AlfalfaGEDB | Msa0985770

M. sativa cultivar zhongmu-4 / Msa0985770

KEGG: K15777
GO: -
PFAM: PF02900.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985770	XP_013468810.2	83.396	265	44	0	1	265	25	289	1.11e-165	470

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985770	sp\|Q70FG7\|DODA_BETVU	60.920	261	101	1	3	262	7	267	3.41e-118	342

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985770	A0A396JW51	83.396	265	44	0	1	265	25	289	5.28e-166	470

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0587920	Msa0985770	0.801838	7.452607e-49	-8.615850e-47
Msa0814230	Msa0985770	0.801409	9.128178e-49	-8.615850e-47
Msa0911100	Msa0985770	0.960419	1.548374e-118	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985770	MtrunA17_Chr1g0188451	83.396	265	44	0	1	265	25	289	1.02e-169	470
Msa0985770	MtrunA17_Chr6g0477101	67.416	267	84	3	1	265	1	266	4.73e-133	376
Msa0985770	MtrunA17_Chr6g0464111	85.616	146	20	1	121	265	1	146	8.90e-91	265
Msa0985770	MtrunA17_Chr6g0464101	73.077	52	9	1	64	110	18	69	7.91e-16	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985770	AT4G15093.1	61.961	255	93	3	3	253	4	258	2.60e-116	334

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Find 79 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTCTCATCGAAGGA+AGG	0.596245	6_4:+32826787	Msa0985770:CDS
AAACCTTGTTCAAGCTGCTG+GGG	0.587139	6_4:-32825341	None:intergenic
AAAGTTAGCAAAGAGGGTGA+AGG	0.634969	6_4:+32826464	Msa0985770:CDS
AACCAAGATCCCAGCTATCA+TGG	0.503856	6_4:-32827132	None:intergenic
AACGTTGACGGTTGGAACTA+AGG	0.447360	6_4:-32825280	None:intergenic
AACTACTGTCCTGTTCTGAG+TGG	0.690045	6_4:-32826709	None:intergenic
AACTTTGGTGCACCTGGTGC+TGG	0.390270	6_4:-32826447	None:intergenic
AAGGAACTTATCGAAGCGTC+TGG	0.430194	6_4:+32826483	Msa0985770:CDS
AATACACAAAATGGCATTGA+AGG	0.455237	6_4:+32825119	None:intergenic
AATTCAACAGCCCAGGGATG+AGG	0.500569	6_4:-32826750	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATGGAAGTTCTTTAAATCA+TGG	+	chr6_4:32825199-32825218	Msa0985770:CDS	30.0%
GTTCTTTAAATCATGGAAAG+AGG	+	chr6_4:32825206-32825225	Msa0985770:CDS	30.0%
TGTTTAAGTCCCTACAAAAT+TGG	+	chr6_4:32825433-32825452	Msa0985770:intron	30.0%
GTTTAAGTCCCTACAAAATT+GGG	+	chr6_4:32825434-32825453	Msa0985770:intron	30.0%
TTATAGGGACTAAAAGTTGA+AGG	-	chr6_4:32825555-32825574	None:intergenic	30.0%
AAATAAGTAAAGTCTGACCA+CGG	-	chr6_4:32826130-32826149	None:intergenic	30.0%
CTTTAGATATGCCTAAGTTT+AGG	+	chr6_4:32826277-32826296	Msa0985770:intron	30.0%
GACATAGGTACAAAAGAAAA+AGG	-	chr6_4:32826394-32826413	None:intergenic	30.0%
AAGAACAAGTTCAATGACAT+AGG	-	chr6_4:32826409-32826428	None:intergenic	30.0%
TAGACGAAGATAAAAAACGT+GGG	+	chr6_4:32826517-32826536	Msa0985770:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	32825129	32827198	32825129	ID=Msa0985770;Name=Msa0985770
chr6_4	mRNA	32825129	32827198	32825129	ID=Msa0985770-mRNA-1;Parent=Msa0985770;Name=Msa0985770-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|3\|0\|265
chr6_4	exon	32825129	32825359	32825129	ID=Msa0985770-mRNA-1:exon:8680;Parent=Msa0985770-mRNA-1
chr6_4	exon	32826438	32826808	32826438	ID=Msa0985770-mRNA-1:exon:8681;Parent=Msa0985770-mRNA-1
chr6_4	exon	32827003	32827198	32827003	ID=Msa0985770-mRNA-1:exon:8682;Parent=Msa0985770-mRNA-1
chr6_4	CDS	32825129	32825359	32825129	ID=Msa0985770-mRNA-1:cds;Parent=Msa0985770-mRNA-1
chr6_4	CDS	32826438	32826808	32826438	ID=Msa0985770-mRNA-1:cds;Parent=Msa0985770-mRNA-1
chr6_4	CDS	32827003	32827198	32827003	ID=Msa0985770-mRNA-1:cds;Parent=Msa0985770-mRNA-1

Gene Sequence

>Msa0985770

ATGGCATTGAAGGAAACATTTTACATACCACATGGTACACCAACGCTTGCCATAGATGAAACAACTCCTGCATGGAAGTTCTTTAAATCATGGAAAGAGGTGTTTCCTGAAAGACCCTCTTCCATTCTTGTTATCTCTGCTCATTGGGACACCTTAGTTCCAACCGTCAACGTTGTTGATCACAATGAAACCATGTATGACTTTCAAGGCTTCCCCAGCAGCTTGAACAAGCTCAAATATCCAGCACCAGGTGCACCAAAGTTAGCAAAGAGGGTGAAGGAACTTATCGAAGCGTCTGGGTTGAGTCAGGTAGACGAAGATAAAAAACGTGGGCTTGATCATGGAACATGGGTGCCTCTAATGTTGATGTATCCAGAGGCTGATATACCAGTGTGTCAACTATCTGTTTCAACAAATAGAAATGGTACTTACCATTATAACTTAGGAAAAGCATTAGCTCCTCTTAAAGATGAGGGTGTTCTGATACTCGGATCCGGAAATGCCACTCAGAACAGGACAGTAGTTGCTCCTCGCGAAAGCCCTCCTCATCCCTGGGCTGTTGAATTTATTTCCTGGTTAAAAAATTCTCTCATCGAAGGAAGATATGATGATGTAAATCGTTATGAAGAGAAGGCCCCATATGCAAAGTGGGCTCATCCATGGCCTGATCACTTATTTCCATTGCATGTAGCTATGGGAGCTGCTGGTGAAAATTCAAAGGCCAAAGTTGTCCATGATAGCTGGGATCTTGGTTCTTTTTCTTATGTTTCCTTTGGTTTCACAGCAGCTTGTACTTGA

Protein sequence

>Msa0985770

MALKETFYIPHGTPTLAIDETTPAWKFFKSWKEVFPERPSSILVISAHWDTLVPTVNVVDHNETMYDFQGFPSSLNKLKYPAPGAPKLAKRVKELIEASGLSQVDEDKKRGLDHGTWVPLMLMYPEADIPVCQLSVSTNRNGTYHYNLGKALAPLKDEGVLILGSGNATQNRTVVAPRESPPHPWAVEFISWLKNSLIEGRYDDVNRYEEKAPYAKWAHPWPDHLFPLHVAMGAAGENSKAKVVHDSWDLGSFSYVSFGFTAACT*