AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0977350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0977350 MtrunA17_Chr6g0456691 99.408 169 1 0 1 169 1 169 1.87e-122 352
Msa0977350 MtrunA17_Chr7g0221271 72.515 171 46 1 1 170 1 171 2.53e-91 265
Msa0977350 MtrunA17_Chr7g0221291 69.006 171 52 1 1 170 1 171 3.19e-87 253
Msa0977350 MtrunA17_Chr6g0456681 50.633 158 62 6 1 157 1 143 2.98e-45 154
Msa0977350 MtrunA17_Chr8g0387921 58.252 103 43 0 73 175 69 171 3.24e-41 143
Msa0977350 MtrunA17_Chr8g0347321 45.390 141 62 3 63 189 77 216 2.43e-37 134
Msa0977350 MtrunA17_Chr2g0283851 63.441 93 33 1 79 171 56 147 9.29e-37 131
Msa0977350 MtrunA17_Chr6g0451321 55.556 99 43 1 71 168 109 207 8.85e-35 127
Msa0977350 MtrunA17_Chr6g0476041 41.007 139 70 2 63 189 147 285 3.19e-34 126
Msa0977350 MtrunA17_Chr1g0188191 45.690 116 54 1 55 170 220 326 1.15e-33 125
Msa0977350 MtrunA17_Chr7g0226991 52.083 96 46 0 76 171 55 150 7.44e-32 118
Msa0977350 MtrunA17_Chr8g0391481 47.222 108 57 0 62 169 11 118 2.45e-31 117
Msa0977350 MtrunA17_Chr5g0414061 51.111 90 44 0 78 167 94 183 3.69e-31 117
Msa0977350 MtrunA17_Chr5g0414051 48.936 94 48 0 78 171 75 168 4.96e-30 114
Msa0977350 MtrunA17_Chr5g0414041 52.128 94 43 1 65 158 76 167 8.76e-29 110
Msa0977350 MtrunA17_Chr5g0414091 39.333 150 90 1 18 167 26 174 9.84e-29 110
Msa0977350 MtrunA17_Chr3g0105301 47.778 90 47 0 77 166 42 131 8.62e-27 104
Msa0977350 MtrunA17_Chr5g0430371 45.455 110 51 1 77 177 57 166 3.96e-26 103
Msa0977350 MtrunA17_Chr3g0085081 42.857 98 56 0 69 166 22 119 5.93e-26 102
Msa0977350 MtrunA17_Chr3g0091031 42.857 98 56 0 69 166 22 119 1.27e-25 100
Msa0977350 MtrunA17_Chr5g0413271 42.718 103 58 1 67 168 133 235 2.25e-25 101
Msa0977350 MtrunA17_Chr7g0258851 45.161 93 51 0 74 166 244 336 4.37e-25 101
Msa0977350 MtrunA17_Chr8g0368461 42.017 119 68 1 63 181 164 281 4.92e-25 101
Msa0977350 MtrunA17_Chr7g0259711 33.333 150 98 1 20 167 31 180 6.21e-25 100
Msa0977350 MtrunA17_Chr3g0140371 47.872 94 48 1 78 171 18 110 6.55e-25 99.4
Msa0977350 MtrunA17_Chr3g0085071 44.898 98 54 0 69 166 37 134 1.19e-24 98.6
Msa0977350 MtrunA17_Chr3g0113671 42.342 111 63 1 76 185 104 214 2.72e-24 98.6
Msa0977350 MtrunA17_Chr8g0360521 44.211 95 52 1 76 169 69 163 5.03e-24 97.4
Msa0977350 MtrunA17_Chr2g0287901 41.228 114 61 1 54 167 79 186 5.97e-24 97.8
Msa0977350 MtrunA17_Chr7g0269991 40.566 106 63 0 78 183 137 242 1.09e-23 97.1
Msa0977350 MtrunA17_Chr5g0437601 32.738 168 93 6 14 169 16 175 1.50e-23 96.3
Msa0977350 MtrunA17_Chr7g0243301 37.500 120 74 1 69 187 55 174 2.27e-23 95.9
Msa0977350 MtrunA17_Chr1g0209921 47.312 93 47 2 76 166 42 134 4.00e-23 92.8
Msa0977350 MtrunA17_Chr1g0175671 43.011 93 53 0 74 166 166 258 5.93e-23 95.1
Msa0977350 MtrunA17_Chr4g0041011 37.821 156 84 4 30 183 1 145 8.10e-23 93.6
Msa0977350 MtrunA17_Chr4g0068111 43.750 96 53 1 72 166 108 203 1.15e-22 94.0
Msa0977350 MtrunA17_Chr4g0005491 34.266 143 76 3 25 166 26 151 1.64e-22 93.2
Msa0977350 MtrunA17_Chr8g0384151 39.604 101 61 0 66 166 78 178 1.88e-22 93.2
Msa0977350 MtrunA17_Chr3g0097891 45.556 90 49 0 77 166 30 119 2.44e-22 92.0
Msa0977350 MtrunA17_Chr3g0114101 46.237 93 49 1 78 169 89 181 2.54e-22 92.8
Msa0977350 MtrunA17_Chr2g0325481 44.944 89 49 0 78 166 50 138 3.45e-22 92.0
Msa0977350 MtrunA17_Chr4g0071391 40.860 93 55 0 74 166 105 197 5.34e-22 92.0
Msa0977350 MtrunA17_Chr5g0437291 36.697 109 61 2 76 183 163 264 2.24e-21 90.5
Msa0977350 MtrunA17_Chr1g0213281 35.878 131 81 1 40 167 134 264 5.87e-21 89.4
Msa0977350 MtrunA17_Chr7g0242701 42.105 95 54 1 76 169 84 178 1.08e-20 88.2
Msa0977350 MtrunA17_Chr2g0283581 44.444 90 49 1 77 166 41 129 1.10e-20 87.8
Msa0977350 MtrunA17_Chr5g0413851 36.154 130 73 2 39 168 11 130 1.49e-20 87.4
Msa0977350 MtrunA17_Chr4g0045941 38.776 98 58 1 71 166 24 121 3.16e-20 86.3
Msa0977350 MtrunA17_Chr4g0006991 39.785 93 55 1 78 169 86 178 3.20e-20 87.0
Msa0977350 MtrunA17_Chr1g0171171 31.694 183 99 6 17 189 7 173 4.05e-20 86.3
Msa0977350 MtrunA17_Chr1g0210771 38.739 111 64 2 62 169 40 149 4.48e-20 86.3
Msa0977350 MtrunA17_Chr2g0314801 41.739 115 59 2 74 187 29 136 8.29e-20 85.5
Msa0977350 MtrunA17_Chr4g0045951 40.217 92 55 0 75 166 42 133 3.02e-19 84.0
Msa0977350 MtrunA17_Chr4g0005481 40.426 94 55 1 74 166 104 197 5.66e-19 83.6
Msa0977350 MtrunA17_Chr3g0126021 39.175 97 55 1 74 166 125 221 1.20e-18 82.8
Msa0977350 MtrunA17_Chr1g0178081 39.604 101 55 2 72 168 49 147 6.86e-18 80.1
Msa0977350 MtrunA17_Chr2g0314791 41.053 95 50 1 78 166 29 123 7.01e-18 80.1
Msa0977350 MtrunA17_Chr4g0070341 33.981 103 55 2 72 167 126 222 2.51e-15 73.2
Msa0977350 MtrunA17_Chr8g0384421 33.673 98 62 2 78 173 133 229 3.72e-15 72.8
Msa0977350 MtrunA17_Chr4g0049421 32.222 90 60 1 78 166 48 137 7.84e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0977350 AT5G15900.1 58.553 152 57 3 21 170 14 161 2.36e-58 189
Msa0977350 AT5G15900.2 58.553 152 57 3 21 170 33 180 3.16e-58 189
Msa0977350 AT3G02440.1 81.522 92 17 0 78 169 127 218 6.82e-53 176
Msa0977350 AT3G02440.2 81.522 92 17 0 78 169 135 226 7.00e-53 176
Msa0977350 AT5G15890.1 58.647 133 54 1 37 169 147 278 1.39e-51 173
Msa0977350 AT1G01430.1 46.377 138 69 2 33 169 57 190 5.01e-39 139
Msa0977350 AT3G28150.1 46.269 134 67 1 34 167 31 159 4.64e-37 133
Msa0977350 AT4G01080.1 53.271 107 45 1 70 171 78 184 1.09e-35 129
Msa0977350 AT4G11090.1 38.462 156 85 3 27 171 18 173 8.69e-35 127
Msa0977350 AT4G23790.1 37.736 159 83 3 29 171 15 173 1.39e-34 126
Msa0977350 AT5G51640.1 44.000 125 69 1 45 169 106 229 1.78e-32 122
Msa0977350 AT1G70230.1 34.483 174 89 2 14 169 4 170 3.04e-32 120
Msa0977350 AT4G25360.1 40.625 128 69 1 50 170 140 267 9.45e-32 120
Msa0977350 AT4G25360.2 40.625 128 69 1 50 170 140 267 9.45e-32 120
Msa0977350 AT5G19160.2 34.568 162 87 3 20 167 32 188 4.35e-27 105
Msa0977350 AT5G19160.1 34.568 162 87 3 20 167 32 188 2.29e-26 104
Msa0977350 AT1G60790.1 41.270 126 66 2 43 166 161 280 2.52e-26 105
Msa0977350 AT3G62390.2 37.984 129 71 1 60 179 111 239 7.97e-26 102
Msa0977350 AT5G06700.1 47.368 95 50 0 72 166 249 343 1.22e-25 103
Msa0977350 AT2G30010.1 48.387 93 46 1 77 167 55 147 1.91e-25 101
Msa0977350 AT2G30010.2 48.387 93 46 1 77 167 98 190 1.93e-25 102
Msa0977350 AT3G62390.1 38.889 126 68 1 60 176 111 236 2.29e-25 102
Msa0977350 AT3G12060.1 46.237 93 50 0 74 166 192 284 3.77e-25 102
Msa0977350 AT2G30900.2 44.167 120 61 3 48 166 18 132 1.29e-24 97.4
Msa0977350 AT2G40320.1 37.748 151 85 4 24 169 27 173 2.17e-24 99.0
Msa0977350 AT5G58600.2 36.242 149 89 3 24 166 7 155 5.79e-24 95.9
Msa0977350 AT2G30900.1 43.802 121 62 3 47 166 17 132 7.25e-24 97.1
Msa0977350 AT2G40160.3 35.294 136 79 2 51 185 58 185 8.74e-24 95.9
Msa0977350 AT3G06080.1 44.681 94 52 0 74 167 99 192 1.29e-23 95.9
Msa0977350 AT1G73140.1 41.053 95 55 1 76 169 65 159 1.56e-23 96.7
Msa0977350 AT5G58600.1 36.242 149 89 3 24 166 7 155 2.44e-23 95.9
Msa0977350 AT2G42570.1 40.625 128 63 2 59 177 32 155 3.27e-23 95.1
Msa0977350 AT2G40160.1 35.294 136 79 2 51 185 58 185 3.56e-23 95.5
Msa0977350 AT3G06080.2 44.681 94 52 0 74 167 99 192 4.19e-23 95.9
Msa0977350 AT2G40160.2 35.294 136 79 2 51 185 58 185 4.25e-23 95.5
Msa0977350 AT2G38320.1 33.526 173 105 4 15 185 3 167 4.75e-23 95.1
Msa0977350 AT5G49340.1 42.202 109 57 1 58 166 86 188 1.48e-22 94.4
Msa0977350 AT5G20590.2 38.318 107 63 2 61 166 126 230 1.50e-22 93.6
Msa0977350 AT2G40150.1 44.086 93 51 1 78 169 71 163 1.54e-22 94.0
Msa0977350 AT3G11030.1 46.739 92 48 1 76 166 104 195 1.71e-22 94.0
Msa0977350 AT1G48880.1 34.211 152 84 3 19 166 64 203 2.30e-22 93.6
Msa0977350 AT5G20590.1 38.318 107 63 2 61 166 126 230 3.25e-22 93.2
Msa0977350 AT3G55990.1 43.158 95 53 1 76 169 138 232 9.61e-22 92.0
Msa0977350 AT2G34070.1 37.273 110 60 1 77 177 64 173 3.96e-21 89.7
Msa0977350 AT3G14850.2 41.935 93 54 0 74 166 30 122 7.28e-21 88.6
Msa0977350 AT1G29050.1 36.364 110 61 1 77 177 60 169 9.30e-21 88.6
Msa0977350 AT5G01360.2 35.789 95 60 1 76 169 34 128 2.73e-20 87.4
Msa0977350 AT5G01360.1 35.789 95 60 1 76 169 90 184 3.42e-20 87.4
Msa0977350 AT5G06230.3 39.423 104 55 2 73 169 57 159 2.92e-19 83.6
Msa0977350 AT2G37720.1 38.739 111 62 3 68 173 130 239 4.16e-19 84.3
Msa0977350 AT5G06230.2 39.423 104 55 2 73 169 16 118 6.00e-19 83.6
Msa0977350 AT5G06230.1 39.423 104 55 2 73 169 57 159 6.71e-19 83.6
Msa0977350 AT3G54260.1 41.304 92 53 1 78 169 51 141 1.21e-18 82.8
Msa0977350 AT2G31110.3 34.848 132 79 2 35 166 9 133 1.37e-18 81.3
Msa0977350 AT5G01620.2 38.542 96 57 1 76 169 108 203 2.11e-18 82.4
Msa0977350 AT5G01620.1 38.542 96 57 1 76 169 108 203 2.11e-18 82.4
Msa0977350 AT5G01620.3 38.542 96 57 1 76 169 116 211 2.26e-18 82.4
Msa0977350 AT2G31110.2 34.848 132 79 2 35 166 9 133 5.39e-18 80.9
Msa0977350 AT1G78710.2 38.235 102 60 2 66 166 19 118 7.11e-18 79.7
Msa0977350 AT2G14530.1 35.556 135 75 5 46 169 22 155 1.00e-17 80.5
Msa0977350 AT1G78710.1 38.235 102 60 2 66 166 26 125 1.12e-17 79.7
Msa0977350 AT3G11570.1 34.783 161 84 4 15 169 28 173 1.19e-17 80.1
Msa0977350 AT5G64020.1 38.776 98 57 2 78 173 57 153 1.42e-17 79.7
Msa0977350 AT5G64470.4 39.560 91 53 2 78 166 55 145 1.11e-15 73.9
Msa0977350 AT5G64470.2 39.560 91 53 2 78 166 55 145 1.17e-15 74.3
Msa0977350 AT5G64470.1 39.560 91 53 2 78 166 55 145 1.19e-15 73.9
Msa0977350 AT5G64470.3 39.560 91 53 2 78 166 55 145 1.21e-15 74.3
Msa0977350 AT5G20680.6 32.331 133 69 4 55 172 87 213 3.68e-15 73.2
Msa0977350 AT5G20680.4 32.331 133 69 4 55 172 181 307 3.86e-15 73.2
Msa0977350 AT5G20680.1 32.331 133 69 4 55 172 181 307 3.86e-15 73.2
Msa0977350 AT5G20680.3 32.331 133 69 4 55 172 181 307 3.86e-15 73.2
Msa0977350 AT5G20680.5 32.331 133 69 4 55 172 181 307 3.86e-15 73.2
Msa0977350 AT5G20680.2 32.331 133 69 4 55 172 163 289 4.16e-15 73.2
Msa0977350 AT2G38320.2 38.462 78 48 0 108 185 7 84 9.56e-15 71.2

Find 47 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATATTTAAGTCTATTAA+TGG 0.170157 6_4:+12063722 Msa0977350:five_prime_UTR
CCATTAATAGACTTAAATAT+TGG 0.193373 6_4:-12063722 None:intergenic
AAGGGAAATGAAAGAAGTTT+TGG 0.266458 6_4:-12063852 None:intergenic
AGAGAAAGGTGTAGGGAAAT+AGG 0.277763 6_4:-12063880 None:intergenic
AATTGAAAAGGATTGAAAAT+TGG 0.281299 6_4:-12064326 None:intergenic
CCTTTGTCTTATCCTTTGTT+TGG 0.310847 6_4:+12064044 Msa0977350:CDS
CAATTTCTTGAAATTGTTAG+AGG 0.323954 6_4:+12064344 Msa0977350:CDS
GAATCAACATTTGAAGAGTT+TGG 0.328520 6_4:-12064104 None:intergenic
CATTAATAGACTTAAATATT+GGG 0.336747 6_4:-12063721 None:intergenic
TTTGTGTAATATGGTCCTTT+TGG 0.342622 6_4:-12064200 None:intergenic
ATTGGTAATTCACACTCATT+TGG 0.354395 6_4:-12064308 None:intergenic
ACAACTTGAAGCATTGCTAA+TGG 0.368679 6_4:+12063753 Msa0977350:five_prime_UTR
CATTGATTTGTCTTCTATCA+AGG 0.377308 6_4:+12064417 Msa0977350:CDS
AATTGTTAGAGGAAAATCTA+TGG 0.387764 6_4:+12064355 Msa0977350:CDS
CAACCTCCATCACCGTTGTT+TGG 0.388816 6_4:+12067946 Msa0977350:CDS
CATCAAAATTGCATGAAGTA+TGG 0.396655 6_4:+12064248 Msa0977350:CDS
CACTTCATGAACTCAGAATC+TGG 0.401439 6_4:-12064275 None:intergenic
TGTAGGGAAATAGGAGGATA+AGG 0.407354 6_4:-12063871 None:intergenic
ACAATTTCAAGAAATTGAAA+AGG 0.480067 6_4:-12064338 None:intergenic
AGAAAACAAGAGAAAGGTGT+AGG 0.480466 6_4:-12063888 None:intergenic
AAAGAGAGAAAACAAGAGAA+AGG 0.484374 6_4:-12063894 None:intergenic
TTACACAAACAAAACATGTT+GGG 0.484375 6_4:+12064214 Msa0977350:CDS
GGTTCGCCGCCGTCCTTTGG+CGG 0.495153 6_4:+12067905 Msa0977350:intron
CAAACAAAGGATAAGACAAA+GGG 0.511568 6_4:-12064043 None:intergenic
TGCTTTGAATTCTAATTGAG+TGG 0.513034 6_4:-12063799 None:intergenic
ATTACACAAACAAAACATGT+TGG 0.513699 6_4:+12064213 Msa0977350:CDS
ATTGATTTGTCTTCTATCAA+GGG 0.514925 6_4:+12064418 Msa0977350:CDS
GAAAACAAGAGAAAGGTGTA+GGG 0.519811 6_4:-12063887 None:intergenic
CTGAGTTCATGAAGTGGAGA+TGG 0.523549 6_4:+12064282 Msa0977350:CDS
ATGGAGGTTGAGGAAGATGA+AGG 0.524327 6_4:-12067933 None:intergenic
GTAGGGAAATAGGAGGATAA+GGG 0.525313 6_4:-12063870 None:intergenic
GAATGGGTGCCAAATCCAAA+AGG 0.542062 6_4:+12064185 Msa0977350:CDS
AACAACGGTGATGGAGGTTG+AGG 0.546049 6_4:-12067943 None:intergenic
AAAATTGCATGAAGTATGGT+AGG 0.554471 6_4:+12064252 Msa0977350:CDS
AAAACTGAGAACATCGCAAA+GGG 0.566726 6_4:+12063676 None:intergenic
CAGTCACCAAACAACGGTGA+TGG 0.568982 6_4:-12067952 None:intergenic
AAATGTTGATTCAATCGAGA+AGG 0.571010 6_4:+12064115 Msa0977350:CDS
GAAAGGTGTAGGGAAATAGG+AGG 0.584068 6_4:-12063877 None:intergenic
AAGGTAGCACCGCCAAAGGA+CGG 0.587536 6_4:-12067914 None:intergenic
GATGAAGGTAGCACCGCCAA+AGG 0.611256 6_4:-12067918 None:intergenic
CCAAACAAAGGATAAGACAA+AGG 0.615001 6_4:-12064044 None:intergenic
TCACCAAACAACGGTGATGG+AGG 0.628704 6_4:-12067949 None:intergenic
AGAAATGATGAACCAAACAA+AGG 0.648407 6_4:-12064056 None:intergenic
CAGATTCTGAGTTCATGAAG+TGG 0.668427 6_4:+12064276 Msa0977350:CDS
AACCAGCAGTCACCAAACAA+CGG 0.676846 6_4:-12067958 None:intergenic
GTAGCACCGCCAAAGGACGG+CGG 0.677906 6_4:-12067911 None:intergenic
AAACAAAGGATAAGACAAAG+GGG 0.730288 6_4:-12064042 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGCTAATAAAATTATTTT+TGG - chr6_4:12063996-12064015 None:intergenic 10.0%
!! TAAAATAATAAGGTTTAAAT+GGG - chr6_4:12066709-12066728 None:intergenic 10.0%
!! TTAAAATAATAAGGTTTAAA+TGG - chr6_4:12066710-12066729 None:intergenic 10.0%
!! CATTAATAGACTTAAATATT+GGG - chr6_4:12063724-12063743 None:intergenic 15.0%
!!! AAAATACTTTTAATAGGTTT+TGG + chr6_4:12064979-12064998 Msa0977350:intron 15.0%
!! TAATTAAAGTAGAGTTATTT+GGG - chr6_4:12065440-12065459 None:intergenic 15.0%
!!! TATTTAACGAACTTAATTTT+CGG - chr6_4:12065737-12065756 None:intergenic 15.0%
!! GTAGTTCAATTATTATTATT+TGG + chr6_4:12066269-12066288 Msa0977350:intron 15.0%
!! ACAAAAAAAAAAAAAAGACA+CGG - chr6_4:12067040-12067059 None:intergenic 15.0%
!! AATAATGTATAATACATGTA+GGG - chr6_4:12067133-12067152 None:intergenic 15.0%
!! TCACTTTATTAATAATCATT+GGG - chr6_4:12067418-12067437 None:intergenic 15.0%
!! CCATTAATAGACTTAAATAT+TGG - chr6_4:12063725-12063744 None:intergenic 20.0%
!! CCAATATTTAAGTCTATTAA+TGG + chr6_4:12063722-12063741 Msa0977350:five_prime_UTR 20.0%
!!! AAAAATTGTGACATTTTTAG+TGG + chr6_4:12064161-12064180 Msa0977350:CDS 20.0%
!! AATTGAAAAGGATTGAAAAT+TGG - chr6_4:12064329-12064348 None:intergenic 20.0%
!! ACAATTTCAAGAAATTGAAA+AGG - chr6_4:12064341-12064360 None:intergenic 20.0%
!! TTAACATAGACATCAAAAAA+GGG - chr6_4:12064629-12064648 None:intergenic 20.0%
!! ATTAACATAGACATCAAAAA+AGG - chr6_4:12064630-12064649 None:intergenic 20.0%
!! TATGTTAATTATAGTTGCTT+TGG + chr6_4:12064641-12064660 Msa0977350:intron 20.0%
!! GTAATTAAAGTAGAGTTATT+TGG - chr6_4:12065441-12065460 None:intergenic 20.0%
!! AAGAAAAAAAACTAAGAGAT+TGG + chr6_4:12065486-12065505 Msa0977350:intron 20.0%
!! CTTTGTAAAAATATTGTCAT+TGG + chr6_4:12066377-12066396 Msa0977350:intron 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG + chr6_4:12066437-12066456 Msa0977350:intron 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG - chr6_4:12066437-12066456 None:intergenic 20.0%
!! CTTATAATGTATTACCATTA+GGG - chr6_4:12066970-12066989 None:intergenic 20.0%
!! TCTTATAATGTATTACCATT+AGG - chr6_4:12066971-12066990 None:intergenic 20.0%
!! ATAATGTATAATACATGTAG+GGG - chr6_4:12067132-12067151 None:intergenic 20.0%
!! GAATAATGTATAATACATGT+AGG - chr6_4:12067134-12067153 None:intergenic 20.0%
!!! GTCACTTTATTAATAATCAT+TGG - chr6_4:12067419-12067438 None:intergenic 20.0%
!!! ATAAGTTGAAAAATTTCCAA+AGG + chr6_4:12067663-12067682 Msa0977350:intron 20.0%
!!! TAAGTTGAAAAATTTCCAAA+GGG + chr6_4:12067664-12067683 Msa0977350:intron 20.0%
!! TTTTCTTGGAACTTCATTTT+TGG - chr6_4:12063933-12063952 None:intergenic 25.0%
!!! CAATTTTTCAAAGATGTTGA+AGG - chr6_4:12064149-12064168 None:intergenic 25.0%
!!! CATGTTTTGTTTGTGTAATA+TGG - chr6_4:12064212-12064231 None:intergenic 25.0%
! ATTACACAAACAAAACATGT+TGG + chr6_4:12064213-12064232 Msa0977350:CDS 25.0%
! TTACACAAACAAAACATGTT+GGG + chr6_4:12064214-12064233 Msa0977350:CDS 25.0%
! CAATTTCTTGAAATTGTTAG+AGG + chr6_4:12064344-12064363 Msa0977350:CDS 25.0%
! AATTGTTAGAGGAAAATCTA+TGG + chr6_4:12064355-12064374 Msa0977350:CDS 25.0%
!!! ATTGATTTGTCTTCTATCAA+GGG + chr6_4:12064418-12064437 Msa0977350:CDS 25.0%
!! NNNNNNNAGAAGTGTAGAAG+TGG - chr6_4:12064450-12064469 None:intergenic 25.0%
!!! TCATTGATTGATGGTATTTT+CGG - chr6_4:12064731-12064750 None:intergenic 25.0%
!! AATAGTGTATCATTGATTGA+TGG - chr6_4:12064740-12064759 None:intergenic 25.0%
! TAGTCATTTGTCAAAAGAAA+TGG + chr6_4:12064899-12064918 Msa0977350:intron 25.0%
!! TGTCATCTCTATTTCTTAAA+AGG - chr6_4:12065413-12065432 None:intergenic 25.0%
!!! AACAAGTACAAATGTTTTAG+AGG - chr6_4:12065928-12065947 None:intergenic 25.0%
! AGAAAAAAAAGAAGCAAATG+AGG + chr6_4:12066040-12066059 Msa0977350:intron 25.0%
!! ATTTGGTTTAAATGTGCAAT+TGG + chr6_4:12066286-12066305 Msa0977350:intron 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG - chr6_4:12066555-12066574 None:intergenic 25.0%
!!! ACAATATTTTTACAAAGTGC+AGG - chr6_4:12066374-12066393 None:intergenic 25.0%
!!! CACTTTTTTTTGTTTGACAT+TGG + chr6_4:12066406-12066425 Msa0977350:intron 25.0%
!!! CAATATTTTTACAAAGTGCA+AGG - chr6_4:12066555-12066574 None:intergenic 25.0%
! CTTGCACTTTGTAAAAATAT+TGG + chr6_4:12066431-12066450 Msa0977350:intron 25.0%
!! CAAAATTTTTACAAAGTGCA+GGG - chr6_4:12066464-12066483 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG + chr6_4:12066555-12066574 Msa0977350:intron 25.0%
! CTTTGTAAAAATATTGGCAT+TGG - chr6_4:12066611-12066630 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG + chr6_4:12066555-12066574 Msa0977350:intron 25.0%
! ATAAGGTTTAAATGGGTAAT+TGG - chr6_4:12066702-12066721 None:intergenic 25.0%
! ATAAAGTAAAGGTCAAGATA+TGG + chr6_4:12066730-12066749 Msa0977350:intron 25.0%
! ATTATAAGAACTCCAATAGA+TGG + chr6_4:12066982-12067001 Msa0977350:intron 25.0%
!!! ATTTTGTTAAGTGATGATGT+GGG - chr6_4:12067503-12067522 None:intergenic 25.0%
!!! TATTTTGTTAAGTGATGATG+TGG - chr6_4:12067504-12067523 None:intergenic 25.0%
!! TTTTTGATGAAAAAGAAGGT+CGG - chr6_4:12067693-12067712 None:intergenic 25.0%
! TGCTTTGAATTCTAATTGAG+TGG - chr6_4:12063802-12063821 None:intergenic 30.0%
! AAGGGAAATGAAAGAAGTTT+TGG - chr6_4:12063855-12063874 None:intergenic 30.0%
AAAGAGAGAAAACAAGAGAA+AGG - chr6_4:12063897-12063916 None:intergenic 30.0%
!! TTGGAACTTCATTTTTGGAA+GGG - chr6_4:12063928-12063947 None:intergenic 30.0%
AAACAAAGGATAAGACAAAG+GGG - chr6_4:12064045-12064064 None:intergenic 30.0%
CAAACAAAGGATAAGACAAA+GGG - chr6_4:12064046-12064065 None:intergenic 30.0%
AGAAATGATGAACCAAACAA+AGG - chr6_4:12064059-12064078 None:intergenic 30.0%
GAATCAACATTTGAAGAGTT+TGG - chr6_4:12064107-12064126 None:intergenic 30.0%
!! AAATGTTGATTCAATCGAGA+AGG + chr6_4:12064115-12064134 Msa0977350:CDS 30.0%
!!! TGACATTTTTAGTGGTGAAT+GGG + chr6_4:12064169-12064188 Msa0977350:CDS 30.0%
! TAATATGGTCCTTTTGGATT+TGG - chr6_4:12064197-12064216 None:intergenic 30.0%
! TTTGTGTAATATGGTCCTTT+TGG - chr6_4:12064203-12064222 None:intergenic 30.0%
CATCAAAATTGCATGAAGTA+TGG + chr6_4:12064248-12064267 Msa0977350:CDS 30.0%
AAAATTGCATGAAGTATGGT+AGG + chr6_4:12064252-12064271 Msa0977350:CDS 30.0%
! ATTGGTAATTCACACTCATT+TGG - chr6_4:12064311-12064330 None:intergenic 30.0%
!! CATTGATTTGTCTTCTATCA+AGG + chr6_4:12064417-12064436 Msa0977350:CDS 30.0%
TCAATCTATAAGCTTGATCA+AGG - chr6_4:12064826-12064845 None:intergenic 30.0%
! AGTCTCAACTCATTTGAAAT+AGG - chr6_4:12064878-12064897 None:intergenic 30.0%
CATTTGTCAAAAGAAATGGA+AGG + chr6_4:12064903-12064922 Msa0977350:intron 30.0%
AGAAATGGAAGGTTTCATTT+AGG + chr6_4:12064914-12064933 Msa0977350:intron 30.0%
!! TTTAATAGGTTTTGGTCTAG+TGG + chr6_4:12064987-12065006 Msa0977350:intron 30.0%
!!! CACTTTTTTTTGTTTGGCAT+TGG + chr6_4:12066346-12066365 Msa0977350:intron 30.0%
! GTCAAACAAAAAAAAGTGCA+GGG - chr6_4:12066404-12066423 None:intergenic 30.0%
! TGTCAAACAAAAAAAAGTGC+AGG - chr6_4:12066405-12066424 None:intergenic 30.0%
! CCAAAATTTTTACAAAGTGC+AGG - chr6_4:12066465-12066484 None:intergenic 30.0%
! CCTGCACTTTGTAAAAATTT+TGG + chr6_4:12066462-12066481 Msa0977350:intron 30.0%
CTTTGGACAAATAATGGTAT+TGG - chr6_4:12066520-12066539 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG - chr6_4:12066371-12066390 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG + chr6_4:12066554-12066573 Msa0977350:intron 30.0%
!!! CACTTTTTTTTGTTTGGCAT+TGG - chr6_4:12066346-12066365 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG - chr6_4:12066371-12066390 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG + chr6_4:12066554-12066573 Msa0977350:intron 30.0%
!!! CACTTTTTTTTGTTTGGCAT+TGG - chr6_4:12066346-12066365 None:intergenic 30.0%
! TTTAAAGTTCACGAACAACT+CGG - chr6_4:12066826-12066845 None:intergenic 30.0%
!!! CCTTTTTTTTAACTCGAGTT+CGG - chr6_4:12066853-12066872 None:intergenic 30.0%
CCTATTTAACAACCATCTAT+TGG - chr6_4:12066997-12067016 None:intergenic 30.0%
CCAATAGATGGTTGTTAAAT+AGG + chr6_4:12066994-12067013 Msa0977350:intron 30.0%
!!! TTTTTTTGTCATGAGTCTAG+TGG + chr6_4:12067051-12067070 Msa0977350:intron 30.0%
ATGTGTATTGTGTTTGTGTT+TGG + chr6_4:12067376-12067395 Msa0977350:intron 30.0%
GGATAATTGGTACAATAACA+TGG - chr6_4:12067482-12067501 None:intergenic 30.0%
! GATAACAGAAGTACAAAATC+AGG + chr6_4:12067546-12067565 Msa0977350:intron 30.0%
! AGCGTTTTTGATGAAAAAGA+AGG - chr6_4:12067697-12067716 None:intergenic 30.0%
!! ACAACTTGAAGCATTGCTAA+TGG + chr6_4:12063753-12063772 Msa0977350:five_prime_UTR 35.0%
! GAAAACAAGAGAAAGGTGTA+GGG - chr6_4:12063890-12063909 None:intergenic 35.0%
! AGAAAACAAGAGAAAGGTGT+AGG - chr6_4:12063891-12063910 None:intergenic 35.0%
!! CTTGGAACTTCATTTTTGGA+AGG - chr6_4:12063929-12063948 None:intergenic 35.0%
! CATAGAGATGCTCTTTTTCT+TGG - chr6_4:12063947-12063966 None:intergenic 35.0%
!! CAAGAAAAAGAGCATCTCTA+TGG + chr6_4:12063945-12063964 Msa0977350:CDS 35.0%
CCAAACAAAGGATAAGACAA+AGG - chr6_4:12064047-12064066 None:intergenic 35.0%
CCTTTGTCTTATCCTTTGTT+TGG + chr6_4:12064044-12064063 Msa0977350:CDS 35.0%
!!! GTGACATTTTTAGTGGTGAA+TGG + chr6_4:12064168-12064187 Msa0977350:CDS 35.0%
! GGAAAATCTATGGCTTTTGT+TGG + chr6_4:12064365-12064384 Msa0977350:CDS 35.0%
!! TGCTTTGGTGTTAAGTGATT+TGG + chr6_4:12064656-12064675 Msa0977350:intron 35.0%
GCTTCAATGACAATTCATAG+AGG + chr6_4:12064761-12064780 Msa0977350:intron 35.0%
TAATAAACCCCACAAAGTTG+AGG + chr6_4:12065194-12065213 Msa0977350:intron 35.0%
TATGCACACAAATTGGAGAT+TGG - chr6_4:12065383-12065402 None:intergenic 35.0%
ATCTGACTATGCACACAAAT+TGG - chr6_4:12065390-12065409 None:intergenic 35.0%
!! ACTAAGAGATTGGCTTCAAA+TGG + chr6_4:12065496-12065515 Msa0977350:intron 35.0%
GACAATTAACTCGTTGAACT+TGG + chr6_4:12065683-12065702 Msa0977350:intron 35.0%
TGTATATAGTTCGACTCAGT+TGG + chr6_4:12065775-12065794 Msa0977350:intron 35.0%
CACTATTGTTCTTAAACTCC+CGG - chr6_4:12066120-12066139 None:intergenic 35.0%
GGAGTTTAAGAACAATAGTG+AGG + chr6_4:12066120-12066139 Msa0977350:intron 35.0%
GTTTAAGAACAATAGTGAGG+AGG + chr6_4:12066123-12066142 Msa0977350:intron 35.0%
! CAAAATCTGTTGAAAGTGCA+GGG - chr6_4:12066675-12066694 None:intergenic 35.0%
!! CTTTCAACAGATTTTGGCAT+TGG + chr6_4:12066317-12066336 Msa0977350:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + chr6_4:12066340-12066359 Msa0977350:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG - chr6_4:12066584-12066603 None:intergenic 35.0%
! TGCCAAACAAAAAAAAGTGC+AGG - chr6_4:12066583-12066602 None:intergenic 35.0%
CATTATTTGTCCAAAGTGCA+GGG + chr6_4:12066524-12066543 Msa0977350:intron 35.0%
! TGCCAAACAAAAAAAAGTGC+AGG + chr6_4:12066583-12066602 Msa0977350:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG + chr6_4:12066584-12066603 Msa0977350:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG - chr6_4:12066340-12066359 None:intergenic 35.0%
! TGCCAAACAAAAAAAAGTGC+AGG + chr6_4:12066583-12066602 Msa0977350:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG + chr6_4:12066584-12066603 Msa0977350:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG - chr6_4:12066340-12066359 None:intergenic 35.0%
!! CTTTCAACAGATTTTGGCAT+TGG - chr6_4:12066317-12066336 None:intergenic 35.0%
! CAAAATCTGTTGAAAGTGCA+GGG + chr6_4:12066675-12066694 Msa0977350:intron 35.0%
CCGAACTCGAGTTAAAAAAA+AGG + chr6_4:12066850-12066869 Msa0977350:intron 35.0%
TAATGTATTACCATTAGGGC+TGG - chr6_4:12066966-12066985 None:intergenic 35.0%
ACGGTACATATGCACATAAT+GGG - chr6_4:12067021-12067040 None:intergenic 35.0%
GGTTAGAGAAATTCACCTTT+AGG + chr6_4:12067072-12067091 Msa0977350:intron 35.0%
!! TCACCTTTAGGATGAATAAG+TGG + chr6_4:12067084-12067103 Msa0977350:intron 35.0%
!! CACCTTTAGGATGAATAAGT+GGG + chr6_4:12067085-12067104 Msa0977350:intron 35.0%
ATCCCACTTATTCATCCTAA+AGG - chr6_4:12067090-12067109 None:intergenic 35.0%
AAATCATAACTCACTTGGCA+AGG - chr6_4:12067156-12067175 None:intergenic 35.0%
ATGCGAAATCATAACTCACT+TGG - chr6_4:12067161-12067180 None:intergenic 35.0%
GCATTTGAACATCATAAGGT+CGG - chr6_4:12067220-12067239 None:intergenic 35.0%
AGTCGCATTTGAACATCATA+AGG - chr6_4:12067224-12067243 None:intergenic 35.0%
TGTATTGTGTTTGTGTTTGG+AGG + chr6_4:12067379-12067398 Msa0977350:intron 35.0%
GTATTGTGTTTGTGTTTGGA+GGG + chr6_4:12067380-12067399 Msa0977350:intron 35.0%
AACATGGCATATGATGTGTA+AGG - chr6_4:12067466-12067485 None:intergenic 35.0%
! AAGTGATGATGTGGGATAAT+TGG - chr6_4:12067495-12067514 None:intergenic 35.0%
TATGCATCTCGCTGTTATAA+AGG - chr6_4:12067602-12067621 None:intergenic 35.0%
TATGTGAGGGATGAAAAAGA+AGG - chr6_4:12067754-12067773 None:intergenic 35.0%
GTAGGGAAATAGGAGGATAA+GGG - chr6_4:12063873-12063892 None:intergenic 40.0%
TGTAGGGAAATAGGAGGATA+AGG - chr6_4:12063874-12063893 None:intergenic 40.0%
! AGAGAAAGGTGTAGGGAAAT+AGG - chr6_4:12063883-12063902 None:intergenic 40.0%
!! CTTCATTTTTGGAAGGGTTG+TGG - chr6_4:12063922-12063941 None:intergenic 40.0%
CACTTCATGAACTCAGAATC+TGG - chr6_4:12064278-12064297 None:intergenic 40.0%
CAGATTCTGAGTTCATGAAG+TGG + chr6_4:12064276-12064295 Msa0977350:CDS 40.0%
! GCTTTTGTTGGAGATTCTGT+TGG + chr6_4:12064377-12064396 Msa0977350:CDS 40.0%
! GTGTTAAGTGATTTGGCATG+TGG + chr6_4:12064663-12064682 Msa0977350:intron 40.0%
!! ATAGGTTTTGGTCTAGTGGT+TGG + chr6_4:12064991-12065010 Msa0977350:intron 40.0%
!! TTTTGGTCTAGTGGTTGGTT+TGG + chr6_4:12064996-12065015 Msa0977350:intron 40.0%
!! TTTGGTCTAGTGGTTGGTTT+GGG + chr6_4:12064997-12065016 Msa0977350:intron 40.0%
AGTTGGAGCAAAGCTCTATA+TGG - chr6_4:12065091-12065110 None:intergenic 40.0%
CTTTGCTCCAACTTTAGATG+AGG + chr6_4:12065098-12065117 Msa0977350:intron 40.0%
! GCAAAAGCCTCATCTAAAGT+TGG - chr6_4:12065108-12065127 None:intergenic 40.0%
! TTAGATGAGGCTTTTGCAAG+TGG + chr6_4:12065111-12065130 Msa0977350:intron 40.0%
! TAGATGAGGCTTTTGCAAGT+GGG + chr6_4:12065112-12065131 Msa0977350:intron 40.0%
!! ATTGGTCCCATTGGATTAGT+CGG + chr6_4:12065142-12065161 Msa0977350:intron 40.0%
ATCTGACCGACTAATCCAAT+GGG - chr6_4:12065151-12065170 None:intergenic 40.0%
TATCTGACCGACTAATCCAA+TGG - chr6_4:12065152-12065171 None:intergenic 40.0%
!! TTGGATTAGTCGGTCAGATA+CGG + chr6_4:12065152-12065171 Msa0977350:intron 40.0%
AGATTGGTGGAGTCAAGTTA+TGG - chr6_4:12065367-12065386 None:intergenic 40.0%
! CAAATGAGGCATACTTTTGC+AGG + chr6_4:12066054-12066073 Msa0977350:intron 40.0%
ATTGCAATTAGTCCCACATC+CGG + chr6_4:12066098-12066117 Msa0977350:intron 40.0%
! CCAAAATCTGTTGAAAGTGC+AGG - chr6_4:12066674-12066693 None:intergenic 40.0%
! CCTGCACTTTCAACAGATTT+TGG + chr6_4:12066311-12066330 Msa0977350:intron 40.0%
CCTGCACTTTGGACAAATAA+TGG - chr6_4:12066526-12066545 None:intergenic 40.0%
CCATTATTTGTCCAAAGTGC+AGG + chr6_4:12066523-12066542 Msa0977350:intron 40.0%
! CCTGCACTTTCAACAGATTT+TGG - chr6_4:12066311-12066330 None:intergenic 40.0%
! CCAAAATCTGTTGAAAGTGC+AGG + chr6_4:12066674-12066693 Msa0977350:intron 40.0%
CGGTACATATGCACATAATG+GGG - chr6_4:12067020-12067039 None:intergenic 40.0%
CACGGTACATATGCACATAA+TGG - chr6_4:12067022-12067041 None:intergenic 40.0%
ATGAATAAGTGGGATGTCTG+AGG + chr6_4:12067095-12067114 Msa0977350:intron 40.0%
TGTATAATACATGTAGGGGC+CGG - chr6_4:12067128-12067147 None:intergenic 40.0%
ATGCGACTTTAGCAACAGAA+AGG + chr6_4:12067236-12067255 Msa0977350:intron 40.0%
TGCGACTTTAGCAACAGAAA+GGG + chr6_4:12067237-12067256 Msa0977350:intron 40.0%
TCGGTTACTGTTTGTGTTAC+AGG - chr6_4:12067731-12067750 None:intergenic 40.0%
TGAGGGATGAAAAAGAAGGT+CGG - chr6_4:12067750-12067769 None:intergenic 40.0%
! GAAAGGTGTAGGGAAATAGG+AGG - chr6_4:12063880-12063899 None:intergenic 45.0%
GAATGGGTGCCAAATCCAAA+AGG + chr6_4:12064185-12064204 Msa0977350:CDS 45.0%
CTGAGTTCATGAAGTGGAGA+TGG + chr6_4:12064282-12064301 Msa0977350:CDS 45.0%
!! TAGTGGTTGGTTTGGGATCT+TGG + chr6_4:12065004-12065023 Msa0977350:intron 45.0%
!! AAGAGCACCTCAACTTTGTG+GGG - chr6_4:12065204-12065223 None:intergenic 45.0%
!! GAAGAGCACCTCAACTTTGT+GGG - chr6_4:12065205-12065224 None:intergenic 45.0%
!! TGAAGAGCACCTCAACTTTG+TGG - chr6_4:12065206-12065225 None:intergenic 45.0%
ATCCAGCCTCAACATTGAGT+AGG + chr6_4:12065257-12065276 Msa0977350:intron 45.0%
GTCAGACCTACTCAATGTTG+AGG - chr6_4:12065266-12065285 None:intergenic 45.0%
GCACACAAATTGGAGATTGG+TGG - chr6_4:12065380-12065399 None:intergenic 45.0%
TTGCAATTAGTCCCACATCC+GGG + chr6_4:12066099-12066118 Msa0977350:intron 45.0%
GTTCTTAAACTCCCGGATGT+GGG - chr6_4:12066113-12066132 None:intergenic 45.0%
TGTTCTTAAACTCCCGGATG+TGG - chr6_4:12066114-12066133 None:intergenic 45.0%
AGAACAATAGTGAGGAGGAG+TGG + chr6_4:12066128-12066147 Msa0977350:intron 45.0%
CCACGTGGCATGAAATGATT+GGG - chr6_4:12066495-12066514 None:intergenic 45.0%
!! ATAATGGTATTGGTGCCACG+TGG - chr6_4:12066510-12066529 None:intergenic 45.0%
AGTTCACGAACAACTCGGTT+CGG - chr6_4:12066821-12066840 None:intergenic 45.0%
CGACTCGATAAGAATTGGCT+CGG - chr6_4:12066904-12066923 None:intergenic 45.0%
! CGACTCGACTCGATAAGAAT+TGG - chr6_4:12066909-12066928 None:intergenic 45.0%
GTATAATACATGTAGGGGCC+GGG - chr6_4:12067127-12067146 None:intergenic 45.0%
GTGGATGAGTTCAACGATGA+GGG + chr6_4:12067331-12067350 Msa0977350:intron 45.0%
AAAGAAGGTCGGTTACCCTT+TGG - chr6_4:12067682-12067701 None:intergenic 45.0%
!! GCAAGGCTTTGGATATGTGA+GGG - chr6_4:12067767-12067786 None:intergenic 45.0%
AAAGGAAGGCTACATCGCAA+AGG - chr6_4:12067789-12067808 None:intergenic 45.0%
! TGCGATGTAGCCTTCCTTTT+CGG + chr6_4:12067790-12067809 Msa0977350:intron 45.0%
ATGGAGGTTGAGGAAGATGA+AGG - chr6_4:12067936-12067955 None:intergenic 45.0%
!!! ATTAAAAGTATTTTAATAAA+GGG - chr6_4:12064973-12064992 None:intergenic 5.0%
!!! TATTAAAAGTATTTTAATAA+AGG - chr6_4:12064974-12064993 None:intergenic 5.0%
!!! TTTATTAAAATACTTTTAAT+AGG + chr6_4:12064973-12064992 Msa0977350:intron 5.0%
!!! CAATTTTTATTAAAAAAAAA+TGG + chr6_4:12065337-12065356 Msa0977350:intron 5.0%
!!! TTACTTTATTTAAAATAATA+AGG - chr6_4:12066719-12066738 None:intergenic 5.0%
!!! TATTATTTTAAATAAAGTAA+AGG + chr6_4:12066719-12066738 Msa0977350:intron 5.0%
! TGGTTTGGGATCTTGGAGTG+TGG + chr6_4:12065011-12065030 Msa0977350:intron 50.0%
CTTGGAGTGTGGAGCTTTCA+AGG + chr6_4:12065022-12065041 Msa0977350:intron 50.0%
TGTGGAGCTTTCAAGGTCTC+AGG + chr6_4:12065029-12065048 Msa0977350:intron 50.0%
! ATGAGGCTTTTGCAAGTGGG+AGG + chr6_4:12065115-12065134 Msa0977350:intron 50.0%
GACCTACTCAATGTTGAGGC+TGG - chr6_4:12065262-12065281 None:intergenic 50.0%
CGGCTCAAGTTCAGCTCATT+TGG - chr6_4:12065717-12065736 None:intergenic 50.0%
CCCAATCATTTCATGCCACG+TGG + chr6_4:12066492-12066511 Msa0977350:intron 50.0%
GCCACGTGGCATGAAATGAT+TGG - chr6_4:12066496-12066515 None:intergenic 50.0%
!! TGGTATTGGTCCCTGCACTT+TGG - chr6_4:12066451-12066470 None:intergenic 50.0%
CGACTCATTTCCAGCCCTAA+TGG + chr6_4:12066953-12066972 Msa0977350:intron 50.0%
AAGACGGCCATGTTGGACAA+CGG + chr6_4:12067285-12067304 Msa0977350:intron 50.0%
GGTGGATGAGTTCAACGATG+AGG + chr6_4:12067330-12067349 Msa0977350:intron 50.0%
!! GGCAAGGCTTTGGATATGTG+AGG - chr6_4:12067768-12067787 None:intergenic 50.0%
ACATCGCAAAGGCAAGGCTT+TGG - chr6_4:12067778-12067797 None:intergenic 50.0%
AAGGCTACATCGCAAAGGCA+AGG - chr6_4:12067784-12067803 None:intergenic 50.0%
! GATGTAGCCTTCCTTTTCGG+TGG + chr6_4:12067793-12067812 Msa0977350:intron 50.0%
ACAACGGAAAGGGAAAGAGG+TGG - chr6_4:12067846-12067865 None:intergenic 50.0%
AGAAGAGGGGACAACGGAAA+GGG - chr6_4:12067856-12067875 None:intergenic 50.0%
AAGAAGAGGGGACAACGGAA+AGG - chr6_4:12067857-12067876 None:intergenic 50.0%
TTCCGTTGTCCCCTCTTCTT+AGG + chr6_4:12067857-12067876 Msa0977350:intron 50.0%
AGCCTAAGAAGAGGGGACAA+CGG - chr6_4:12067862-12067881 None:intergenic 50.0%
TGAAAAAGACATGCCCCCGA+AGG - chr6_4:12067885-12067904 None:intergenic 50.0%
!! TTCGGGGGCATGTCTTTTTC+AGG + chr6_4:12067884-12067903 Msa0977350:intron 50.0%
!! AACAACGGTGATGGAGGTTG+AGG - chr6_4:12067946-12067965 None:intergenic 50.0%
CAACCTCCATCACCGTTGTT+TGG + chr6_4:12067946-12067965 Msa0977350:CDS 50.0%
! TCACCAAACAACGGTGATGG+AGG - chr6_4:12067952-12067971 None:intergenic 50.0%
! AGGCTTTTGCAAGTGGGAGG+TGG + chr6_4:12065118-12065137 Msa0977350:intron 55.0%
! GGCTTTTGCAAGTGGGAGGT+GGG + chr6_4:12065119-12065138 Msa0977350:intron 55.0%
TTGCAAGTGGGAGGTGGGAT+TGG + chr6_4:12065124-12065143 Msa0977350:intron 55.0%
!! ACAACTCGGTTCGGCTCGTT+AGG - chr6_4:12066812-12066831 None:intergenic 55.0%
! GGATGTCTGAGGTTCGAACC+CGG + chr6_4:12067106-12067125 Msa0977350:intron 55.0%
GCGACGAAGAGAAGCCAAGA+CGG + chr6_4:12067269-12067288 Msa0977350:intron 55.0%
AGAAGCCAAGACGGCCATGT+TGG + chr6_4:12067278-12067297 Msa0977350:intron 55.0%
GTTGTCCAACATGGCCGTCT+TGG - chr6_4:12067286-12067305 None:intergenic 55.0%
! GGAGGTGCGACAATGTGTGA+CGG + chr6_4:12067306-12067325 Msa0977350:intron 55.0%
GGAAAGGGAAAGAGGTGGTG+CGG - chr6_4:12067841-12067860 None:intergenic 55.0%
GGGACAACGGAAAGGGAAAG+AGG - chr6_4:12067849-12067868 None:intergenic 55.0%
CCGAAGGAGCCTAAGAAGAG+GGG - chr6_4:12067869-12067888 None:intergenic 55.0%
CCCCTCTTCTTAGGCTCCTT+CGG + chr6_4:12067866-12067885 Msa0977350:intron 55.0%
CCCGAAGGAGCCTAAGAAGA+GGG - chr6_4:12067870-12067889 None:intergenic 55.0%
CCCTCTTCTTAGGCTCCTTC+GGG + chr6_4:12067867-12067886 Msa0977350:intron 55.0%
CCTCTTCTTAGGCTCCTTCG+GGG + chr6_4:12067868-12067887 Msa0977350:intron 55.0%
CTCTTCTTAGGCTCCTTCGG+GGG + chr6_4:12067869-12067888 Msa0977350:intron 55.0%
AAGGTAGCACCGCCAAAGGA+CGG - chr6_4:12067917-12067936 None:intergenic 55.0%
GATGAAGGTAGCACCGCCAA+AGG - chr6_4:12067921-12067940 None:intergenic 55.0%
!! GGAGGTGGGATTGGTCCCAT+TGG + chr6_4:12065133-12065152 Msa0977350:intron 60.0%
AGTCGAGTCGAGCTCAGACG+AGG + chr6_4:12066919-12066938 Msa0977350:intron 60.0%
ACGGCCATGTTGGACAACGG+AGG + chr6_4:12067288-12067307 Msa0977350:intron 60.0%
CGCACCTCCGTTGTCCAACA+TGG - chr6_4:12067295-12067314 None:intergenic 60.0%
GGTGCGACAATGTGTGACGG+TGG + chr6_4:12067309-12067328 Msa0977350:intron 60.0%
GCGACAATGTGTGACGGTGG+TGG + chr6_4:12067312-12067331 Msa0977350:intron 60.0%
CGTCGCACCACCGAAAAGGA+AGG - chr6_4:12067803-12067822 None:intergenic 60.0%
CACTCGTCGCACCACCGAAA+AGG - chr6_4:12067807-12067826 None:intergenic 60.0%
AAGGGAAAGAGGTGGTGCGG+AGG - chr6_4:12067838-12067857 None:intergenic 60.0%
CCCCGAAGGAGCCTAAGAAG+AGG - chr6_4:12067871-12067890 None:intergenic 60.0%
AGAGGTGGTGCGGAGGACGA+AGG - chr6_4:12067831-12067850 None:intergenic 65.0%
TCAGGTTCGCCGCCGTCCTT+TGG + chr6_4:12067902-12067921 Msa0977350:intron 65.0%
GTAGCACCGCCAAAGGACGG+CGG - chr6_4:12067914-12067933 None:intergenic 65.0%
GGTTCGCCGCCGTCCTTTGG+CGG + chr6_4:12067905-12067924 Msa0977350:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 12063691 12067971 12063691 ID=Msa0977350;Name=Msa0977350
chr6_4 mRNA 12063691 12067971 12063691 ID=Msa0977350-mRNA-1;Parent=Msa0977350;Name=Msa0977350-mRNA-1;_AED=0.23;_eAED=0.23;_QI=245|0|0.5|0.5|1|1|2|0|189
chr6_4 exon 12063691 12064439 12063691 ID=Msa0977350-mRNA-1:exon:4254;Parent=Msa0977350-mRNA-1
chr6_4 exon 12067906 12067971 12067906 ID=Msa0977350-mRNA-1:exon:4255;Parent=Msa0977350-mRNA-1
chr6_4 five_prime_UTR 12063691 12063935 12063691 ID=Msa0977350-mRNA-1:five_prime_utr;Parent=Msa0977350-mRNA-1
chr6_4 CDS 12063936 12064439 12063936 ID=Msa0977350-mRNA-1:cds;Parent=Msa0977350-mRNA-1
chr6_4 CDS 12067906 12067971 12067906 ID=Msa0977350-mRNA-1:cds;Parent=Msa0977350-mRNA-1
Gene Sequence

>Msa0977350

ATGAAGTTCCAAGAAAAAGAGCATCTCTATGGAAACAATAACAAAAAACAAATGTTACCAAAAATAATTTTATTAGCAATCTTTGTCATAATTATAGTTCTTGTCACCCCTTTGTCTTATCCTTTGTTTGGTTCATCATTTCTCTTGATGATGAGCAAGTCTAAAGAACCAAACTCTTCAAATGTTGATTCAATCGAGAAGGAAAATTTACCTTCAACATCTTTGAAAAATTGTGACATTTTTAGTGGTGAATGGGTGCCAAATCCAAAAGGACCATATTACACAAACAAAACATGTTGGGCAATTCATGAGCATCAAAATTGCATGAAGTATGGTAGGCCAGATTCTGAGTTCATGAAGTGGAGATGGAAGCCAAATGAGTGTGAATTACCAATTTTCAATCCTTTTCAATTTCTTGAAATTGTTAGAGGAAAATCTATGGCTTTTGTTGGAGATTCTGTTGGTAGAAATCACATGCAGTCATTGATTTGTCTTCTATCAAGGGTTCGCCGCCGTCCTTTGGCGGTGCTACCTTCATCTTCCTCAACCTCCATCACCGTTGTTTGGTGA
Protein sequence

>Msa0977350

MKFQEKEHLYGNNNKKQMLPKIILLAIFVIIIVLVTPLSYPLFGSSFLLMMSKSKEPNSSNVDSIEKENLPSTSLKNCDIFSGEWVPNPKGPYYTNKTCWAIHEHQNCMKYGRPDSEFMKWRWKPNECELPIFNPFQFLEIVRGKSMAFVGDSVGRNHMQSLICLLSRVRRRPLAVLPSSSSTSITVVW*