Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982770 | XP_003601314.1 | 92.705 | 329 | 24 | 0 | 1 | 329 | 1 | 329 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982770 | sp|P57290|AKH_BUCAI | 32.440 | 336 | 191 | 6 | 2 | 329 | 465 | 772 | 4.50e-40 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982770 | B7FM35 | 92.705 | 329 | 24 | 0 | 1 | 329 | 1 | 329 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110970 | Msa0982770 | 0.805760 | 1.142614e-49 | -8.615850e-47 |
| Msa0466000 | Msa0982770 | 0.940510 | 2.064436e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982770 | MtrunA17_Chr3g0118521 | 92.705 | 329 | 24 | 0 | 1 | 329 | 1 | 329 | 0.0 | 605 |
| Msa0982770 | MtrunA17_Chr8g0377971 | 33.654 | 312 | 178 | 7 | 3 | 309 | 557 | 844 | 5.94e-40 | 150 |
| Msa0982770 | MtrunA17_Chr3g0121961 | 33.438 | 317 | 182 | 9 | 3 | 314 | 547 | 839 | 2.41e-39 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982770 | AT5G21060.1 | 68.471 | 314 | 99 | 0 | 1 | 314 | 1 | 314 | 1.94e-150 | 429 |
| Msa0982770 | AT5G21060.3 | 68.038 | 316 | 99 | 1 | 1 | 314 | 1 | 316 | 1.61e-148 | 424 |
| Msa0982770 | AT5G21060.2 | 68.038 | 316 | 99 | 1 | 1 | 314 | 1 | 316 | 1.86e-148 | 424 |
| Msa0982770 | AT1G31230.1 | 34.694 | 245 | 150 | 4 | 81 | 317 | 605 | 847 | 5.90e-36 | 139 |
| Msa0982770 | AT4G19710.2 | 32.812 | 320 | 186 | 7 | 3 | 317 | 557 | 852 | 3.25e-35 | 137 |
| Msa0982770 | AT4G19710.1 | 32.237 | 304 | 177 | 7 | 3 | 301 | 557 | 836 | 5.21e-31 | 124 |
Find 116 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTGATGATTTGTTGAATA+AGG | 0.191803 | 6_4:-22485740 | Msa0982770:CDS |
| TGCTGATATCGTGGATATTC+AGG | 0.217796 | 6_4:-22481498 | Msa0982770:CDS |
| GGAATCGGAAGGAAAGATTT+TGG | 0.238686 | 6_4:-22485519 | Msa0982770:CDS |
| TACATCAGGCCCCATTTCTT+TGG | 0.243020 | 6_4:+22482191 | None:intergenic |
| TTTGAAACAGGCTTTGATTC+TGG | 0.253238 | 6_4:-22482377 | Msa0982770:intron |
| TATGAGGCATTTCAAGGATA+TGG | 0.260438 | 6_4:-22480928 | Msa0982770:three_prime_UTR |
| ACTTGGTTGTCGGATTAATA+TGG | 0.269492 | 6_4:-22482347 | Msa0982770:CDS |
| CAGACGAGATTATGCGATTC+AGG | 0.269791 | 6_4:+22483138 | None:intergenic |
| GTGAATTTAAAGAAAATAAA+AGG | 0.273889 | 6_4:-22481443 | Msa0982770:intron |
| ATTTAAACAAGTGGTGGATT+TGG | 0.276380 | 6_4:-22485291 | Msa0982770:CDS |
| GACTATTCCTCTGATTCTAA+TGG | 0.288487 | 6_4:-22486303 | Msa0982770:CDS |
| GATTAATATGGATAGCATTC+AGG | 0.313276 | 6_4:-22482335 | Msa0982770:intron |
| TTTGGGTTGTTGTGTTGTTA+TGG | 0.319434 | 6_4:-22485273 | Msa0982770:CDS |
| GTTGATGATTTGTTGAATAA+GGG | 0.320022 | 6_4:-22485739 | Msa0982770:CDS |
| GATCCAGTTAATCGCATTAT+TGG | 0.322404 | 6_4:-22483113 | Msa0982770:CDS |
| TTTAAACAAGTGGTGGATTT+GGG | 0.330723 | 6_4:-22485290 | Msa0982770:CDS |
| CTTCCAATAATGCGATTAAC+TGG | 0.332630 | 6_4:+22483110 | None:intergenic |
| TTATCAAAACTTGGTGATCT+TGG | 0.334643 | 6_4:-22485661 | Msa0982770:intron |
| AAAATCTTTCCTTCCGATTC+CGG | 0.338690 | 6_4:+22485521 | None:intergenic |
| GTGAAATATTAAATTAAAGT+TGG | 0.355896 | 6_4:+22486362 | None:intergenic |
| ATGTATGGTTTATGACTTGT+AGG | 0.367114 | 6_4:-22480995 | Msa0982770:three_prime_UTR |
| TTGATTCTGGCTCGAATACT+TGG | 0.368413 | 6_4:-22482364 | Msa0982770:CDS |
| ACATCAGGCCCCATTTCTTT+GGG | 0.369952 | 6_4:+22482192 | None:intergenic |
| CTTACCATTGTAGATGTAAG+AGG | 0.378420 | 6_4:+22485239 | None:intergenic |
| TGTTAGAGCTGCTAAAAGTC+TGG | 0.379369 | 6_4:-22482877 | Msa0982770:CDS |
| TTCAGGATTTATTTCCTTGA+GGG | 0.390450 | 6_4:-22481481 | Msa0982770:CDS |
| CGATTCAGGGATGATATAAC+AGG | 0.397208 | 6_4:+22483152 | None:intergenic |
| TTGTGGAAATGTTAGTAGTA+AGG | 0.397603 | 6_4:+22486433 | None:intergenic |
| ACTATTCCTCTGATTCTAAT+GGG | 0.400587 | 6_4:-22486302 | Msa0982770:CDS |
| AAGCTTGTATCCCAAAGAAA+TGG | 0.403295 | 6_4:-22482202 | Msa0982770:CDS |
| ATATCCTTGAAATGCCTCAT+AGG | 0.405566 | 6_4:+22480930 | None:intergenic |
| ATACTCTTACTAGGGACATT+GGG | 0.405845 | 6_4:-22482945 | Msa0982770:intron |
| AAGTCAAAATCTCAAGTTGA+TGG | 0.407578 | 6_4:-22481208 | Msa0982770:three_prime_UTR |
| GCTTACCTGCAGACTTCATA+TGG | 0.408122 | 6_4:-22481177 | Msa0982770:three_prime_UTR |
| GGACTCTGCTTGAGAGTTGT+GGG | 0.411485 | 6_4:-22485790 | Msa0982770:CDS |
| AGCTTGTATCCCAAAGAAAT+GGG | 0.417096 | 6_4:-22482201 | Msa0982770:CDS |
| AACCAACCGCTTGTTATTCA+AGG | 0.432651 | 6_4:-22481560 | Msa0982770:CDS |
| CCGCTTGTTATTCAAGGTGC+TGG | 0.439103 | 6_4:-22481554 | Msa0982770:CDS |
| AGGGGAAAAGAGTGCTTCTC+AGG | 0.444167 | 6_4:+22481136 | None:intergenic |
| CCTCTGATTCTAATGGGTTG+TGG | 0.444812 | 6_4:-22486296 | Msa0982770:CDS |
| GGGACTCTGCTTGAGAGTTG+TGG | 0.445062 | 6_4:-22485791 | Msa0982770:CDS |
| TTAATATTTCACAAAAGAAA+AGG | 0.448339 | 6_4:-22486351 | Msa0982770:five_prime_UTR |
| TGCTTGAGAGTTGTGGGAGT+TGG | 0.449369 | 6_4:-22485784 | Msa0982770:CDS |
| AGTATTTGTGCATCCGGAAT+CGG | 0.454900 | 6_4:-22485534 | Msa0982770:CDS |
| TTTGACTTGAAATGTATTCA+GGG | 0.458092 | 6_4:+22481223 | None:intergenic |
| ATGTCAAGTATTTGTGCATC+CGG | 0.460749 | 6_4:-22485540 | Msa0982770:CDS |
| CTAATGGGTTGTGGAGGAGT+TGG | 0.462718 | 6_4:-22486287 | Msa0982770:CDS |
| TGGCTCGAATACTTGGTTGT+CGG | 0.465975 | 6_4:-22482357 | Msa0982770:CDS |
| GATTCCTATGAGGCATTTCA+AGG | 0.467207 | 6_4:-22480934 | Msa0982770:three_prime_UTR |
| GGCGACTCTTTATCAAAACT+TGG | 0.468528 | 6_4:-22485670 | Msa0982770:CDS |
| TGGAATGGATGTTGCTAGAA+AGG | 0.469655 | 6_4:-22482695 | Msa0982770:intron |
| CTGAATCGCATAATCTCGTC+TGG | 0.472188 | 6_4:-22483137 | Msa0982770:CDS |
| GTTATTCAAGGTGCTGGAGC+TGG | 0.472892 | 6_4:-22481548 | Msa0982770:CDS |
| TGTGGAAATGTTAGTAGTAA+GGG | 0.490580 | 6_4:+22486434 | None:intergenic |
| CGCATTATTGGAAGTTTGAG+TGG | 0.502100 | 6_4:-22483101 | Msa0982770:intron |
| CGATATGTCTGTGTCATTGA+GGG | 0.505166 | 6_4:-22482072 | Msa0982770:CDS |
| GTTAGAGCTGCTAAAAGTCT+GGG | 0.506073 | 6_4:-22482876 | Msa0982770:CDS |
| TCATCAACAGTCATTACATC+AGG | 0.509894 | 6_4:+22482177 | None:intergenic |
| GTGAGGATAGAGAAAATGTA+TGG | 0.519715 | 6_4:-22481010 | Msa0982770:three_prime_UTR |
| GTTGAGAAGGCAGCTTCAAA+CGG | 0.522134 | 6_4:-22482105 | Msa0982770:CDS |
| TCGTTCTCTTCACTCTTCAC+AGG | 0.522889 | 6_4:-22486234 | Msa0982770:intron |
| TCCATCCATATGAAGTCTGC+AGG | 0.525603 | 6_4:+22481172 | None:intergenic |
| TGCTAGCTCTGACACTATAG+TGG | 0.526126 | 6_4:-22485315 | Msa0982770:CDS |
| AACGACATGAGACGATGTGT+TGG | 0.528650 | 6_4:+22486252 | None:intergenic |
| TTGTGCTTATATGTGTAAGC+TGG | 0.529301 | 6_4:-22486494 | Msa0982770:five_prime_UTR |
| CACTTACAGTTGACTCGTGT+CGG | 0.530019 | 6_4:+22484509 | None:intergenic |
| GGAAATGACACGACTGCAGC+TGG | 0.530672 | 6_4:-22481527 | Msa0982770:CDS |
| CATACTCTTACTAGGGACAT+TGG | 0.534273 | 6_4:-22482946 | Msa0982770:intron |
| AGACGAGATTATGCGATTCA+GGG | 0.536705 | 6_4:+22483139 | None:intergenic |
| TTGGAGATCGCATCTCAACT+TGG | 0.536979 | 6_4:-22485500 | Msa0982770:CDS |
| GCAGATCCGCGTGACGACCT+TGG | 0.541256 | 6_4:-22482718 | Msa0982770:intron |
| AGTTGGTGATAGTAAATCTC+TGG | 0.543805 | 6_4:-22485767 | Msa0982770:CDS |
| GCGATATGTCTGTGTCATTG+AGG | 0.544430 | 6_4:-22482073 | Msa0982770:CDS |
| TTGATGATTTGTTGAATAAG+GGG | 0.549072 | 6_4:-22485738 | Msa0982770:CDS |
| ATAATGGAGGAAGCAGTTTG+TGG | 0.552391 | 6_4:+22486416 | None:intergenic |
| CACCTTGAATAACAAGCGGT+TGG | 0.553741 | 6_4:+22481558 | None:intergenic |
| TATTCAAGAGAGAGTTGAGA+AGG | 0.555589 | 6_4:-22482118 | Msa0982770:CDS |
| ACCTGCAGACTTCATATGGA+TGG | 0.556592 | 6_4:-22481173 | Msa0982770:three_prime_UTR |
| GCGTGACGACCTTGGTGGAA+TGG | 0.557142 | 6_4:-22482710 | Msa0982770:CDS |
| ATTCAGGATTTATTTCCTTG+AGG | 0.563190 | 6_4:-22481482 | Msa0982770:CDS |
| AGTGGTATTTAAACAAGTGG+TGG | 0.565038 | 6_4:-22485297 | Msa0982770:CDS |
| TTTATGAAATGGAATAATGG+AGG | 0.565368 | 6_4:+22486403 | None:intergenic |
| AGACATTAGAATGTGCTTGA+GGG | 0.566448 | 6_4:+22481117 | None:intergenic |
| TTCAGAACATATATCAATGT+AGG | 0.575977 | 6_4:-22481032 | Msa0982770:three_prime_UTR |
| GAACTTTGTCGGCTCAAGCA+TGG | 0.577642 | 6_4:-22485694 | Msa0982770:CDS |
| CTGATTCTAATGGGTTGTGG+AGG | 0.585102 | 6_4:-22486293 | Msa0982770:CDS |
| AACATATATCAATGTAGGTG+AGG | 0.586653 | 6_4:-22481027 | Msa0982770:three_prime_UTR |
| GATCCGCGTGACGACCTTGG+TGG | 0.590453 | 6_4:-22482715 | Msa0982770:CDS |
| CAGACATTAGAATGTGCTTG+AGG | 0.595856 | 6_4:+22481116 | None:intergenic |
| AGCTACTGCAGATTCCTATG+AGG | 0.599853 | 6_4:-22480944 | Msa0982770:three_prime_UTR |
| CCACAACCCATTAGAATCAG+AGG | 0.599933 | 6_4:+22486296 | None:intergenic |
| GACATTAGAATGTGCTTGAG+GGG | 0.601029 | 6_4:+22481118 | None:intergenic |
| TATAGTGGTATTTAAACAAG+TGG | 0.603886 | 6_4:-22485300 | Msa0982770:CDS |
| TCTGTGTCATTGAGGGCCCA+AGG | 0.607852 | 6_4:-22482065 | Msa0982770:intron |
| AGTCTGGGGTACACTGAACC+AGG | 0.614299 | 6_4:-22482861 | Msa0982770:intron |
| AGCTTACACATATAAGCACA+AGG | 0.624158 | 6_4:+22486496 | None:intergenic |
| GCTCTAACAACTTGGCTCAG+TGG | 0.629836 | 6_4:+22482891 | None:intergenic |
| TACTCTTACTAGGGACATTG+GGG | 0.630998 | 6_4:-22482944 | Msa0982770:intron |
| GCTAGCAGTGCAATCGACAA+AGG | 0.639455 | 6_4:+22485331 | None:intergenic |
| AAAGCCTCTTACATCTACAA+TGG | 0.649979 | 6_4:-22485243 | Msa0982770:intron |
| GTAATGAGTGAGGTTGAAGA+CGG | 0.653533 | 6_4:-22482918 | Msa0982770:CDS |
| TGGTGATAGTAAATCTCTGG+TGG | 0.664687 | 6_4:-22485764 | Msa0982770:CDS |
| TGGTGTCCTTGCTGATATCG+TGG | 0.665644 | 6_4:-22481507 | Msa0982770:CDS |
| GACAGTTGGAAGTATACACT+CGG | 0.666254 | 6_4:-22481592 | Msa0982770:intron |
| CCAGCACCTTGAATAACAAG+CGG | 0.667197 | 6_4:+22481554 | None:intergenic |
| ATGAGACGATGTGTTGGAGA+AGG | 0.674742 | 6_4:+22486258 | None:intergenic |
| CTTTGTCGGCTCAAGCATGG+TGG | 0.682934 | 6_4:-22485691 | Msa0982770:CDS |
| TTAGAGCTGCTAAAAGTCTG+GGG | 0.687412 | 6_4:-22482875 | Msa0982770:CDS |
| GAATATCCACGATATCAGCA+AGG | 0.690515 | 6_4:+22481501 | None:intergenic |
| GCTTGTATCCCAAAGAAATG+GGG | 0.691217 | 6_4:-22482200 | Msa0982770:CDS |
| TTTGTGCATCCGGAATCGGA+AGG | 0.691255 | 6_4:-22485530 | Msa0982770:CDS |
| GACTCGTGTCGGATACGACG+TGG | 0.702791 | 6_4:+22484520 | None:intergenic |
| ATTCCACCAAGGTCGTCACG+CGG | 0.703419 | 6_4:+22482712 | None:intergenic |
| ATTGGGGTACGTAATGAGTG+AGG | 0.705523 | 6_4:-22482928 | Msa0982770:CDS |
| TAGCAACATCCATTCCACCA+AGG | 0.709532 | 6_4:+22482701 | None:intergenic |
| GCTTACACATATAAGCACAA+GGG | 0.722316 | 6_4:+22486497 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATGAAACTTTATTTTA+GGG | + | chr6_4:22482810-22482829 | None:intergenic | 10.0% |
| !!! | TTATAATGAAACTTTATTTT+AGG | + | chr6_4:22482811-22482830 | None:intergenic | 10.0% |
| !!! | AAAATTTACTTTTAAATTTG+TGG | - | chr6_4:22484717-22484736 | Msa0982770:intron | 10.0% |
| !!! | TTTTTGTTAAAATTTTGATT+TGG | - | chr6_4:22486112-22486131 | Msa0982770:intron | 10.0% |
| !!! | ATTTTATGGATTTTATGAAA+TGG | + | chr6_4:22481093-22481112 | None:intergenic | 15.0% |
| !! | GTGAAATATTAAATTAAAGT+TGG | + | chr6_4:22481123-22481142 | None:intergenic | 15.0% |
| !! | TTAATATTTCACAAAAGAAA+AGG | - | chr6_4:22481131-22481150 | Msa0982770:three_prime_UTR | 15.0% |
| !!! | TTTTGTTAGTTTTTTCATTA+TGG | - | chr6_4:22481527-22481546 | Msa0982770:CDS | 15.0% |
| !!! | TTGAATTTTGATTGTTATTT+TGG | - | chr6_4:22481662-22481681 | Msa0982770:intron | 15.0% |
| !! | TTTCATAATAATTGTTGAAA+TGG | - | chr6_4:22482279-22482298 | Msa0982770:intron | 15.0% |
| !! | TTCATAATAATTGTTGAAAT+GGG | - | chr6_4:22482280-22482299 | Msa0982770:intron | 15.0% |
| !! | TGATTAAAGATTTATTAACA+AGG | - | chr6_4:22483017-22483036 | Msa0982770:intron | 15.0% |
| !!! | AGTAAGAATTTTCAATAAAA+AGG | - | chr6_4:22483091-22483110 | Msa0982770:intron | 15.0% |
| !! | TAAAATCAAAATCAGAAAAA+AGG | - | chr6_4:22483464-22483483 | Msa0982770:intron | 15.0% |
| !! | AAAATCAAAATCAGAAAAAA+GGG | - | chr6_4:22483465-22483484 | Msa0982770:intron | 15.0% |
| !! | TTAAAATAGAACTCATATAT+TGG | + | chr6_4:22483493-22483512 | None:intergenic | 15.0% |
| !!! | TATTATTTTTTTAACAGAAG+TGG | + | chr6_4:22483959-22483978 | None:intergenic | 15.0% |
| !!! | ACAAAATTTATTACTTTTCT+TGG | - | chr6_4:22484137-22484156 | Msa0982770:intron | 15.0% |
| !!! | ATGTATAAATAACTTTAAAG+CGG | - | chr6_4:22484167-22484186 | Msa0982770:intron | 15.0% |
| !! | TTATCAATTGTAGTTTAAAA+TGG | - | chr6_4:22485041-22485060 | Msa0982770:intron | 15.0% |
| !! | GAAAAAATACGATAAATAAA+GGG | + | chr6_4:22485215-22485234 | None:intergenic | 15.0% |
| !! | GAAGTTATAATTGATATAAA+AGG | + | chr6_4:22485599-22485618 | None:intergenic | 15.0% |
| !!! | TTATTTTATTTTCTCGTTTT+TGG | - | chr6_4:22485709-22485728 | Msa0982770:CDS | 15.0% |
| !! | GTGAATTTAAAGAAAATAAA+AGG | - | chr6_4:22486039-22486058 | Msa0982770:intron | 15.0% |
| !!! | ATTATTATTTTTAAGTTGGT+TGG | - | chr6_4:22486419-22486438 | Msa0982770:five_prime_UTR | 15.0% |
| !!! | GATTTTATGAAATGGAATAA+TGG | + | chr6_4:22481085-22481104 | None:intergenic | 20.0% |
| !!! | AAGTTGGAAATTGAATTTTA+TGG | + | chr6_4:22481107-22481126 | None:intergenic | 20.0% |
| !!! | ATTTTGATTGTTATTTTGGT+TGG | - | chr6_4:22481666-22481685 | Msa0982770:intron | 20.0% |
| !! | ACTATTTGATTGTAATTGAA+AGG | - | chr6_4:22481916-22481935 | Msa0982770:intron | 20.0% |
| !!! | ATATCTGAAATTTTCATTGT+AGG | - | chr6_4:22482123-22482142 | Msa0982770:CDS | 20.0% |
| !! | TCCTTAAACTTTATAATGTA+TGG | - | chr6_4:22482476-22482495 | Msa0982770:intron | 20.0% |
| !! | TCCATACATTATAAAGTTTA+AGG | + | chr6_4:22482480-22482499 | None:intergenic | 20.0% |
| !! | TATATCAACAGAAAATGAAA+TGG | + | chr6_4:22482514-22482533 | None:intergenic | 20.0% |
| !!! | ATATCATGTTTTTTAAGCTT+CGG | - | chr6_4:22482555-22482574 | Msa0982770:intron | 20.0% |
| !! | ATTCTATCAAGTAAAAGATA+AGG | - | chr6_4:22482833-22482852 | Msa0982770:intron | 20.0% |
| !! | ATAAATCTTTAATCATGTTG+AGG | + | chr6_4:22483012-22483031 | None:intergenic | 20.0% |
| !! | TCTATGCAATAAAAACATAA+GGG | + | chr6_4:22484040-22484059 | None:intergenic | 20.0% |
| !! | TAAATAGTTACTGGTATTAT+TGG | - | chr6_4:22484082-22484101 | Msa0982770:intron | 20.0% |
| !! | TTTCCTATCAAAATCTAATT+TGG | - | chr6_4:22484222-22484241 | Msa0982770:intron | 20.0% |
| !!! | TTTGAAATTGCATTATTCAA+TGG | - | chr6_4:22484659-22484678 | Msa0982770:intron | 20.0% |
| !! | TTGAAATTGCATTATTCAAT+GGG | - | chr6_4:22484660-22484679 | Msa0982770:intron | 20.0% |
| !!! | AATACAAACTTTCTGTTTTT+TGG | - | chr6_4:22485075-22485094 | Msa0982770:intron | 20.0% |
| !!! | ATACAAACTTTCTGTTTTTT+GGG | - | chr6_4:22485076-22485095 | Msa0982770:intron | 20.0% |
| !! | GGAAAAAATACGATAAATAA+AGG | + | chr6_4:22485216-22485235 | None:intergenic | 20.0% |
| !! | AAAATGACTAACATAACATA+GGG | + | chr6_4:22485237-22485256 | None:intergenic | 20.0% |
| !! | TAAAATGACTAACATAACAT+AGG | + | chr6_4:22485238-22485257 | None:intergenic | 20.0% |
| !!! | GTTATGTTAGTCATTTTATA+TGG | - | chr6_4:22485240-22485259 | Msa0982770:intron | 20.0% |
| !! | AAATCAACATTGAAATTGAT+AGG | + | chr6_4:22486146-22486165 | None:intergenic | 20.0% |
| !! | TTATAATATAATTGCGTTGA+TGG | - | chr6_4:22486197-22486216 | Msa0982770:intron | 20.0% |
| ! | TTTATGAAATGGAATAATGG+AGG | + | chr6_4:22481082-22481101 | None:intergenic | 25.0% |
| ! | TTTGATACTAGAAGACAAAT+GGG | + | chr6_4:22481366-22481385 | None:intergenic | 25.0% |
| !! | TTTTGATACTAGAAGACAAA+TGG | + | chr6_4:22481367-22481386 | None:intergenic | 25.0% |
| ! | TTTGATACTAAAACGCAAAT+GGG | + | chr6_4:22481437-22481456 | None:intergenic | 25.0% |
| !! | TTTTGATACTAAAACGCAAA+TGG | + | chr6_4:22481438-22481457 | None:intergenic | 25.0% |
| !! | TCAATAGCTAGATGATTTTA+AGG | + | chr6_4:22481579-22481598 | None:intergenic | 25.0% |
| !! | TAATCATTTTCTGACATTGA+TGG | - | chr6_4:22481612-22481631 | Msa0982770:intron | 25.0% |
| !!! | TTCAAAAGCACTCAATTTTA+TGG | + | chr6_4:22481647-22481666 | None:intergenic | 25.0% |
| !!! | GTTGATGATTTGTTGAATAA+GGG | - | chr6_4:22481743-22481762 | Msa0982770:intron | 25.0% |
| !!! | TTGATGATTTGTTGAATAAG+GGG | - | chr6_4:22481744-22481763 | Msa0982770:intron | 25.0% |
| !!! | GTTTTTTGTTAGAACTTTGT+CGG | - | chr6_4:22481777-22481796 | Msa0982770:intron | 25.0% |
| !! | TGAAATTTTCATTGTAGGTT+TGG | - | chr6_4:22482128-22482147 | Msa0982770:CDS | 25.0% |
| ! | TATAGTGGTATTTAAACAAG+TGG | - | chr6_4:22482182-22482201 | Msa0982770:CDS | 25.0% |
| ! | ATAATAATTGTTGAAATGGG+AGG | - | chr6_4:22482283-22482302 | Msa0982770:intron | 25.0% |
| ! | TCAAGAGGATAATGTTAAAT+AGG | + | chr6_4:22482355-22482374 | None:intergenic | 25.0% |
| ! | AAACATGACCATAAATTAGA+GGG | + | chr6_4:22482431-22482450 | None:intergenic | 25.0% |
| ! | TAAACATGACCATAAATTAG+AGG | + | chr6_4:22482432-22482451 | None:intergenic | 25.0% |
| ! | ATTTATGGTCATGTTTAGTT+TGG | - | chr6_4:22482435-22482454 | Msa0982770:intron | 25.0% |
| !! | ATAAACTGCAAATTTGTTTC+TGG | - | chr6_4:22483117-22483136 | Msa0982770:CDS | 25.0% |
| ! | TCTGTATTTAACTGTAATCT+CGG | - | chr6_4:22483162-22483181 | Msa0982770:CDS | 25.0% |
| ! | AATTCTTCCATTAAAGAACT+TGG | - | chr6_4:22483339-22483358 | Msa0982770:intron | 25.0% |
| ! | CATAATACCAAGTTCTTTAA+TGG | + | chr6_4:22483349-22483368 | None:intergenic | 25.0% |
| !! | GAAGGAAATTTTTGAATTTG+AGG | - | chr6_4:22483390-22483409 | Msa0982770:intron | 25.0% |
| ! | CTGATGCATATATACAAATA+TGG | - | chr6_4:22483436-22483455 | Msa0982770:intron | 25.0% |
| ! | AAAATCTAAATGCATGTTCT+CGG | - | chr6_4:22483622-22483641 | Msa0982770:intron | 25.0% |
| ! | CATTATATCTGTTTACTTTC+TGG | - | chr6_4:22483705-22483724 | Msa0982770:intron | 25.0% |
| ! | CTCTATGCAATAAAAACATA+AGG | + | chr6_4:22484041-22484060 | None:intergenic | 25.0% |
| !!! | TATGTTTTTATTGCATAGAG+AGG | - | chr6_4:22484041-22484060 | Msa0982770:intron | 25.0% |
| ! | ATGAGATGATAAATAGTTAC+TGG | - | chr6_4:22484073-22484092 | Msa0982770:intron | 25.0% |
| !!! | AAGCCAAATTAGATTTTGAT+AGG | + | chr6_4:22484228-22484247 | None:intergenic | 25.0% |
| !! | AAAATCTAATTTGGCTTCAT+GGG | - | chr6_4:22484231-22484250 | Msa0982770:intron | 25.0% |
| !! | TTGAAAAATCATGGATTTTG+AGG | - | chr6_4:22484258-22484277 | Msa0982770:intron | 25.0% |
| !!! | TCTGGTTGTGATATTTTTAA+AGG | - | chr6_4:22484293-22484312 | Msa0982770:intron | 25.0% |
| !!! | GTTGTGATATTTTTAAAGGT+AGG | - | chr6_4:22484297-22484316 | Msa0982770:intron | 25.0% |
| !! | AGGTATTGTTATGTTGATAT+TGG | - | chr6_4:22484502-22484521 | Msa0982770:intron | 25.0% |
| ! | AAATACGATAAATAAAGGGA+AGG | + | chr6_4:22485211-22485230 | None:intergenic | 25.0% |
| ! | AATTGAACACAGAATATGAA+GGG | + | chr6_4:22485457-22485476 | None:intergenic | 25.0% |
| ! | GATTGAATTGAACATGAAAA+AGG | + | chr6_4:22485520-22485539 | None:intergenic | 25.0% |
| ! | TTCAATCTTTGCATATGATT+TGG | - | chr6_4:22485533-22485552 | Msa0982770:CDS | 25.0% |
| !!! | GGCGTTAAGTATTTTTAATT+AGG | - | chr6_4:22485730-22485749 | Msa0982770:CDS | 25.0% |
| ! | ATTTGCATCAACATACAAAA+TGG | + | chr6_4:22485870-22485889 | None:intergenic | 25.0% |
| !!! | TTTGACTTGAAATGTATTCA+GGG | + | chr6_4:22486262-22486281 | None:intergenic | 25.0% |
| !!! | TTTTGACTTGAAATGTATTC+AGG | + | chr6_4:22486263-22486282 | None:intergenic | 25.0% |
| ! | TTCAGAACATATATCAATGT+AGG | - | chr6_4:22486450-22486469 | Msa0982770:five_prime_UTR | 25.0% |
| TGTGGAAATGTTAGTAGTAA+GGG | + | chr6_4:22481051-22481070 | None:intergenic | 30.0% | |
| TTGTGGAAATGTTAGTAGTA+AGG | + | chr6_4:22481052-22481071 | None:intergenic | 30.0% | |
| ACTATTCCTCTGATTCTAAT+GGG | - | chr6_4:22481180-22481199 | Msa0982770:three_prime_UTR | 30.0% | |
| AAAAGATCTGCTAGTCAAAT+GGG | + | chr6_4:22481508-22481527 | None:intergenic | 30.0% | |
| AAAAAGATCTGCTAGTCAAA+TGG | + | chr6_4:22481509-22481528 | None:intergenic | 30.0% | |
| !! | CGTTGATGATTTGTTGAATA+AGG | - | chr6_4:22481742-22481761 | Msa0982770:intron | 30.0% |
| ! | TTATCAAAACTTGGTGATCT+TGG | - | chr6_4:22481821-22481840 | Msa0982770:intron | 30.0% |
| !! | ACACAGTTTTGCTCTTATTT+AGG | + | chr6_4:22482080-22482099 | None:intergenic | 30.0% |
| GTGTGTATGAAAAATTGCTT+AGG | - | chr6_4:22482096-22482115 | Msa0982770:CDS | 30.0% | |
| !! | ATTTAAACAAGTGGTGGATT+TGG | - | chr6_4:22482191-22482210 | Msa0982770:CDS | 30.0% |
| !! | TTTAAACAAGTGGTGGATTT+GGG | - | chr6_4:22482192-22482211 | Msa0982770:CDS | 30.0% |
| AATTTACCCCCTCTAATTTA+TGG | - | chr6_4:22482420-22482439 | Msa0982770:intron | 30.0% | |
| AACATGACCATAAATTAGAG+GGG | + | chr6_4:22482430-22482449 | None:intergenic | 30.0% | |
| ! | TTTTCAGCGAATTTCAAGAT+TGG | + | chr6_4:22482622-22482641 | None:intergenic | 30.0% |
| TGTGCATGTCAAAAAGTTTA+TGG | - | chr6_4:22482713-22482732 | Msa0982770:CDS | 30.0% | |
| ACAATAGAACAAAGTAACGT+GGG | + | chr6_4:22482870-22482889 | None:intergenic | 30.0% | |
| AACAATAGAACAAAGTAACG+TGG | + | chr6_4:22482871-22482890 | None:intergenic | 30.0% | |
| AACAATAACTCTCTCTTACA+TGG | - | chr6_4:22482907-22482926 | Msa0982770:CDS | 30.0% | |
| GACTGTATTAAAAGAAAGTG+TGG | - | chr6_4:22483056-22483075 | Msa0982770:intron | 30.0% | |
| !! | GTTTCTGGAATTTCTTTGAT+TGG | - | chr6_4:22483132-22483151 | Msa0982770:CDS | 30.0% |
| GTGTTGTATGGATCTATAAT+CGG | - | chr6_4:22483219-22483238 | Msa0982770:intron | 30.0% | |
| ATTTCATTCCTTGTCTACTA+AGG | + | chr6_4:22483268-22483287 | None:intergenic | 30.0% | |
| TAGACAAGGAATGAAATCTA+GGG | - | chr6_4:22483271-22483290 | Msa0982770:intron | 30.0% | |
| GTCATCTTCATCTAGAAATA+AGG | - | chr6_4:22483368-22483387 | Msa0982770:intron | 30.0% | |
| TCTTCATCTAGAAATAAGGA+AGG | - | chr6_4:22483372-22483391 | Msa0982770:intron | 30.0% | |
| GTTTAAATCAACTCTTTCCT+CGG | - | chr6_4:22483752-22483771 | Msa0982770:intron | 30.0% | |
| AGTGAAATCTAATACTTCCT+CGG | - | chr6_4:22483894-22483913 | Msa0982770:intron | 30.0% | |
| ! | CAAAATCTAATTTGGCTTCA+TGG | - | chr6_4:22484230-22484249 | Msa0982770:intron | 30.0% |
| ! | AAATCTAATTTGGCTTCATG+GGG | - | chr6_4:22484232-22484251 | Msa0982770:intron | 30.0% |
| ATGGGGATATTGAAAAATCA+TGG | - | chr6_4:22484249-22484268 | Msa0982770:intron | 30.0% | |
| !! | ATATTTTTAAAGGTAGGTGC+TGG | - | chr6_4:22484303-22484322 | Msa0982770:intron | 30.0% |
| !! | TATTTTTAAAGGTAGGTGCT+GGG | - | chr6_4:22484304-22484323 | Msa0982770:intron | 30.0% |
| CTTGATCACATATTCATTGT+TGG | - | chr6_4:22484459-22484478 | Msa0982770:intron | 30.0% | |
| TTATTCTGCATACTCTTACT+AGG | - | chr6_4:22484528-22484547 | Msa0982770:CDS | 30.0% | |
| TATTCTGCATACTCTTACTA+GGG | - | chr6_4:22484529-22484548 | Msa0982770:CDS | 30.0% | |
| ATTGTGTAGCAATTAGCAAA+TGG | + | chr6_4:22484688-22484707 | None:intergenic | 30.0% | |
| !! | AACGCATAAATTTGCTAACA+CGG | + | chr6_4:22484895-22484914 | None:intergenic | 30.0% |
| TGTTAGCAAATTTATGCGTT+GGG | - | chr6_4:22484895-22484914 | Msa0982770:intron | 30.0% | |
| !! | CAGTTTCGAAGTTTTGATAT+TGG | - | chr6_4:22484941-22484960 | Msa0982770:intron | 30.0% |
| TAGTTGACCATTTCTTATCA+CGG | - | chr6_4:22484979-22484998 | Msa0982770:intron | 30.0% | |
| ! | TTTGGGCTAATATTTGAAAC+AGG | - | chr6_4:22485093-22485112 | Msa0982770:intron | 30.0% |
| GATTAATATGGATAGCATTC+AGG | - | chr6_4:22485147-22485166 | Msa0982770:intron | 30.0% | |
| GAATTGAACACAGAATATGA+AGG | + | chr6_4:22485458-22485477 | None:intergenic | 30.0% | |
| !! | ATAACTTCTCTCCTTTTTCA+AGG | - | chr6_4:22485611-22485630 | Msa0982770:intron | 30.0% |
| ! | ATTAAGAGGAAGTGATAATG+TGG | - | chr6_4:22485681-22485700 | Msa0982770:CDS | 30.0% |
| ! | AGGATTTTTGTCCATTTTAG+AGG | - | chr6_4:22485750-22485769 | Msa0982770:CDS | 30.0% |
| AAAGATGAACTTGTACTGTA+CGG | + | chr6_4:22485821-22485840 | None:intergenic | 30.0% | |
| ATTCAGGATTTATTTCCTTG+AGG | - | chr6_4:22486000-22486019 | Msa0982770:intron | 30.0% | |
| TTCAGGATTTATTTCCTTGA+GGG | - | chr6_4:22486001-22486020 | Msa0982770:intron | 30.0% | |
| ! | AAATAAAAGGTACAGCTTCT+TGG | - | chr6_4:22486052-22486071 | Msa0982770:intron | 30.0% |
| !! | AAGTCAAAATCTCAAGTTGA+TGG | - | chr6_4:22486274-22486293 | Msa0982770:CDS | 30.0% |
| !!! | ATTCTAATGTCTGTTTTTGC+TGG | - | chr6_4:22486376-22486395 | Msa0982770:five_prime_UTR | 30.0% |
| AACATATATCAATGTAGGTG+AGG | - | chr6_4:22486455-22486474 | Msa0982770:five_prime_UTR | 30.0% | |
| ! | ATGTATGGTTTATGACTTGT+AGG | - | chr6_4:22486487-22486506 | Msa0982770:five_prime_UTR | 30.0% |
| GCTTACACATATAAGCACAA+GGG | + | chr6_4:22480988-22481007 | None:intergenic | 35.0% | |
| AGCTTACACATATAAGCACA+AGG | + | chr6_4:22480989-22481008 | None:intergenic | 35.0% | |
| TTGTGCTTATATGTGTAAGC+TGG | - | chr6_4:22480988-22481007 | Msa0982770:three_prime_UTR | 35.0% | |
| GACTATTCCTCTGATTCTAA+TGG | - | chr6_4:22481179-22481198 | Msa0982770:three_prime_UTR | 35.0% | |
| !!! | TGATTGTTATTTTGGTTGGC+AGG | - | chr6_4:22481670-22481689 | Msa0982770:intron | 35.0% |
| !!! | GATTGTTATTTTGGTTGGCA+GGG | - | chr6_4:22481671-22481690 | Msa0982770:intron | 35.0% |
| !! | AGTTGGTGATAGTAAATCTC+TGG | - | chr6_4:22481715-22481734 | Msa0982770:intron | 35.0% |
| ATGTCAAGTATTTGTGCATC+CGG | - | chr6_4:22481942-22481961 | Msa0982770:intron | 35.0% | |
| AAAATCTTTCCTTCCGATTC+CGG | + | chr6_4:22481964-22481983 | None:intergenic | 35.0% | |
| TCTCAACTTGGTAAAAAGAC+AGG | - | chr6_4:22481994-22482013 | Msa0982770:intron | 35.0% | |
| TGAAACCAATCACATTAAGC+AGG | + | chr6_4:22482049-22482068 | None:intergenic | 35.0% | |
| AGTGGTATTTAAACAAGTGG+TGG | - | chr6_4:22482185-22482204 | Msa0982770:CDS | 35.0% | |
| !! | TTTGGGTTGTTGTGTTGTTA+TGG | - | chr6_4:22482209-22482228 | Msa0982770:CDS | 35.0% |
| AAAGCCTCTTACATCTACAA+TGG | - | chr6_4:22482239-22482258 | Msa0982770:intron | 35.0% | |
| CTTACCATTGTAGATGTAAG+AGG | + | chr6_4:22482246-22482265 | None:intergenic | 35.0% | |
| AATTGTTGAAATGGGAGGTT+AGG | - | chr6_4:22482288-22482307 | Msa0982770:intron | 35.0% | |
| ACATGACCATAAATTAGAGG+GGG | + | chr6_4:22482429-22482448 | None:intergenic | 35.0% | |
| !! | TTTTTAAGCTTCGGCATCAA+TGG | - | chr6_4:22482564-22482583 | Msa0982770:intron | 35.0% |
| TCATATGATCCTTCTTGAAG+TGG | - | chr6_4:22482590-22482609 | Msa0982770:intron | 35.0% | |
| TATGGCATTGCTTGTTTCAA+AGG | - | chr6_4:22482731-22482750 | Msa0982770:intron | 35.0% | |
| AGAGAGTTATTGTTTAGACG+AGG | + | chr6_4:22482901-22482920 | None:intergenic | 35.0% | |
| !! | AACAAGGTATTGCAAAGAGA+TGG | - | chr6_4:22483033-22483052 | Msa0982770:intron | 35.0% |
| !! | ACAAGGTATTGCAAAGAGAT+GGG | - | chr6_4:22483034-22483053 | Msa0982770:intron | 35.0% |
| ! | AACTTATACAGGCTCTAGTT+TGG | + | chr6_4:22483193-22483212 | None:intergenic | 35.0% |
| AACACATCCAGAACTTATAC+AGG | + | chr6_4:22483204-22483223 | None:intergenic | 35.0% | |
| !! | TAAGTTCTGGATGTGTTGTA+TGG | - | chr6_4:22483207-22483226 | Msa0982770:intron | 35.0% |
| AATTCAGACCTTAGTAGACA+AGG | - | chr6_4:22483257-22483276 | Msa0982770:intron | 35.0% | |
| GTAGACAAGGAATGAAATCT+AGG | - | chr6_4:22483270-22483289 | Msa0982770:intron | 35.0% | |
| ! | TGTATAATCAACTGATTCCG+AGG | + | chr6_4:22483772-22483791 | None:intergenic | 35.0% |
| TTCCTTAGACCATCTACAAT+GGG | - | chr6_4:22483917-22483936 | Msa0982770:intron | 35.0% | |
| TATTGCATAGAGAGGAATGA+TGG | - | chr6_4:22484049-22484068 | Msa0982770:intron | 35.0% | |
| !! | CTTTAAAGCGGCAACTAAAA+AGG | - | chr6_4:22484179-22484198 | Msa0982770:intron | 35.0% |
| GATCCAGTTAATCGCATTAT+TGG | - | chr6_4:22484369-22484388 | Msa0982770:intron | 35.0% | |
| CTTCCAATAATGCGATTAAC+TGG | + | chr6_4:22484375-22484394 | None:intergenic | 35.0% | |
| AACAATACCTTACACTTACG+TGG | + | chr6_4:22484492-22484511 | None:intergenic | 35.0% | |
| ATACTCTTACTAGGGACATT+GGG | - | chr6_4:22484537-22484556 | Msa0982770:CDS | 35.0% | |
| !! | TTTTAGCAGCTCTAACAACT+TGG | + | chr6_4:22484602-22484621 | None:intergenic | 35.0% |
| AAAAGTAGCTGTCAATAACC+TGG | + | chr6_4:22484642-22484661 | None:intergenic | 35.0% | |
| ! | GATACAGATTTGTGAGCTTT+TGG | + | chr6_4:22484866-22484885 | None:intergenic | 35.0% |
| AGCTCACAAATCTGTATCAT+TGG | - | chr6_4:22484868-22484887 | Msa0982770:intron | 35.0% | |
| !! | ACGCATAAATTTGCTAACAC+GGG | + | chr6_4:22484894-22484913 | None:intergenic | 35.0% |
| GTGTTAGCAAATTTATGCGT+TGG | - | chr6_4:22484894-22484913 | Msa0982770:intron | 35.0% | |
| AGTTGACCATTTCTTATCAC+GGG | - | chr6_4:22484980-22484999 | Msa0982770:intron | 35.0% | |
| ! | TTTGAAACAGGCTTTGATTC+TGG | - | chr6_4:22485105-22485124 | Msa0982770:intron | 35.0% |
| ACTTGGTTGTCGGATTAATA+TGG | - | chr6_4:22485135-22485154 | Msa0982770:intron | 35.0% | |
| ACGATAAATAAAGGGAAGGT+AGG | + | chr6_4:22485207-22485226 | None:intergenic | 35.0% | |
| AAGCTTGTATCCCAAAGAAA+TGG | - | chr6_4:22485280-22485299 | Msa0982770:CDS | 35.0% | |
| AGCTTGTATCCCAAAGAAAT+GGG | - | chr6_4:22485281-22485300 | Msa0982770:CDS | 35.0% | |
| TCATCAACAGTCATTACATC+AGG | + | chr6_4:22485308-22485327 | None:intergenic | 35.0% | |
| TATTCAAGAGAGAGTTGAGA+AGG | - | chr6_4:22485364-22485383 | Msa0982770:intron | 35.0% | |
| GGAGGAAACAAATATACCTT+GGG | + | chr6_4:22485436-22485455 | None:intergenic | 35.0% | |
| GAAAAAGGAGAAAACCATGT+GGG | + | chr6_4:22485505-22485524 | None:intergenic | 35.0% | |
| TGAAAAAGGAGAAAACCATG+TGG | + | chr6_4:22485506-22485525 | None:intergenic | 35.0% | |
| CTTCCTAAAGCAGAATTCTT+CGG | + | chr6_4:22485661-22485680 | None:intergenic | 35.0% | |
| !! | TCTGCTTTAGGAAGATTAAG+AGG | - | chr6_4:22485667-22485686 | Msa0982770:CDS | 35.0% |
| ! | GAAAGAAACCATTTTGTGCA+AGG | + | chr6_4:22485781-22485800 | None:intergenic | 35.0% |
| ACAGTACAAGTTCATCTTTC+TGG | - | chr6_4:22485822-22485841 | Msa0982770:intron | 35.0% | |
| ATGTTGATGCAAATGACAGT+TGG | - | chr6_4:22485876-22485895 | Msa0982770:intron | 35.0% | |
| GAATAAAAACGTTTCCCTCA+AGG | + | chr6_4:22486018-22486037 | None:intergenic | 35.0% | |
| !! | ATTGCGTTGATGGTTTATAG+CGG | - | chr6_4:22486207-22486226 | Msa0982770:intron | 35.0% |
| AGACATTAGAATGTGCTTGA+GGG | + | chr6_4:22486368-22486387 | None:intergenic | 35.0% | |
| GTGAGGATAGAGAAAATGTA+TGG | - | chr6_4:22486472-22486491 | Msa0982770:five_prime_UTR | 35.0% | |
| ATATCCTTGAAATGCCTCAT+AGG | + | chr6_4:22486555-22486574 | None:intergenic | 35.0% | |
| ! | TATGAGGCATTTCAAGGATA+TGG | - | chr6_4:22486554-22486573 | Msa0982770:five_prime_UTR | 35.0% |
| ! | ATAATGGAGGAAGCAGTTTG+TGG | + | chr6_4:22481069-22481088 | None:intergenic | 40.0% |
| TGGTGATAGTAAATCTCTGG+TGG | - | chr6_4:22481718-22481737 | Msa0982770:intron | 40.0% | |
| GGCGACTCTTTATCAAAACT+TGG | - | chr6_4:22481812-22481831 | Msa0982770:intron | 40.0% | |
| CTAAGACAAGCTAAACAAGC+TGG | + | chr6_4:22481859-22481878 | None:intergenic | 40.0% | |
| AGTATTTGTGCATCCGGAAT+CGG | - | chr6_4:22481948-22481967 | Msa0982770:intron | 40.0% | |
| ! | GGAATCGGAAGGAAAGATTT+TGG | - | chr6_4:22481963-22481982 | Msa0982770:intron | 40.0% |
| TGGTAAAAAGACAGGTGTGT+TGG | - | chr6_4:22482002-22482021 | Msa0982770:intron | 40.0% | |
| GGTAAAAAGACAGGTGTGTT+GGG | - | chr6_4:22482003-22482022 | Msa0982770:intron | 40.0% | |
| CATTATCCTCTTGAAACCAG+TGG | - | chr6_4:22482361-22482380 | Msa0982770:CDS | 40.0% | |
| TAGAATGTATCAAGTGCCAC+TGG | + | chr6_4:22482380-22482399 | None:intergenic | 40.0% | |
| GGCACTTGATACATTCTAGA+AGG | - | chr6_4:22482382-22482401 | Msa0982770:intron | 40.0% | |
| TGGAAAAGTCCACTTCAAGA+AGG | + | chr6_4:22482602-22482621 | None:intergenic | 40.0% | |
| AATCAACCCCCTTTAACCTA+GGG | + | chr6_4:22482779-22482798 | None:intergenic | 40.0% | |
| TAATCAACCCCCTTTAACCT+AGG | + | chr6_4:22482780-22482799 | None:intergenic | 40.0% | |
| AGTTATTGTTTAGACGAGGC+AGG | + | chr6_4:22482897-22482916 | None:intergenic | 40.0% | |
| AACTCTCTCTTACATGGAAC+AGG | - | chr6_4:22482913-22482932 | Msa0982770:CDS | 40.0% | |
| ACTAGAGCCTGTATAAGTTC+TGG | - | chr6_4:22483194-22483213 | Msa0982770:intron | 40.0% | |
| GTTCCTTAGACCATCTACAA+TGG | - | chr6_4:22483916-22483935 | Msa0982770:intron | 40.0% | |
| TCCTTAGACCATCTACAATG+GGG | - | chr6_4:22483918-22483937 | Msa0982770:intron | 40.0% | |
| AACAGAAGTGGCAAGTAACT+AGG | + | chr6_4:22483947-22483966 | None:intergenic | 40.0% | |
| CGGCAACTAAAAAGGAATTG+AGG | - | chr6_4:22484187-22484206 | Msa0982770:intron | 40.0% | |
| CGATTCAGGGATGATATAAC+AGG | + | chr6_4:22484333-22484352 | None:intergenic | 40.0% | |
| AGACGAGATTATGCGATTCA+GGG | + | chr6_4:22484346-22484365 | None:intergenic | 40.0% | |
| CGCATTATTGGAAGTTTGAG+TGG | - | chr6_4:22484381-22484400 | Msa0982770:intron | 40.0% | |
| CATACTCTTACTAGGGACAT+TGG | - | chr6_4:22484536-22484555 | Msa0982770:CDS | 40.0% | |
| TACTCTTACTAGGGACATTG+GGG | - | chr6_4:22484538-22484557 | Msa0982770:CDS | 40.0% | |
| GTAATGAGTGAGGTTGAAGA+CGG | - | chr6_4:22484564-22484583 | Msa0982770:intron | 40.0% | |
| TGTTAGAGCTGCTAAAAGTC+TGG | - | chr6_4:22484605-22484624 | Msa0982770:intron | 40.0% | |
| GTTAGAGCTGCTAAAAGTCT+GGG | - | chr6_4:22484606-22484625 | Msa0982770:intron | 40.0% | |
| TTAGAGCTGCTAAAAGTCTG+GGG | - | chr6_4:22484607-22484626 | Msa0982770:intron | 40.0% | |
| TGGAATGGATGTTGCTAGAA+AGG | - | chr6_4:22484787-22484806 | Msa0982770:intron | 40.0% | |
| ! | TGTGAGCTTTTGGATAAAGC+AGG | + | chr6_4:22484856-22484875 | None:intergenic | 40.0% |
| GAATGACCCGTGATAAGAAA+TGG | + | chr6_4:22484989-22485008 | None:intergenic | 40.0% | |
| !! | TTGATTCTGGCTCGAATACT+TGG | - | chr6_4:22485118-22485137 | Msa0982770:intron | 40.0% |
| GCTTGTATCCCAAAGAAATG+GGG | - | chr6_4:22485282-22485301 | Msa0982770:CDS | 40.0% | |
| !!! | GTTGATGACTTTTTGAGTCG+TGG | - | chr6_4:22485320-22485339 | Msa0982770:CDS | 40.0% |
| ! | CGATATGTCTGTGTCATTGA+GGG | - | chr6_4:22485410-22485429 | Msa0982770:intron | 40.0% |
| GGGAGGAAACAAATATACCT+TGG | + | chr6_4:22485437-22485456 | None:intergenic | 40.0% | |
| TGAACACAGAATATGAAGGG+AGG | + | chr6_4:22485454-22485473 | None:intergenic | 40.0% | |
| CCAACTTCACACCTTGAAAA+AGG | + | chr6_4:22485625-22485644 | None:intergenic | 40.0% | |
| !!! | CCTTTTTCAAGGTGTGAAGT+TGG | - | chr6_4:22485622-22485641 | Msa0982770:intron | 40.0% |
| CTTCCGAAGAATTCTGCTTT+AGG | - | chr6_4:22485655-22485674 | Msa0982770:intron | 40.0% | |
| ! | GACAGTTGGAAGTATACACT+CGG | - | chr6_4:22485890-22485909 | Msa0982770:intron | 40.0% |
| !! | AACCAACCGCTTGTTATTCA+AGG | - | chr6_4:22485922-22485941 | Msa0982770:intron | 40.0% |
| GAATATCCACGATATCAGCA+AGG | + | chr6_4:22485984-22486003 | None:intergenic | 40.0% | |
| TGCTGATATCGTGGATATTC+AGG | - | chr6_4:22485984-22486003 | Msa0982770:intron | 40.0% | |
| !! | TTGCGTTGATGGTTTATAGC+GGG | - | chr6_4:22486208-22486227 | Msa0982770:intron | 40.0% |
| GACATTAGAATGTGCTTGAG+GGG | + | chr6_4:22486367-22486386 | None:intergenic | 40.0% | |
| CAGACATTAGAATGTGCTTG+AGG | + | chr6_4:22486369-22486388 | None:intergenic | 40.0% | |
| ! | GATTCCTATGAGGCATTTCA+AGG | - | chr6_4:22486548-22486567 | Msa0982770:five_prime_UTR | 40.0% |
| CCACAACCCATTAGAATCAG+AGG | + | chr6_4:22481189-22481208 | None:intergenic | 45.0% | |
| !! | CCTCTGATTCTAATGGGTTG+TGG | - | chr6_4:22481186-22481205 | Msa0982770:three_prime_UTR | 45.0% |
| !! | CTGATTCTAATGGGTTGTGG+AGG | - | chr6_4:22481189-22481208 | Msa0982770:three_prime_UTR | 45.0% |
| ATGAGACGATGTGTTGGAGA+AGG | + | chr6_4:22481227-22481246 | None:intergenic | 45.0% | |
| AACGACATGAGACGATGTGT+TGG | + | chr6_4:22481233-22481252 | None:intergenic | 45.0% | |
| TCGTTCTCTTCACTCTTCAC+AGG | - | chr6_4:22481248-22481267 | Msa0982770:intron | 45.0% | |
| TTGGAGATCGCATCTCAACT+TGG | - | chr6_4:22481982-22482001 | Msa0982770:intron | 45.0% | |
| CAGCACCTGCTTAATGTGAT+TGG | - | chr6_4:22482041-22482060 | Msa0982770:intron | 45.0% | |
| !! | TGCTAGCTCTGACACTATAG+TGG | - | chr6_4:22482167-22482186 | Msa0982770:CDS | 45.0% |
| TGCACAAGACCCTAGGTTAA+AGG | - | chr6_4:22482767-22482786 | Msa0982770:intron | 45.0% | |
| GCACAAGACCCTAGGTTAAA+GGG | - | chr6_4:22482768-22482787 | Msa0982770:intron | 45.0% | |
| CACAAGACCCTAGGTTAAAG+GGG | - | chr6_4:22482769-22482788 | Msa0982770:intron | 45.0% | |
| ACAAGACCCTAGGTTAAAGG+GGG | - | chr6_4:22482770-22482789 | Msa0982770:intron | 45.0% | |
| TCTCTCTTACATGGAACAGG+AGG | - | chr6_4:22482916-22482935 | Msa0982770:CDS | 45.0% | |
| !! | CACTTACAGTTGACTCGTGT+CGG | + | chr6_4:22482976-22482995 | None:intergenic | 45.0% |
| CCTTAGACCATCTACAATGG+GGG | - | chr6_4:22483919-22483938 | Msa0982770:intron | 45.0% | |
| CTTAGACCATCTACAATGGG+GGG | - | chr6_4:22483920-22483939 | Msa0982770:intron | 45.0% | |
| ! | TTGAGGTGCTTTGACTGATC+TGG | - | chr6_4:22484275-22484294 | Msa0982770:intron | 45.0% |
| CAGACGAGATTATGCGATTC+AGG | + | chr6_4:22484347-22484366 | None:intergenic | 45.0% | |
| CTGAATCGCATAATCTCGTC+TGG | - | chr6_4:22484345-22484364 | Msa0982770:intron | 45.0% | |
| CAGTCTTCCACGTAAGTGTA+AGG | - | chr6_4:22484482-22484501 | Msa0982770:intron | 45.0% | |
| ATTGGGGTACGTAATGAGTG+AGG | - | chr6_4:22484554-22484573 | Msa0982770:intron | 45.0% | |
| TAGCAACATCCATTCCACCA+AGG | + | chr6_4:22484784-22484803 | None:intergenic | 45.0% | |
| ! | GGGTCATTCTGCACTACTTT+TGG | - | chr6_4:22485000-22485019 | Msa0982770:intron | 45.0% |
| TGGCTCGAATACTTGGTTGT+CGG | - | chr6_4:22485125-22485144 | Msa0982770:intron | 45.0% | |
| ACATCAGGCCCCATTTCTTT+GGG | + | chr6_4:22485293-22485312 | None:intergenic | 45.0% | |
| TACATCAGGCCCCATTTCTT+TGG | + | chr6_4:22485294-22485313 | None:intergenic | 45.0% | |
| GTTGAGAAGGCAGCTTCAAA+CGG | - | chr6_4:22485377-22485396 | Msa0982770:intron | 45.0% | |
| ! | GCGATATGTCTGTGTCATTG+AGG | - | chr6_4:22485409-22485428 | Msa0982770:intron | 45.0% |
| AAAGGAGAAAACCATGTGGG+TGG | + | chr6_4:22485502-22485521 | None:intergenic | 45.0% | |
| ! | GCAAGGTCAAGCCTCTAAAA+TGG | + | chr6_4:22485764-22485783 | None:intergenic | 45.0% |
| AGGCTTGACCTTGCACAAAA+TGG | - | chr6_4:22485770-22485789 | Msa0982770:CDS | 45.0% | |
| CACCTTGAATAACAAGCGGT+TGG | + | chr6_4:22485927-22485946 | None:intergenic | 45.0% | |
| CCAGCACCTTGAATAACAAG+CGG | + | chr6_4:22485931-22485950 | None:intergenic | 45.0% | |
| AGCTTCTTGGTATCTTCTCC+TGG | - | chr6_4:22486065-22486084 | Msa0982770:intron | 45.0% | |
| AAGCACGTCAGCAATATTCC+AGG | + | chr6_4:22486086-22486105 | None:intergenic | 45.0% | |
| GCTTACCTGCAGACTTCATA+TGG | - | chr6_4:22486305-22486324 | Msa0982770:CDS | 45.0% | |
| ACCTGCAGACTTCATATGGA+TGG | - | chr6_4:22486309-22486328 | Msa0982770:CDS | 45.0% | |
| TCCATCCATATGAAGTCTGC+AGG | + | chr6_4:22486313-22486332 | None:intergenic | 45.0% | |
| AGCTACTGCAGATTCCTATG+AGG | - | chr6_4:22486538-22486557 | Msa0982770:five_prime_UTR | 45.0% | |
| !! | AATGATTAATTAAAAAATAA+TGG | + | chr6_4:22483689-22483708 | None:intergenic | 5.0% |
| !!! | ATAAATTTTGTTATTTTTTA+TGG | + | chr6_4:22484128-22484147 | None:intergenic | 5.0% |
| !!! | TATTATTATTATTTTTAAGT+TGG | - | chr6_4:22486415-22486434 | Msa0982770:five_prime_UTR | 5.0% |
| !!! | ATTTTTCATTTAAATAAAAA+AGG | - | chr6_4:22486514-22486533 | Msa0982770:five_prime_UTR | 5.0% |
| !! | CTAATGGGTTGTGGAGGAGT+TGG | - | chr6_4:22481195-22481214 | Msa0982770:three_prime_UTR | 50.0% |
| GGACTCTGCTTGAGAGTTGT+GGG | - | chr6_4:22481692-22481711 | Msa0982770:intron | 50.0% | |
| TGCTTGAGAGTTGTGGGAGT+TGG | - | chr6_4:22481698-22481717 | Msa0982770:intron | 50.0% | |
| !! | GAACTTTGTCGGCTCAAGCA+TGG | - | chr6_4:22481788-22481807 | Msa0982770:intron | 50.0% |
| TTTGTGCATCCGGAATCGGA+AGG | - | chr6_4:22481952-22481971 | Msa0982770:intron | 50.0% | |
| GCTAGCAGTGCAATCGACAA+AGG | + | chr6_4:22482154-22482173 | None:intergenic | 50.0% | |
| !! | CAAGTGCCACTGGTTTCAAG+AGG | + | chr6_4:22482370-22482389 | None:intergenic | 50.0% |
| ACTGAAGTGCACAAGACCCT+AGG | - | chr6_4:22482760-22482779 | Msa0982770:intron | 50.0% | |
| GTAGATGGTCTAAGGAACCG+AGG | + | chr6_4:22483914-22483933 | None:intergenic | 50.0% | |
| CCCCCATTGTAGATGGTCTA+AGG | + | chr6_4:22483922-22483941 | None:intergenic | 50.0% | |
| GCTCTAACAACTTGGCTCAG+TGG | + | chr6_4:22484594-22484613 | None:intergenic | 50.0% | |
| GCAAATTTATGCGTTGGGCG+TGG | - | chr6_4:22484900-22484919 | Msa0982770:intron | 50.0% | |
| TTGTCACACTTCCACCCACA+TGG | - | chr6_4:22485488-22485507 | Msa0982770:intron | 50.0% | |
| !! | CCGCTTGTTATTCAAGGTGC+TGG | - | chr6_4:22485928-22485947 | Msa0982770:intron | 50.0% |
| !! | GTTATTCAAGGTGCTGGAGC+TGG | - | chr6_4:22485934-22485953 | Msa0982770:intron | 50.0% |
| TGGTGTCCTTGCTGATATCG+TGG | - | chr6_4:22485975-22485994 | Msa0982770:intron | 50.0% | |
| !! | AGGGGAAAAGAGTGCTTCTC+AGG | + | chr6_4:22486349-22486368 | None:intergenic | 50.0% |
| GGGACTCTGCTTGAGAGTTG+TGG | - | chr6_4:22481691-22481710 | Msa0982770:intron | 55.0% | |
| !! | CTTTGTCGGCTCAAGCATGG+TGG | - | chr6_4:22481791-22481810 | Msa0982770:intron | 55.0% |
| CTAGGACCCCCCATTGTAGA+TGG | + | chr6_4:22483929-22483948 | None:intergenic | 55.0% | |
| ! | AGTCTGGGGTACACTGAACC+AGG | - | chr6_4:22484621-22484640 | Msa0982770:intron | 55.0% |
| ATTCCACCAAGGTCGTCACG+CGG | + | chr6_4:22484773-22484792 | None:intergenic | 55.0% | |
| TATGCGTTGGGCGTGGCTAA+TGG | - | chr6_4:22484907-22484926 | Msa0982770:intron | 55.0% | |
| ATGCGTTGGGCGTGGCTAAT+GGG | - | chr6_4:22484908-22484927 | Msa0982770:intron | 55.0% | |
| ! | TCTGTGTCATTGAGGGCCCA+AGG | - | chr6_4:22485417-22485436 | Msa0982770:intron | 55.0% |
| GGAAATGACACGACTGCAGC+TGG | - | chr6_4:22485955-22485974 | Msa0982770:intron | 55.0% | |
| GACTCGTGTCGGATACGACG+TGG | + | chr6_4:22482965-22482984 | None:intergenic | 60.0% | |
| GCGTGACGACCTTGGTGGAA+TGG | - | chr6_4:22484772-22484791 | Msa0982770:intron | 60.0% | |
| TGCGTTGGGCGTGGCTAATG+GGG | - | chr6_4:22484909-22484928 | Msa0982770:intron | 60.0% | |
| GCAGATCCGCGTGACGACCT+TGG | - | chr6_4:22484764-22484783 | Msa0982770:intron | 65.0% | |
| GATCCGCGTGACGACCTTGG+TGG | - | chr6_4:22484767-22484786 | Msa0982770:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 22480921 | 22486583 | 22480921 | ID=Msa0982770;Name=Msa0982770 |
| chr6_4 | mRNA | 22480921 | 22486583 | 22480921 | ID=Msa0982770-mRNA-1;Parent=Msa0982770;Name=Msa0982770-mRNA-1;_AED=0.15;_eAED=0.15;_QI=253|0.90|1|1|0.81|0.83|12|343|360 |
| chr6_4 | exon | 22480921 | 22481245 | 22480921 | ID=Msa0982770-mRNA-1:exon:7217;Parent=Msa0982770-mRNA-1 |
| chr6_4 | exon | 22481444 | 22481609 | 22481444 | ID=Msa0982770-mRNA-1:exon:7216;Parent=Msa0982770-mRNA-1 |
| chr6_4 | exon | 22482066 | 22482229 | 22482066 | ID=Msa0982770-mRNA-1:exon:7215;Parent=Msa0982770-mRNA-1 |
| chr6_4 | exon | 22482336 | 22482389 | 22482336 | ID=Msa0982770-mRNA-1:exon:7214;Parent=Msa0982770-mRNA-1 |
| chr6_4 | exon | 22482696 | 22482736 | 22482696 | ID=Msa0982770-mRNA-1:exon:7213;Parent=Msa0982770-mRNA-1 |
| chr6_4 | exon | 22482862 | 22482954 | 22482862 | ID=Msa0982770-mRNA-1:exon:7212;Parent=Msa0982770-mRNA-1 |
| chr6_4 | exon | 22483102 | 22483189 | 22483102 | ID=Msa0982770-mRNA-1:exon:7211;Parent=Msa0982770-mRNA-1 |
| chr6_4 | exon | 22484516 | 22484569 | 22484516 | ID=Msa0982770-mRNA-1:exon:7210;Parent=Msa0982770-mRNA-1 |
| chr6_4 | exon | 22485244 | 22485359 | 22485244 | ID=Msa0982770-mRNA-1:exon:7209;Parent=Msa0982770-mRNA-1 |
| chr6_4 | exon | 22485489 | 22485566 | 22485489 | ID=Msa0982770-mRNA-1:exon:7208;Parent=Msa0982770-mRNA-1 |
| chr6_4 | exon | 22485662 | 22485812 | 22485662 | ID=Msa0982770-mRNA-1:exon:7207;Parent=Msa0982770-mRNA-1 |
| chr6_4 | exon | 22486235 | 22486583 | 22486235 | ID=Msa0982770-mRNA-1:exon:7206;Parent=Msa0982770-mRNA-1 |
| chr6_4 | five_prime_UTR | 22486331 | 22486583 | 22486331 | ID=Msa0982770-mRNA-1:five_prime_utr;Parent=Msa0982770-mRNA-1 |
| chr6_4 | CDS | 22486235 | 22486330 | 22486235 | ID=Msa0982770-mRNA-1:cds;Parent=Msa0982770-mRNA-1 |
| chr6_4 | CDS | 22485662 | 22485812 | 22485662 | ID=Msa0982770-mRNA-1:cds;Parent=Msa0982770-mRNA-1 |
| chr6_4 | CDS | 22485489 | 22485566 | 22485489 | ID=Msa0982770-mRNA-1:cds;Parent=Msa0982770-mRNA-1 |
| chr6_4 | CDS | 22485244 | 22485359 | 22485244 | ID=Msa0982770-mRNA-1:cds;Parent=Msa0982770-mRNA-1 |
| chr6_4 | CDS | 22484516 | 22484569 | 22484516 | ID=Msa0982770-mRNA-1:cds;Parent=Msa0982770-mRNA-1 |
| chr6_4 | CDS | 22483102 | 22483189 | 22483102 | ID=Msa0982770-mRNA-1:cds;Parent=Msa0982770-mRNA-1 |
| chr6_4 | CDS | 22482862 | 22482954 | 22482862 | ID=Msa0982770-mRNA-1:cds;Parent=Msa0982770-mRNA-1 |
| chr6_4 | CDS | 22482696 | 22482736 | 22482696 | ID=Msa0982770-mRNA-1:cds;Parent=Msa0982770-mRNA-1 |
| chr6_4 | CDS | 22482336 | 22482389 | 22482336 | ID=Msa0982770-mRNA-1:cds;Parent=Msa0982770-mRNA-1 |
| chr6_4 | CDS | 22482066 | 22482229 | 22482066 | ID=Msa0982770-mRNA-1:cds;Parent=Msa0982770-mRNA-1 |
| chr6_4 | CDS | 22481462 | 22481609 | 22481462 | ID=Msa0982770-mRNA-1:cds;Parent=Msa0982770-mRNA-1 |
| chr6_4 | three_prime_UTR | 22481444 | 22481461 | 22481444 | ID=Msa0982770-mRNA-1:three_prime_utr;Parent=Msa0982770-mRNA-1 |
| chr6_4 | three_prime_UTR | 22480921 | 22481245 | 22480921 | ID=Msa0982770-mRNA-1:three_prime_utr;Parent=Msa0982770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
