AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0871710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871710 MtrunA17_Chr6g0453041 100.000 92 0 0 1 92 1 92 1.62e-59 176
Msa0871710 MtrunA17_Chr7g0217141 84.946 93 13 1 1 92 1 93 8.23e-48 147
Msa0871710 MtrunA17_Chr5g0416431 68.421 76 24 0 15 90 17 92 4.15e-33 110
Msa0871710 MtrunA17_Chr8g0362131 69.880 83 24 1 8 90 10 91 5.13e-33 109
Msa0871710 MtrunA17_Chr3g0093001 73.077 78 19 1 15 92 17 92 9.80e-33 108
Msa0871710 MtrunA17_Chr7g0237771 49.351 77 36 1 1 77 1 74 6.46e-13 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871710 AT3G28857.1 76.923 91 20 1 1 90 1 91 9.22e-43 134
Msa0871710 AT5G39860.1 75.000 80 19 1 12 90 12 91 3.48e-36 118
Msa0871710 AT1G26945.1 77.333 75 17 0 17 91 19 93 2.25e-35 116
Msa0871710 AT5G15160.1 72.368 76 20 1 17 91 18 93 5.23e-33 110
Msa0871710 AT1G74500.1 67.089 79 23 2 15 92 17 93 2.29e-29 100
Msa0871710 AT3G47710.1 61.702 94 32 3 1 92 1 92 7.58e-29 99.8

Find 44 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTCATTTGTATCTTCT+TGG 0.134498 6_1:+6756930 Msa0871710:five_prime_UTR
ATTTAACATGTGATACATTT+TGG 0.173152 6_1:-6759691 None:intergenic
TTGTACCCTTCCTTCATTTA+TGG 0.173413 6_1:+6756726 Msa0871710:five_prime_UTR
CTAAAGCTTATTGATTAATT+AGG 0.226540 6_1:-6759462 None:intergenic
AGAAAGTAACAACAATTAAT+TGG 0.254555 6_1:-6756898 None:intergenic
AAGTGATAAGAGAGATATAA+AGG 0.275102 6_1:-6756761 None:intergenic
TGAAAGATTATCTCAGTTAT+TGG 0.286390 6_1:+6759396 Msa0871710:CDS
TAGGATGTTGCTAAGTAAAA+TGG 0.319043 6_1:-6756645 None:intergenic
CATGTTAAATCTATTAATTA+AGG 0.325648 6_1:+6759704 Msa0871710:three_prime_UTR
TGTAGTTGCAAGTCTCTTGT+AGG 0.341927 6_1:-6759339 None:intergenic
GAGAGATGAGCCTAAAATAT+TGG 0.345392 6_1:-6756621 None:intergenic
AGAGATATAAAGGGAGAGAA+AGG 0.390071 6_1:-6756751 None:intergenic
AATATGACACATGGATATAT+AGG 0.392084 6_1:-6759659 None:intergenic
AGGAACAAGTTGACGTAACT+TGG 0.402465 6_1:-6757083 None:intergenic
CCATGTGTCATATTTATAGA+TGG 0.409090 6_1:+6759668 Msa0871710:three_prime_UTR
AGTGATAAGAGAGATATAAA+GGG 0.412697 6_1:-6756760 None:intergenic
TGTGCAGGTATCAGCATCTA+AGG 0.416549 6_1:+6759315 Msa0871710:intron
TTGAAGCAAACAATTGCATT+GGG 0.420570 6_1:-6756680 None:intergenic
CAAGCTATATAGTGGAGAAA+AGG 0.438595 6_1:-6756844 None:intergenic
TTTGAAGCAAACAATTGCAT+TGG 0.440035 6_1:-6756681 None:intergenic
GAAGTAGAGTTAAAAGCTAT+AGG 0.445526 6_1:-6756803 None:intergenic
AAAAGGAGAGGAGGAATGGT+AGG 0.449810 6_1:-6756827 None:intergenic
GGAGAAAAGGAGAGGAGGAA+TGG 0.452365 6_1:-6756831 None:intergenic
ACAAAAGACAAGCTATATAG+TGG 0.459591 6_1:-6756852 None:intergenic
TTGTTCCTGAGATTCGTCAT+AGG 0.480384 6_1:+6757098 Msa0871710:CDS
GAACGCCTATGACGAATCTC+AGG 0.525453 6_1:-6757103 None:intergenic
TCGTCATAGGCGTTCAGATA+AGG 0.525461 6_1:+6757111 Msa0871710:CDS
CTTCTGATAATATTAGCCTC+TGG 0.544212 6_1:-6759439 None:intergenic
GAGATATAAAGGGAGAGAAA+GGG 0.548125 6_1:-6756750 None:intergenic
TAACCAAGAAGATACAAATG+AGG 0.550806 6_1:-6756933 None:intergenic
CATTGGGAAAGCAGTGGCGT+AGG 0.572730 6_1:-6756664 None:intergenic
AAGGGACCATAAATGAAGGA+AGG 0.578025 6_1:-6756732 None:intergenic
GAGAAAGGGACCATAAATGA+AGG 0.578289 6_1:-6756736 None:intergenic
ATAGTGGAGAAAAGGAGAGG+AGG 0.581549 6_1:-6756836 None:intergenic
GCTGGCTAGAGTGTAGTTTG+AGG 0.586285 6_1:+6759562 Msa0871710:three_prime_UTR
CCATCTATAAATATGACACA+TGG 0.592729 6_1:-6759668 None:intergenic
TATATAGTGGAGAAAAGGAG+AGG 0.597974 6_1:-6756839 None:intergenic
CATAATATATACCTAGATGT+TGG 0.599785 6_1:-6756990 None:intergenic
AGGGACCATAAATGAAGGAA+GGG 0.600605 6_1:-6756731 None:intergenic
TATATATTATGTCTAGCAGA+AGG 0.605924 6_1:+6757002 Msa0871710:exon
AACCAAGAAGATACAAATGA+GGG 0.624359 6_1:-6756932 None:intergenic
TTATGTCTAGCAGAAGGTCA+AGG 0.634096 6_1:+6757008 Msa0871710:exon
CAATTGCATTGGGAAAGCAG+TGG 0.712328 6_1:-6756670 None:intergenic
AATTGATGCTGATAGTCCAG+AGG 0.714162 6_1:+6759423 Msa0871710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAAAAAAAAAATAT+AGG + chr6_1:6757336-6757355 Msa0871710:intron 0.0%
!! AAGAAATTAACATAATATTA+TGG + chr6_1:6757407-6757426 Msa0871710:intron 10.0%
!! AGAAATTAACATAATATTAT+GGG + chr6_1:6757408-6757427 Msa0871710:intron 10.0%
!! TCATAATAATATATAGTAAA+TGG + chr6_1:6757459-6757478 Msa0871710:intron 10.0%
!! AAAAATTAATTTAACTCATA+CGG + chr6_1:6757503-6757522 Msa0871710:intron 10.0%
!!! TTTTATTGATTTATTTACTT+TGG - chr6_1:6758869-6758888 None:intergenic 10.0%
!!! TTTTGATTAGTTAATAAAAA+TGG + chr6_1:6759059-6759078 Msa0871710:intron 10.0%
!! TTATTCATAATTTATGAATA+TGG + chr6_1:6759166-6759185 Msa0871710:intron 10.0%
!!! AATTAATTGGTTTATTTTGT+TGG - chr6_1:6756888-6756907 None:intergenic 15.0%
!! AAAAACTAACATAAAAACTA+AGG - chr6_1:6757153-6757172 None:intergenic 15.0%
!!! TTAGTTTTTATGTTAGTTTT+TGG + chr6_1:6757152-6757171 Msa0871710:intron 15.0%
!!! TAGTTTTTATGTTAGTTTTT+GGG + chr6_1:6757153-6757172 Msa0871710:intron 15.0%
!! ACATGTTATTATATATACAT+AGG + chr6_1:6757256-6757275 Msa0871710:intron 15.0%
!! CATGTTATTATATATACATA+GGG + chr6_1:6757257-6757276 Msa0871710:intron 15.0%
!!! AAACTAAAAAGAATAACTTT+TGG - chr6_1:6758009-6758028 None:intergenic 15.0%
!! AAATAAATTTGTGCAATTTA+CGG - chr6_1:6758159-6758178 None:intergenic 15.0%
!! TAAAATAATGTTCATACTTA+GGG - chr6_1:6758793-6758812 None:intergenic 15.0%
!! ATAAAATAATGTTCATACTT+AGG - chr6_1:6758794-6758813 None:intergenic 15.0%
!! CAAAATAAAAAAATCAAAAC+TGG - chr6_1:6758954-6758973 None:intergenic 15.0%
!!! GTTTTGATTTTTTTATTTTG+TGG + chr6_1:6758954-6758973 Msa0871710:intron 15.0%
!!! TTTTATTAACTAATCAAAAC+TGG - chr6_1:6759058-6759077 None:intergenic 15.0%
!! CATGTTAAATCTATTAATTA+AGG + chr6_1:6759704-6759723 Msa0871710:three_prime_UTR 15.0%
!! AGAAAGTAACAACAATTAAT+TGG - chr6_1:6756901-6756920 None:intergenic 20.0%
!! GAAAAAGAAAATATTCATAG+TGG - chr6_1:6757231-6757250 None:intergenic 20.0%
!!! TTTTTCATATATAACTAGCT+AGG + chr6_1:6757285-6757304 Msa0871710:intron 20.0%
!! TTAACATAATATTATGGGTT+TGG + chr6_1:6757413-6757432 Msa0871710:intron 20.0%
!! TAATATATAGTAAATGGTCA+AGG + chr6_1:6757465-6757484 Msa0871710:intron 20.0%
!! AATATATAGTAAATGGTCAA+GGG + chr6_1:6757466-6757485 Msa0871710:intron 20.0%
!! AGTAGTGTATACAAATAATA+TGG - chr6_1:6757665-6757684 None:intergenic 20.0%
!! ATTATTTGTATACACTACTT+AGG + chr6_1:6757666-6757685 Msa0871710:intron 20.0%
!!! ATTTTACCATAAAATTAGAG+AGG - chr6_1:6757763-6757782 None:intergenic 20.0%
!! TTGTAATAAGCACTAATTAA+AGG + chr6_1:6757784-6757803 Msa0871710:intron 20.0%
!! TTTCTTAAACAATGCTTTAA+GGG + chr6_1:6758026-6758045 Msa0871710:intron 20.0%
!! ATACTAATATATCCCTTAAA+AGG + chr6_1:6758068-6758087 Msa0871710:intron 20.0%
!!! AACATTTTTCAACCTTTTAA+GGG - chr6_1:6758083-6758102 None:intergenic 20.0%
!!! TAACATTTTTCAACCTTTTA+AGG - chr6_1:6758084-6758103 None:intergenic 20.0%
!!! GCACAAATTTATTTTATCAA+AGG + chr6_1:6758165-6758184 Msa0871710:intron 20.0%
!! TAGAAATATATCTAAGAACT+TGG + chr6_1:6758384-6758403 Msa0871710:intron 20.0%
!!! TAATAATGAGAAACGTTTTT+TGG + chr6_1:6758527-6758546 Msa0871710:intron 20.0%
!!! AAGGTTTTAAAGGTAAAAAA+AGG + chr6_1:6758637-6758656 Msa0871710:intron 20.0%
!! ATACAACTACAATAAAATCA+TGG + chr6_1:6758812-6758831 Msa0871710:intron 20.0%
!!! CTAAAGCTTATTGATTAATT+AGG - chr6_1:6759465-6759484 None:intergenic 20.0%
!!! ATTTAACATGTGATACATTT+TGG - chr6_1:6759694-6759713 None:intergenic 20.0%
! AGTGATAAGAGAGATATAAA+GGG - chr6_1:6756763-6756782 None:intergenic 25.0%
! AAGTGATAAGAGAGATATAA+AGG - chr6_1:6756764-6756783 None:intergenic 25.0%
! CATAATATATACCTAGATGT+TGG - chr6_1:6756993-6757012 None:intergenic 25.0%
! TATATATTATGTCTAGCAGA+AGG + chr6_1:6757002-6757021 Msa0871710:exon 25.0%
! AAATATTCATAGTGGTCTAA+GGG - chr6_1:6757223-6757242 None:intergenic 25.0%
! AAAATATTCATAGTGGTCTA+AGG - chr6_1:6757224-6757243 None:intergenic 25.0%
! AACCAAGTTTAAATTTGGAA+GGG + chr6_1:6757366-6757385 Msa0871710:intron 25.0%
! TATATTATGTAAGGACCTTA+CGG - chr6_1:6757869-6757888 None:intergenic 25.0%
!! AATAACTTTTGGATATGAAG+TGG - chr6_1:6757998-6758017 None:intergenic 25.0%
! GTTTCTTAAACAATGCTTTA+AGG + chr6_1:6758025-6758044 Msa0871710:intron 25.0%
!!! ATTCTTAACACGTGTTTTAA+GGG - chr6_1:6758114-6758133 None:intergenic 25.0%
!! AATTCTTAACACGTGTTTTA+AGG - chr6_1:6758115-6758134 None:intergenic 25.0%
! TCTCTTGGTCTAAAAAAAAA+TGG + chr6_1:6758317-6758336 Msa0871710:intron 25.0%
! CTATAATAATATAGGCTTGT+AGG - chr6_1:6758367-6758386 None:intergenic 25.0%
!! TGTACAAACACATCAATTTT+TGG + chr6_1:6758750-6758769 Msa0871710:intron 25.0%
! TTTAGGTCTCATATTATGTT+CGG + chr6_1:6758918-6758937 Msa0871710:intron 25.0%
! TAAAAAAATCAAAACTGGAC+TGG - chr6_1:6758949-6758968 None:intergenic 25.0%
!!! TTTTTTTATTTTGTGGTGTC+TGG + chr6_1:6758961-6758980 Msa0871710:intron 25.0%
!!! TTTTTTATTTTGTGGTGTCT+GGG + chr6_1:6758962-6758981 Msa0871710:intron 25.0%
!! CATAATATATCTAAGATTCG+AGG - chr6_1:6758995-6759014 None:intergenic 25.0%
! TGAAAGATTATCTCAGTTAT+TGG + chr6_1:6759396-6759415 Msa0871710:CDS 25.0%
!!! AGAGTGTACTTTATTTTAGA+TGG + chr6_1:6759539-6759558 Msa0871710:three_prime_UTR 25.0%
!!! GAGTGTACTTTATTTTAGAT+GGG + chr6_1:6759540-6759559 Msa0871710:three_prime_UTR 25.0%
! AATATGACACATGGATATAT+AGG - chr6_1:6759662-6759681 None:intergenic 25.0%
TAGGATGTTGCTAAGTAAAA+TGG - chr6_1:6756648-6756667 None:intergenic 30.0%
TTGAAGCAAACAATTGCATT+GGG - chr6_1:6756683-6756702 None:intergenic 30.0%
! TTTGAAGCAAACAATTGCAT+TGG - chr6_1:6756684-6756703 None:intergenic 30.0%
GAAGTAGAGTTAAAAGCTAT+AGG - chr6_1:6756806-6756825 None:intergenic 30.0%
ACAAAAGACAAGCTATATAG+TGG - chr6_1:6756855-6756874 None:intergenic 30.0%
AACCAAGAAGATACAAATGA+GGG - chr6_1:6756935-6756954 None:intergenic 30.0%
TAACCAAGAAGATACAAATG+AGG - chr6_1:6756936-6756955 None:intergenic 30.0%
AGAAAAATACACCAACATCT+AGG + chr6_1:6756979-6756998 Msa0871710:five_prime_UTR 30.0%
CATCGAACCAAGTTTAAATT+TGG + chr6_1:6757361-6757380 Msa0871710:intron 30.0%
GAACCAAGTTTAAATTTGGA+AGG + chr6_1:6757365-6757384 Msa0871710:intron 30.0%
ACCAAGTTTAAATTTGGAAG+GGG + chr6_1:6757367-6757386 Msa0871710:intron 30.0%
AATGCTCTTCAAATTTGAAG+AGG - chr6_1:6757607-6757626 None:intergenic 30.0%
CATAAAATTAGAGAGGAGTA+TGG - chr6_1:6757756-6757775 None:intergenic 30.0%
! CATACTCCTCTCTAATTTTA+TGG + chr6_1:6757754-6757773 Msa0871710:intron 30.0%
!! ATTTTAGTAGTCTTACCGTA+AGG + chr6_1:6757851-6757870 Msa0871710:intron 30.0%
GCATGCATCTATATTATGTA+AGG - chr6_1:6757878-6757897 None:intergenic 30.0%
AGTGAGGATAAAACTTTGTT+GGG - chr6_1:6758295-6758314 None:intergenic 30.0%
TAGTGAGGATAAAACTTTGT+TGG - chr6_1:6758296-6758315 None:intergenic 30.0%
! TTAAAACCTTTTCCCTTTCT+GGG - chr6_1:6758627-6758646 None:intergenic 30.0%
!! TTTAAAACCTTTTCCCTTTC+TGG - chr6_1:6758628-6758647 None:intergenic 30.0%
!! AGAAAGGGAAAAGGTTTTAA+AGG + chr6_1:6758627-6758646 Msa0871710:intron 30.0%
TGATAATCATATCTCGCTTT+AGG + chr6_1:6758901-6758920 Msa0871710:intron 30.0%
!!! TTTTTATTTTGTGGTGTCTG+GGG + chr6_1:6758963-6758982 Msa0871710:intron 30.0%
ACTGACTAATTATATTGTGC+AGG + chr6_1:6759300-6759319 Msa0871710:intron 30.0%
CCATCTATAAATATGACACA+TGG - chr6_1:6759671-6759690 None:intergenic 30.0%
CCATGTGTCATATTTATAGA+TGG + chr6_1:6759668-6759687 Msa0871710:three_prime_UTR 30.0%
GAGAGATGAGCCTAAAATAT+TGG - chr6_1:6756624-6756643 None:intergenic 35.0%
TTGTACCCTTCCTTCATTTA+TGG + chr6_1:6756726-6756745 Msa0871710:five_prime_UTR 35.0%
GAGATATAAAGGGAGAGAAA+GGG - chr6_1:6756753-6756772 None:intergenic 35.0%
AGAGATATAAAGGGAGAGAA+AGG - chr6_1:6756754-6756773 None:intergenic 35.0%
! TATATAGTGGAGAAAAGGAG+AGG - chr6_1:6756842-6756861 None:intergenic 35.0%
! CAAGCTATATAGTGGAGAAA+AGG - chr6_1:6756847-6756866 None:intergenic 35.0%
ACCCCTTCCAAATTTAAACT+TGG - chr6_1:6757371-6757390 None:intergenic 35.0%
TCTTGAAGCTCATGAAAATC+AGG + chr6_1:6757577-6757596 Msa0871710:intron 35.0%
TTAGCAATAGCAACATGTGT+AGG + chr6_1:6758251-6758270 Msa0871710:intron 35.0%
TAGCAATAGCAACATGTGTA+GGG + chr6_1:6758252-6758271 Msa0871710:intron 35.0%
! TTTTATCCTCACTACTCTCT+TGG + chr6_1:6758302-6758321 Msa0871710:intron 35.0%
! TAAAACCTTTTCCCTTTCTG+GGG - chr6_1:6758626-6758645 None:intergenic 35.0%
TAACAGTCATGAGGTAATTG+TGG + chr6_1:6758671-6758690 Msa0871710:intron 35.0%
TAACCTAAGCTCATGATGAT+CGG + chr6_1:6759031-6759050 Msa0871710:intron 35.0%
TATACTGTCCTTTGTCACAA+AGG - chr6_1:6759232-6759251 None:intergenic 35.0%
! CTTCTGATAATATTAGCCTC+TGG - chr6_1:6759442-6759461 None:intergenic 35.0%
!!! GTACTTTATTTTAGATGGGC+TGG + chr6_1:6759544-6759563 Msa0871710:three_prime_UTR 35.0%
! TGAGGTGTGCAATTTTCATA+TGG + chr6_1:6759580-6759599 Msa0871710:three_prime_UTR 35.0%
!!! ATATGGCGGGTATATTTTGA+AGG + chr6_1:6759597-6759616 Msa0871710:three_prime_UTR 35.0%
AGGGACCATAAATGAAGGAA+GGG - chr6_1:6756734-6756753 None:intergenic 40.0%
AAGGGACCATAAATGAAGGA+AGG - chr6_1:6756735-6756754 None:intergenic 40.0%
GAGAAAGGGACCATAAATGA+AGG - chr6_1:6756739-6756758 None:intergenic 40.0%
CTCCCTCATTTGTATCTTCT+TGG + chr6_1:6756930-6756949 Msa0871710:five_prime_UTR 40.0%
TTATGTCTAGCAGAAGGTCA+AGG + chr6_1:6757008-6757027 Msa0871710:exon 40.0%
! AGGAACAAGTTGACGTAACT+TGG - chr6_1:6757086-6757105 None:intergenic 40.0%
TTGTTCCTGAGATTCGTCAT+AGG + chr6_1:6757098-6757117 Msa0871710:CDS 40.0%
GGTCTAAGGGACATTATCAA+AGG - chr6_1:6757210-6757229 None:intergenic 40.0%
AAATTTGGAAGGGGTAGTCT+AGG + chr6_1:6757376-6757395 Msa0871710:intron 40.0%
TTTAGACCAAGAGAGTAGTG+AGG - chr6_1:6758311-6758330 None:intergenic 40.0%
TGTCATGGTCAATCTTACGA+AGG + chr6_1:6758419-6758438 Msa0871710:intron 40.0%
GTCATGGTCAATCTTACGAA+GGG + chr6_1:6758420-6758439 Msa0871710:intron 40.0%
! GTCAATCTTACGAAGGGTAT+AGG + chr6_1:6758426-6758445 Msa0871710:intron 40.0%
CACATGATACATGTACGAGT+CGG - chr6_1:6758478-6758497 None:intergenic 40.0%
! TGAGCTTAGGTTAGTTGGTA+GGG - chr6_1:6759024-6759043 None:intergenic 40.0%
! ATGAGCTTAGGTTAGTTGGT+AGG - chr6_1:6759025-6759044 None:intergenic 40.0%
CATCATGAGCTTAGGTTAGT+TGG - chr6_1:6759029-6759048 None:intergenic 40.0%
TGTAGTTGCAAGTCTCTTGT+AGG - chr6_1:6759342-6759361 None:intergenic 40.0%
AATTGATGCTGATAGTCCAG+AGG + chr6_1:6759423-6759442 Msa0871710:CDS 40.0%
! GGTGTGCAATTTTCATATGG+CGG + chr6_1:6759583-6759602 Msa0871710:three_prime_UTR 40.0%
! GTGTGCAATTTTCATATGGC+GGG + chr6_1:6759584-6759603 Msa0871710:three_prime_UTR 40.0%
CAATTGCATTGGGAAAGCAG+TGG - chr6_1:6756673-6756692 None:intergenic 45.0%
AAAAGGAGAGGAGGAATGGT+AGG - chr6_1:6756830-6756849 None:intergenic 45.0%
! ATAGTGGAGAAAAGGAGAGG+AGG - chr6_1:6756839-6756858 None:intergenic 45.0%
TCGTCATAGGCGTTCAGATA+AGG + chr6_1:6757111-6757130 Msa0871710:CDS 45.0%
TGGTCAAGCAGACAATGTCA+TGG + chr6_1:6758404-6758423 Msa0871710:intron 45.0%
TGAATGGTGTGGGAACAGTT+TGG - chr6_1:6758453-6758472 None:intergenic 45.0%
TATAACGCAGAACCCCAGAA+AGG + chr6_1:6758611-6758630 Msa0871710:intron 45.0%
ATAACGCAGAACCCCAGAAA+GGG + chr6_1:6758612-6758631 Msa0871710:intron 45.0%
ACTGCACTGTAACAGTCATG+AGG + chr6_1:6758662-6758681 Msa0871710:intron 45.0%
CCTTTGTCACAAAGGACTAG+TGG - chr6_1:6759224-6759243 None:intergenic 45.0%
CCACTAGTCCTTTGTGACAA+AGG + chr6_1:6759221-6759240 Msa0871710:intron 45.0%
TGTGCAGGTATCAGCATCTA+AGG + chr6_1:6759315-6759334 Msa0871710:intron 45.0%
!!! TATTTTTCTATTTATATATA+TGG - chr6_1:6756968-6756987 None:intergenic 5.0%
!!! CAATAAATATTTTTTATTAA+TGG + chr6_1:6758206-6758225 Msa0871710:intron 5.0%
!!! ATATATTTCTATAATAATAT+AGG - chr6_1:6758375-6758394 None:intergenic 5.0%
GGAGAAAAGGAGAGGAGGAA+TGG - chr6_1:6756834-6756853 None:intergenic 50.0%
GAACGCCTATGACGAATCTC+AGG - chr6_1:6757106-6757125 None:intergenic 50.0%
!! TCATACGGCAGAGCTTTGAG+TGG + chr6_1:6757518-6757537 Msa0871710:intron 50.0%
CATGTACGAGTCGGTGTGAA+TGG - chr6_1:6758469-6758488 None:intergenic 50.0%
CAGAACCCCAGAAAGGGAAA+AGG + chr6_1:6758618-6758637 Msa0871710:intron 50.0%
GGACCGATCATCATGAGCTT+AGG - chr6_1:6759037-6759056 None:intergenic 50.0%
GCTGGCTAGAGTGTAGTTTG+AGG + chr6_1:6759562-6759581 Msa0871710:three_prime_UTR 50.0%
CATTGGGAAAGCAGTGGCGT+AGG - chr6_1:6756667-6756686 None:intergenic 55.0%
CGAGTCGGTGTGAATGGTGT+GGG - chr6_1:6758463-6758482 None:intergenic 55.0%
ACGAGTCGGTGTGAATGGTG+TGG - chr6_1:6758464-6758483 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 6756619 6759780 6756619 ID=Msa0871710;Name=Msa0871710
chr6_1 mRNA 6756619 6759780 6756619 ID=Msa0871710-mRNA-1;Parent=Msa0871710;Name=Msa0871710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=391|1|1|1|1|1|2|303|92
chr6_1 exon 6756619 6757132 6756619 ID=Msa0871710-mRNA-1:exon:2102;Parent=Msa0871710-mRNA-1
chr6_1 exon 6759322 6759780 6759322 ID=Msa0871710-mRNA-1:exon:2103;Parent=Msa0871710-mRNA-1
chr6_1 five_prime_UTR 6756619 6757009 6756619 ID=Msa0871710-mRNA-1:five_prime_utr;Parent=Msa0871710-mRNA-1
chr6_1 CDS 6757010 6757132 6757010 ID=Msa0871710-mRNA-1:cds;Parent=Msa0871710-mRNA-1
chr6_1 CDS 6759322 6759477 6759322 ID=Msa0871710-mRNA-1:cds;Parent=Msa0871710-mRNA-1
chr6_1 three_prime_UTR 6759478 6759780 6759478 ID=Msa0871710-mRNA-1:three_prime_utr;Parent=Msa0871710-mRNA-1
Gene Sequence

>Msa0871710

ATGTCTAGCAGAAGGTCAAGGCAACAATCTTCTTCTTCAAGAATTTCTGATGATCAAATCATTGAACTTGTTTCCAAGTTACGTCAACTTGTTCCTGAGATTCGTCATAGGCGTTCAGATAAGGTATCAGCATCTAAGGTCCTACAAGAGACTTGCAACTACATAAGAAACTTACATAGAGAAGTTGATGATTTAAGTGAAAGATTATCTCAGTTATTGGTCACAATTGATGCTGATAGTCCAGAGGCTAATATTATCAGAAGCCTAATTAATCAATAA
Protein sequence

>Msa0871710

MSSRRSRQQSSSSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLVTIDADSPEANIIRSLINQ*