAGG+AGG | + | chr6_4:7283024-7283043 | None:intergenic | 30.0% | |
| CACACTCAATACAATGATAA+CGG | + | chr6_4:7283200-7283219 | None:intergenic | 30.0% | |
| CTAACAACTTGAATACATTG+AGG | + | chr6_4:7283290-7283309 | None:intergenic | 30.0% | |
| !! | GTATTCAAGTTGTTAGATGA+AGG | - | chr6_4:7283294-7283313 | Msa0974320:intron | 30.0% |
| GCAAAAATTGTATTCAAACG+AGG | - | chr6_4:7283374-7283393 | Msa0974320:intron | 30.0% | |
| GTGAGAAAACCTAATACAAT+AGG | - | chr6_4:7283403-7283422 | Msa0974320:intron | 30.0% | |
| TTCTTGTATTCAATGTGTCT+GGG | + | chr6_4:7283431-7283450 | None:intergenic | 30.0% | |
| TTTCTTGTATTCAATGTGTC+TGG | + | chr6_4:7283432-7283451 | None:intergenic | 30.0% | |
| ACACATTGAATACAAGAAAG+TGG | - | chr6_4:7283433-7283452 | Msa0974320:intron | 30.0% | |
| GTATGTATAACTGATTGGAA+TGG | + | chr6_4:7283676-7283695 | None:intergenic | 30.0% | |
| ! | TATATAGTGTTGAACATGAG+AGG | + | chr6_4:7284052-7284071 | None:intergenic | 30.0% |
| CATATAAATGATGTGTAACC+CGG | - | chr6_4:7284088-7284107 | Msa0974320:intron | 30.0% | |
| !!! | CCTTACAAGTTGATTTTGTA+AGG | + | chr6_4:7284164-7284183 | None:intergenic | 30.0% |
| CCTTACAAAATCAACTTGTA+AGG | - | chr6_4:7284161-7284180 | Msa0974320:intron | 30.0% | |
| TTTATCTTATGTAGGAGACT+TGG | - | chr6_4:7284226-7284245 | Msa0974320:intron | 30.0% | |
| !!! | AAACGCTATGGACAATTTTT+TGG | + | chr6_4:7284259-7284278 | None:intergenic | 30.0% |
| TCCTCGAATATGATTATCTT+CGG | - | chr6_4:7284285-7284304 | Msa0974320:intron | 30.0% | |
| AATCCATTTCCAAGATAAAC+TGG | - | chr6_4:7284429-7284448 | Msa0974320:intron | 30.0% | |
| TGTGTCCCTAACAAAAATAA+AGG | - | chr6_4:7284472-7284491 | Msa0974320:intron | 30.0% | |
| GTGTCCCTAACAAAAATAAA+GGG | - | chr6_4:7284473-7284492 | Msa0974320:intron | 30.0% | |
| AAGCAAGTGAATCTAAAAAG+GGG | + | chr6_4:7284539-7284558 | None:intergenic | 30.0% | |
| CAAGCAAGTGAATCTAAAAA+GGG | + | chr6_4:7284540-7284559 | None:intergenic | 30.0% | |
| ACAAGCAAGTGAATCTAAAA+AGG | + | chr6_4:7284541-7284560 | None:intergenic | 30.0% | |
| TTAGGGTACAATTAATTACG+TGG | - | chr6_4:7284883-7284902 | Msa0974320:intron | 30.0% | |
| GAAGATCAGTTTCCTATATA+TGG | - | chr6_4:7284955-7284974 | Msa0974320:intron | 30.0% | |
| TAAGTGCATACTTAGATCAA+CGG | - | chr6_4:7285142-7285161 | Msa0974320:CDS | 30.0% | |
| TATCAACTGAGTTAAGCTTA+CGG | + | chr6_4:7285178-7285197 | None:intergenic | 30.0% | |
| AGACAATGCATATTATATGC+AGG | - | chr6_4:7285199-7285218 | Msa0974320:intron | 30.0% | |
| GACAATGCATATTATATGCA+GGG | - | chr6_4:7285200-7285219 | Msa0974320:intron | 30.0% | |
| ACAATGCATATTATATGCAG+GGG | - | chr6_4:7285201-7285220 | Msa0974320:intron | 30.0% | |
| AGTTCACACATTTAAATGTG+GGG | + | chr6_4:7285257-7285276 | None:intergenic | 30.0% | |
| GAAGTTCACACATTTAAATG+TGG | + | chr6_4:7285259-7285278 | None:intergenic | 30.0% | |
| AACTCACCGATAATCTAATT+TGG | + | chr6_4:7285326-7285345 | None:intergenic | 30.0% | |
| TAGGATGTTGCTAAGTAAAA+TGG | + | chr6_4:7286353-7286372 | None:intergenic | 30.0% | |
| TTGAAGCAAACAATTGCATT+GGG | + | chr6_4:7286388-7286407 | None:intergenic | 30.0% | |
| ! | TTTGAAGCAAACAATTGCAT+TGG | + | chr6_4:7286389-7286408 | None:intergenic | 30.0% |
| GAAGTAGAGTTAAAAGCTAT+AGG | + | chr6_4:7286511-7286530 | None:intergenic | 30.0% | |
| ACAAAAGACAAGCTATATAG+TGG | + | chr6_4:7286560-7286579 | None:intergenic | 30.0% | |
| AACCAAGAAGATACAAATGA+GGG | + | chr6_4:7286640-7286659 | None:intergenic | 30.0% | |
| TAACCAAGAAGATACAAATG+AGG | + | chr6_4:7286641-7286660 | None:intergenic | 30.0% | |
| AGAAAAATACACCAACATCT+AGG | - | chr6_4:7286684-7286703 | Msa0974320:intron | 30.0% | |
| CATCGAACCAAGTTTAAATT+TGG | - | chr6_4:7287065-7287084 | Msa0974320:intron | 30.0% | |
| GAACCAAGTTTAAATTTGGA+AGG | - | chr6_4:7287069-7287088 | Msa0974320:intron | 30.0% | |
| ACCAAGTTTAAATTTGGAAG+GGG | - | chr6_4:7287071-7287090 | Msa0974320:intron | 30.0% | |
| CATTAAATTAGAGAGGAGTA+TGG | + | chr6_4:7287460-7287479 | None:intergenic | 30.0% | |
| CATACTCCTCTCTAATTTAA+TGG | - | chr6_4:7287458-7287477 | Msa0974320:intron | 30.0% | |
| !! | ATTTTAGTAGTCTTACCGTA+AGG | - | chr6_4:7287555-7287574 | Msa0974320:intron | 30.0% |
| CATTTATGACACTTATTAGC+AGG | + | chr6_4:7287600-7287619 | None:intergenic | 30.0% | |
| ! | TTTTATACTCACTACTCTCT+TGG | - | chr6_4:7288006-7288025 | Msa0974320:intron | 30.0% |
| ! | TTAAAACCTTTTCCTTTCTG+GGG | + | chr6_4:7288330-7288349 | None:intergenic | 30.0% |
| !!! | CTTTAAAACCTTTTCCTTTC+TGG | + | chr6_4:7288332-7288351 | None:intergenic | 30.0% |
| !! | CAGAAAGGAAAAGGTTTTAA+AGG | - | chr6_4:7288330-7288349 | Msa0974320:intron | 30.0% |
| TGATAATCATATCTCGCTTT+AGG | - | chr6_4:7288613-7288632 | Msa0974320:intron | 30.0% | |
| AAATCAAAACTAGAATGGAC+CGG | + | chr6_4:7288656-7288675 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTTTTGGTGGTGTC+TGG | - | chr6_4:7288672-7288691 | Msa0974320:intron | 30.0% |
| !!! | TTTTTTTTTTGGTGGTGTCT+GGG | - | chr6_4:7288673-7288692 | Msa0974320:intron | 30.0% |
| ACTGACTAATTATATTGTGC+AGG | - | chr6_4:7288946-7288965 | Msa0974320:intron | 30.0% | |
| CCATCTATAAATATGACACA+TGG | + | chr6_4:7289317-7289336 | None:intergenic | 30.0% | |
| CCATGTGTCATATTTATAGA+TGG | - | chr6_4:7289314-7289333 | Msa0974320:intron | 30.0% | |
| AATAGCATGTGATGACCTTA+AGG | - | chr6_4:7282485-7282504 | Msa0974320:three_prime_UTR | 35.0% | |
| ATAAACATGAGACACTCTTC+AGG | + | chr6_4:7282689-7282708 | None:intergenic | 35.0% | |
| ACTCTATCAGATCTATCGTT+GGG | + | chr6_4:7282863-7282882 | None:intergenic | 35.0% | |
| AACGATAGATCTGATAGAGT+CGG | - | chr6_4:7282863-7282882 | Msa0974320:CDS | 35.0% | |
| ATGATATATCAGAGCCTATC+GGG | + | chr6_4:7282943-7282962 | None:intergenic | 35.0% | |
| CATGATATATCAGAGCCTAT+CGG | + | chr6_4:7282944-7282963 | None:intergenic | 35.0% | |
| !! | CGGTTTTGTAAGGATCAATT+AGG | + | chr6_4:7282982-7283001 | None:intergenic | 35.0% |
| GTATTTCTCACCATACAAGT+CGG | + | chr6_4:7283002-7283021 | None:intergenic | 35.0% | |
| AAATCCTATCTATCCGATGT+AGG | - | chr6_4:7283046-7283065 | Msa0974320:intron | 35.0% | |
| TCAAGTGTTTATCATGGTCT+TGG | + | chr6_4:7283497-7283516 | None:intergenic | 35.0% | |
| AGACCATGATAAACACTTGA+CGG | - | chr6_4:7283497-7283516 | Msa0974320:intron | 35.0% | |
| AATGATCAATCTCTTGAAGG+TGG | + | chr6_4:7283528-7283547 | None:intergenic | 35.0% | |
| TCAGAAAGTTTGTGGAAGAA+AGG | + | chr6_4:7283614-7283633 | None:intergenic | 35.0% | |
| TGATTGGAATGGATAGACAT+AGG | + | chr6_4:7283665-7283684 | None:intergenic | 35.0% | |
| ACTTGTTTACAACATGTCCA+AGG | + | chr6_4:7283718-7283737 | None:intergenic | 35.0% | |
| ACCGAAGATAATCATATTCG+AGG | + | chr6_4:7284289-7284308 | None:intergenic | 35.0% | |
| TTTGTTCTAGCATAATCGTG+GGG | + | chr6_4:7284350-7284369 | None:intergenic | 35.0% | |
| CTTTGTTCTAGCATAATCGT+GGG | + | chr6_4:7284351-7284370 | None:intergenic | 35.0% | |
| ACTTTGTTCTAGCATAATCG+TGG | + | chr6_4:7284352-7284371 | None:intergenic | 35.0% | |
| TCTATCACATGCTTCATCAA+TGG | - | chr6_4:7284376-7284395 | Msa0974320:intron | 35.0% | |
| AATTAAGGGCCAGTTTATCT+TGG | + | chr6_4:7284441-7284460 | None:intergenic | 35.0% | |
| ACAACTACGTGAGCAATTAA+GGG | + | chr6_4:7284455-7284474 | None:intergenic | 35.0% | |
| TCTAAAAAGGGGAACATTCA+TGG | + | chr6_4:7284528-7284547 | None:intergenic | 35.0% | |
| ATTCATAGCTCCAATGTTTC+TGG | + | chr6_4:7284844-7284863 | None:intergenic | 35.0% | |
| ATTGGAGCTATGAATCATGA+AGG | - | chr6_4:7284849-7284868 | Msa0974320:intron | 35.0% | |
| TTGGAGCTATGAATCATGAA+GGG | - | chr6_4:7284850-7284869 | Msa0974320:intron | 35.0% | |
| TGGAACTATGTGATTAGTAG+AGG | - | chr6_4:7284903-7284922 | Msa0974320:intron | 35.0% | |
| GGAACTATGTGATTAGTAGA+GGG | - | chr6_4:7284904-7284923 | Msa0974320:intron | 35.0% | |
| GTTTCCTATATATGGTCACA+TGG | - | chr6_4:7284963-7284982 | Msa0974320:intron | 35.0% | |
| TAATAGGGACATGTACATGA+AGG | - | chr6_4:7284992-7285011 | Msa0974320:intron | 35.0% | |
| ACTTCAAATCAACCCCAAAT+TGG | - | chr6_4:7285058-7285077 | Msa0974320:intron | 35.0% | |
| ATACTTAGATCAACGGTTCT+CGG | - | chr6_4:7285149-7285168 | Msa0974320:CDS | 35.0% | |
| ATCAACTGAGTTAAGCTTAC+GGG | + | chr6_4:7285177-7285196 | None:intergenic | 35.0% | |
| !!! | AGAGGACCGTTCATTTTTTT+TGG | + | chr6_4:7285300-7285319 | None:intergenic | 35.0% |
| GTTAACAAGTGTCTTAGAGA+TGG | - | chr6_4:7285990-7286009 | Msa0974320:intron | 35.0% | |
| GAGAGATGAGCCTAAAATAT+TGG | + | chr6_4:7286329-7286348 | None:intergenic | 35.0% | |
| TTGTACCCTTCCTTCATTTA+TGG | - | chr6_4:7286431-7286450 | Msa0974320:intron | 35.0% | |
| GAGATATAAAGGGAGAGAAA+GGG | + | chr6_4:7286458-7286477 | None:intergenic | 35.0% | |
| AGAGATATAAAGGGAGAGAA+AGG | + | chr6_4:7286459-7286478 | None:intergenic | 35.0% | |
| ! | TATATAGTGGAGAAAAGGAG+AGG | + | chr6_4:7286547-7286566 | None:intergenic | 35.0% |
| ! | CAAGCTATATAGTGGAGAAA+AGG | + | chr6_4:7286552-7286571 | None:intergenic | 35.0% |
| ACCCCTTCCAAATTTAAACT+TGG | + | chr6_4:7287075-7287094 | None:intergenic | 35.0% | |
| TCTTGAAGCTCATGAAAATC+AGG | - | chr6_4:7287281-7287300 | Msa0974320:intron | 35.0% | |
| GCAGGCATCTATATTATGTA+AGG | + | chr6_4:7287582-7287601 | None:intergenic | 35.0% | |
| TAGCAATAGCAACATAGTGT+AGG | - | chr6_4:7287955-7287974 | Msa0974320:intron | 35.0% | |
| AGCAATAGCAACATAGTGTA+GGG | - | chr6_4:7287956-7287975 | Msa0974320:intron | 35.0% | |
| TAACAGTCATGAGGTAATTG+TGG | - | chr6_4:7288374-7288393 | Msa0974320:intron | 35.0% | |
| !!! | TTTTTTTTTGGTGGTGTCTG+GGG | - | chr6_4:7288674-7288693 | Msa0974320:intron | 35.0% |
| TGAGCTTAGGTTAATTGGTA+GGG | + | chr6_4:7288736-7288755 | None:intergenic | 35.0% | |
| TATACTGTCCTTTGTCACAA+AGG | + | chr6_4:7288878-7288897 | None:intergenic | 35.0% | |
| ! | CTTCTGATAATATTAGCCTC+TGG | + | chr6_4:7289088-7289107 | None:intergenic | 35.0% |
| ! | TGAGGTGTGCAATTTTCATA+TGG | - | chr6_4:7289226-7289245 | Msa0974320:intron | 35.0% |
| !!! | ATATGGCGGGTATATTTTGA+AGG | - | chr6_4:7289243-7289262 | Msa0974320:intron | 35.0% |
| GACTCTATCAGATCTATCGT+TGG | + | chr6_4:7282864-7282883 | None:intergenic | 40.0% | |
| !! | CCATACAAGTCGGTTTTGTA+AGG | + | chr6_4:7282992-7283011 | None:intergenic | 40.0% |
| !! | CCTTACAAAACCGACTTGTA+TGG | - | chr6_4:7282989-7283008 | Msa0974320:intron | 40.0% |
| TAGTCCTACATCGGATAGAT+AGG | + | chr6_4:7283053-7283072 | None:intergenic | 40.0% | |
| AGTGGGATTTAGTCCTACAT+CGG | + | chr6_4:7283062-7283081 | None:intergenic | 40.0% | |
| ! | TTGTTAGCGGATAACACAGT+GGG | + | chr6_4:7283079-7283098 | None:intergenic | 40.0% |
| ! | ATTGTTAGCGGATAACACAG+TGG | + | chr6_4:7283080-7283099 | None:intergenic | 40.0% |
| ! | GTCTGGGATCCTATTGTATT+AGG | + | chr6_4:7283415-7283434 | None:intergenic | 40.0% |
| GACCATGATAAACACTTGAC+GGG | - | chr6_4:7283498-7283517 | Msa0974320:intron | 40.0% | |
| !! | CTGCTGTTTCAGAAAGTTTG+TGG | + | chr6_4:7283622-7283641 | None:intergenic | 40.0% |
| !! | CACAAACTTTCTGAAACAGC+AGG | - | chr6_4:7283620-7283639 | Msa0974320:intron | 40.0% |
| GAATGGATAGACATAGGTTG+GGG | + | chr6_4:7283659-7283678 | None:intergenic | 40.0% | |
| GGAATGGATAGACATAGGTT+GGG | + | chr6_4:7283660-7283679 | None:intergenic | 40.0% | |
| TGGAATGGATAGACATAGGT+TGG | + | chr6_4:7283661-7283680 | None:intergenic | 40.0% | |
| TTCCAAATTTCCCAAGTCCT+TGG | - | chr6_4:7283698-7283717 | Msa0974320:intron | 40.0% | |
| TACAACATGTCCAAGGACTT+GGG | + | chr6_4:7283711-7283730 | None:intergenic | 40.0% | |
| TTACAACATGTCCAAGGACT+TGG | + | chr6_4:7283712-7283731 | None:intergenic | 40.0% | |
| AAATGATGTGTAACCCGGAT+CGG | - | chr6_4:7284093-7284112 | Msa0974320:intron | 40.0% | |
| CGAGGATATGTTAAACGCTA+TGG | + | chr6_4:7284271-7284290 | None:intergenic | 40.0% | |
| CACAACTACGTGAGCAATTA+AGG | + | chr6_4:7284456-7284475 | None:intergenic | 40.0% | |
| CTAATAGTTGCATGCCATGT+CGG | - | chr6_4:7284780-7284799 | Msa0974320:intron | 40.0% | |
| TGCTCAATAGTATACCGACA+TGG | + | chr6_4:7284797-7284816 | None:intergenic | 40.0% | |
| !! | ATGAAGGGTGGTAGTGTTTT+AGG | - | chr6_4:7284865-7284884 | Msa0974320:intron | 40.0% |
| !! | TGAAGGGTGGTAGTGTTTTA+GGG | - | chr6_4:7284866-7284885 | Msa0974320:intron | 40.0% |
| AGGACCATGTGACCATATAT+AGG | + | chr6_4:7284970-7284989 | None:intergenic | 40.0% | |
| ATGTACATGTCCCTATTAGC+AGG | + | chr6_4:7284990-7285009 | None:intergenic | 40.0% | |
| TACATGACAAACCCTTCCTA+AGG | - | chr6_4:7285034-7285053 | Msa0974320:intron | 40.0% | |
| ! | GATTTGAAGTGCCTTAGGAA+GGG | + | chr6_4:7285048-7285067 | None:intergenic | 40.0% |
| ! | TGATTTGAAGTGCCTTAGGA+AGG | + | chr6_4:7285049-7285068 | None:intergenic | 40.0% |
| TCAACTGAGTTAAGCTTACG+GGG | + | chr6_4:7285176-7285195 | None:intergenic | 40.0% | |
| TGCATATTATATGCAGGGGT+CGG | - | chr6_4:7285205-7285224 | Msa0974320:intron | 40.0% | |
| ATATGAGTAGACAACTCGGT+TGG | - | chr6_4:7286027-7286046 | Msa0974320:intron | 40.0% | |
| AGGGACCATAAATGAAGGAA+GGG | + | chr6_4:7286439-7286458 | None:intergenic | 40.0% | |
| AAGGGACCATAAATGAAGGA+AGG | + | chr6_4:7286440-7286459 | None:intergenic | 40.0% | |
| GAGAAAGGGACCATAAATGA+AGG | + | chr6_4:7286444-7286463 | None:intergenic | 40.0% | |
| CTCCCTCATTTGTATCTTCT+TGG | - | chr6_4:7286635-7286654 | Msa0974320:intron | 40.0% | |
| TTATGTCTAGCAGAAGGTCA+AGG | - | chr6_4:7286713-7286732 | Msa0974320:intron | 40.0% | |
| ! | AGGAACAAGTTGACGTAACT+TGG | + | chr6_4:7286791-7286810 | None:intergenic | 40.0% |
| TTGTTCCTGAGATTCGTCAT+AGG | - | chr6_4:7286803-7286822 | Msa0974320:intron | 40.0% | |
| GGTCTAAGGGACATTATCAA+AGG | + | chr6_4:7286915-7286934 | None:intergenic | 40.0% | |
| AAATTTGGAAGGGGTAGTCT+AGG | - | chr6_4:7287080-7287099 | Msa0974320:intron | 40.0% | |
| AGATTGACCATGACATTGTC+TGG | + | chr6_4:7288118-7288137 | None:intergenic | 40.0% | |
| TGTCATGGTCAATCTTACGA+AGG | - | chr6_4:7288123-7288142 | Msa0974320:intron | 40.0% | |
| GTCATGGTCAATCTTACGAA+GGG | - | chr6_4:7288124-7288143 | Msa0974320:intron | 40.0% | |
| ! | GTCAATCTTACGAAGGGTAT+AGG | - | chr6_4:7288130-7288149 | Msa0974320:intron | 40.0% |
| CACATGATACATGTACGAGT+CGG | + | chr6_4:7288182-7288201 | None:intergenic | 40.0% | |
| GTGAGCTTAGGTTAATTGGT+AGG | + | chr6_4:7288737-7288756 | None:intergenic | 40.0% | |
| TGTAGTTGCAAGTCTCTTGT+AGG | + | chr6_4:7288988-7289007 | None:intergenic | 40.0% | |
| AATTGATGCTGATAGTCCAG+AGG | - | chr6_4:7289069-7289088 | Msa0974320:intron | 40.0% | |
| ! | GGTGTGCAATTTTCATATGG+CGG | - | chr6_4:7289229-7289248 | Msa0974320:intron | 40.0% |
| ! | GTGTGCAATTTTCATATGGC+GGG | - | chr6_4:7289230-7289249 | Msa0974320:intron | 40.0% |
| ACACCGTACATGGAGATACT+GGG | - | chr6_4:7282526-7282545 | Msa0974320:three_prime_UTR | 45.0% | |
| TGACCCAGTATCTCCATGTA+CGG | + | chr6_4:7282532-7282551 | None:intergenic | 45.0% | |
| ! | GTCCACGCTTTAGCTTCATT+GGG | + | chr6_4:7282633-7282652 | None:intergenic | 45.0% |
| GACTAAATCTCACCGAGTGT+TGG | - | chr6_4:7282771-7282790 | Msa0974320:exon | 45.0% | |
| TGATAGAGTCGGATACCCAA+TGG | - | chr6_4:7282874-7282893 | Msa0974320:CDS | 45.0% | |
| GACCCGTCAAGTGTTTATCA+TGG | + | chr6_4:7283503-7283522 | None:intergenic | 45.0% | |
| ! | GATAGACATAGGTTGGGGAA+GGG | + | chr6_4:7283654-7283673 | None:intergenic | 45.0% |
| GTCCAAGGACTTGGGAAATT+TGG | + | chr6_4:7283703-7283722 | None:intergenic | 45.0% | |
| GGGCCAGTTTATCTTGGAAA+TGG | + | chr6_4:7284435-7284454 | None:intergenic | 45.0% | |
| GACTCACTAGCCAGAAACAT+TGG | - | chr6_4:7284831-7284850 | Msa0974320:intron | 45.0% | |
| GAGCTATGAATCATGAAGGG+TGG | - | chr6_4:7284853-7284872 | Msa0974320:intron | 45.0% | |
| GTCACATGGTCCTGCTAATA+GGG | - | chr6_4:7284977-7284996 | Msa0974320:intron | 45.0% | |
| !! | GGGTTGATTTGAAGTGCCTT+AGG | + | chr6_4:7285053-7285072 | None:intergenic | 45.0% |
| CAACTGAGTTAAGCTTACGG+GGG | + | chr6_4:7285175-7285194 | None:intergenic | 45.0% | |
| GCATATTATATGCAGGGGTC+GGG | - | chr6_4:7285206-7285225 | Msa0974320:intron | 45.0% | |
| GGGGAAGTGAGATATATCCA+GGG | + | chr6_4:7285238-7285257 | None:intergenic | 45.0% | |
| TGGGGAAGTGAGATATATCC+AGG | + | chr6_4:7285239-7285258 | None:intergenic | 45.0% | |
| CAATTGCATTGGGAAAGCAG+TGG | + | chr6_4:7286378-7286397 | None:intergenic | 45.0% | |
| AAAAGGAGAGGAGGAATGGT+AGG | + | chr6_4:7286535-7286554 | None:intergenic | 45.0% | |
| ! | ATAGTGGAGAAAAGGAGAGG+AGG | + | chr6_4:7286544-7286563 | None:intergenic | 45.0% |
| TCGTCATAGGCGTTCAGATA+AGG | - | chr6_4:7286816-7286835 | Msa0974320:intron | 45.0% | |
| TGGTCAACCAGACAATGTCA+TGG | - | chr6_4:7288108-7288127 | Msa0974320:intron | 45.0% | |
| TGAATGGTGTGGGAACAGTT+TGG | + | chr6_4:7288157-7288176 | None:intergenic | 45.0% | |
| TATAACGCAGAACCCCAGAA+AGG | - | chr6_4:7288315-7288334 | Msa0974320:intron | 45.0% | |
| ACTGCACTGTAACAGTCATG+AGG | - | chr6_4:7288365-7288384 | Msa0974320:intron | 45.0% | |
| GGTCTCATATTATGTTCCGC+CGG | - | chr6_4:7288634-7288653 | Msa0974320:intron | 45.0% | |
| TCAAAACTAGAATGGACCGG+CGG | + | chr6_4:7288653-7288672 | None:intergenic | 45.0% | |
| CCTCGTGAGCTTAGGTTAAT+TGG | + | chr6_4:7288741-7288760 | None:intergenic | 45.0% | |
| CCAATTAACCTAAGCTCACG+AGG | - | chr6_4:7288738-7288757 | Msa0974320:intron | 45.0% | |
| TAACCTAAGCTCACGAGGAT+CGG | - | chr6_4:7288743-7288762 | Msa0974320:intron | 45.0% | |
| CCTTTGTCACAAAGGACTAG+TGG | + | chr6_4:7288870-7288889 | None:intergenic | 45.0% | |
| CCACTAGTCCTTTGTGACAA+AGG | - | chr6_4:7288867-7288886 | Msa0974320:intron | 45.0% | |
| TGTGCAGGTATCAGCATCTA+AGG | - | chr6_4:7288961-7288980 | Msa0974320:intron | 45.0% | |
| GCTAGCTAGAGTGTAGTTTG+AGG | - | chr6_4:7289208-7289227 | Msa0974320:intron | 45.0% | |
| !!! | CAATATTAAATTTTTATATT+AGG | - | chr6_4:7284128-7284147 | Msa0974320:intron | 5.0% |
| !!! | TATTTTTCTATTTATATATA+TGG | + | chr6_4:7286673-7286692 | None:intergenic | 5.0% |
| !!! | CAATAAATATTTTTTATTAA+TGG | - | chr6_4:7287909-7287928 | Msa0974320:intron | 5.0% |
| !!! | ATATATTTCTATAATAATAT+AGG | + | chr6_4:7288079-7288098 | None:intergenic | 5.0% |
| TGTGACACACACACCGTACA+TGG | - | chr6_4:7282516-7282535 | Msa0974320:three_prime_UTR | 50.0% | |
| CACACCGTACATGGAGATAC+TGG | - | chr6_4:7282525-7282544 | Msa0974320:three_prime_UTR | 50.0% | |
| GACCCAATGAAGCTAAAGCG+TGG | - | chr6_4:7282628-7282647 | Msa0974320:three_prime_UTR | 50.0% | |
| ! | CGTCCACGCTTTAGCTTCAT+TGG | + | chr6_4:7282634-7282653 | None:intergenic | 50.0% |
| GTGTGTTAACGGCCAACACT+CGG | + | chr6_4:7282786-7282805 | None:intergenic | 50.0% | |
| ! | AGAGTGAGGGGGTGTGTTAA+CGG | + | chr6_4:7282797-7282816 | None:intergenic | 50.0% |
| ACGCTTCAGCTCCATTGGAT+CGG | + | chr6_4:7282825-7282844 | None:intergenic | 50.0% | |
| TACCCAATGGAGCTGAAGCA+TGG | - | chr6_4:7282887-7282906 | Msa0974320:CDS | 50.0% | |
| GTCCATGCTTCAGCTCCATT+GGG | + | chr6_4:7282892-7282911 | None:intergenic | 50.0% | |
| GCTGAAGCATGGACGATGTA+AGG | - | chr6_4:7282898-7282917 | Msa0974320:CDS | 50.0% | |
| AGCACAACGATAGACCCGAT+AGG | - | chr6_4:7282926-7282945 | Msa0974320:intron | 50.0% | |
| ! | GGATAGACATAGGTTGGGGA+AGG | + | chr6_4:7283655-7283674 | None:intergenic | 50.0% |
| ! | TGTATTAGAGTGCGCCGATC+CGG | + | chr6_4:7284110-7284129 | None:intergenic | 50.0% |
| GGTCACATGGTCCTGCTAAT+AGG | - | chr6_4:7284976-7284995 | Msa0974320:intron | 50.0% | |
| GGAGAAAAGGAGAGGAGGAA+TGG | + | chr6_4:7286539-7286558 | None:intergenic | 50.0% | |
| GAACGCCTATGACGAATCTC+AGG | + | chr6_4:7286811-7286830 | None:intergenic | 50.0% | |
| !! | TCATACGGCAGAGCTTTGAG+TGG | - | chr6_4:7287222-7287241 | Msa0974320:intron | 50.0% |
| CATGTACGAGTCGGTGTGAA+TGG | + | chr6_4:7288173-7288192 | None:intergenic | 50.0% | |
| GCAGAACCCCAGAAAGGAAA+AGG | - | chr6_4:7288321-7288340 | Msa0974320:intron | 50.0% | |
| TGGATCGGGCTGAAGAGTGA+GGG | + | chr6_4:7282810-7282829 | None:intergenic | 55.0% | |
| TTGGATCGGGCTGAAGAGTG+AGG | + | chr6_4:7282811-7282830 | None:intergenic | 55.0% | |
| CACTCTTCAGCCCGATCCAA+TGG | - | chr6_4:7282811-7282830 | Msa0974320:CDS | 55.0% | |
| CGCTTCAGCTCCATTGGATC+GGG | + | chr6_4:7282824-7282843 | None:intergenic | 55.0% | |
| GATCCAATGGAGCTGAAGCG+TGG | - | chr6_4:7282824-7282843 | Msa0974320:CDS | 55.0% | |
| CGTCCATGCTTCAGCTCCAT+TGG | + | chr6_4:7282893-7282912 | None:intergenic | 55.0% | |
| ! | GTATTAGAGTGCGCCGATCC+GGG | + | chr6_4:7284109-7284128 | None:intergenic | 55.0% |
| CATTGGGAAAGCAGTGGCGT+AGG | + | chr6_4:7286372-7286391 | None:intergenic | 55.0% | |
| CGAGTCGGTGTGAATGGTGT+GGG | + | chr6_4:7288167-7288186 | None:intergenic | 55.0% | |
| ACGAGTCGGTGTGAATGGTG+TGG | + | chr6_4:7288168-7288187 | None:intergenic | 55.0% | |
| GATCGGGCTGAAGAGTGAGG+GGG | + | chr6_4:7282808-7282827 | None:intergenic | 60.0% | |
| GGATCGGGCTGAAGAGTGAG+GGG | + | chr6_4:7282809-7282828 | None:intergenic | 60.0% | |
| CGTCCACGCTTCAGCTCCAT+TGG | + | chr6_4:7282830-7282849 | None:intergenic | 60.0% | |
| CGACCGATCCTCGTGAGCTT+AGG | + | chr6_4:7288749-7288768 | None:intergenic | 60.0% | |
| CAGGGGTCGGGTTTGAACCC+TGG | - | chr6_4:7285218-7285237 | Msa0974320:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 7282480 | 7289426 | 7282480 | ID=Msa0974320;Name=Msa0974320 |
| chr6_4 | mRNA | 7282480 | 7289426 | 7282480 | ID=Msa0974320-mRNA-1;Parent=Msa0974320;Name=Msa0974320-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.33|0.25|0.5|1|1|4|303|137 |
| chr6_4 | exon | 7282480 | 7282938 | 7282480 | ID=Msa0974320-mRNA-1:exon:2856;Parent=Msa0974320-mRNA-1 |
| chr6_4 | exon | 7285069 | 7285200 | 7285069 | ID=Msa0974320-mRNA-1:exon:2855;Parent=Msa0974320-mRNA-1 |
| chr6_4 | exon | 7288987 | 7289085 | 7288987 | ID=Msa0974320-mRNA-1:exon:2854;Parent=Msa0974320-mRNA-1 |
| chr6_4 | exon | 7289400 | 7289426 | 7289400 | ID=Msa0974320-mRNA-1:exon:2853;Parent=Msa0974320-mRNA-1 |
| chr6_4 | CDS | 7289400 | 7289426 | 7289400 | ID=Msa0974320-mRNA-1:cds;Parent=Msa0974320-mRNA-1 |
| chr6_4 | CDS | 7288987 | 7289085 | 7288987 | ID=Msa0974320-mRNA-1:cds;Parent=Msa0974320-mRNA-1 |
| chr6_4 | CDS | 7285069 | 7285200 | 7285069 | ID=Msa0974320-mRNA-1:cds;Parent=Msa0974320-mRNA-1 |
| chr6_4 | CDS | 7282783 | 7282938 | 7282783 | ID=Msa0974320-mRNA-1:cds;Parent=Msa0974320-mRNA-1 |
| chr6_4 | three_prime_UTR | 7282480 | 7282782 | 7282480 | ID=Msa0974320-mRNA-1:three_prime_utr;Parent=Msa0974320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
