Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466000 | XP_003601314.1 | 92.705 | 329 | 24 | 0 | 1 | 329 | 1 | 329 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466000 | sp|P57290|AKH_BUCAI | 32.440 | 336 | 191 | 6 | 2 | 329 | 465 | 772 | 4.50e-40 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466000 | B7FM35 | 92.705 | 329 | 24 | 0 | 1 | 329 | 1 | 329 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0466000 | 0.810488 | 1.124408e-50 | -8.615850e-47 |
| Msa0110970 | Msa0466000 | 0.818661 | 1.744930e-52 | -8.615850e-47 |
| Msa0157290 | Msa0466000 | 0.810740 | 9.916022e-51 | -8.615850e-47 |
| Msa0466000 | Msa0760380 | 0.808381 | 3.184771e-50 | -8.615850e-47 |
| Msa0466000 | Msa0880140 | 0.810080 | 1.376799e-50 | -8.615850e-47 |
| Msa0466000 | Msa0982770 | 0.940510 | 2.064436e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466000 | MtrunA17_Chr3g0118521 | 92.705 | 329 | 24 | 0 | 1 | 329 | 1 | 329 | 0.0 | 605 |
| Msa0466000 | MtrunA17_Chr8g0377971 | 33.654 | 312 | 178 | 7 | 3 | 309 | 557 | 844 | 5.94e-40 | 150 |
| Msa0466000 | MtrunA17_Chr3g0121961 | 33.438 | 317 | 182 | 9 | 3 | 314 | 547 | 839 | 2.41e-39 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466000 | AT5G21060.1 | 68.471 | 314 | 99 | 0 | 1 | 314 | 1 | 314 | 1.94e-150 | 429 |
| Msa0466000 | AT5G21060.3 | 68.038 | 316 | 99 | 1 | 1 | 314 | 1 | 316 | 1.61e-148 | 424 |
| Msa0466000 | AT5G21060.2 | 68.038 | 316 | 99 | 1 | 1 | 314 | 1 | 316 | 1.86e-148 | 424 |
| Msa0466000 | AT1G31230.1 | 34.694 | 245 | 150 | 4 | 81 | 317 | 605 | 847 | 5.90e-36 | 139 |
| Msa0466000 | AT4G19710.2 | 32.812 | 320 | 186 | 7 | 3 | 317 | 557 | 852 | 3.25e-35 | 137 |
| Msa0466000 | AT4G19710.1 | 32.237 | 304 | 177 | 7 | 3 | 301 | 557 | 836 | 5.21e-31 | 124 |
Find 117 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTGATGATTTGTTGAATA+AGG | 0.191803 | 3_3:-66520058 | Msa0466000:CDS |
| TGCTGATATCGTGGATATTC+AGG | 0.217796 | 3_3:-66515722 | Msa0466000:CDS |
| TTCAAGGCATTTCAAGGATA+TGG | 0.230381 | 3_3:-66515141 | Msa0466000:three_prime_UTR |
| GGAATCGGAAGGAAAGATTT+TGG | 0.238686 | 3_3:-66519737 | Msa0466000:CDS |
| TACATCAGGCCCCATTTCTT+TGG | 0.243020 | 3_3:+66516415 | None:intergenic |
| TTTGAAACAGGCTTTGATTC+TGG | 0.253238 | 3_3:-66516601 | Msa0466000:intron |
| ACTTGGTTGTCGGATTAATA+TGG | 0.269492 | 3_3:-66516571 | Msa0466000:CDS |
| CAGACGAGATTATGCGATTC+AGG | 0.269791 | 3_3:+66517362 | None:intergenic |
| GTGAATTTAAAGAAAATAAA+AGG | 0.273889 | 3_3:-66515667 | Msa0466000:intron |
| ATTTAAACAAGTGGTGGATT+TGG | 0.276380 | 3_3:-66519509 | Msa0466000:CDS |
| GACTATTCCTCTGATTCTAA+TGG | 0.288487 | 3_3:-66520621 | Msa0466000:CDS |
| GATTAATATGGATAGCATTC+AGG | 0.313276 | 3_3:-66516559 | Msa0466000:intron |
| TTTGGGTTGTTGTGTTGTTA+TGG | 0.319434 | 3_3:-66519491 | Msa0466000:CDS |
| GTTGATGATTTGTTGAATAA+GGG | 0.320022 | 3_3:-66520057 | Msa0466000:CDS |
| GATCCAGTTAATCGCATTAT+TGG | 0.322404 | 3_3:-66517337 | Msa0466000:CDS |
| TTTAAACAAGTGGTGGATTT+GGG | 0.330723 | 3_3:-66519508 | Msa0466000:CDS |
| CTTCCAATAATGCGATTAAC+TGG | 0.332630 | 3_3:+66517334 | None:intergenic |
| TTATCAAAACTTGGTGATCT+TGG | 0.334643 | 3_3:-66519979 | Msa0466000:intron |
| AAAATCTTTCCTTCCGATTC+CGG | 0.338690 | 3_3:+66519739 | None:intergenic |
| GTGAAATATTAAATTAAAGT+TGG | 0.355896 | 3_3:+66520680 | None:intergenic |
| ATGTATGGTTTATGACTTGT+AGG | 0.367114 | 3_3:-66515219 | Msa0466000:three_prime_UTR |
| TTGATTCTGGCTCGAATACT+TGG | 0.368413 | 3_3:-66516588 | Msa0466000:CDS |
| ACATCAGGCCCCATTTCTTT+GGG | 0.369952 | 3_3:+66516416 | None:intergenic |
| CTTACCATTGTAGATGTAAG+AGG | 0.378420 | 3_3:+66519457 | None:intergenic |
| TGTTAGAGCTGCTAAAAGTC+TGG | 0.379369 | 3_3:-66517101 | Msa0466000:CDS |
| TTCAGGATTTATTTCCTTGA+GGG | 0.390450 | 3_3:-66515705 | Msa0466000:CDS |
| CGATTCAGGGATGATATAAC+AGG | 0.397208 | 3_3:+66517376 | None:intergenic |
| TTGTGGAAATGTTAGTAGTA+AGG | 0.397603 | 3_3:+66520751 | None:intergenic |
| ACTATTCCTCTGATTCTAAT+GGG | 0.400587 | 3_3:-66520620 | Msa0466000:CDS |
| AAGCTTGTATCCCAAAGAAA+TGG | 0.403295 | 3_3:-66516426 | Msa0466000:CDS |
| ATACTCTTACTAGGGACATT+GGG | 0.405845 | 3_3:-66517169 | Msa0466000:intron |
| AAGTCAAAATCTCAAGTTGA+TGG | 0.407578 | 3_3:-66515432 | Msa0466000:three_prime_UTR |
| GCTTACCTGCAGACTTCATA+TGG | 0.408122 | 3_3:-66515401 | Msa0466000:three_prime_UTR |
| GGACTCTGCTTGAGAGTTGT+GGG | 0.411485 | 3_3:-66520108 | Msa0466000:CDS |
| AATGCCTTGAAATGCCTCAT+AGG | 0.414195 | 3_3:+66515153 | None:intergenic |
| AGCTTGTATCCCAAAGAAAT+GGG | 0.417096 | 3_3:-66516425 | Msa0466000:CDS |
| AACCAACCGCTTGTTATTCA+AGG | 0.432651 | 3_3:-66515784 | Msa0466000:CDS |
| CCGCTTGTTATTCAAGGTGC+TGG | 0.439103 | 3_3:-66515778 | Msa0466000:CDS |
| AGGGGAAAAGAGTGCTTCTC+AGG | 0.444167 | 3_3:+66515360 | None:intergenic |
| CCTCTGATTCTAATGGGTTG+TGG | 0.444812 | 3_3:-66520614 | Msa0466000:CDS |
| GGGACTCTGCTTGAGAGTTG+TGG | 0.445062 | 3_3:-66520109 | Msa0466000:CDS |
| TTAATATTTCACAAAAGAAA+AGG | 0.448339 | 3_3:-66520669 | Msa0466000:five_prime_UTR |
| TGCTTGAGAGTTGTGGGAGT+TGG | 0.449369 | 3_3:-66520102 | Msa0466000:CDS |
| AGTATTTGTGCATCCGGAAT+CGG | 0.454900 | 3_3:-66519752 | Msa0466000:CDS |
| AGGCATTTCAAGGCATTTCA+AGG | 0.457672 | 3_3:-66515147 | Msa0466000:three_prime_UTR |
| TTTGACTTGAAATGTATTCA+GGG | 0.458092 | 3_3:+66515447 | None:intergenic |
| ATGTCAAGTATTTGTGCATC+CGG | 0.460749 | 3_3:-66519758 | Msa0466000:CDS |
| CTAATGGGTTGTGGAGGAGT+TGG | 0.462718 | 3_3:-66520605 | Msa0466000:CDS |
| TGGCTCGAATACTTGGTTGT+CGG | 0.465975 | 3_3:-66516581 | Msa0466000:CDS |
| GATTCCTATGAGGCATTTCA+AGG | 0.466502 | 3_3:-66515157 | Msa0466000:three_prime_UTR |
| GGCGACTCTTTATCAAAACT+TGG | 0.468528 | 3_3:-66519988 | Msa0466000:CDS |
| TGGAATGGATGTTGCTAGAA+AGG | 0.469655 | 3_3:-66516919 | Msa0466000:intron |
| CTGAATCGCATAATCTCGTC+TGG | 0.472188 | 3_3:-66517361 | Msa0466000:CDS |
| GTTATTCAAGGTGCTGGAGC+TGG | 0.472892 | 3_3:-66515772 | Msa0466000:CDS |
| TGTGGAAATGTTAGTAGTAA+GGG | 0.490580 | 3_3:+66520752 | None:intergenic |
| CGCATTATTGGAAGTTTGAG+TGG | 0.502100 | 3_3:-66517325 | Msa0466000:intron |
| CGATATGTCTGTGTCATTGA+GGG | 0.505166 | 3_3:-66516296 | Msa0466000:CDS |
| GTTAGAGCTGCTAAAAGTCT+GGG | 0.506073 | 3_3:-66517100 | Msa0466000:CDS |
| TCATCAACAGTCATTACATC+AGG | 0.509894 | 3_3:+66516401 | None:intergenic |
| GTGAGGATAGAGAAAATGTA+TGG | 0.519715 | 3_3:-66515234 | Msa0466000:three_prime_UTR |
| GTTGAGAAGGCAGCTTCAAA+CGG | 0.522134 | 3_3:-66516329 | Msa0466000:CDS |
| TCGTTCTCTTCACTCTTCAC+AGG | 0.522889 | 3_3:-66520552 | Msa0466000:intron |
| TCCATCCATATGAAGTCTGC+AGG | 0.525603 | 3_3:+66515396 | None:intergenic |
| TGCTAGCTCTGACACTATAG+TGG | 0.526126 | 3_3:-66519533 | Msa0466000:CDS |
| AACGACATGAGACGATGTGT+TGG | 0.528650 | 3_3:+66520570 | None:intergenic |
| TTGTGCTTATATGTGTAAGC+TGG | 0.529301 | 3_3:-66520812 | Msa0466000:five_prime_UTR |
| CACTTACAGTTGACTCGTGT+CGG | 0.530019 | 3_3:+66518727 | None:intergenic |
| GGAAATGACACGACTGCAGC+TGG | 0.530672 | 3_3:-66515751 | Msa0466000:CDS |
| CATACTCTTACTAGGGACAT+TGG | 0.534273 | 3_3:-66517170 | Msa0466000:intron |
| AGACGAGATTATGCGATTCA+GGG | 0.536705 | 3_3:+66517363 | None:intergenic |
| TTGGAGATCGCATCTCAACT+TGG | 0.536979 | 3_3:-66519718 | Msa0466000:CDS |
| GCAGATCCGCGTGACGACCT+TGG | 0.541256 | 3_3:-66516942 | Msa0466000:intron |
| AGTTGGTGATAGTAAATCTC+TGG | 0.543805 | 3_3:-66520085 | Msa0466000:CDS |
| GCGATATGTCTGTGTCATTG+AGG | 0.544430 | 3_3:-66516297 | Msa0466000:CDS |
| TTGATGATTTGTTGAATAAG+GGG | 0.549072 | 3_3:-66520056 | Msa0466000:CDS |
| ATAATGGAGGAAGCAGTTTG+TGG | 0.552391 | 3_3:+66520734 | None:intergenic |
| CACCTTGAATAACAAGCGGT+TGG | 0.553741 | 3_3:+66515782 | None:intergenic |
| TATTCAAGAGAGAGTTGAGA+AGG | 0.555589 | 3_3:-66516342 | Msa0466000:CDS |
| ACCTGCAGACTTCATATGGA+TGG | 0.556592 | 3_3:-66515397 | Msa0466000:three_prime_UTR |
| GCGTGACGACCTTGGTGGAA+TGG | 0.557142 | 3_3:-66516934 | Msa0466000:CDS |
| ATTCAGGATTTATTTCCTTG+AGG | 0.563190 | 3_3:-66515706 | Msa0466000:CDS |
| AGTGGTATTTAAACAAGTGG+TGG | 0.565038 | 3_3:-66519515 | Msa0466000:CDS |
| TTTATGAAATGGAATAATGG+AGG | 0.565368 | 3_3:+66520721 | None:intergenic |
| AGACATTAGAATGTGCTTGA+GGG | 0.566448 | 3_3:+66515341 | None:intergenic |
| TTCAGAACATATATCAATGT+AGG | 0.575977 | 3_3:-66515256 | Msa0466000:three_prime_UTR |
| GAACTTTGTCGGCTCAAGCA+TGG | 0.577642 | 3_3:-66520012 | Msa0466000:CDS |
| CTGATTCTAATGGGTTGTGG+AGG | 0.585102 | 3_3:-66520611 | Msa0466000:CDS |
| AACATATATCAATGTAGGTG+AGG | 0.586653 | 3_3:-66515251 | Msa0466000:three_prime_UTR |
| GATCCGCGTGACGACCTTGG+TGG | 0.590453 | 3_3:-66516939 | Msa0466000:CDS |
| CAGACATTAGAATGTGCTTG+AGG | 0.595856 | 3_3:+66515340 | None:intergenic |
| AGCTACTGCAGATTCCTATG+AGG | 0.599853 | 3_3:-66515167 | Msa0466000:three_prime_UTR |
| CCACAACCCATTAGAATCAG+AGG | 0.599933 | 3_3:+66520614 | None:intergenic |
| GACATTAGAATGTGCTTGAG+GGG | 0.601029 | 3_3:+66515342 | None:intergenic |
| TATAGTGGTATTTAAACAAG+TGG | 0.603886 | 3_3:-66519518 | Msa0466000:CDS |
| TCTGTGTCATTGAGGGCCCA+AGG | 0.607852 | 3_3:-66516289 | Msa0466000:intron |
| AGTCTGGGGTACACTGAACC+AGG | 0.614299 | 3_3:-66517085 | Msa0466000:intron |
| AGCTTACACATATAAGCACA+AGG | 0.624158 | 3_3:+66520814 | None:intergenic |
| GCTCTAACAACTTGGCTCAG+TGG | 0.629836 | 3_3:+66517115 | None:intergenic |
| TACTCTTACTAGGGACATTG+GGG | 0.630998 | 3_3:-66517168 | Msa0466000:intron |
| GCTAGCAGTGCAATCGACAA+AGG | 0.639455 | 3_3:+66519549 | None:intergenic |
| AAAGCCTCTTACATCTACAA+TGG | 0.649979 | 3_3:-66519461 | Msa0466000:intron |
| GTAATGAGTGAGGTTGAAGA+CGG | 0.653533 | 3_3:-66517142 | Msa0466000:CDS |
| TGGTGATAGTAAATCTCTGG+TGG | 0.664687 | 3_3:-66520082 | Msa0466000:CDS |
| TGGTGTCCTTGCTGATATCG+TGG | 0.665644 | 3_3:-66515731 | Msa0466000:CDS |
| GACAGTTGGAAGTATACACT+CGG | 0.666254 | 3_3:-66515816 | Msa0466000:intron |
| CCAGCACCTTGAATAACAAG+CGG | 0.667197 | 3_3:+66515778 | None:intergenic |
| ATGAGACGATGTGTTGGAGA+AGG | 0.674742 | 3_3:+66520576 | None:intergenic |
| CTTTGTCGGCTCAAGCATGG+TGG | 0.682934 | 3_3:-66520009 | Msa0466000:CDS |
| TTAGAGCTGCTAAAAGTCTG+GGG | 0.687412 | 3_3:-66517099 | Msa0466000:CDS |
| GAATATCCACGATATCAGCA+AGG | 0.690515 | 3_3:+66515725 | None:intergenic |
| GCTTGTATCCCAAAGAAATG+GGG | 0.691217 | 3_3:-66516424 | Msa0466000:CDS |
| TTTGTGCATCCGGAATCGGA+AGG | 0.691255 | 3_3:-66519748 | Msa0466000:CDS |
| GACTCGTGTCGGATACGACG+TGG | 0.702791 | 3_3:+66518738 | None:intergenic |
| ATTCCACCAAGGTCGTCACG+CGG | 0.703419 | 3_3:+66516936 | None:intergenic |
| ATTGGGGTACGTAATGAGTG+AGG | 0.705523 | 3_3:-66517152 | Msa0466000:CDS |
| TAGCAACATCCATTCCACCA+AGG | 0.709532 | 3_3:+66516925 | None:intergenic |
| GCTTACACATATAAGCACAA+GGG | 0.722316 | 3_3:+66520815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATGAAACTTTATTTTA+GGG | + | chr3_3:66517129-66517148 | None:intergenic | 10.0% |
| !!! | TTATAATGAAACTTTATTTT+AGG | + | chr3_3:66517130-66517149 | None:intergenic | 10.0% |
| !!! | AAAATTTACTTTTAAATTTG+TGG | - | chr3_3:66519030-66519049 | Msa0466000:intron | 10.0% |
| !!! | TTTTTGTTAAAATTTTGATT+TGG | - | chr3_3:66520425-66520444 | Msa0466000:intron | 10.0% |
| !!! | ATTTTATGGATTTTATGAAA+TGG | + | chr3_3:66515312-66515331 | None:intergenic | 15.0% |
| !! | GTGAAATATTAAATTAAAGT+TGG | + | chr3_3:66515342-66515361 | None:intergenic | 15.0% |
| !! | TTAATATTTCACAAAAGAAA+AGG | - | chr3_3:66515350-66515369 | Msa0466000:three_prime_UTR | 15.0% |
| !!! | TTTTGTTAGTTTTTTCATTA+TGG | - | chr3_3:66515746-66515765 | Msa0466000:CDS | 15.0% |
| !!! | TTGAATTTTGATTGTTATTT+TGG | - | chr3_3:66515881-66515900 | Msa0466000:intron | 15.0% |
| !! | TTTCATAATAATTGTTGAAA+TGG | - | chr3_3:66516598-66516617 | Msa0466000:intron | 15.0% |
| !! | TTCATAATAATTGTTGAAAT+GGG | - | chr3_3:66516599-66516618 | Msa0466000:intron | 15.0% |
| !! | TGATTAAAGATTTATTAACA+AGG | - | chr3_3:66517336-66517355 | Msa0466000:CDS | 15.0% |
| !!! | AGTAAGAATTTTCAATAAAA+AGG | - | chr3_3:66517410-66517429 | Msa0466000:intron | 15.0% |
| !! | TAAAATCAAAATCAGAAAAA+AGG | - | chr3_3:66517783-66517802 | Msa0466000:intron | 15.0% |
| !! | AAAATCAAAATCAGAAAAAA+GGG | - | chr3_3:66517784-66517803 | Msa0466000:intron | 15.0% |
| !! | TTAAAATAGAACTCATATAT+TGG | + | chr3_3:66517812-66517831 | None:intergenic | 15.0% |
| !!! | TATTATTTTTTTAACAGAAG+TGG | + | chr3_3:66518278-66518297 | None:intergenic | 15.0% |
| !!! | ACAAAATTTATTACTTTTCT+TGG | - | chr3_3:66518451-66518470 | Msa0466000:intron | 15.0% |
| !!! | ATGTATAAATAACTTTAAAG+CGG | - | chr3_3:66518481-66518500 | Msa0466000:intron | 15.0% |
| !! | TTATCAATTGTAGTTTAAAA+TGG | - | chr3_3:66519354-66519373 | Msa0466000:intron | 15.0% |
| !! | GAAAAAATACGATAAATAAA+GGG | + | chr3_3:66519528-66519547 | None:intergenic | 15.0% |
| !! | GAAGTTATAATTGATATAAA+AGG | + | chr3_3:66519912-66519931 | None:intergenic | 15.0% |
| !!! | TTATTTTATTTTCTCGTTTT+TGG | - | chr3_3:66520022-66520041 | Msa0466000:CDS | 15.0% |
| !! | GTGAATTTAAAGAAAATAAA+AGG | - | chr3_3:66520352-66520371 | Msa0466000:intron | 15.0% |
| !!! | ATTATTATTTTTAAGTTGGT+TGG | - | chr3_3:66520732-66520751 | Msa0466000:five_prime_UTR | 15.0% |
| !!! | GATTTTATGAAATGGAATAA+TGG | + | chr3_3:66515304-66515323 | None:intergenic | 20.0% |
| !!! | AAGTTGGAAATTGAATTTTA+TGG | + | chr3_3:66515326-66515345 | None:intergenic | 20.0% |
| !!! | ATTTTGATTGTTATTTTGGT+TGG | - | chr3_3:66515885-66515904 | Msa0466000:intron | 20.0% |
| !! | ACTATTTGATTGTAATTGAA+AGG | - | chr3_3:66516235-66516254 | Msa0466000:intron | 20.0% |
| !!! | ATATCTGAAATTTTCATTGT+AGG | - | chr3_3:66516442-66516461 | Msa0466000:intron | 20.0% |
| !! | TCCTTAAACTTTATAATGTA+TGG | - | chr3_3:66516795-66516814 | Msa0466000:intron | 20.0% |
| !! | TCCATACATTATAAAGTTTA+AGG | + | chr3_3:66516799-66516818 | None:intergenic | 20.0% |
| !! | TATATCAACAGAAAATGAAA+TGG | + | chr3_3:66516833-66516852 | None:intergenic | 20.0% |
| !!! | ATATCATGTTTTTTAAGCTT+CGG | - | chr3_3:66516874-66516893 | Msa0466000:intron | 20.0% |
| !! | ATTCTATCAAGTAAAAGATA+AGG | - | chr3_3:66517152-66517171 | Msa0466000:CDS | 20.0% |
| !! | ATAAATCTTTAATCATGTTG+AGG | + | chr3_3:66517331-66517350 | None:intergenic | 20.0% |
| !! | TCTATGCAATAAAAACATAA+GGG | + | chr3_3:66518359-66518378 | None:intergenic | 20.0% |
| !! | TAAATAGTTACTGGTATTAT+TGG | - | chr3_3:66518401-66518420 | Msa0466000:intron | 20.0% |
| !! | TTTCCTATCAAAATCTAATT+TGG | - | chr3_3:66518536-66518555 | Msa0466000:intron | 20.0% |
| !!! | TTTGAAATTGCATTATTCAA+TGG | - | chr3_3:66518972-66518991 | Msa0466000:intron | 20.0% |
| !! | TTGAAATTGCATTATTCAAT+GGG | - | chr3_3:66518973-66518992 | Msa0466000:intron | 20.0% |
| !!! | AATACAAACTTTCTGTTTTT+TGG | - | chr3_3:66519388-66519407 | Msa0466000:intron | 20.0% |
| !!! | ATACAAACTTTCTGTTTTTT+GGG | - | chr3_3:66519389-66519408 | Msa0466000:intron | 20.0% |
| !! | GGAAAAAATACGATAAATAA+AGG | + | chr3_3:66519529-66519548 | None:intergenic | 20.0% |
| !! | AAAATGACTAACATAACATA+GGG | + | chr3_3:66519550-66519569 | None:intergenic | 20.0% |
| !! | TAAAATGACTAACATAACAT+AGG | + | chr3_3:66519551-66519570 | None:intergenic | 20.0% |
| !!! | GTTATGTTAGTCATTTTATA+TGG | - | chr3_3:66519553-66519572 | Msa0466000:CDS | 20.0% |
| !! | AAATCAACATTGAAATTGAT+AGG | + | chr3_3:66520459-66520478 | None:intergenic | 20.0% |
| !! | TTATAATATAATTGCGTTGA+TGG | - | chr3_3:66520510-66520529 | Msa0466000:intron | 20.0% |
| ! | TTTATGAAATGGAATAATGG+AGG | + | chr3_3:66515301-66515320 | None:intergenic | 25.0% |
| ! | TTTGATACTAGAAGACAAAT+GGG | + | chr3_3:66515585-66515604 | None:intergenic | 25.0% |
| !! | TTTTGATACTAGAAGACAAA+TGG | + | chr3_3:66515586-66515605 | None:intergenic | 25.0% |
| ! | TTTGATACTAAAACGCAAAT+GGG | + | chr3_3:66515656-66515675 | None:intergenic | 25.0% |
| !! | TTTTGATACTAAAACGCAAA+TGG | + | chr3_3:66515657-66515676 | None:intergenic | 25.0% |
| !! | TCAATAGCTAGATGATTTTA+AGG | + | chr3_3:66515798-66515817 | None:intergenic | 25.0% |
| !! | TAATCATTTTCTGACATTGA+TGG | - | chr3_3:66515831-66515850 | Msa0466000:intron | 25.0% |
| !!! | TTCAAAAGCACTCAATTTTA+TGG | + | chr3_3:66515866-66515885 | None:intergenic | 25.0% |
| !!! | GTTGATGATTTGTTGAATAA+GGG | - | chr3_3:66515962-66515981 | Msa0466000:intron | 25.0% |
| !!! | TTGATGATTTGTTGAATAAG+GGG | - | chr3_3:66515963-66515982 | Msa0466000:intron | 25.0% |
| !!! | GTTTTTTGTTAGAACTTTGT+CGG | - | chr3_3:66515996-66516015 | Msa0466000:intron | 25.0% |
| !! | TGAAATTTTCATTGTAGGTT+TGG | - | chr3_3:66516447-66516466 | Msa0466000:intron | 25.0% |
| ! | TATAGTGGTATTTAAACAAG+TGG | - | chr3_3:66516501-66516520 | Msa0466000:intron | 25.0% |
| ! | ATAATAATTGTTGAAATGGG+AGG | - | chr3_3:66516602-66516621 | Msa0466000:intron | 25.0% |
| ! | AAACATGACCATAAATTAGA+GGG | + | chr3_3:66516750-66516769 | None:intergenic | 25.0% |
| ! | TAAACATGACCATAAATTAG+AGG | + | chr3_3:66516751-66516770 | None:intergenic | 25.0% |
| ! | ATTTATGGTCATGTTTAGTT+TGG | - | chr3_3:66516754-66516773 | Msa0466000:intron | 25.0% |
| !! | ATAAACTGCAAATTTGTTTC+TGG | - | chr3_3:66517436-66517455 | Msa0466000:intron | 25.0% |
| ! | TCTGTATTTAACTGTAATCT+CGG | - | chr3_3:66517481-66517500 | Msa0466000:intron | 25.0% |
| ! | AATTCTTCCATTAAAGAACT+TGG | - | chr3_3:66517658-66517677 | Msa0466000:intron | 25.0% |
| ! | CATAATACCAAGTTCTTTAA+TGG | + | chr3_3:66517668-66517687 | None:intergenic | 25.0% |
| !! | GAAGGAAATTTTTGAATTTG+AGG | - | chr3_3:66517709-66517728 | Msa0466000:intron | 25.0% |
| ! | CTGATGCATATATACAAATA+TGG | - | chr3_3:66517755-66517774 | Msa0466000:intron | 25.0% |
| ! | AAAATCTAAATGCATGTTCT+CGG | - | chr3_3:66517941-66517960 | Msa0466000:intron | 25.0% |
| ! | CATTATATCTGTTTACTTTC+TGG | - | chr3_3:66518024-66518043 | Msa0466000:intron | 25.0% |
| ! | CTCTATGCAATAAAAACATA+AGG | + | chr3_3:66518360-66518379 | None:intergenic | 25.0% |
| !!! | TATGTTTTTATTGCATAGAG+AGG | - | chr3_3:66518360-66518379 | Msa0466000:intron | 25.0% |
| ! | ATGAGATGATAAATAGTTAC+TGG | - | chr3_3:66518392-66518411 | Msa0466000:intron | 25.0% |
| !!! | AAGCCAAATTAGATTTTGAT+AGG | + | chr3_3:66518542-66518561 | None:intergenic | 25.0% |
| !! | AAAATCTAATTTGGCTTCAT+GGG | - | chr3_3:66518545-66518564 | Msa0466000:intron | 25.0% |
| !! | ATTGAAAATCATGGATTTTG+AGG | - | chr3_3:66518571-66518590 | Msa0466000:intron | 25.0% |
| !!! | TCTGGTTGTGATATTTTTAA+AGG | - | chr3_3:66518606-66518625 | Msa0466000:intron | 25.0% |
| !!! | GTTGTGATATTTTTAAAGGT+AGG | - | chr3_3:66518610-66518629 | Msa0466000:intron | 25.0% |
| !! | AGGTATTGTTATGTTGATAT+TGG | - | chr3_3:66518815-66518834 | Msa0466000:intron | 25.0% |
| ! | AAATACGATAAATAAAGGGA+AGG | + | chr3_3:66519524-66519543 | None:intergenic | 25.0% |
| ! | AATTGAACACAGAATATGAA+GGG | + | chr3_3:66519770-66519789 | None:intergenic | 25.0% |
| ! | GATTGAATTGAACATGAAAA+AGG | + | chr3_3:66519833-66519852 | None:intergenic | 25.0% |
| ! | TTCAATCTTTGCATATGATT+TGG | - | chr3_3:66519846-66519865 | Msa0466000:intron | 25.0% |
| !!! | GGCGTTAAGTATTTTTAATT+AGG | - | chr3_3:66520043-66520062 | Msa0466000:CDS | 25.0% |
| ! | ATTTGCATCAACATACAAAA+TGG | + | chr3_3:66520183-66520202 | None:intergenic | 25.0% |
| !!! | TTTGACTTGAAATGTATTCA+GGG | + | chr3_3:66520575-66520594 | None:intergenic | 25.0% |
| !!! | TTTTGACTTGAAATGTATTC+AGG | + | chr3_3:66520576-66520595 | None:intergenic | 25.0% |
| ! | TTCAGAACATATATCAATGT+AGG | - | chr3_3:66520763-66520782 | Msa0466000:five_prime_UTR | 25.0% |
| TGTGGAAATGTTAGTAGTAA+GGG | + | chr3_3:66515270-66515289 | None:intergenic | 30.0% | |
| TTGTGGAAATGTTAGTAGTA+AGG | + | chr3_3:66515271-66515290 | None:intergenic | 30.0% | |
| ACTATTCCTCTGATTCTAAT+GGG | - | chr3_3:66515399-66515418 | Msa0466000:three_prime_UTR | 30.0% | |
| AAAAGATCTGCTAGTCAAAT+GGG | + | chr3_3:66515727-66515746 | None:intergenic | 30.0% | |
| AAAAAGATCTGCTAGTCAAA+TGG | + | chr3_3:66515728-66515747 | None:intergenic | 30.0% | |
| !! | CGTTGATGATTTGTTGAATA+AGG | - | chr3_3:66515961-66515980 | Msa0466000:intron | 30.0% |
| ! | TTATCAAAACTTGGTGATCT+TGG | - | chr3_3:66516040-66516059 | Msa0466000:intron | 30.0% |
| !! | ACACAGTTTTGCTCTTATTT+AGG | + | chr3_3:66516399-66516418 | None:intergenic | 30.0% |
| GTGTGTATGAAAAATTGCTT+AGG | - | chr3_3:66516415-66516434 | Msa0466000:CDS | 30.0% | |
| !! | ATTTAAACAAGTGGTGGATT+TGG | - | chr3_3:66516510-66516529 | Msa0466000:intron | 30.0% |
| !! | TTTAAACAAGTGGTGGATTT+GGG | - | chr3_3:66516511-66516530 | Msa0466000:intron | 30.0% |
| AATTTACCCCCTCTAATTTA+TGG | - | chr3_3:66516739-66516758 | Msa0466000:intron | 30.0% | |
| AACATGACCATAAATTAGAG+GGG | + | chr3_3:66516749-66516768 | None:intergenic | 30.0% | |
| ! | TTTTCAGCGAATTTCAAGAT+TGG | + | chr3_3:66516941-66516960 | None:intergenic | 30.0% |
| TGTGCATGTCAAAAAGTTTA+TGG | - | chr3_3:66517032-66517051 | Msa0466000:intron | 30.0% | |
| ACAATAGAACAAAGTAACGT+GGG | + | chr3_3:66517189-66517208 | None:intergenic | 30.0% | |
| AACAATAGAACAAAGTAACG+TGG | + | chr3_3:66517190-66517209 | None:intergenic | 30.0% | |
| AACAATAACTCTCTCTTACA+TGG | - | chr3_3:66517226-66517245 | Msa0466000:intron | 30.0% | |
| GACTGTATTAAAAGAAAGTG+TGG | - | chr3_3:66517375-66517394 | Msa0466000:CDS | 30.0% | |
| !! | GTTTCTGGAATTTCTTTGAT+TGG | - | chr3_3:66517451-66517470 | Msa0466000:intron | 30.0% |
| GTGTTGTATGGATCTATAAT+CGG | - | chr3_3:66517538-66517557 | Msa0466000:intron | 30.0% | |
| ATTTCATTCCTTGTCTACTA+AGG | + | chr3_3:66517587-66517606 | None:intergenic | 30.0% | |
| TAGACAAGGAATGAAATCTA+GGG | - | chr3_3:66517590-66517609 | Msa0466000:intron | 30.0% | |
| GTCATCTTCATCTAGAAATA+AGG | - | chr3_3:66517687-66517706 | Msa0466000:intron | 30.0% | |
| TCTTCATCTAGAAATAAGGA+AGG | - | chr3_3:66517691-66517710 | Msa0466000:intron | 30.0% | |
| GTTTAAATCAACTCTTTCCT+CGG | - | chr3_3:66518071-66518090 | Msa0466000:intron | 30.0% | |
| AGTGAAATCTAATACTTCCT+CGG | - | chr3_3:66518213-66518232 | Msa0466000:intron | 30.0% | |
| ! | CAAAATCTAATTTGGCTTCA+TGG | - | chr3_3:66518544-66518563 | Msa0466000:intron | 30.0% |
| ! | AAATCTAATTTGGCTTCATG+GGG | - | chr3_3:66518546-66518565 | Msa0466000:intron | 30.0% |
| !! | ATATTTTTAAAGGTAGGTGC+TGG | - | chr3_3:66518616-66518635 | Msa0466000:intron | 30.0% |
| !! | TATTTTTAAAGGTAGGTGCT+GGG | - | chr3_3:66518617-66518636 | Msa0466000:intron | 30.0% |
| CTTGATCACATATTCATTGT+TGG | - | chr3_3:66518772-66518791 | Msa0466000:intron | 30.0% | |
| TTATTCTGCATACTCTTACT+AGG | - | chr3_3:66518841-66518860 | Msa0466000:intron | 30.0% | |
| TATTCTGCATACTCTTACTA+GGG | - | chr3_3:66518842-66518861 | Msa0466000:intron | 30.0% | |
| ATTGTGTAGCAATTAGCAAA+TGG | + | chr3_3:66519001-66519020 | None:intergenic | 30.0% | |
| !! | AACGCATAAATTTGCTAACA+CGG | + | chr3_3:66519208-66519227 | None:intergenic | 30.0% |
| TGTTAGCAAATTTATGCGTT+GGG | - | chr3_3:66519208-66519227 | Msa0466000:intron | 30.0% | |
| !! | CAGTTTCGAAGTTTTGATAT+TGG | - | chr3_3:66519254-66519273 | Msa0466000:intron | 30.0% |
| TAGTTGACCATTTCTTATCA+CGG | - | chr3_3:66519292-66519311 | Msa0466000:intron | 30.0% | |
| ! | TTTGGGCTAATATTTGAAAC+AGG | - | chr3_3:66519406-66519425 | Msa0466000:intron | 30.0% |
| GATTAATATGGATAGCATTC+AGG | - | chr3_3:66519460-66519479 | Msa0466000:intron | 30.0% | |
| GAATTGAACACAGAATATGA+AGG | + | chr3_3:66519771-66519790 | None:intergenic | 30.0% | |
| !! | ATAACTTCTCTCCTTTTTCA+AGG | - | chr3_3:66519924-66519943 | Msa0466000:intron | 30.0% |
| ! | ATTAAGAGGAAGTGATAATG+TGG | - | chr3_3:66519994-66520013 | Msa0466000:CDS | 30.0% |
| ! | AGGATTTTTGTCCATTTTAG+AGG | - | chr3_3:66520063-66520082 | Msa0466000:CDS | 30.0% |
| ATTCAGGATTTATTTCCTTG+AGG | - | chr3_3:66520313-66520332 | Msa0466000:intron | 30.0% | |
| TTCAGGATTTATTTCCTTGA+GGG | - | chr3_3:66520314-66520333 | Msa0466000:intron | 30.0% | |
| ! | AAATAAAAGGTACAGCTTCT+TGG | - | chr3_3:66520365-66520384 | Msa0466000:intron | 30.0% |
| !! | AAGTCAAAATCTCAAGTTGA+TGG | - | chr3_3:66520587-66520606 | Msa0466000:CDS | 30.0% |
| !!! | ATTCTAATGTCTGTTTTTGC+TGG | - | chr3_3:66520689-66520708 | Msa0466000:five_prime_UTR | 30.0% |
| AACATATATCAATGTAGGTG+AGG | - | chr3_3:66520768-66520787 | Msa0466000:five_prime_UTR | 30.0% | |
| ! | ATGTATGGTTTATGACTTGT+AGG | - | chr3_3:66520800-66520819 | Msa0466000:five_prime_UTR | 30.0% |
| GCTTACACATATAAGCACAA+GGG | + | chr3_3:66515207-66515226 | None:intergenic | 35.0% | |
| AGCTTACACATATAAGCACA+AGG | + | chr3_3:66515208-66515227 | None:intergenic | 35.0% | |
| TTGTGCTTATATGTGTAAGC+TGG | - | chr3_3:66515207-66515226 | Msa0466000:three_prime_UTR | 35.0% | |
| GACTATTCCTCTGATTCTAA+TGG | - | chr3_3:66515398-66515417 | Msa0466000:three_prime_UTR | 35.0% | |
| !!! | TGATTGTTATTTTGGTTGGC+AGG | - | chr3_3:66515889-66515908 | Msa0466000:intron | 35.0% |
| !!! | GATTGTTATTTTGGTTGGCA+GGG | - | chr3_3:66515890-66515909 | Msa0466000:intron | 35.0% |
| !! | AGTTGGTGATAGTAAATCTC+TGG | - | chr3_3:66515934-66515953 | Msa0466000:intron | 35.0% |
| ATGTCAAGTATTTGTGCATC+CGG | - | chr3_3:66516261-66516280 | Msa0466000:intron | 35.0% | |
| AAAATCTTTCCTTCCGATTC+CGG | + | chr3_3:66516283-66516302 | None:intergenic | 35.0% | |
| TCTCAACTTGGTAAAAAGAC+AGG | - | chr3_3:66516313-66516332 | Msa0466000:CDS | 35.0% | |
| TGAAACCAATCACATTAAGC+AGG | + | chr3_3:66516368-66516387 | None:intergenic | 35.0% | |
| AGTGGTATTTAAACAAGTGG+TGG | - | chr3_3:66516504-66516523 | Msa0466000:intron | 35.0% | |
| !! | TTTGGGTTGTTGTGTTGTTA+TGG | - | chr3_3:66516528-66516547 | Msa0466000:intron | 35.0% |
| AAAGCCTCTTACATCTACAA+TGG | - | chr3_3:66516558-66516577 | Msa0466000:intron | 35.0% | |
| CTTACCATTGTAGATGTAAG+AGG | + | chr3_3:66516565-66516584 | None:intergenic | 35.0% | |
| AATTGTTGAAATGGGAGGTT+AGG | - | chr3_3:66516607-66516626 | Msa0466000:intron | 35.0% | |
| ACATGACCATAAATTAGAGG+GGG | + | chr3_3:66516748-66516767 | None:intergenic | 35.0% | |
| !! | TTTTTAAGCTTCGGCATCAA+TGG | - | chr3_3:66516883-66516902 | Msa0466000:intron | 35.0% |
| TCATATGATCCTTCTTGAAG+TGG | - | chr3_3:66516909-66516928 | Msa0466000:intron | 35.0% | |
| TATGGCATTGCTTGTTTCAA+AGG | - | chr3_3:66517050-66517069 | Msa0466000:intron | 35.0% | |
| AGAGAGTTATTGTTTAGACG+AGG | + | chr3_3:66517220-66517239 | None:intergenic | 35.0% | |
| !! | AACAAGGTATTGCAAAGAGA+TGG | - | chr3_3:66517352-66517371 | Msa0466000:CDS | 35.0% |
| !! | ACAAGGTATTGCAAAGAGAT+GGG | - | chr3_3:66517353-66517372 | Msa0466000:CDS | 35.0% |
| ! | AACTTATACAGGCTCTAGTT+TGG | + | chr3_3:66517512-66517531 | None:intergenic | 35.0% |
| AACACATCCAGAACTTATAC+AGG | + | chr3_3:66517523-66517542 | None:intergenic | 35.0% | |
| !! | TAAGTTCTGGATGTGTTGTA+TGG | - | chr3_3:66517526-66517545 | Msa0466000:intron | 35.0% |
| AATTCAGACCTTAGTAGACA+AGG | - | chr3_3:66517576-66517595 | Msa0466000:intron | 35.0% | |
| GTAGACAAGGAATGAAATCT+AGG | - | chr3_3:66517589-66517608 | Msa0466000:intron | 35.0% | |
| ! | TGTATAATCAACTGATTCCG+AGG | + | chr3_3:66518091-66518110 | None:intergenic | 35.0% |
| TTCCTTAGACCATCTACAAT+GGG | - | chr3_3:66518236-66518255 | Msa0466000:intron | 35.0% | |
| TATTGCATAGAGAGGAATGA+TGG | - | chr3_3:66518368-66518387 | Msa0466000:intron | 35.0% | |
| !! | CTTTAAAGCGGCAACTAAAA+AGG | - | chr3_3:66518493-66518512 | Msa0466000:intron | 35.0% |
| CATGGGGATATTGAAAATCA+TGG | - | chr3_3:66518562-66518581 | Msa0466000:intron | 35.0% | |
| GATCCAGTTAATCGCATTAT+TGG | - | chr3_3:66518682-66518701 | Msa0466000:intron | 35.0% | |
| CTTCCAATAATGCGATTAAC+TGG | + | chr3_3:66518688-66518707 | None:intergenic | 35.0% | |
| AACAATACCTTACACTTACG+TGG | + | chr3_3:66518805-66518824 | None:intergenic | 35.0% | |
| ATACTCTTACTAGGGACATT+GGG | - | chr3_3:66518850-66518869 | Msa0466000:intron | 35.0% | |
| !! | TTTTAGCAGCTCTAACAACT+TGG | + | chr3_3:66518915-66518934 | None:intergenic | 35.0% |
| AAAAGTAGCTGTCAATAACC+TGG | + | chr3_3:66518955-66518974 | None:intergenic | 35.0% | |
| ! | GATACAGATTTGTGAGCTTT+TGG | + | chr3_3:66519179-66519198 | None:intergenic | 35.0% |
| AGCTCACAAATCTGTATCAT+TGG | - | chr3_3:66519181-66519200 | Msa0466000:intron | 35.0% | |
| !! | ACGCATAAATTTGCTAACAC+GGG | + | chr3_3:66519207-66519226 | None:intergenic | 35.0% |
| GTGTTAGCAAATTTATGCGT+TGG | - | chr3_3:66519207-66519226 | Msa0466000:intron | 35.0% | |
| AGTTGACCATTTCTTATCAC+GGG | - | chr3_3:66519293-66519312 | Msa0466000:intron | 35.0% | |
| ! | TTTGAAACAGGCTTTGATTC+TGG | - | chr3_3:66519418-66519437 | Msa0466000:intron | 35.0% |
| ACTTGGTTGTCGGATTAATA+TGG | - | chr3_3:66519448-66519467 | Msa0466000:intron | 35.0% | |
| ACGATAAATAAAGGGAAGGT+AGG | + | chr3_3:66519520-66519539 | None:intergenic | 35.0% | |
| AAGCTTGTATCCCAAAGAAA+TGG | - | chr3_3:66519593-66519612 | Msa0466000:intron | 35.0% | |
| AGCTTGTATCCCAAAGAAAT+GGG | - | chr3_3:66519594-66519613 | Msa0466000:intron | 35.0% | |
| TCATCAACAGTCATTACATC+AGG | + | chr3_3:66519621-66519640 | None:intergenic | 35.0% | |
| TATTCAAGAGAGAGTTGAGA+AGG | - | chr3_3:66519677-66519696 | Msa0466000:intron | 35.0% | |
| GGAGGAAACAAATATACCTT+GGG | + | chr3_3:66519749-66519768 | None:intergenic | 35.0% | |
| GAAAAAGGAGAAAACCATGT+GGG | + | chr3_3:66519818-66519837 | None:intergenic | 35.0% | |
| TGAAAAAGGAGAAAACCATG+TGG | + | chr3_3:66519819-66519838 | None:intergenic | 35.0% | |
| CTTCCTAAAGCAGAATTCTT+CGG | + | chr3_3:66519974-66519993 | None:intergenic | 35.0% | |
| !! | TCTGCTTTAGGAAGATTAAG+AGG | - | chr3_3:66519980-66519999 | Msa0466000:CDS | 35.0% |
| ! | GAAAGAAACCATTTTGTGCA+AGG | + | chr3_3:66520094-66520113 | None:intergenic | 35.0% |
| ATGTTGATGCAAATGACAGT+TGG | - | chr3_3:66520189-66520208 | Msa0466000:intron | 35.0% | |
| GAATAAAAACGTTTCCCTCA+AGG | + | chr3_3:66520331-66520350 | None:intergenic | 35.0% | |
| !! | ATTGCGTTGATGGTTTATAG+CGG | - | chr3_3:66520520-66520539 | Msa0466000:intron | 35.0% |
| AGACATTAGAATGTGCTTGA+GGG | + | chr3_3:66520681-66520700 | None:intergenic | 35.0% | |
| GTGAGGATAGAGAAAATGTA+TGG | - | chr3_3:66520785-66520804 | Msa0466000:five_prime_UTR | 35.0% | |
| ! | TTCAAGGCATTTCAAGGATA+TGG | - | chr3_3:66520878-66520897 | Msa0466000:five_prime_UTR | 35.0% |
| ! | ATAATGGAGGAAGCAGTTTG+TGG | + | chr3_3:66515288-66515307 | None:intergenic | 40.0% |
| TGGTGATAGTAAATCTCTGG+TGG | - | chr3_3:66515937-66515956 | Msa0466000:intron | 40.0% | |
| GGCGACTCTTTATCAAAACT+TGG | - | chr3_3:66516031-66516050 | Msa0466000:intron | 40.0% | |
| AGTATTTGTGCATCCGGAAT+CGG | - | chr3_3:66516267-66516286 | Msa0466000:intron | 40.0% | |
| ! | GGAATCGGAAGGAAAGATTT+TGG | - | chr3_3:66516282-66516301 | Msa0466000:intron | 40.0% |
| TGGTAAAAAGACAGGTGTGT+TGG | - | chr3_3:66516321-66516340 | Msa0466000:CDS | 40.0% | |
| GGTAAAAAGACAGGTGTGTT+GGG | - | chr3_3:66516322-66516341 | Msa0466000:CDS | 40.0% | |
| TAGAATGTATCAAGTGCCAC+TGG | + | chr3_3:66516699-66516718 | None:intergenic | 40.0% | |
| GGCACTTGATACATTCTAGA+AGG | - | chr3_3:66516701-66516720 | Msa0466000:intron | 40.0% | |
| TGGAAAAGTCCACTTCAAGA+AGG | + | chr3_3:66516921-66516940 | None:intergenic | 40.0% | |
| AATCAACCCCCTTTAACCTA+GGG | + | chr3_3:66517098-66517117 | None:intergenic | 40.0% | |
| TAATCAACCCCCTTTAACCT+AGG | + | chr3_3:66517099-66517118 | None:intergenic | 40.0% | |
| AGTTATTGTTTAGACGAGGC+AGG | + | chr3_3:66517216-66517235 | None:intergenic | 40.0% | |
| AACTCTCTCTTACATGGAAC+AGG | - | chr3_3:66517232-66517251 | Msa0466000:intron | 40.0% | |
| ACTAGAGCCTGTATAAGTTC+TGG | - | chr3_3:66517513-66517532 | Msa0466000:intron | 40.0% | |
| GTTCCTTAGACCATCTACAA+TGG | - | chr3_3:66518235-66518254 | Msa0466000:intron | 40.0% | |
| TCCTTAGACCATCTACAATG+GGG | - | chr3_3:66518237-66518256 | Msa0466000:intron | 40.0% | |
| AACAGAAGTGGCAAGTAACT+AGG | + | chr3_3:66518266-66518285 | None:intergenic | 40.0% | |
| CGGCAACTAAAAAGGAATTG+AGG | - | chr3_3:66518501-66518520 | Msa0466000:intron | 40.0% | |
| CGATTCAGGGATGATATAAC+AGG | + | chr3_3:66518646-66518665 | None:intergenic | 40.0% | |
| AGACGAGATTATGCGATTCA+GGG | + | chr3_3:66518659-66518678 | None:intergenic | 40.0% | |
| CGCATTATTGGAAGTTTGAG+TGG | - | chr3_3:66518694-66518713 | Msa0466000:intron | 40.0% | |
| CATACTCTTACTAGGGACAT+TGG | - | chr3_3:66518849-66518868 | Msa0466000:intron | 40.0% | |
| TACTCTTACTAGGGACATTG+GGG | - | chr3_3:66518851-66518870 | Msa0466000:intron | 40.0% | |
| GTAATGAGTGAGGTTGAAGA+CGG | - | chr3_3:66518877-66518896 | Msa0466000:intron | 40.0% | |
| TGTTAGAGCTGCTAAAAGTC+TGG | - | chr3_3:66518918-66518937 | Msa0466000:intron | 40.0% | |
| GTTAGAGCTGCTAAAAGTCT+GGG | - | chr3_3:66518919-66518938 | Msa0466000:intron | 40.0% | |
| TTAGAGCTGCTAAAAGTCTG+GGG | - | chr3_3:66518920-66518939 | Msa0466000:intron | 40.0% | |
| TGGAATGGATGTTGCTAGAA+AGG | - | chr3_3:66519100-66519119 | Msa0466000:intron | 40.0% | |
| ! | TGTGAGCTTTTGGATAAAGC+AGG | + | chr3_3:66519169-66519188 | None:intergenic | 40.0% |
| GAATGACCCGTGATAAGAAA+TGG | + | chr3_3:66519302-66519321 | None:intergenic | 40.0% | |
| !! | TTGATTCTGGCTCGAATACT+TGG | - | chr3_3:66519431-66519450 | Msa0466000:intron | 40.0% |
| GCTTGTATCCCAAAGAAATG+GGG | - | chr3_3:66519595-66519614 | Msa0466000:intron | 40.0% | |
| !!! | GTTGATGACTTTTTGAGTCG+TGG | - | chr3_3:66519633-66519652 | Msa0466000:intron | 40.0% |
| ! | CGATATGTCTGTGTCATTGA+GGG | - | chr3_3:66519723-66519742 | Msa0466000:CDS | 40.0% |
| GGGAGGAAACAAATATACCT+TGG | + | chr3_3:66519750-66519769 | None:intergenic | 40.0% | |
| TGAACACAGAATATGAAGGG+AGG | + | chr3_3:66519767-66519786 | None:intergenic | 40.0% | |
| CCAACTTCACACCTTGAAAA+AGG | + | chr3_3:66519938-66519957 | None:intergenic | 40.0% | |
| !!! | CCTTTTTCAAGGTGTGAAGT+TGG | - | chr3_3:66519935-66519954 | Msa0466000:intron | 40.0% |
| CTTCCGAAGAATTCTGCTTT+AGG | - | chr3_3:66519968-66519987 | Msa0466000:intron | 40.0% | |
| ! | GACAGTTGGAAGTATACACT+CGG | - | chr3_3:66520203-66520222 | Msa0466000:intron | 40.0% |
| !! | AACCAACCGCTTGTTATTCA+AGG | - | chr3_3:66520235-66520254 | Msa0466000:intron | 40.0% |
| GAATATCCACGATATCAGCA+AGG | + | chr3_3:66520297-66520316 | None:intergenic | 40.0% | |
| TGCTGATATCGTGGATATTC+AGG | - | chr3_3:66520297-66520316 | Msa0466000:intron | 40.0% | |
| !! | TTGCGTTGATGGTTTATAGC+GGG | - | chr3_3:66520521-66520540 | Msa0466000:intron | 40.0% |
| GACATTAGAATGTGCTTGAG+GGG | + | chr3_3:66520680-66520699 | None:intergenic | 40.0% | |
| CAGACATTAGAATGTGCTTG+AGG | + | chr3_3:66520682-66520701 | None:intergenic | 40.0% | |
| ! | GATTCCTATGAGGCATTTCA+AGG | - | chr3_3:66520862-66520881 | Msa0466000:five_prime_UTR | 40.0% |
| AATGCCTTGAAATGCCTCAT+AGG | + | chr3_3:66520869-66520888 | None:intergenic | 40.0% | |
| ! | AGGCATTTCAAGGCATTTCA+AGG | - | chr3_3:66520872-66520891 | Msa0466000:five_prime_UTR | 40.0% |
| CCACAACCCATTAGAATCAG+AGG | + | chr3_3:66515408-66515427 | None:intergenic | 45.0% | |
| !! | CCTCTGATTCTAATGGGTTG+TGG | - | chr3_3:66515405-66515424 | Msa0466000:three_prime_UTR | 45.0% |
| !! | CTGATTCTAATGGGTTGTGG+AGG | - | chr3_3:66515408-66515427 | Msa0466000:three_prime_UTR | 45.0% |
| ATGAGACGATGTGTTGGAGA+AGG | + | chr3_3:66515446-66515465 | None:intergenic | 45.0% | |
| AACGACATGAGACGATGTGT+TGG | + | chr3_3:66515452-66515471 | None:intergenic | 45.0% | |
| TCGTTCTCTTCACTCTTCAC+AGG | - | chr3_3:66515467-66515486 | Msa0466000:intron | 45.0% | |
| TTGGAGATCGCATCTCAACT+TGG | - | chr3_3:66516301-66516320 | Msa0466000:CDS | 45.0% | |
| CAGCACCTGCTTAATGTGAT+TGG | - | chr3_3:66516360-66516379 | Msa0466000:CDS | 45.0% | |
| !! | TGCTAGCTCTGACACTATAG+TGG | - | chr3_3:66516486-66516505 | Msa0466000:intron | 45.0% |
| CGTTATCCTCTTGAAACCAG+TGG | - | chr3_3:66516680-66516699 | Msa0466000:intron | 45.0% | |
| TGCACAAGACCCTAGGTTAA+AGG | - | chr3_3:66517086-66517105 | Msa0466000:CDS | 45.0% | |
| GCACAAGACCCTAGGTTAAA+GGG | - | chr3_3:66517087-66517106 | Msa0466000:CDS | 45.0% | |
| CACAAGACCCTAGGTTAAAG+GGG | - | chr3_3:66517088-66517107 | Msa0466000:CDS | 45.0% | |
| ACAAGACCCTAGGTTAAAGG+GGG | - | chr3_3:66517089-66517108 | Msa0466000:CDS | 45.0% | |
| TCTCTCTTACATGGAACAGG+AGG | - | chr3_3:66517235-66517254 | Msa0466000:intron | 45.0% | |
| !! | CACTTACAGTTGACTCGTGT+CGG | + | chr3_3:66517295-66517314 | None:intergenic | 45.0% |
| CCTTAGACCATCTACAATGG+GGG | - | chr3_3:66518238-66518257 | Msa0466000:intron | 45.0% | |
| CTTAGACCATCTACAATGGG+GGG | - | chr3_3:66518239-66518258 | Msa0466000:intron | 45.0% | |
| ! | TTGAGGTGCTTTGACTGATC+TGG | - | chr3_3:66518588-66518607 | Msa0466000:intron | 45.0% |
| CAGACGAGATTATGCGATTC+AGG | + | chr3_3:66518660-66518679 | None:intergenic | 45.0% | |
| CTGAATCGCATAATCTCGTC+TGG | - | chr3_3:66518658-66518677 | Msa0466000:intron | 45.0% | |
| CAGTCTTCCACGTAAGTGTA+AGG | - | chr3_3:66518795-66518814 | Msa0466000:intron | 45.0% | |
| ATTGGGGTACGTAATGAGTG+AGG | - | chr3_3:66518867-66518886 | Msa0466000:intron | 45.0% | |
| TAGCAACATCCATTCCACCA+AGG | + | chr3_3:66519097-66519116 | None:intergenic | 45.0% | |
| ! | GGGTCATTCTGCACTACTTT+TGG | - | chr3_3:66519313-66519332 | Msa0466000:intron | 45.0% |
| TGGCTCGAATACTTGGTTGT+CGG | - | chr3_3:66519438-66519457 | Msa0466000:intron | 45.0% | |
| ACATCAGGCCCCATTTCTTT+GGG | + | chr3_3:66519606-66519625 | None:intergenic | 45.0% | |
| TACATCAGGCCCCATTTCTT+TGG | + | chr3_3:66519607-66519626 | None:intergenic | 45.0% | |
| GTTGAGAAGGCAGCTTCAAA+CGG | - | chr3_3:66519690-66519709 | Msa0466000:intron | 45.0% | |
| ! | GCGATATGTCTGTGTCATTG+AGG | - | chr3_3:66519722-66519741 | Msa0466000:CDS | 45.0% |
| AAAGGAGAAAACCATGTGGG+TGG | + | chr3_3:66519815-66519834 | None:intergenic | 45.0% | |
| ! | GCAAGGTCAAGCCTCTAAAA+TGG | + | chr3_3:66520077-66520096 | None:intergenic | 45.0% |
| AGGCTTGACCTTGCACAAAA+TGG | - | chr3_3:66520083-66520102 | Msa0466000:CDS | 45.0% | |
| CACCTTGAATAACAAGCGGT+TGG | + | chr3_3:66520240-66520259 | None:intergenic | 45.0% | |
| CCAGCACCTTGAATAACAAG+CGG | + | chr3_3:66520244-66520263 | None:intergenic | 45.0% | |
| AGCTTCTTGGTATCTTCTCC+TGG | - | chr3_3:66520378-66520397 | Msa0466000:intron | 45.0% | |
| AAGCACGTCAGCAATATTCC+AGG | + | chr3_3:66520399-66520418 | None:intergenic | 45.0% | |
| GCTTACCTGCAGACTTCATA+TGG | - | chr3_3:66520618-66520637 | Msa0466000:CDS | 45.0% | |
| ACCTGCAGACTTCATATGGA+TGG | - | chr3_3:66520622-66520641 | Msa0466000:CDS | 45.0% | |
| TCCATCCATATGAAGTCTGC+AGG | + | chr3_3:66520626-66520645 | None:intergenic | 45.0% | |
| AGCTACTGCAGATTCCTATG+AGG | - | chr3_3:66520852-66520871 | Msa0466000:five_prime_UTR | 45.0% | |
| !! | AATGATTAATTAAAAAATAA+TGG | + | chr3_3:66518008-66518027 | None:intergenic | 5.0% |
| !!! | ATAAATTTTGTTATTTTTTA+TGG | + | chr3_3:66518442-66518461 | None:intergenic | 5.0% |
| !!! | TATTATTATTATTTTTAAGT+TGG | - | chr3_3:66520728-66520747 | Msa0466000:five_prime_UTR | 5.0% |
| !!! | TTTTTCATTTAAATAAAAAA+AGG | - | chr3_3:66520828-66520847 | Msa0466000:five_prime_UTR | 5.0% |
| !! | CTAATGGGTTGTGGAGGAGT+TGG | - | chr3_3:66515414-66515433 | Msa0466000:three_prime_UTR | 50.0% |
| GGACTCTGCTTGAGAGTTGT+GGG | - | chr3_3:66515911-66515930 | Msa0466000:intron | 50.0% | |
| TGCTTGAGAGTTGTGGGAGT+TGG | - | chr3_3:66515917-66515936 | Msa0466000:intron | 50.0% | |
| !! | GAACTTTGTCGGCTCAAGCA+TGG | - | chr3_3:66516007-66516026 | Msa0466000:intron | 50.0% |
| TTTGTGCATCCGGAATCGGA+AGG | - | chr3_3:66516271-66516290 | Msa0466000:intron | 50.0% | |
| GCTAGCAGTGCAATCGACAA+AGG | + | chr3_3:66516473-66516492 | None:intergenic | 50.0% | |
| !! | CAAGTGCCACTGGTTTCAAG+AGG | + | chr3_3:66516689-66516708 | None:intergenic | 50.0% |
| ACTGAAGTGCACAAGACCCT+AGG | - | chr3_3:66517079-66517098 | Msa0466000:intron | 50.0% | |
| GTAGATGGTCTAAGGAACCG+AGG | + | chr3_3:66518233-66518252 | None:intergenic | 50.0% | |
| CCCCCATTGTAGATGGTCTA+AGG | + | chr3_3:66518241-66518260 | None:intergenic | 50.0% | |
| GCTCTAACAACTTGGCTCAG+TGG | + | chr3_3:66518907-66518926 | None:intergenic | 50.0% | |
| GCAAATTTATGCGTTGGGCG+TGG | - | chr3_3:66519213-66519232 | Msa0466000:intron | 50.0% | |
| TTGTCACACTTCCACCCACA+TGG | - | chr3_3:66519801-66519820 | Msa0466000:intron | 50.0% | |
| !! | CCGCTTGTTATTCAAGGTGC+TGG | - | chr3_3:66520241-66520260 | Msa0466000:intron | 50.0% |
| !! | GTTATTCAAGGTGCTGGAGC+TGG | - | chr3_3:66520247-66520266 | Msa0466000:intron | 50.0% |
| TGGTGTCCTTGCTGATATCG+TGG | - | chr3_3:66520288-66520307 | Msa0466000:intron | 50.0% | |
| !! | AGGGGAAAAGAGTGCTTCTC+AGG | + | chr3_3:66520662-66520681 | None:intergenic | 50.0% |
| GGGACTCTGCTTGAGAGTTG+TGG | - | chr3_3:66515910-66515929 | Msa0466000:intron | 55.0% | |
| !! | CTTTGTCGGCTCAAGCATGG+TGG | - | chr3_3:66516010-66516029 | Msa0466000:intron | 55.0% |
| CTAGGACCCCCCATTGTAGA+TGG | + | chr3_3:66518248-66518267 | None:intergenic | 55.0% | |
| ! | AGTCTGGGGTACACTGAACC+AGG | - | chr3_3:66518934-66518953 | Msa0466000:intron | 55.0% |
| ATTCCACCAAGGTCGTCACG+CGG | + | chr3_3:66519086-66519105 | None:intergenic | 55.0% | |
| TATGCGTTGGGCGTGGCTAA+TGG | - | chr3_3:66519220-66519239 | Msa0466000:intron | 55.0% | |
| ATGCGTTGGGCGTGGCTAAT+GGG | - | chr3_3:66519221-66519240 | Msa0466000:intron | 55.0% | |
| ! | TCTGTGTCATTGAGGGCCCA+AGG | - | chr3_3:66519730-66519749 | Msa0466000:CDS | 55.0% |
| GGAAATGACACGACTGCAGC+TGG | - | chr3_3:66520268-66520287 | Msa0466000:intron | 55.0% | |
| GACTCGTGTCGGATACGACG+TGG | + | chr3_3:66517284-66517303 | None:intergenic | 60.0% | |
| GCGTGACGACCTTGGTGGAA+TGG | - | chr3_3:66519085-66519104 | Msa0466000:intron | 60.0% | |
| TGCGTTGGGCGTGGCTAATG+GGG | - | chr3_3:66519222-66519241 | Msa0466000:intron | 60.0% | |
| GCAGATCCGCGTGACGACCT+TGG | - | chr3_3:66519077-66519096 | Msa0466000:intron | 65.0% | |
| GATCCGCGTGACGACCTTGG+TGG | - | chr3_3:66519080-66519099 | Msa0466000:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 66515140 | 66520901 | 66515140 | ID=Msa0466000;Name=Msa0466000 |
| chr3_3 | mRNA | 66515140 | 66520901 | 66515140 | ID=Msa0466000-mRNA-1;Parent=Msa0466000;Name=Msa0466000-mRNA-1;_AED=0.15;_eAED=0.15;_QI=253|0.90|1|1|0.81|0.83|12|348|360 |
| chr3_3 | exon | 66515140 | 66515469 | 66515140 | ID=Msa0466000-mRNA-1:exon:15137;Parent=Msa0466000-mRNA-1 |
| chr3_3 | exon | 66515668 | 66515833 | 66515668 | ID=Msa0466000-mRNA-1:exon:15136;Parent=Msa0466000-mRNA-1 |
| chr3_3 | exon | 66516290 | 66516453 | 66516290 | ID=Msa0466000-mRNA-1:exon:15135;Parent=Msa0466000-mRNA-1 |
| chr3_3 | exon | 66516560 | 66516613 | 66516560 | ID=Msa0466000-mRNA-1:exon:15134;Parent=Msa0466000-mRNA-1 |
| chr3_3 | exon | 66516920 | 66516960 | 66516920 | ID=Msa0466000-mRNA-1:exon:15133;Parent=Msa0466000-mRNA-1 |
| chr3_3 | exon | 66517086 | 66517178 | 66517086 | ID=Msa0466000-mRNA-1:exon:15132;Parent=Msa0466000-mRNA-1 |
| chr3_3 | exon | 66517326 | 66517413 | 66517326 | ID=Msa0466000-mRNA-1:exon:15131;Parent=Msa0466000-mRNA-1 |
| chr3_3 | exon | 66518734 | 66518787 | 66518734 | ID=Msa0466000-mRNA-1:exon:15130;Parent=Msa0466000-mRNA-1 |
| chr3_3 | exon | 66519462 | 66519577 | 66519462 | ID=Msa0466000-mRNA-1:exon:15129;Parent=Msa0466000-mRNA-1 |
| chr3_3 | exon | 66519707 | 66519784 | 66519707 | ID=Msa0466000-mRNA-1:exon:15128;Parent=Msa0466000-mRNA-1 |
| chr3_3 | exon | 66519980 | 66520130 | 66519980 | ID=Msa0466000-mRNA-1:exon:15127;Parent=Msa0466000-mRNA-1 |
| chr3_3 | exon | 66520553 | 66520901 | 66520553 | ID=Msa0466000-mRNA-1:exon:15126;Parent=Msa0466000-mRNA-1 |
| chr3_3 | five_prime_UTR | 66520649 | 66520901 | 66520649 | ID=Msa0466000-mRNA-1:five_prime_utr;Parent=Msa0466000-mRNA-1 |
| chr3_3 | CDS | 66520553 | 66520648 | 66520553 | ID=Msa0466000-mRNA-1:cds;Parent=Msa0466000-mRNA-1 |
| chr3_3 | CDS | 66519980 | 66520130 | 66519980 | ID=Msa0466000-mRNA-1:cds;Parent=Msa0466000-mRNA-1 |
| chr3_3 | CDS | 66519707 | 66519784 | 66519707 | ID=Msa0466000-mRNA-1:cds;Parent=Msa0466000-mRNA-1 |
| chr3_3 | CDS | 66519462 | 66519577 | 66519462 | ID=Msa0466000-mRNA-1:cds;Parent=Msa0466000-mRNA-1 |
| chr3_3 | CDS | 66518734 | 66518787 | 66518734 | ID=Msa0466000-mRNA-1:cds;Parent=Msa0466000-mRNA-1 |
| chr3_3 | CDS | 66517326 | 66517413 | 66517326 | ID=Msa0466000-mRNA-1:cds;Parent=Msa0466000-mRNA-1 |
| chr3_3 | CDS | 66517086 | 66517178 | 66517086 | ID=Msa0466000-mRNA-1:cds;Parent=Msa0466000-mRNA-1 |
| chr3_3 | CDS | 66516920 | 66516960 | 66516920 | ID=Msa0466000-mRNA-1:cds;Parent=Msa0466000-mRNA-1 |
| chr3_3 | CDS | 66516560 | 66516613 | 66516560 | ID=Msa0466000-mRNA-1:cds;Parent=Msa0466000-mRNA-1 |
| chr3_3 | CDS | 66516290 | 66516453 | 66516290 | ID=Msa0466000-mRNA-1:cds;Parent=Msa0466000-mRNA-1 |
| chr3_3 | CDS | 66515686 | 66515833 | 66515686 | ID=Msa0466000-mRNA-1:cds;Parent=Msa0466000-mRNA-1 |
| chr3_3 | three_prime_UTR | 66515668 | 66515685 | 66515668 | ID=Msa0466000-mRNA-1:three_prime_utr;Parent=Msa0466000-mRNA-1 |
| chr3_3 | three_prime_UTR | 66515140 | 66515469 | 66515140 | ID=Msa0466000-mRNA-1:three_prime_utr;Parent=Msa0466000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
