AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0940850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0940850 MtrunA17_Chr6g0456691 99.078 434 4 0 1 434 1 434 0.0 907
Msa0940850 MtrunA17_Chr6g0456681 53.953 430 179 7 1 426 1 415 9.00e-167 475
Msa0940850 MtrunA17_Chr7g0221281 76.033 242 58 0 184 425 1 242 2.68e-145 414
Msa0940850 MtrunA17_Chr2g0283851 51.695 354 149 11 79 419 56 400 1.06e-121 360
Msa0940850 MtrunA17_Chr8g0347321 44.505 364 194 3 63 419 77 439 3.10e-116 347
Msa0940850 MtrunA17_Chr8g0387921 41.429 420 226 5 12 419 8 419 7.15e-115 343
Msa0940850 MtrunA17_Chr7g0221271 71.707 205 57 1 1 204 1 205 3.31e-110 323
Msa0940850 MtrunA17_Chr6g0451321 43.767 361 195 6 71 427 109 465 3.64e-109 330
Msa0940850 MtrunA17_Chr5g0414041 45.355 366 183 9 65 420 76 434 1.09e-104 317
Msa0940850 MtrunA17_Chr8g0391481 40.731 383 205 8 61 430 10 383 1.74e-104 315
Msa0940850 MtrunA17_Chr5g0414061 43.785 354 180 9 78 420 94 439 3.09e-103 314
Msa0940850 MtrunA17_Chr7g0226991 41.620 358 187 8 76 420 55 403 4.51e-101 307
Msa0940850 MtrunA17_Chr3g0140371 42.210 353 185 9 78 420 18 361 4.04e-97 295
Msa0940850 MtrunA17_Chr5g0414091 37.590 415 241 10 17 420 25 432 1.64e-93 288
Msa0940850 MtrunA17_Chr5g0414051 39.831 354 195 10 78 420 75 421 1.10e-91 284
Msa0940850 MtrunA17_Chr7g0221291 69.591 171 51 1 1 170 1 171 3.06e-84 255
Msa0940850 MtrunA17_Chr1g0188191 35.417 384 219 9 52 422 217 584 2.82e-78 253
Msa0940850 MtrunA17_Chr6g0476041 34.250 400 239 9 41 422 124 517 1.38e-76 247
Msa0940850 MtrunA17_Chr7g0259711 31.050 438 256 11 20 433 31 446 6.81e-57 194
Msa0940850 MtrunA17_Chr2g0287901 33.333 378 221 13 54 419 79 437 1.43e-51 180
Msa0940850 MtrunA17_Chr1g0175671 31.152 382 195 11 74 422 166 512 7.36e-49 174
Msa0940850 MtrunA17_Chr5g0414081 38.942 208 116 6 231 428 2 208 1.84e-48 164
Msa0940850 MtrunA17_Chr7g0258851 31.169 385 211 13 74 432 244 600 2.03e-47 171
Msa0940850 MtrunA17_Chr3g0105301 30.114 352 220 9 77 419 42 376 8.22e-46 162
Msa0940850 MtrunA17_Chr3g0113671 31.549 355 215 11 76 415 104 445 2.06e-45 163
Msa0940850 MtrunA17_Chr4g0071391 28.302 371 228 11 74 427 105 454 7.25e-45 162
Msa0940850 MtrunA17_Chr5g0413271 29.459 370 218 11 67 419 133 476 1.15e-44 162
Msa0940850 MtrunA17_Chr7g0269991 31.302 361 209 9 78 424 137 472 1.75e-44 161
Msa0940850 MtrunA17_Chr5g0430371 30.000 360 220 10 76 419 56 399 7.36e-44 158
Msa0940850 MtrunA17_Chr7g0243301 31.302 361 224 12 69 415 55 405 6.65e-43 155
Msa0940850 MtrunA17_Chr1g0213281 28.504 421 241 13 40 427 134 527 1.56e-42 157
Msa0940850 MtrunA17_Chr8g0368461 30.334 389 218 13 63 420 164 530 2.43e-42 156
Msa0940850 MtrunA17_Chr8g0360521 28.689 366 214 11 76 419 69 409 3.84e-42 154
Msa0940850 MtrunA17_Chr4g0005491 31.421 366 226 14 64 415 49 403 7.53e-42 152
Msa0940850 MtrunA17_Chr4g0068111 30.748 361 222 10 72 419 108 453 1.89e-41 153
Msa0940850 MtrunA17_Chr8g0384151 28.571 357 222 11 75 422 87 419 1.65e-40 149
Msa0940850 MtrunA17_Chr4g0070341 28.571 399 230 14 52 419 97 471 5.77e-40 149
Msa0940850 MtrunA17_Chr6g0455901 27.676 383 215 11 77 426 70 423 7.98e-40 147
Msa0940850 MtrunA17_Chr5g0437601 27.650 434 261 16 14 419 16 424 1.30e-39 147
Msa0940850 MtrunA17_Chr4g0049421 27.701 361 226 7 78 419 48 392 1.11e-38 144
Msa0940850 MtrunA17_Chr3g0114101 29.609 358 220 12 78 419 89 430 1.16e-38 144
Msa0940850 MtrunA17_Chr4g0006991 29.609 358 220 12 78 419 86 427 1.57e-38 144
Msa0940850 MtrunA17_Chr2g0283581 30.769 351 204 10 78 421 42 360 2.07e-38 142
Msa0940850 MtrunA17_Chr3g0085081 28.329 353 217 10 69 415 22 344 6.45e-38 140
Msa0940850 MtrunA17_Chr5g0437291 29.050 358 223 13 76 415 163 507 1.24e-37 143
Msa0940850 MtrunA17_Chr3g0085071 27.887 355 216 9 69 415 37 359 5.87e-37 138
Msa0940850 MtrunA17_Chr3g0091031 28.329 353 217 11 69 415 22 344 1.11e-36 137
Msa0940850 MtrunA17_Chr2g0325481 29.915 351 203 11 78 419 50 366 1.93e-36 137
Msa0940850 MtrunA17_Chr4g0045951 29.014 355 212 9 75 421 42 364 2.66e-36 136
Msa0940850 MtrunA17_Chr4g0045941 28.895 353 213 9 71 415 24 346 4.58e-35 133
Msa0940850 MtrunA17_Chr4g0005481 29.363 361 224 12 73 419 103 446 5.60e-35 134
Msa0940850 MtrunA17_Chr8g0384421 27.224 371 210 11 78 419 133 472 8.38e-35 134
Msa0940850 MtrunA17_Chr7g0242701 29.558 362 215 14 78 419 86 427 2.31e-34 132
Msa0940850 MtrunA17_Chr2g0314801 28.409 352 219 9 74 419 29 353 7.52e-34 129
Msa0940850 MtrunA17_Chr4g0041011 27.930 401 240 14 30 419 1 363 5.13e-33 127
Msa0940850 MtrunA17_Chr3g0097891 27.714 350 217 9 77 419 30 350 1.40e-32 126
Msa0940850 MtrunA17_Chr5g0413851 28.900 391 226 15 39 419 11 359 8.63e-32 124
Msa0940850 MtrunA17_Chr1g0171171 26.214 412 252 12 20 419 4 375 9.87e-32 124
Msa0940850 MtrunA17_Chr1g0210771 27.042 355 223 9 74 419 55 382 2.84e-31 123
Msa0940850 MtrunA17_Chr3g0126021 27.273 363 221 11 73 419 124 459 4.90e-31 124
Msa0940850 MtrunA17_Chr2g0314791 29.178 353 203 11 78 419 29 345 1.04e-29 118
Msa0940850 MtrunA17_Chr1g0209921 32.778 180 105 6 76 250 42 210 1.42e-21 94.0
Msa0940850 MtrunA17_Chr1g0178081 30.688 189 116 5 72 249 49 233 8.93e-20 90.5
Msa0940850 MtrunA17_Chr1g0178081 33.588 131 72 5 297 419 218 341 8.55e-12 66.2
Msa0940850 MtrunA17_Chr7g0275501 52.239 67 29 2 354 418 3 68 1.68e-14 68.2
Msa0940850 MtrunA17_Chr2g0287931 36.975 119 62 5 138 247 2 116 4.73e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0940850 AT5G15900.2 61.029 408 152 4 21 426 33 435 0.0 545
Msa0940850 AT5G15900.1 61.029 408 152 4 21 426 14 416 0.0 545
Msa0940850 AT3G02440.2 62.029 345 127 4 78 420 135 477 2.68e-164 471
Msa0940850 AT3G02440.1 62.029 345 127 4 78 420 127 469 4.20e-164 471
Msa0940850 AT5G15890.1 54.005 387 169 5 37 422 147 525 5.78e-163 469
Msa0940850 AT1G01430.1 41.363 411 222 9 30 429 54 456 2.34e-112 338
Msa0940850 AT3G28150.1 40.306 392 224 4 34 423 31 414 9.97e-111 332
Msa0940850 AT4G01080.1 46.133 375 164 11 70 423 78 435 1.41e-106 323
Msa0940850 AT4G23790.1 37.198 414 236 8 29 419 15 427 1.83e-103 314
Msa0940850 AT1G70230.1 36.659 431 227 10 14 420 4 412 1.83e-100 306
Msa0940850 AT4G11090.1 37.108 415 242 9 27 424 18 430 8.34e-100 305
Msa0940850 AT4G25360.1 33.586 396 240 7 50 426 140 531 3.85e-77 249
Msa0940850 AT4G25360.2 33.586 396 240 7 50 426 140 531 3.85e-77 249
Msa0940850 AT5G51640.1 34.748 377 228 7 59 422 120 491 1.62e-75 244
Msa0940850 AT3G06080.2 33.962 371 218 11 74 430 99 456 9.51e-56 191
Msa0940850 AT5G19160.1 31.757 444 247 17 20 428 32 454 2.28e-52 182
Msa0940850 AT3G12060.1 32.546 381 215 13 74 433 192 551 2.08e-50 179
Msa0940850 AT5G64470.3 32.500 360 205 11 78 419 55 394 8.22e-49 171
Msa0940850 AT2G14530.1 29.833 419 225 16 46 424 22 411 1.19e-48 171
Msa0940850 AT5G06700.1 32.105 380 218 11 72 432 249 607 1.05e-47 172
Msa0940850 AT5G64470.2 32.240 366 204 12 78 419 55 400 2.70e-47 167
Msa0940850 AT1G60790.1 30.025 403 236 12 43 424 161 538 4.06e-47 170
Msa0940850 AT5G06230.2 30.458 371 212 12 73 419 16 364 4.78e-46 163
Msa0940850 AT3G62390.1 30.357 392 218 11 60 423 111 475 5.24e-46 166
Msa0940850 AT5G20590.1 29.396 381 226 12 61 422 126 482 7.16e-46 166
Msa0940850 AT5G06230.1 30.458 371 212 12 73 419 57 405 1.07e-45 163
Msa0940850 AT3G11570.1 29.493 434 251 13 15 427 28 427 3.67e-45 162
Msa0940850 AT2G30010.1 31.680 363 209 12 76 419 54 396 1.32e-43 157
Msa0940850 AT5G64020.1 30.133 375 206 13 78 419 57 408 1.43e-43 157
Msa0940850 AT2G30010.2 31.768 362 208 12 77 419 98 439 1.61e-43 158
Msa0940850 AT5G49340.1 31.139 395 226 13 45 419 73 441 2.03e-43 158
Msa0940850 AT2G40160.2 28.501 407 238 15 51 431 58 437 3.97e-43 157
Msa0940850 AT1G73140.1 28.771 358 224 9 76 419 65 405 8.99e-43 155
Msa0940850 AT2G40160.1 28.767 365 217 12 75 415 74 419 4.71e-42 154
Msa0940850 AT1G48880.1 30.120 415 237 14 17 419 66 439 6.83e-42 154
Msa0940850 AT2G40320.1 28.710 411 263 10 24 419 27 422 1.12e-41 153
Msa0940850 AT5G58600.1 29.398 415 253 13 24 419 7 400 5.09e-41 150
Msa0940850 AT3G55990.1 29.859 355 221 11 76 415 138 479 1.37e-40 151
Msa0940850 AT2G40150.1 28.255 361 237 10 78 423 71 424 4.72e-40 148
Msa0940850 AT3G11030.1 30.028 363 217 12 76 419 104 448 6.82e-39 146
Msa0940850 AT5G19160.2 31.546 317 180 10 20 312 32 335 2.23e-38 142
Msa0940850 AT2G42570.1 31.332 383 213 14 48 419 21 364 2.24e-38 142
Msa0940850 AT2G38320.1 29.594 419 256 16 15 415 3 400 5.60e-38 142
Msa0940850 AT1G29050.1 27.841 352 216 8 77 421 60 380 7.13e-38 142
Msa0940850 AT5G01360.2 26.741 359 234 10 76 419 34 378 3.51e-37 140
Msa0940850 AT5G01360.1 26.816 358 235 9 76 419 90 434 7.75e-37 140
Msa0940850 AT2G30900.1 30.390 385 220 17 47 419 17 365 8.01e-37 138
Msa0940850 AT2G34070.1 27.089 347 226 7 77 421 64 385 1.12e-36 138
Msa0940850 AT3G06080.1 35.458 251 140 8 74 312 99 339 3.54e-36 136
Msa0940850 AT5G20680.6 27.500 400 226 14 55 419 87 457 4.34e-36 138
Msa0940850 AT5G20680.4 27.500 400 226 14 55 419 181 551 7.09e-36 139
Msa0940850 AT5G20680.1 27.500 400 226 14 55 419 181 551 7.09e-36 139
Msa0940850 AT5G20680.3 27.500 400 226 14 55 419 181 551 7.09e-36 139
Msa0940850 AT5G20680.5 27.500 400 226 14 55 419 181 551 7.09e-36 139
Msa0940850 AT5G20680.2 27.500 400 226 14 55 419 163 533 8.22e-36 139
Msa0940850 AT5G01620.2 28.650 363 219 11 76 419 108 449 1.20e-35 137
Msa0940850 AT5G01620.1 28.650 363 219 11 76 419 108 449 1.20e-35 137
Msa0940850 AT5G01620.3 28.650 363 219 11 76 419 116 457 1.78e-35 136
Msa0940850 AT2G37720.1 28.496 379 218 13 68 419 130 482 1.84e-35 137
Msa0940850 AT3G14850.2 28.612 353 209 11 74 415 30 350 1.52e-33 129
Msa0940850 AT5G64470.1 31.250 272 159 7 78 333 55 314 2.59e-33 128
Msa0940850 AT5G64470.4 31.136 273 160 7 78 334 55 315 3.27e-33 127
Msa0940850 AT2G31110.2 27.806 392 238 11 35 419 9 362 4.85e-32 125
Msa0940850 AT2G38320.2 29.630 324 199 12 108 415 7 317 4.30e-30 119
Msa0940850 AT5G58600.2 29.293 297 187 8 24 311 7 289 1.74e-29 117
Msa0940850 AT1G78710.1 27.123 365 221 12 66 419 26 356 3.04e-29 117
Msa0940850 AT3G62390.2 28.881 277 162 7 60 314 111 374 4.37e-29 118
Msa0940850 AT2G40160.3 31.707 205 124 4 51 251 58 250 1.51e-27 112
Msa0940850 AT5G06230.3 29.057 265 152 9 73 315 57 307 2.51e-27 111
Msa0940850 AT5G20590.2 28.464 267 161 8 61 312 126 377 4.15e-27 112
Msa0940850 AT3G54260.1 24.860 358 219 10 78 419 51 374 5.56e-25 105
Msa0940850 AT2G30900.2 37.500 160 93 4 47 204 17 171 1.29e-23 100
Msa0940850 AT2G31110.3 29.767 215 135 4 35 249 9 207 1.66e-20 91.3
Msa0940850 AT1G78710.2 29.189 185 120 4 66 249 19 193 3.87e-17 82.0
Msa0940850 AT2G34070.2 24.000 275 182 7 149 421 2 251 9.97e-15 74.3
Msa0940850 AT3G14850.1 26.087 276 165 10 149 415 2 247 7.33e-13 68.6

Find 94 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAAATGGTTTGAAATTT+AGG 0.143773 6_3:-13681547 Msa0940850:CDS
CCAATATTTAAGTCTATTAA+TGG 0.170157 6_3:-13686027 Msa0940850:five_prime_UTR
CCATTAATAGACTTAAATAT+TGG 0.193373 6_3:+13686027 None:intergenic
ATTTCACCATGGCTGCTTAT+TGG 0.198427 6_3:-13682048 Msa0940850:CDS
CTTGCCTCATTACTCTTAAA+TGG 0.206869 6_3:+13681641 None:intergenic
AAGGGTAATGAAAGAAGTTT+TGG 0.266458 6_3:+13685897 None:intergenic
AGAGAAAGGTGTAGGGAAAT+AGG 0.277763 6_3:+13685869 None:intergenic
AATTGAAAAGGATTGAAAAT+TGG 0.281299 6_3:+13685423 None:intergenic
ACTGATTTAACAATGTATTA+TGG 0.295531 6_3:-13681806 Msa0940850:CDS
TTAAGGGTGTGACATTTCTT+AGG 0.298839 6_3:-13681730 Msa0940850:CDS
CCTTTGTCTTATCCTTTGTT+TGG 0.310847 6_3:-13685705 Msa0940850:CDS
AGTAATGAGGCAAGGTTAGA+AGG 0.313538 6_3:-13681632 Msa0940850:CDS
CAATTTCTTGAAATTGTTAG+AGG 0.323954 6_3:-13685405 Msa0940850:CDS
GAATCAACATTTGAAGAGTT+TGG 0.328520 6_3:+13685645 None:intergenic
AAATTTCAAACCATTTCTTT+TGG 0.329594 6_3:+13681550 None:intergenic
CATTAATAGACTTAAATATT+GGG 0.336747 6_3:+13686028 None:intergenic
TTTGTGTAATATGGTCCTTT+TGG 0.342622 6_3:+13685549 None:intergenic
TTGTGTTCATTGGTGTTTGC+CGG 0.346366 6_3:-13681429 Msa0940850:CDS
ATTGGTAATTCACACTCATT+TGG 0.354395 6_3:+13685441 None:intergenic
AAATATTATTTATGTATGTA+TGG 0.359893 6_3:-13681301 Msa0940850:three_prime_UTR
ACAACTTGAAGCATTGCTAA+TGG 0.368679 6_3:-13685996 Msa0940850:five_prime_UTR
CATTGATTTGTCTTCTATCA+AGG 0.377308 6_3:-13685332 Msa0940850:CDS
AATTGTTAGAGGAAAATCTA+TGG 0.387764 6_3:-13685394 Msa0940850:CDS
TGTAGGGAAATAGGAGGATA+AGG 0.390857 6_3:+13685878 None:intergenic
CAAAAGAAGGCCAAAAGAAA+TGG 0.396468 6_3:-13681560 Msa0940850:CDS
CATCAAAATTGCATGAAGTA+TGG 0.396655 6_3:-13685501 Msa0940850:CDS
CACTTCATGAACTCAGAATC+TGG 0.401439 6_3:+13685474 None:intergenic
TATTTGACGCCTCTCTCTCT+TGG 0.416138 6_3:+13681346 None:intergenic
TTTGTGTATGATACATCTAT+AGG 0.421377 6_3:+13682109 None:intergenic
TGTATAATGATTGTGTTCAT+TGG 0.428103 6_3:-13681439 Msa0940850:CDS
AAATCACTCCATGTATCTAT+AGG 0.439104 6_3:+13681404 None:intergenic
TTTGACTATGTCATACTCAA+TGG 0.443897 6_3:-13681911 Msa0940850:CDS
CTTGCTAGAAATGTTGAAGA+TGG 0.447896 6_3:-13681381 Msa0940850:CDS
TGTGTTCATTGGTGTTTGCC+GGG 0.463636 6_3:-13681428 Msa0940850:CDS
GAGAATGGTATATGGAATCA+AGG 0.466149 6_3:-13681686 Msa0940850:CDS
CCTTTCTCATAGAATACCAT+TGG 0.468622 6_3:+13681869 None:intergenic
GGAGTTATATATGATCCAAT+TGG 0.472009 6_3:-13681600 Msa0940850:CDS
GATCATATATAACTCCATAT+TGG 0.477273 6_3:+13681607 None:intergenic
ACAATTTCAAGAAATTGAAA+AGG 0.480067 6_3:+13685411 None:intergenic
AGAAAACAAGAGAAAGGTGT+AGG 0.480466 6_3:+13685861 None:intergenic
AAAGAGAGAAAACAAGAGAA+AGG 0.484374 6_3:+13685855 None:intergenic
TTACACAAACAAAACATGTT+GGG 0.484375 6_3:-13685535 Msa0940850:CDS
GCCATGGTGAAATTGTAACT+TGG 0.501109 6_3:+13682058 None:intergenic
ATACAAAATTTCCCAAAAGA+AGG 0.501845 6_3:-13681573 Msa0940850:CDS
GGCAAATGACCGTATCTACT+AGG 0.502399 6_3:+13681479 None:intergenic
ATCAAGGTGGGAATTGTTTG+AGG 0.502442 6_3:-13681670 Msa0940850:CDS
CCAATGGTATTCTATGAGAA+AGG 0.509194 6_3:-13681869 Msa0940850:CDS
CAAACAAAGGATAAGACAAA+GGG 0.511568 6_3:+13685706 None:intergenic
TGCTTTGAATTCTAATTGAG+TGG 0.513034 6_3:+13685950 None:intergenic
ATTACACAAACAAAACATGT+TGG 0.513699 6_3:-13685536 Msa0940850:CDS
ATTGATTTGTCTTCTATCAA+GGG 0.514925 6_3:-13685331 Msa0940850:intron
GAAAACAAGAGAAAGGTGTA+GGG 0.519811 6_3:+13685862 None:intergenic
GTAGGGAAATAGGAGGATAA+GGG 0.521151 6_3:+13685879 None:intergenic
CTGAGTTCATGAAGTGGAGA+TGG 0.523549 6_3:-13685467 Msa0940850:CDS
GTAATGAGGCAAGGTTAGAA+GGG 0.526044 6_3:-13681631 Msa0940850:CDS
AAGATGACTATTTCATGAGA+TGG 0.526318 6_3:-13682087 Msa0940850:CDS
AATGTATTATGGCTATAGAA+AGG 0.534002 6_3:-13681795 Msa0940850:CDS
GAATGGGTGCCAAATCCAAA+AGG 0.542062 6_3:-13685564 Msa0940850:CDS
CTCCATGTATCTATAGGCCC+CGG 0.543072 6_3:+13681410 None:intergenic
CCATGGTGAAATTGTAACTT+GGG 0.548906 6_3:+13682059 None:intergenic
ATGGTATATGGAATCAAGGT+GGG 0.552248 6_3:-13681682 Msa0940850:CDS
TATCTACTAGGATGACCATC+TGG 0.553489 6_3:+13681491 None:intergenic
AAAATTGCATGAAGTATGGT+AGG 0.554471 6_3:-13685497 Msa0940850:CDS
AAGGTTAGAAGGGACCAATA+TGG 0.554657 6_3:-13681621 Msa0940850:CDS
TAGAAATGTTGAAGATGGAG+AGG 0.557876 6_3:-13681376 Msa0940850:CDS
AAAACTGAGAACATCGCAAA+GGG 0.566726 6_3:-13686073 Msa0940850:five_prime_UTR
GTTATATATGATCCAATTGG+AGG 0.568697 6_3:-13681597 Msa0940850:CDS
AAATGTTGATTCAATCGAGA+AGG 0.571010 6_3:-13685634 Msa0940850:CDS
GATGGTCATCCTAGTAGATA+CGG 0.574936 6_3:-13681488 Msa0940850:CDS
ACTCAACAAGAAAATTCAGA+TGG 0.581680 6_3:-13682007 Msa0940850:CDS
GAAAGGTGTAGGGAAATAGG+AGG 0.584068 6_3:+13685872 None:intergenic
GGGTGTCCAATAAGCAGCCA+TGG 0.591946 6_3:+13682042 None:intergenic
TAAGCCATTTAAGAGTAATG+AGG 0.603193 6_3:-13681645 Msa0940850:CDS
GGGCTAAGTCCAAGAGAGAG+AGG 0.603246 6_3:-13681355 Msa0940850:CDS
ATACCATTCTCAAAATGAGA+TGG 0.606970 6_3:+13681698 None:intergenic
TGCCGGGGCCTATAGATACA+TGG 0.612962 6_3:-13681412 Msa0940850:CDS
CCAAACAAAGGATAAGACAA+AGG 0.615001 6_3:+13685705 None:intergenic
GCAATGTTATTGAGACCAGA+TGG 0.619557 6_3:-13681506 Msa0940850:CDS
CATTTAAGAGTAATGAGGCA+AGG 0.623526 6_3:-13681640 Msa0940850:CDS
TCATACTCAATGGAGGACAT+TGG 0.627466 6_3:-13681901 Msa0940850:CDS
TCAGATGGACCAACCCACAC+TGG 0.628911 6_3:-13681992 Msa0940850:CDS
GACTATGTCATACTCAATGG+AGG 0.630990 6_3:-13681908 Msa0940850:CDS
GTGTTCATTGGTGTTTGCCG+GGG 0.638635 6_3:-13681427 Msa0940850:CDS
TAAAACTGAGAACATCGCAA+AGG 0.643633 6_3:-13686074 Msa0940850:five_prime_UTR
TTGTAGAGACCAGTGTGGGT+TGG 0.646461 6_3:+13681983 None:intergenic
AGAAATGATGAACCAAACAA+AGG 0.648407 6_3:+13685693 None:intergenic
AGAAATGTTGAAGATGGAGA+GGG 0.651408 6_3:-13681375 Msa0940850:CDS
AATGGTATATGGAATCAAGG+TGG 0.651741 6_3:-13681683 Msa0940850:CDS
ACATTGGTTCTACAAGCCAA+TGG 0.660827 6_3:-13681885 Msa0940850:CDS
CAGATTCTGAGTTCATGAAG+TGG 0.668427 6_3:-13685473 Msa0940850:CDS
AAGATTGTAGAGACCAGTGT+GGG 0.682690 6_3:+13681979 None:intergenic
CCCAAGTTACAATTTCACCA+TGG 0.686237 6_3:-13682059 Msa0940850:CDS
AAACAAAGGATAAGACAAAG+GGG 0.730288 6_3:+13685707 None:intergenic
AAAGATTGTAGAGACCAGTG+TGG 0.741443 6_3:+13681978 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGCTAATAAAATTATTTT+TGG + chr6_3:13681528-13681547 None:intergenic 10.0%
!!! AAATTTATTTTATAGATAGA+TGG + chr6_3:13683415-13683434 None:intergenic 10.0%
!! TATAAAAGTCAATTAAAATA+AGG + chr6_3:13684592-13684611 None:intergenic 10.0%
!! AAATATTATTTATGTATGTA+TGG - chr6_3:13685980-13685999 Msa0940850:five_prime_UTR 10.0%
!! CATTAATAGACTTAAATATT+GGG + chr6_3:13681256-13681275 None:intergenic 15.0%
!!! AAAATACTTTTAATAGGTTT+TGG - chr6_3:13682411-13682430 Msa0940850:intron 15.0%
!! TAATTAAAGTAGAGTTATTT+GGG + chr6_3:13682871-13682890 None:intergenic 15.0%
!! TATTAATTAATTTCAGTTCT+TGG - chr6_3:13683760-13683779 Msa0940850:intron 15.0%
!!! AGTATTTGAGATTTTATTTT+TGG - chr6_3:13684181-13684200 Msa0940850:intron 15.0%
!!! AACAAATGATGATATTTTAA+TGG - chr6_3:13684388-13684407 Msa0940850:intron 15.0%
!!! ACAAATGATGATATTTTAAT+GGG - chr6_3:13684389-13684408 Msa0940850:intron 15.0%
!!! TTTTTTTTACTAAATGCAAA+AGG - chr6_3:13684795-13684814 Msa0940850:intron 15.0%
!! AAGGAAATAATTAAATTAGT+TGG + chr6_3:13684905-13684924 None:intergenic 15.0%
!! ACTAATTTAATTATTTCCTT+TGG - chr6_3:13684905-13684924 Msa0940850:intron 15.0%
!! CTAATTTAATTATTTCCTTT+GGG - chr6_3:13684906-13684925 Msa0940850:intron 15.0%
!!! ACAATATTAAGAGTTTTAAT+TGG + chr6_3:13685032-13685051 None:intergenic 15.0%
!!! AAAATTTTCTAAGCTATTTA+AGG + chr6_3:13685533-13685552 None:intergenic 15.0%
!!! AAATAGCTTAGAAAATTTTA+AGG - chr6_3:13685534-13685553 Msa0940850:CDS 15.0%
!!! AATAGCTTAGAAAATTTTAA+GGG - chr6_3:13685535-13685554 Msa0940850:CDS 15.0%
!! CCATTAATAGACTTAAATAT+TGG + chr6_3:13681257-13681276 None:intergenic 20.0%
!! CCAATATTTAAGTCTATTAA+TGG - chr6_3:13681254-13681273 Msa0940850:three_prime_UTR 20.0%
!!! AAAAATTGTGACATTTTTAG+TGG - chr6_3:13681693-13681712 Msa0940850:CDS 20.0%
!! AATTGAAAAGGATTGAAAAT+TGG + chr6_3:13681861-13681880 None:intergenic 20.0%
!! ACAATTTCAAGAAATTGAAA+AGG + chr6_3:13681873-13681892 None:intergenic 20.0%
!! TTAACATAGACATCAAAAAA+GGG + chr6_3:13682061-13682080 None:intergenic 20.0%
!! ATTAACATAGACATCAAAAA+AGG + chr6_3:13682062-13682081 None:intergenic 20.0%
!! TATGTTAATTATAGTTGCTT+TGG - chr6_3:13682073-13682092 Msa0940850:CDS 20.0%
!! GTAATTAAAGTAGAGTTATT+TGG + chr6_3:13682872-13682891 None:intergenic 20.0%
!! AAGAAAAAAAACTAAGAGAT+TGG - chr6_3:13682917-13682936 Msa0940850:intron 20.0%
!!! TAAGCAAAAAATCACTTTTT+AGG - chr6_3:13682994-13683013 Msa0940850:intron 20.0%
!! CATTCAATACTTAATGTATT+TGG + chr6_3:13683058-13683077 None:intergenic 20.0%
!! TATTAAGAAATATACCTAAC+AGG + chr6_3:13683450-13683469 None:intergenic 20.0%
!! AATTACTGAGATAATTTATG+TGG + chr6_3:13683623-13683642 None:intergenic 20.0%
!!! TAAGTGTATATTTTATGAGT+TGG + chr6_3:13683988-13684007 None:intergenic 20.0%
!!! ACGTTTTATTAATAGACTTT+AGG + chr6_3:13684086-13684105 None:intergenic 20.0%
!! TATGTATAGTTAGTGTAAAA+TGG - chr6_3:13684129-13684148 Msa0940850:intron 20.0%
!! AAGGAAATTATTACCATAAA+AGG + chr6_3:13684527-13684546 None:intergenic 20.0%
!!! TATGGTAATAATTTCCTTTT+TGG - chr6_3:13684529-13684548 Msa0940850:intron 20.0%
!!! ATGTGTTTTAACCATTTTAA+TGG - chr6_3:13684709-13684728 Msa0940850:intron 20.0%
!! ATATTCAAGTACCATTAAAA+TGG + chr6_3:13684723-13684742 None:intergenic 20.0%
!! AAAGTCTCAAATAATTTAGA+GGG + chr6_3:13685005-13685024 None:intergenic 20.0%
!! TAAAGTCTCAAATAATTTAG+AGG + chr6_3:13685006-13685025 None:intergenic 20.0%
!!! ATTTTTCATCAAATTCATCT+AGG + chr6_3:13685330-13685349 None:intergenic 20.0%
!! TAGATGAATTTGATGAAAAA+TGG - chr6_3:13685329-13685348 Msa0940850:intron 20.0%
!!! ACTGATTTAACAATGTATTA+TGG - chr6_3:13685475-13685494 Msa0940850:CDS 20.0%
!!! AAATTTCAAACCATTTCTTT+TGG + chr6_3:13685734-13685753 None:intergenic 20.0%
!!! AAAGAAATGGTTTGAAATTT+AGG - chr6_3:13685734-13685753 Msa0940850:CDS 20.0%
!!! ACTATTATTGCCATATTTTT+TGG - chr6_3:13686018-13686037 Msa0940850:five_prime_UTR 20.0%
!! TCTACAAAATCCAAAAAATA+TGG + chr6_3:13686031-13686050 None:intergenic 20.0%
!! TTTTCTTGGAACTTCATTTT+TGG + chr6_3:13681465-13681484 None:intergenic 25.0%
!!! CAATTTTTCAAAGATGTTGA+AGG + chr6_3:13681681-13681700 None:intergenic 25.0%
!!! CATGTTTTGTTTGTGTAATA+TGG + chr6_3:13681744-13681763 None:intergenic 25.0%
! ATTACACAAACAAAACATGT+TGG - chr6_3:13681745-13681764 Msa0940850:CDS 25.0%
! TTACACAAACAAAACATGTT+GGG - chr6_3:13681746-13681765 Msa0940850:CDS 25.0%
! CAATTTCTTGAAATTGTTAG+AGG - chr6_3:13681876-13681895 Msa0940850:CDS 25.0%
! AATTGTTAGAGGAAAATCTA+TGG - chr6_3:13681887-13681906 Msa0940850:CDS 25.0%
!!! ATTGATTTGTCTTCTATCAA+GGG - chr6_3:13681950-13681969 Msa0940850:CDS 25.0%
!!! TCATTGATTGATGGTATTTT+CGG + chr6_3:13682163-13682182 None:intergenic 25.0%
!! AATAGTGTATCATTGATTGA+TGG + chr6_3:13682172-13682191 None:intergenic 25.0%
! TAGTCATTTGTCAAAAGAAA+TGG - chr6_3:13682331-13682350 Msa0940850:intron 25.0%
!! TGTCATCTCTATTTCTTAAA+AGG + chr6_3:13682844-13682863 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr6_3:13683093-13683112 None:intergenic 25.0%
! AACATTTGTGATGTTTGATT+GGG + chr6_3:13683191-13683210 None:intergenic 25.0%
! AAACATTTGTGATGTTTGAT+TGG + chr6_3:13683192-13683211 None:intergenic 25.0%
!! TAGACTTTTACTCTAAATGT+CGG - chr6_3:13683326-13683345 Msa0940850:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr6_3:13683931-13683950 Msa0940850:intron 25.0%
! AAATCTCAAATACTGATATG+CGG + chr6_3:13684175-13684194 None:intergenic 25.0%
!!! TTAAAGCATTGTTATATGCA+GGG + chr6_3:13684279-13684298 None:intergenic 25.0%
!! ATGAAACGATAGTGTTATTA+TGG - chr6_3:13684357-13684376 Msa0940850:intron 25.0%
!! TCAAAAAGAGTTTCCTTTTA+TGG - chr6_3:13684511-13684530 Msa0940850:intron 25.0%
! TAAAATAAGGTCATGTTAAC+CGG + chr6_3:13684579-13684598 None:intergenic 25.0%
!!! TAGACCATTTAACTTTTTCT+AGG - chr6_3:13685141-13685160 Msa0940850:intron 25.0%
! TTTGTGTATGATACATCTAT+AGG + chr6_3:13685175-13685194 None:intergenic 25.0%
! TATGAGAAAGGAAAAATTGT+TGG - chr6_3:13685424-13685443 Msa0940850:CDS 25.0%
! AATGTATTATGGCTATAGAA+AGG - chr6_3:13685486-13685505 Msa0940850:CDS 25.0%
! GATCATATATAACTCCATAT+TGG + chr6_3:13685677-13685696 None:intergenic 25.0%
!! AAATTTTGTATTCCTCCAAT+TGG + chr6_3:13685699-13685718 None:intergenic 25.0%
! ATACAAAATTTCCCAAAAGA+AGG - chr6_3:13685708-13685727 Msa0940850:CDS 25.0%
! TGTATAATGATTGTGTTCAT+TGG - chr6_3:13685842-13685861 Msa0940850:five_prime_UTR 25.0%
!! TAGAGATGAATTTTGTTGAT+TGG - chr6_3:13686047-13686066 Msa0940850:five_prime_UTR 25.0%
! TGCTTTGAATTCTAATTGAG+TGG + chr6_3:13681334-13681353 None:intergenic 30.0%
! AAGGGTAATGAAAGAAGTTT+TGG + chr6_3:13681387-13681406 None:intergenic 30.0%
AAAGAGAGAAAACAAGAGAA+AGG + chr6_3:13681429-13681448 None:intergenic 30.0%
!! TTGGAACTTCATTTTTGGAA+GGG + chr6_3:13681460-13681479 None:intergenic 30.0%
AAACAAAGGATAAGACAAAG+GGG + chr6_3:13681577-13681596 None:intergenic 30.0%
CAAACAAAGGATAAGACAAA+GGG + chr6_3:13681578-13681597 None:intergenic 30.0%
AGAAATGATGAACCAAACAA+AGG + chr6_3:13681591-13681610 None:intergenic 30.0%
GAATCAACATTTGAAGAGTT+TGG + chr6_3:13681639-13681658 None:intergenic 30.0%
!! AAATGTTGATTCAATCGAGA+AGG - chr6_3:13681647-13681666 Msa0940850:CDS 30.0%
!!! TGACATTTTTAGTGGTGAAT+GGG - chr6_3:13681701-13681720 Msa0940850:CDS 30.0%
! TAATATGGTCCTTTTGGATT+TGG + chr6_3:13681729-13681748 None:intergenic 30.0%
! TTTGTGTAATATGGTCCTTT+TGG + chr6_3:13681735-13681754 None:intergenic 30.0%
CATCAAAATTGCATGAAGTA+TGG - chr6_3:13681780-13681799 Msa0940850:CDS 30.0%
AAAATTGCATGAAGTATGGT+AGG - chr6_3:13681784-13681803 Msa0940850:CDS 30.0%
! ATTGGTAATTCACACTCATT+TGG + chr6_3:13681843-13681862 None:intergenic 30.0%
!! CATTGATTTGTCTTCTATCA+AGG - chr6_3:13681949-13681968 Msa0940850:CDS 30.0%
! AAATTGAAGAAGTGTAGAAG+TGG + chr6_3:13681982-13682001 None:intergenic 30.0%
TCAATCTATAAGCTTGATCA+AGG + chr6_3:13682258-13682277 None:intergenic 30.0%
! AGTCTCAACTCATTTGAAAT+AGG + chr6_3:13682310-13682329 None:intergenic 30.0%
CATTTGTCAAAAGAAATGGA+AGG - chr6_3:13682335-13682354 Msa0940850:intron 30.0%
AGAAATGGAAGGTTTCATTT+AGG - chr6_3:13682346-13682365 Msa0940850:intron 30.0%
!! TTTAATAGGTTTTGGTCTAG+TGG - chr6_3:13682419-13682438 Msa0940850:intron 30.0%
! TTGACTTTAGAAAACCTGTT+AGG - chr6_3:13683433-13683452 Msa0940850:intron 30.0%
! CTTTTGCTTATAATAGTGAC+CGG + chr6_3:13683822-13683841 None:intergenic 30.0%
!! GTGTATATTTTATGAGTTGG+AGG + chr6_3:13683985-13684004 None:intergenic 30.0%
! ATTCAATTGACTTATCCCAT+AGG + chr6_3:13684050-13684069 None:intergenic 30.0%
! TTTTGGTCAAGTAACTTTAG+TGG - chr6_3:13684198-13684217 Msa0940850:intron 30.0%
CACATTGTAAAGTGAATAAG+TGG - chr6_3:13684229-13684248 Msa0940850:intron 30.0%
!! TAAAGCATTGTTATATGCAG+GGG + chr6_3:13684278-13684297 None:intergenic 30.0%
!! GTTAAAGCATTGTTATATGC+AGG + chr6_3:13684280-13684299 None:intergenic 30.0%
! TTTTAATGGGAAATGCTAAC+CGG - chr6_3:13684402-13684421 Msa0940850:intron 30.0%
ACTGGTTAAGGATACTAAAA+AGG - chr6_3:13684437-13684456 Msa0940850:intron 30.0%
ACTGGTTAATGATACCAAAA+AGG + chr6_3:13684546-13684565 None:intergenic 30.0%
ATCTTTGGATTGTATTCTAG+TGG + chr6_3:13684969-13684988 None:intergenic 30.0%
CAAATAATTTAGAGGGTCAT+GGG + chr6_3:13684998-13685017 None:intergenic 30.0%
TCAAATAATTTAGAGGGTCA+TGG + chr6_3:13684999-13685018 None:intergenic 30.0%
!! ACCATTTAACTTTTTCTAGG+TGG - chr6_3:13685144-13685163 Msa0940850:intron 30.0%
TCCACCTAGAAAAAGTTAAA+TGG + chr6_3:13685148-13685167 None:intergenic 30.0%
!! TTAACTTTTTCTAGGTGGAA+TGG - chr6_3:13685149-13685168 Msa0940850:intron 30.0%
AAGATGACTATTTCATGAGA+TGG - chr6_3:13685194-13685213 Msa0940850:intron 30.0%
!! TGTTGAGTTTTGACAAGAAA+GGG + chr6_3:13685262-13685281 None:intergenic 30.0%
!! TTGTTGAGTTTTGACAAGAA+AGG + chr6_3:13685263-13685282 None:intergenic 30.0%
ACTCAACAAGAAAATTCAGA+TGG - chr6_3:13685274-13685293 Msa0940850:intron 30.0%
TTTGACTATGTCATACTCAA+TGG - chr6_3:13685370-13685389 Msa0940850:CDS 30.0%
ATACCATTCTCAAAATGAGA+TGG + chr6_3:13685586-13685605 None:intergenic 30.0%
!! CTCATTTTGAGAATGGTATA+TGG - chr6_3:13685587-13685606 Msa0940850:CDS 30.0%
TAAGCCATTTAAGAGTAATG+AGG - chr6_3:13685636-13685655 Msa0940850:CDS 30.0%
GGAGTTATATATGATCCAAT+TGG - chr6_3:13685681-13685700 Msa0940850:CDS 30.0%
GTTATATATGATCCAATTGG+AGG - chr6_3:13685684-13685703 Msa0940850:CDS 30.0%
!! ATTTCTTTTGGCCTTCTTTT+GGG + chr6_3:13685722-13685741 None:intergenic 30.0%
! TACAATGTCACATTTTCTTG+TGG + chr6_3:13685826-13685845 None:intergenic 30.0%
AAATCACTCCATGTATCTAT+AGG + chr6_3:13685880-13685899 None:intergenic 30.0%
TAAAACTGAGAACATCGCAA+AGG - chr6_3:13681207-13681226 Msa0940850:three_prime_UTR 35.0%
AAAACTGAGAACATCGCAAA+GGG - chr6_3:13681208-13681227 Msa0940850:three_prime_UTR 35.0%
!! ACAACTTGAAGCATTGCTAA+TGG - chr6_3:13681285-13681304 Msa0940850:three_prime_UTR 35.0%
! GAAAACAAGAGAAAGGTGTA+GGG + chr6_3:13681422-13681441 None:intergenic 35.0%
! AGAAAACAAGAGAAAGGTGT+AGG + chr6_3:13681423-13681442 None:intergenic 35.0%
!! CTTGGAACTTCATTTTTGGA+AGG + chr6_3:13681461-13681480 None:intergenic 35.0%
! CATAGAGATGCTCTTTTTCT+TGG + chr6_3:13681479-13681498 None:intergenic 35.0%
!! CAAGAAAAAGAGCATCTCTA+TGG - chr6_3:13681477-13681496 Msa0940850:CDS 35.0%
CCAAACAAAGGATAAGACAA+AGG + chr6_3:13681579-13681598 None:intergenic 35.0%
CCTTTGTCTTATCCTTTGTT+TGG - chr6_3:13681576-13681595 Msa0940850:CDS 35.0%
!!! GTGACATTTTTAGTGGTGAA+TGG - chr6_3:13681700-13681719 Msa0940850:CDS 35.0%
! GGAAAATCTATGGCTTTTGT+TGG - chr6_3:13681897-13681916 Msa0940850:CDS 35.0%
!! TGCTTTGGTGTTAAGTGATT+TGG - chr6_3:13682088-13682107 Msa0940850:CDS 35.0%
GCTTCAATGACAATTCATAG+AGG - chr6_3:13682193-13682212 Msa0940850:intron 35.0%
TAATAAACCCCACAAAGTTG+AGG - chr6_3:13682626-13682645 Msa0940850:intron 35.0%
TATGCACACAAATTGGAGAT+TGG + chr6_3:13682814-13682833 None:intergenic 35.0%
ATCTGACTATGCACACAAAT+TGG + chr6_3:13682821-13682840 None:intergenic 35.0%
!! ACTAAGAGATTGGCTTCAAA+TGG - chr6_3:13682927-13682946 Msa0940850:intron 35.0%
TTGCTTATAAATGTGACCAG+AGG - chr6_3:13683096-13683115 Msa0940850:intron 35.0%
TGCTTATAAATGTGACCAGA+GGG - chr6_3:13683097-13683116 Msa0940850:intron 35.0%
CTCTTAAATAATACTCCCTC+TGG + chr6_3:13683115-13683134 None:intergenic 35.0%
ATTTGTGATGTTTGATTGGG+AGG + chr6_3:13683188-13683207 None:intergenic 35.0%
GACAAATAAACCTCAATCTC+AGG - chr6_3:13683242-13683261 Msa0940850:intron 35.0%
TTAAATGAGTCCTGAGATTG+AGG + chr6_3:13683255-13683274 None:intergenic 35.0%
! GAGGTACTAAAGAAATCTCT+GGG + chr6_3:13683361-13683380 None:intergenic 35.0%
! TGAGGTACTAAAGAAATCTC+TGG + chr6_3:13683362-13683381 None:intergenic 35.0%
TTTCTTTAGTACCTCAGAGA+TGG - chr6_3:13683366-13683385 Msa0940850:intron 35.0%
ACACAAGTACATTTAGCCTA+TGG - chr6_3:13684031-13684050 Msa0940850:intron 35.0%
CACAAGTACATTTAGCCTAT+GGG - chr6_3:13684032-13684051 Msa0940850:intron 35.0%
ATTGTTATATGCAGGGGTAA+AGG + chr6_3:13684272-13684291 None:intergenic 35.0%
TCAATGTCTAACCAATGACA+AGG - chr6_3:13684841-13684860 Msa0940850:intron 35.0%
CTGTTATTGTACCTTGTCAT+TGG + chr6_3:13684855-13684874 None:intergenic 35.0%
AAACAAGAAGTTAAGCCCAA+AGG + chr6_3:13684924-13684943 None:intergenic 35.0%
CCATGGTGAAATTGTAACTT+GGG + chr6_3:13685225-13685244 None:intergenic 35.0%
CCTTTCTCATAGAATACCAT+TGG + chr6_3:13685415-13685434 None:intergenic 35.0%
CCAATGGTATTCTATGAGAA+AGG - chr6_3:13685412-13685431 Msa0940850:CDS 35.0%
! ATGGCTATAGAAAGGCTTTT+AGG - chr6_3:13685494-13685513 Msa0940850:CDS 35.0%
! TTAAGGGTGTGACATTTCTT+AGG - chr6_3:13685551-13685570 Msa0940850:CDS 35.0%
GAGAATGGTATATGGAATCA+AGG - chr6_3:13685595-13685614 Msa0940850:CDS 35.0%
AATGGTATATGGAATCAAGG+TGG - chr6_3:13685598-13685617 Msa0940850:CDS 35.0%
ATGGTATATGGAATCAAGGT+GGG - chr6_3:13685599-13685618 Msa0940850:CDS 35.0%
CTTGCCTCATTACTCTTAAA+TGG + chr6_3:13685643-13685662 None:intergenic 35.0%
CATTTAAGAGTAATGAGGCA+AGG - chr6_3:13685641-13685660 Msa0940850:CDS 35.0%
!! CATTTCTTTTGGCCTTCTTT+TGG + chr6_3:13685723-13685742 None:intergenic 35.0%
CAAAAGAAGGCCAAAAGAAA+TGG - chr6_3:13685721-13685740 Msa0940850:CDS 35.0%
CTTGCTAGAAATGTTGAAGA+TGG - chr6_3:13685900-13685919 Msa0940850:five_prime_UTR 35.0%
TAGAAATGTTGAAGATGGAG+AGG - chr6_3:13685905-13685924 Msa0940850:five_prime_UTR 35.0%
AGAAATGTTGAAGATGGAGA+GGG - chr6_3:13685906-13685925 Msa0940850:five_prime_UTR 35.0%
GTAGGGAAATAGGAGGATAA+GGG + chr6_3:13681405-13681424 None:intergenic 40.0%
TGTAGGGAAATAGGAGGATA+AGG + chr6_3:13681406-13681425 None:intergenic 40.0%
! AGAGAAAGGTGTAGGGAAAT+AGG + chr6_3:13681415-13681434 None:intergenic 40.0%
!! CTTCATTTTTGGAAGGGTTG+TGG + chr6_3:13681454-13681473 None:intergenic 40.0%
CACTTCATGAACTCAGAATC+TGG + chr6_3:13681810-13681829 None:intergenic 40.0%
CAGATTCTGAGTTCATGAAG+TGG - chr6_3:13681808-13681827 Msa0940850:CDS 40.0%
! GCTTTTGTTGGAGATTCTGT+TGG - chr6_3:13681909-13681928 Msa0940850:CDS 40.0%
! GTGTTAAGTGATTTGGCATG+TGG - chr6_3:13682095-13682114 Msa0940850:CDS 40.0%
!! ATAGGTTTTGGTCTAGTGGT+TGG - chr6_3:13682423-13682442 Msa0940850:intron 40.0%
!! TTTTGGTCTAGTGGTTGGTT+TGG - chr6_3:13682428-13682447 Msa0940850:intron 40.0%
!! TTTGGTCTAGTGGTTGGTTT+GGG - chr6_3:13682429-13682448 Msa0940850:intron 40.0%
ATGGACTTGCACACTGAAAT+CGG + chr6_3:13682504-13682523 None:intergenic 40.0%
AGTTGGAGCAAAGCTCTATA+TGG + chr6_3:13682523-13682542 None:intergenic 40.0%
CTTTGCTCCAACTTTAGATG+AGG - chr6_3:13682530-13682549 Msa0940850:intron 40.0%
! GCAAAAGCCTCATCTAAAGT+TGG + chr6_3:13682540-13682559 None:intergenic 40.0%
! TTAGATGAGGCTTTTGCAAG+TGG - chr6_3:13682543-13682562 Msa0940850:intron 40.0%
! TAGATGAGGCTTTTGCAAGT+GGG - chr6_3:13682544-13682563 Msa0940850:intron 40.0%
!! ATTGGTCCCATTGGATTAGT+CGG - chr6_3:13682574-13682593 Msa0940850:intron 40.0%
ATCTGACCGACTAATCCAAT+GGG + chr6_3:13682583-13682602 None:intergenic 40.0%
TATCTGACCGACTAATCCAA+TGG + chr6_3:13682584-13682603 None:intergenic 40.0%
!! TTGGATTAGTCGGTCAGATA+CGG - chr6_3:13682584-13682603 Msa0940850:intron 40.0%
AGATTGGTGGAGTCAAGTTA+TGG + chr6_3:13682798-13682817 None:intergenic 40.0%
ATCAAATAACGTACTCCCTC+CGG - chr6_3:13682962-13682981 Msa0940850:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr6_3:13682980-13682999 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr6_3:13682981-13683000 None:intergenic 40.0%
!! GATGGACTGAAGCACATAAA+TGG + chr6_3:13683397-13683416 None:intergenic 40.0%
TGCTAAGATTCCACTTCTTG+TGG + chr6_3:13683658-13683677 None:intergenic 40.0%
TTAGCACGAGATGTAAACTC+TGG - chr6_3:13683672-13683691 Msa0940850:intron 40.0%
GTGTTCTTGTGGCATTGTTA+GGG + chr6_3:13683714-13683733 None:intergenic 40.0%
TGTGTTCTTGTGGCATTGTT+AGG + chr6_3:13683715-13683734 None:intergenic 40.0%
TTACTAGCAAATACTCCCTC+CGG - chr6_3:13683800-13683819 Msa0940850:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr6_3:13683935-13683954 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr6_3:13683934-13683953 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr6_3:13683934-13683953 Msa0940850:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr6_3:13683935-13683954 Msa0940850:intron 40.0%
! AAGTGAATAAGTGGAGTGTC+TGG - chr6_3:13684238-13684257 Msa0940850:intron 40.0%
GTGTCTCTGTGAAGATAACT+CGG + chr6_3:13684310-13684329 None:intergenic 40.0%
ATAACCAGATGATCGAGCTT+AGG - chr6_3:13684626-13684645 Msa0940850:intron 40.0%
AACAGCATGATGCTAACATG+TGG - chr6_3:13684870-13684889 Msa0940850:intron 40.0%
CCCAAGTTACAATTTCACCA+TGG - chr6_3:13685222-13685241 Msa0940850:intron 40.0%
GCCATGGTGAAATTGTAACT+TGG + chr6_3:13685226-13685245 None:intergenic 40.0%
ATTTCACCATGGCTGCTTAT+TGG - chr6_3:13685233-13685252 Msa0940850:intron 40.0%
AAGATTGTAGAGACCAGTGT+GGG + chr6_3:13685305-13685324 None:intergenic 40.0%
AAAGATTGTAGAGACCAGTG+TGG + chr6_3:13685306-13685325 None:intergenic 40.0%
GACTATGTCATACTCAATGG+AGG - chr6_3:13685373-13685392 Msa0940850:CDS 40.0%
TCATACTCAATGGAGGACAT+TGG - chr6_3:13685380-13685399 Msa0940850:CDS 40.0%
!! ACATTGGTTCTACAAGCCAA+TGG - chr6_3:13685396-13685415 Msa0940850:CDS 40.0%
!! GCACCATCTCATTTTGAGAA+TGG - chr6_3:13685580-13685599 Msa0940850:CDS 40.0%
ATCAAGGTGGGAATTGTTTG+AGG - chr6_3:13685611-13685630 Msa0940850:CDS 40.0%
AGTAATGAGGCAAGGTTAGA+AGG - chr6_3:13685649-13685668 Msa0940850:CDS 40.0%
GTAATGAGGCAAGGTTAGAA+GGG - chr6_3:13685650-13685669 Msa0940850:CDS 40.0%
AAGGTTAGAAGGGACCAATA+TGG - chr6_3:13685660-13685679 Msa0940850:CDS 40.0%
GCAATGTTATTGAGACCAGA+TGG - chr6_3:13685775-13685794 Msa0940850:CDS 40.0%
TATCTACTAGGATGACCATC+TGG + chr6_3:13685793-13685812 None:intergenic 40.0%
GATGGTCATCCTAGTAGATA+CGG - chr6_3:13685793-13685812 Msa0940850:CDS 40.0%
! TTGTGTTCATTGGTGTTTGC+CGG - chr6_3:13685852-13685871 Msa0940850:five_prime_UTR 40.0%
! GAAAGGTGTAGGGAAATAGG+AGG + chr6_3:13681412-13681431 None:intergenic 45.0%
GAATGGGTGCCAAATCCAAA+AGG - chr6_3:13681717-13681736 Msa0940850:CDS 45.0%
CTGAGTTCATGAAGTGGAGA+TGG - chr6_3:13681814-13681833 Msa0940850:CDS 45.0%
!! TAGTGGTTGGTTTGGGATCT+TGG - chr6_3:13682436-13682455 Msa0940850:intron 45.0%
!! AAGAGCACCTCAACTTTGTG+GGG + chr6_3:13682636-13682655 None:intergenic 45.0%
!! GAAGAGCACCTCAACTTTGT+GGG + chr6_3:13682637-13682656 None:intergenic 45.0%
!! TGAAGAGCACCTCAACTTTG+TGG + chr6_3:13682638-13682657 None:intergenic 45.0%
ATCCAGCCTCAACATTGAGT+AGG - chr6_3:13682689-13682708 Msa0940850:intron 45.0%
GTCAGACCTACTCAATGTTG+AGG + chr6_3:13682698-13682717 None:intergenic 45.0%
GCACACAAATTGGAGATTGG+TGG + chr6_3:13682811-13682830 None:intergenic 45.0%
! AAATGGACTTGCCATCTCTG+AGG + chr6_3:13683380-13683399 None:intergenic 45.0%
TTGTGGCATTGTTAGGGACA+TGG + chr6_3:13683708-13683727 None:intergenic 45.0%
GACTTGAGACTGTGTTCTTG+TGG + chr6_3:13683725-13683744 None:intergenic 45.0%
TGGATACACTATACTCCCTC+CGG + chr6_3:13683953-13683972 None:intergenic 45.0%
! TGAGTTGGAGGCTTCAACTT+TGG + chr6_3:13683973-13683992 None:intergenic 45.0%
ATGACCTAAGCTCGATCATC+TGG + chr6_3:13684633-13684652 None:intergenic 45.0%
GGTCATTAATGAGCTCTGCT+AGG - chr6_3:13684647-13684666 Msa0940850:intron 45.0%
GGTCATGGGTCTTTCATCTT+TGG + chr6_3:13684984-13685003 None:intergenic 45.0%
GGCAAATGACCGTATCTACT+AGG + chr6_3:13685805-13685824 None:intergenic 45.0%
! TGTGTTCATTGGTGTTTGCC+GGG - chr6_3:13685853-13685872 Msa0940850:five_prime_UTR 45.0%
TATTTGACGCCTCTCTCTCT+TGG + chr6_3:13685938-13685957 None:intergenic 45.0%
!!! ATTAAAAGTATTTTAATAAA+GGG + chr6_3:13682405-13682424 None:intergenic 5.0%
!!! TATTAAAAGTATTTTAATAA+AGG + chr6_3:13682406-13682425 None:intergenic 5.0%
!!! TTTATTAAAATACTTTTAAT+AGG - chr6_3:13682405-13682424 Msa0940850:intron 5.0%
!!! TCAATTTTTATTAAAAAAAA+TGG - chr6_3:13682768-13682787 Msa0940850:intron 5.0%
!!! AAAAAATGAATTTTATTTAA+TGG + chr6_3:13683498-13683517 None:intergenic 5.0%
! TGGTTTGGGATCTTGGAGTG+TGG - chr6_3:13682443-13682462 Msa0940850:intron 50.0%
CTTGGAGTGTGGAGCTTTCA+AGG - chr6_3:13682454-13682473 Msa0940850:intron 50.0%
TGTGGAGCTTTCAAGGTCTC+AGG - chr6_3:13682461-13682480 Msa0940850:intron 50.0%
! ATGAGGCTTTTGCAAGTGGG+AGG - chr6_3:13682547-13682566 Msa0940850:intron 50.0%
GACCTACTCAATGTTGAGGC+TGG + chr6_3:13682694-13682713 None:intergenic 50.0%
GCAAAGCATGCCACAAGAAG+TGG - chr6_3:13683645-13683664 Msa0940850:intron 50.0%
GAAATGCTAACCGGTGCTCT+CGG - chr6_3:13684411-13684430 Msa0940850:intron 50.0%
GGTATCATTAACCAGTGCCC+CGG - chr6_3:13684550-13684569 Msa0940850:intron 50.0%
GTATCATTAACCAGTGCCCC+GGG - chr6_3:13684551-13684570 Msa0940850:intron 50.0%
TTGTAGAGACCAGTGTGGGT+TGG + chr6_3:13685301-13685320 None:intergenic 50.0%
! GTGTTCATTGGTGTTTGCCG+GGG - chr6_3:13685854-13685873 Msa0940850:five_prime_UTR 50.0%
CTCCATGTATCTATAGGCCC+CGG + chr6_3:13685874-13685893 None:intergenic 50.0%
! AGGCTTTTGCAAGTGGGAGG+TGG - chr6_3:13682550-13682569 Msa0940850:intron 55.0%
! GGCTTTTGCAAGTGGGAGGT+GGG - chr6_3:13682551-13682570 Msa0940850:intron 55.0%
TTGCAAGTGGGAGGTGGGAT+TGG - chr6_3:13682556-13682575 Msa0940850:intron 55.0%
!! TGCTCTCGGAGCACTGGTTA+AGG - chr6_3:13684425-13684444 Msa0940850:intron 55.0%
AGGTCATGTTAACCGGTGCC+CGG + chr6_3:13684572-13684591 None:intergenic 55.0%
GGGTGTCCAATAAGCAGCCA+TGG + chr6_3:13685242-13685261 None:intergenic 55.0%
TCAGATGGACCAACCCACAC+TGG - chr6_3:13685289-13685308 Msa0940850:intron 55.0%
TGCCGGGGCCTATAGATACA+TGG - chr6_3:13685869-13685888 Msa0940850:five_prime_UTR 55.0%
GGGCTAAGTCCAAGAGAGAG+AGG - chr6_3:13685926-13685945 Msa0940850:five_prime_UTR 55.0%
!! GGAGGTGGGATTGGTCCCAT+TGG - chr6_3:13682565-13682584 Msa0940850:intron 60.0%
! AACCAGTGCTCCGAGAGCAC+CGG + chr6_3:13684424-13684443 None:intergenic 60.0%
GTCATGTTAACCGGTGCCCG+GGG + chr6_3:13684570-13684589 None:intergenic 60.0%
GGTCATGTTAACCGGTGCCC+GGG + chr6_3:13684571-13684590 None:intergenic 60.0%
AACCGGTGCTCTCGGAGCAC+TGG - chr6_3:13684419-13684438 Msa0940850:intron 65.0%
TTAACCAGTGCCCCGGGCAC+CGG - chr6_3:13684557-13684576 Msa0940850:intron 65.0%
TTAACCGGTGCCCGGGGCAC+TGG + chr6_3:13684564-13684583 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 13681206 13686097 13681206 ID=Msa0940850;Name=Msa0940850
chr6_3 mRNA 13681206 13686097 13681206 ID=Msa0940850-mRNA-1;Parent=Msa0940850;Name=Msa0940850-mRNA-1;_AED=0.14;_eAED=0.14;_QI=262|1|1|1|1|1|2|134|434
chr6_3 exon 13681206 13682140 13681206 ID=Msa0940850-mRNA-1:exon:4382;Parent=Msa0940850-mRNA-1
chr6_3 exon 13685332 13686097 13685332 ID=Msa0940850-mRNA-1:exon:4381;Parent=Msa0940850-mRNA-1
chr6_3 five_prime_UTR 13685836 13686097 13685836 ID=Msa0940850-mRNA-1:five_prime_utr;Parent=Msa0940850-mRNA-1
chr6_3 CDS 13685332 13685835 13685332 ID=Msa0940850-mRNA-1:cds;Parent=Msa0940850-mRNA-1
chr6_3 CDS 13681340 13682140 13681340 ID=Msa0940850-mRNA-1:cds;Parent=Msa0940850-mRNA-1
chr6_3 three_prime_UTR 13681206 13681339 13681206 ID=Msa0940850-mRNA-1:three_prime_utr;Parent=Msa0940850-mRNA-1
Gene Sequence

>Msa0940850

ATGAAGTTCCAAGAAAAAGAGCATCTCTATGGAAACAATAACAAAAAACAAATGTTACCAAAAATAATTTTATTAGCAATCTTTGTCATAATTATAGTTCTTGTCACCCCTTTGTCTTATCCTTTGTTTGGTTCATCATTTCTCTTGATGATGAGCAAGTCTAAAGAACCAAACTCTTCAAATGTTGATTCAATCGAGAAGGAAAATTTACCTTCAACATCTTTGAAAAATTGTGACATTTTTAGTGGTGAATGGGTGCCAAATCCAAAAGGACCATATTACACAAACAAAACATGTTGGGCAATTCATGAGCATCAAAATTGCATGAAGTATGGTAGGCCAGATTCTGAGTTCATGAAGTGGAGATGGAAGCCAAATGAGTGTGAATTACCAATTTTCAATCCTTTTCAATTTCTTGAAATTGTTAGAGGAAAATCTATGGCTTTTGTTGGAGATTCTGTTGGTAGAAATCACATGCAGTCATTGATTTGTCTTCTATCAAGGGTGGAATGGCCTATAGATGTATCATACACAAAAGATGACTATTTCATGAGATGGAAATACCCAAGTTACAATTTCACCATGGCTGCTTATTGGACACCCTTTCTTGTCAAAACTCAACAAGAAAATTCAGATGGACCAACCCACACTGGTCTCTACAATCTTTACCTAGATGAATTTGATGAAAAATGGACATCACAAATTGAAGATTTTGACTATGTCATACTCAATGGAGGACATTGGTTCTACAAGCCAATGGTATTCTATGAGAAAGGAAAAATTGTTGGATGTCATTATTGTCTCTTAGAAAATGTCACTGATTTAACAATGTATTATGGCTATAGAAAGGCTTTTAGGACTGCATTTAGAGCCTTAAATAGCTTAGAAAATTTTAAGGGTGTGACATTTCTTAGGACATTCGCACCATCTCATTTTGAGAATGGTATATGGAATCAAGGTGGGAATTGTTTGAGGACTAAGCCATTTAAGAGTAATGAGGCAAGGTTAGAAGGGACCAATATGGAGTTATATATGATCCAATTGGAGGAATACAAAATTTCCCAAAAGAAGGCCAAAAGAAATGGTTTGAAATTTAGGTTGCTTGATACAACACAAGCAATGTTATTGAGACCAGATGGTCATCCTAGTAGATACGGTCATTTGCCACAAGAAAATGTGACATTGTATAATGATTGTGTTCATTGGTGTTTGCCGGGGCCTATAGATACATGGAGTGATTTCTTGCTAGAAATGTTGAAGATGGAGAGGGCTAAGTCCAAGAGAGAGAGGCGTCAAATAGATTGA
Protein sequence

>Msa0940850

MKFQEKEHLYGNNNKKQMLPKIILLAIFVIIIVLVTPLSYPLFGSSFLLMMSKSKEPNSSNVDSIEKENLPSTSLKNCDIFSGEWVPNPKGPYYTNKTCWAIHEHQNCMKYGRPDSEFMKWRWKPNECELPIFNPFQFLEIVRGKSMAFVGDSVGRNHMQSLICLLSRVEWPIDVSYTKDDYFMRWKYPSYNFTMAAYWTPFLVKTQQENSDGPTHTGLYNLYLDEFDEKWTSQIEDFDYVILNGGHWFYKPMVFYEKGKIVGCHYCLLENVTDLTMYYGYRKAFRTAFRALNSLENFKGVTFLRTFAPSHFENGIWNQGGNCLRTKPFKSNEARLEGTNMELYMIQLEEYKISQKKAKRNGLKFRLLDTTQAMLLRPDGHPSRYGHLPQENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMERAKSKRERRQID*