Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987280 | XP_003619119.3 | 96.030 | 403 | 16 | 0 | 1 | 403 | 15 | 417 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987280 | sp|Q8H0Z6|IP5P3_ARATH | 49.099 | 444 | 174 | 9 | 1 | 403 | 10 | 442 | 8.96e-127 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987280 | G7KIC8 | 96.030 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 0.0 | 799 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0950520 | Msa0987280 | 0.821245 | 4.473379e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987280 | MtrunA17_Chr6g0466801 | 96.030 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 0.0 | 799 |
| Msa0987280 | MtrunA17_Chr1g0201271 | 60.194 | 412 | 146 | 6 | 1 | 402 | 1 | 404 | 6.12e-156 | 455 |
| Msa0987280 | MtrunA17_Chr4g0054951 | 32.530 | 415 | 197 | 7 | 1 | 403 | 1 | 344 | 1.61e-62 | 211 |
| Msa0987280 | MtrunA17_Chr5g0400311 | 34.033 | 429 | 229 | 10 | 1 | 403 | 1 | 401 | 9.36e-60 | 205 |
| Msa0987280 | MtrunA17_Chr4g0054941 | 32.593 | 405 | 193 | 12 | 10 | 402 | 7 | 343 | 3.83e-54 | 189 |
| Msa0987280 | MtrunA17_Chr1g0205121 | 34.054 | 185 | 116 | 2 | 1 | 185 | 1 | 179 | 7.60e-27 | 113 |
| Msa0987280 | MtrunA17_Chr1g0185281 | 32.812 | 256 | 132 | 9 | 1 | 230 | 1 | 242 | 1.05e-26 | 112 |
| Msa0987280 | MtrunA17_Chr7g0260081 | 32.653 | 196 | 121 | 2 | 3 | 198 | 4 | 188 | 1.49e-25 | 108 |
| Msa0987280 | MtrunA17_Chr5g0394901 | 43.925 | 107 | 60 | 0 | 79 | 185 | 75 | 181 | 5.36e-23 | 101 |
| Msa0987280 | MtrunA17_Chr7g0263111 | 56.410 | 78 | 34 | 0 | 90 | 167 | 81 | 158 | 1.70e-22 | 99.4 |
| Msa0987280 | MtrunA17_Chr6g0479511 | 33.750 | 160 | 87 | 3 | 71 | 229 | 21 | 162 | 2.44e-19 | 89.4 |
| Msa0987280 | MtrunA17_Chr8g0382571 | 55.556 | 72 | 32 | 0 | 96 | 167 | 37 | 108 | 2.87e-18 | 86.7 |
| Msa0987280 | MtrunA17_Chr6g0452181 | 51.948 | 77 | 35 | 1 | 93 | 167 | 51 | 127 | 1.11e-17 | 84.7 |
| Msa0987280 | MtrunA17_Chr8g0355021 | 38.739 | 111 | 66 | 1 | 57 | 167 | 23 | 131 | 3.68e-17 | 83.6 |
| Msa0987280 | MtrunA17_Chr1g0165011 | 48.684 | 76 | 38 | 1 | 94 | 168 | 60 | 135 | 2.91e-16 | 80.5 |
| Msa0987280 | MtrunA17_Chr8g0375751 | 52.113 | 71 | 33 | 1 | 99 | 168 | 61 | 131 | 9.74e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987280 | AT1G71710.2 | 49.099 | 444 | 174 | 9 | 1 | 403 | 1 | 433 | 4.30e-128 | 384 |
| Msa0987280 | AT1G71710.1 | 49.099 | 444 | 174 | 9 | 1 | 403 | 10 | 442 | 9.11e-128 | 384 |
| Msa0987280 | AT1G34120.4 | 44.670 | 394 | 163 | 6 | 10 | 402 | 27 | 366 | 1.99e-89 | 279 |
| Msa0987280 | AT1G34120.1 | 44.670 | 394 | 163 | 6 | 10 | 402 | 27 | 366 | 3.69e-88 | 279 |
| Msa0987280 | AT1G34120.3 | 44.221 | 398 | 163 | 7 | 10 | 402 | 27 | 370 | 4.47e-87 | 276 |
| Msa0987280 | AT1G34120.2 | 44.221 | 398 | 163 | 7 | 10 | 402 | 27 | 370 | 4.88e-87 | 276 |
| Msa0987280 | AT4G18010.2 | 32.080 | 452 | 229 | 12 | 1 | 403 | 1 | 423 | 3.21e-54 | 190 |
| Msa0987280 | AT4G18010.1 | 32.080 | 452 | 229 | 12 | 1 | 403 | 1 | 423 | 8.08e-54 | 190 |
| Msa0987280 | AT1G34120.5 | 38.583 | 254 | 115 | 4 | 150 | 402 | 2 | 215 | 6.37e-40 | 148 |
| Msa0987280 | AT1G05470.2 | 38.350 | 206 | 101 | 8 | 1 | 197 | 1 | 189 | 3.30e-29 | 120 |
| Msa0987280 | AT1G05470.1 | 38.350 | 206 | 101 | 8 | 1 | 197 | 1 | 189 | 3.30e-29 | 120 |
| Msa0987280 | AT3G63240.2 | 35.514 | 214 | 108 | 4 | 1 | 210 | 1 | 188 | 2.75e-26 | 111 |
| Msa0987280 | AT3G63240.1 | 35.514 | 214 | 108 | 4 | 1 | 210 | 1 | 188 | 2.75e-26 | 111 |
| Msa0987280 | AT2G32010.2 | 36.612 | 183 | 101 | 6 | 17 | 197 | 17 | 186 | 1.50e-25 | 109 |
| Msa0987280 | AT2G32010.1 | 36.612 | 183 | 101 | 6 | 17 | 197 | 17 | 186 | 1.50e-25 | 109 |
| Msa0987280 | AT2G32010.4 | 36.612 | 183 | 101 | 6 | 17 | 197 | 17 | 186 | 1.50e-25 | 109 |
| Msa0987280 | AT2G32010.3 | 36.612 | 183 | 101 | 6 | 17 | 197 | 17 | 186 | 1.50e-25 | 109 |
| Msa0987280 | AT2G37440.1 | 36.478 | 159 | 80 | 2 | 13 | 167 | 11 | 152 | 1.11e-23 | 103 |
| Msa0987280 | AT2G37440.3 | 36.478 | 159 | 80 | 2 | 13 | 167 | 11 | 152 | 1.11e-23 | 103 |
| Msa0987280 | AT5G65090.2 | 52.055 | 73 | 35 | 0 | 96 | 168 | 8 | 80 | 1.28e-18 | 88.2 |
| Msa0987280 | AT5G65090.3 | 52.055 | 73 | 35 | 0 | 96 | 168 | 71 | 143 | 1.60e-18 | 88.2 |
| Msa0987280 | AT5G65090.1 | 52.055 | 73 | 35 | 0 | 96 | 168 | 71 | 143 | 1.60e-18 | 88.2 |
| Msa0987280 | AT2G37440.2 | 42.593 | 108 | 42 | 2 | 102 | 190 | 3 | 109 | 2.11e-17 | 84.0 |
| Msa0987280 | AT2G01900.1 | 43.182 | 88 | 49 | 1 | 82 | 168 | 42 | 129 | 8.03e-16 | 79.3 |
| Msa0987280 | AT2G01900.2 | 43.182 | 88 | 49 | 1 | 82 | 168 | 42 | 129 | 8.24e-16 | 79.3 |
| Msa0987280 | AT2G01900.3 | 43.182 | 88 | 49 | 1 | 82 | 168 | 50 | 137 | 8.42e-16 | 79.3 |
| Msa0987280 | AT5G04980.2 | 50.725 | 69 | 34 | 0 | 96 | 164 | 36 | 104 | 4.42e-15 | 77.4 |
| Msa0987280 | AT5G04980.1 | 50.725 | 69 | 34 | 0 | 96 | 164 | 7 | 75 | 5.38e-15 | 77.0 |
| Msa0987280 | AT5G04980.3 | 50.725 | 69 | 34 | 0 | 96 | 164 | 7 | 75 | 5.38e-15 | 77.0 |
Find 92 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTCTTTCAAGTCATTTA+TGG | 0.108818 | 6_4:+37239879 | Msa0987280:CDS |
| CGAATAATATTCTCCCATTT+TGG | 0.130725 | 6_4:-37239337 | None:intergenic |
| CAACATGAGCACAAGTTTAT+TGG | 0.164558 | 6_4:+37239561 | Msa0987280:CDS |
| AATATTTCTTCTTCAATATC+AGG | 0.204515 | 6_4:-37239454 | None:intergenic |
| GGGAAGAAAGTCACGGTTTA+TGG | 0.237843 | 6_4:+37238722 | Msa0987280:CDS |
| TGGTTAGTGTCTTGGCCTTT+TGG | 0.238468 | 6_4:-37239717 | None:intergenic |
| TTCAGATCCACTAAGCATTC+TGG | 0.288245 | 6_4:-37239737 | None:intergenic |
| AAGGCTTCAAGGTCAATTTC+AGG | 0.297924 | 6_4:-37239928 | None:intergenic |
| ACACTCGTCCTGTTCCAAAA+TGG | 0.312191 | 6_4:+37239323 | Msa0987280:CDS |
| CAGACTTTGTTCCAAAGTTA+AGG | 0.328739 | 6_4:+37238874 | Msa0987280:intron |
| TGGAACAAAATTTGTGTAAG+TGG | 0.333984 | 6_4:-37237164 | None:intergenic |
| CAAGAGTGGTGATGCGTAAA+TGG | 0.340246 | 6_4:+37237432 | Msa0987280:CDS |
| CAAAATGGGAGAATATTATT+CGG | 0.345468 | 6_4:+37239338 | Msa0987280:CDS |
| TCGACATGGTGTCAAATATT+TGG | 0.360186 | 6_4:-37240925 | None:intergenic |
| GACTTCTGTTTCCTTAACTT+TGG | 0.374912 | 6_4:-37238885 | None:intergenic |
| TTGAATGATTTAAAAGAAGT+TGG | 0.383279 | 6_4:-37239823 | None:intergenic |
| TCAAACTCATCATCATCTTC+AGG | 0.386739 | 6_4:-37237494 | None:intergenic |
| AGCAGATGTAGCGGAGGCTC+CGG | 0.388719 | 6_4:-37239778 | None:intergenic |
| TGGCGAGGAAGTTCATCCTT+TGG | 0.390925 | 6_4:+37239498 | Msa0987280:CDS |
| TCCGCTTCATTAAGGCTTCA+AGG | 0.398173 | 6_4:-37239939 | None:intergenic |
| TAATAAAAGAAACAGTGATT+TGG | 0.400605 | 6_4:-37237184 | None:intergenic |
| ATGCGTAAATGGCTTAATAT+TGG | 0.402138 | 6_4:+37237443 | Msa0987280:CDS |
| TCAGGAAGCAAACCCATTCC+CGG | 0.402929 | 6_4:-37239910 | None:intergenic |
| AAAATATTACCAGCATTTAA+GGG | 0.422970 | 6_4:-37239289 | None:intergenic |
| CACTCGTCCTGTTCCAAAAT+GGG | 0.423061 | 6_4:+37239324 | Msa0987280:CDS |
| AAGCATTCTGGTTAGTGTCT+TGG | 0.423661 | 6_4:-37239725 | None:intergenic |
| ATGGATGACATGCCGGGAAT+GGG | 0.438439 | 6_4:+37239898 | Msa0987280:CDS |
| TATGGATGACATGCCGGGAA+TGG | 0.445066 | 6_4:+37239897 | Msa0987280:CDS |
| GTCATTTATGGATGACATGC+CGG | 0.447416 | 6_4:+37239891 | Msa0987280:CDS |
| ATATAGGTATCAGAAATATC+TGG | 0.448438 | 6_4:+37240900 | Msa0987280:intron |
| TGCGGCCAATCAAACCTCTT+CGG | 0.454658 | 6_4:-37239661 | None:intergenic |
| TCATCAATATCTAGGTCATC+AGG | 0.457091 | 6_4:-37239103 | None:intergenic |
| AAAGAAGATCTCCGTATGTA+AGG | 0.461784 | 6_4:+37239962 | Msa0987280:CDS |
| TAAACATATTCATAATTTGA+AGG | 0.468582 | 6_4:+37240044 | Msa0987280:CDS |
| GAAGCTCCGTCTGAATCAAA+TGG | 0.471758 | 6_4:+37238759 | Msa0987280:CDS |
| CAAGCCATTCATCAATATCT+AGG | 0.474772 | 6_4:-37239111 | None:intergenic |
| CTAGGGTATGTGTTGGGACA+TGG | 0.475093 | 6_4:+37239059 | Msa0987280:intron |
| ACACTAACCAGAATGCTTAG+TGG | 0.476526 | 6_4:+37239730 | Msa0987280:CDS |
| TGTAAGTGGGACAAAGATTG+AGG | 0.478434 | 6_4:-37237150 | None:intergenic |
| AAAATGGGAGAATATTATTC+GGG | 0.480164 | 6_4:+37239339 | Msa0987280:CDS |
| AAGGATTGTTAGCAAGCAAA+TGG | 0.486518 | 6_4:+37239981 | Msa0987280:CDS |
| ATCAATCTTAACCGGTTCAC+TGG | 0.488190 | 6_4:-37239617 | None:intergenic |
| GGAACAAAATTTGTGTAAGT+GGG | 0.494585 | 6_4:-37237163 | None:intergenic |
| CAGTGTCAACACCAGTGAAC+CGG | 0.496890 | 6_4:+37239606 | Msa0987280:CDS |
| TGTGTTGGGACATGGAATGT+TGG | 0.503587 | 6_4:+37239067 | Msa0987280:CDS |
| GAAGAACATATTATTTGTGA+TGG | 0.509124 | 6_4:+37239523 | Msa0987280:CDS |
| TATTTGTGATGGAAATACTA+CGG | 0.509817 | 6_4:+37239534 | Msa0987280:CDS |
| ATATTTCTTCTTCAATATCA+GGG | 0.510823 | 6_4:-37239453 | None:intergenic |
| GGATGCATCAATTTCCCAAA+AGG | 0.512360 | 6_4:+37239702 | Msa0987280:CDS |
| TCTGCTCTCTCAGAGAGTAT+TGG | 0.518854 | 6_4:+37239795 | Msa0987280:CDS |
| AAGGACACAGAACCACCAAC+AGG | 0.521375 | 6_4:+37237267 | Msa0987280:CDS |
| CCAGCTGACATCTATGTCCT+CGG | 0.521688 | 6_4:+37239145 | Msa0987280:CDS |
| TCATTTATGGATGACATGCC+GGG | 0.524357 | 6_4:+37239892 | Msa0987280:CDS |
| TCATGACTGTATGGGTTCGT+CGG | 0.526788 | 6_4:+37240013 | Msa0987280:CDS |
| ACCTTGAAGCCTTAATGAAG+CGG | 0.527269 | 6_4:+37239938 | Msa0987280:CDS |
| ATTTGTGATGGAAATACTAC+GGG | 0.530338 | 6_4:+37239535 | Msa0987280:CDS |
| TTCGAAAGTGATAGCGACAT+TGG | 0.530439 | 6_4:+37239478 | Msa0987280:CDS |
| AAGGATCGGTTTGAGCTGGC+CGG | 0.535075 | 6_4:+37239759 | Msa0987280:CDS |
| CAGCTGACATCTATGTCCTC+GGG | 0.538007 | 6_4:+37239146 | Msa0987280:CDS |
| GCAAAGTCCACCAGAAAACA+TGG | 0.538223 | 6_4:+37239681 | Msa0987280:CDS |
| TGACTCCTAGGGTATGTGTT+GGG | 0.540483 | 6_4:+37239053 | Msa0987280:intron |
| CGGTTCACTGGTGTTGACAC+TGG | 0.542450 | 6_4:-37239605 | None:intergenic |
| ATTGTTAGCAAGCAAATGGT+TGG | 0.547014 | 6_4:+37239985 | Msa0987280:CDS |
| GAGATTGTACCCTTAAATGC+TGG | 0.547310 | 6_4:+37239280 | Msa0987280:CDS |
| ATGTTACCATTTGATTCAGA+CGG | 0.548134 | 6_4:-37238765 | None:intergenic |
| AATAAAAGTGTACCTGTTGG+TGG | 0.548173 | 6_4:-37237279 | None:intergenic |
| TTTCAACAGTGATGAAGGAA+AGG | 0.551621 | 6_4:+37237248 | Msa0987280:exon |
| CTGAAAGGATCGGTTTGAGC+TGG | 0.554541 | 6_4:+37239755 | Msa0987280:CDS |
| CCGAGGACATAGATGTCAGC+TGG | 0.555064 | 6_4:-37239145 | None:intergenic |
| GTGGCTCTTTCTGCTCGACA+TGG | 0.556852 | 6_4:-37240939 | None:intergenic |
| ATGACCTAGATATTGATGAA+TGG | 0.558926 | 6_4:+37239107 | Msa0987280:CDS |
| TTGCTAACAATCCTTACATA+CGG | 0.569585 | 6_4:-37239973 | None:intergenic |
| GCCGTCAAAATTTAAGCCAT+CGG | 0.574058 | 6_4:+37239423 | Msa0987280:CDS |
| CTTAGTGGATCTGAAAGGAT+CGG | 0.577607 | 6_4:+37239745 | Msa0987280:CDS |
| CTCTGAGAGAGCAGATGTAG+CGG | 0.578673 | 6_4:-37239787 | None:intergenic |
| ATAATATGTTCTTCATCCAA+AGG | 0.581319 | 6_4:-37239514 | None:intergenic |
| CTGACTCCTAGGGTATGTGT+TGG | 0.584278 | 6_4:+37239052 | Msa0987280:intron |
| CTAGATATTGATGAATGGCT+TGG | 0.587591 | 6_4:+37239112 | Msa0987280:CDS |
| TGAGAGAGCAGATGTAGCGG+AGG | 0.599168 | 6_4:-37239784 | None:intergenic |
| AAGTGATAGCGACATTGGCG+AGG | 0.613888 | 6_4:+37239483 | Msa0987280:CDS |
| GTTGGGACATGGAATGTTGG+AGG | 0.614118 | 6_4:+37239070 | Msa0987280:CDS |
| CAGTGTGGGGAAGAAAGTCA+CGG | 0.618301 | 6_4:+37238715 | Msa0987280:intron |
| ATATCAGGGTCATCCTCCGA+TGG | 0.624050 | 6_4:-37239439 | None:intergenic |
| GAATGCTTAGTGGATCTGAA+AGG | 0.639563 | 6_4:+37239740 | Msa0987280:CDS |
| TGAGATTCTGTAAAGTTGTG+TGG | 0.639960 | 6_4:-37240958 | None:intergenic |
| GAATATGATGATGAACATGA+AGG | 0.642715 | 6_4:+37237530 | Msa0987280:CDS |
| GTCAAAATTTAAGCCATCGG+AGG | 0.648754 | 6_4:+37239426 | Msa0987280:CDS |
| TCAATATCTAGGTCATCAGG+TGG | 0.654491 | 6_4:-37239100 | None:intergenic |
| ACTGGCACTATCAGCAACGT+CGG | 0.673608 | 6_4:-37239587 | None:intergenic |
| TCACGGTTTATGGACAACAG+AGG | 0.683441 | 6_4:+37238732 | Msa0987280:CDS |
| ACATAAACACAAAGGAACTG+AGG | 0.685610 | 6_4:+37238928 | Msa0987280:CDS |
| ATCTCAGTACATAAACACAA+AGG | 0.695319 | 6_4:+37238920 | Msa0987280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTGTTTTTTTTTTTTT+TGG | + | chr6_4:37237325-37237344 | Msa0987280:intron | 10.0% |
| !!! | TTGTTGTTTTTTTTTTTTTT+GGG | + | chr6_4:37237326-37237345 | Msa0987280:intron | 10.0% |
| !! | CTTTAATAAAATAAAAAAAC+TGG | - | chr6_4:37238114-37238133 | None:intergenic | 10.0% |
| !!! | TTTTAGTAAATATTCAAAGT+TGG | + | chr6_4:37237680-37237699 | Msa0987280:intron | 15.0% |
| !!! | CATTTTGAAATATTATAATC+TGG | - | chr6_4:37237741-37237760 | None:intergenic | 15.0% |
| !! | TAATGAATAGTTAATATATC+TGG | + | chr6_4:37237845-37237864 | Msa0987280:intron | 15.0% |
| !! | CATTGAATAATTGATATATT+TGG | - | chr6_4:37237884-37237903 | None:intergenic | 15.0% |
| !!! | ATTATTCACTTTTTTTGATT+CGG | + | chr6_4:37237960-37237979 | Msa0987280:intron | 15.0% |
| !! | TAAACATATTCATAATTTGA+AGG | + | chr6_4:37240044-37240063 | Msa0987280:CDS | 15.0% |
| !! | TTTAAGGATTAAAAAAAGTT+GGG | + | chr6_4:37240244-37240263 | Msa0987280:intron | 15.0% |
| !! | TATTTACTTATAAAAGAGTT+TGG | + | chr6_4:37240439-37240458 | Msa0987280:intron | 15.0% |
| !!! | TGTTAATAGTTGTAATTTTA+GGG | - | chr6_4:37240588-37240607 | None:intergenic | 15.0% |
| !!! | TTGTTAATAGTTGTAATTTT+AGG | - | chr6_4:37240589-37240608 | None:intergenic | 15.0% |
| !! | AAATTTCTCTTCATTTATAT+AGG | + | chr6_4:37240884-37240903 | Msa0987280:intron | 15.0% |
| !! | TAATAAAAGAAACAGTGATT+TGG | - | chr6_4:37237187-37237206 | None:intergenic | 20.0% |
| !!! | ATTCTGTATTTTTTCCATTT+TGG | + | chr6_4:37237563-37237582 | Msa0987280:intron | 20.0% |
| !! | AACAAAAAAATTCACCAAAA+TGG | - | chr6_4:37237580-37237599 | None:intergenic | 20.0% |
| !!! | AGATTCTATTTTGATGATTT+TGG | + | chr6_4:37237606-37237625 | Msa0987280:intron | 20.0% |
| !!! | TATTTTGATGATTTTGGAAA+TGG | + | chr6_4:37237612-37237631 | Msa0987280:intron | 20.0% |
| !!! | ATTTTGATGATTTTGGAAAT+GGG | + | chr6_4:37237613-37237632 | Msa0987280:intron | 20.0% |
| !!! | TTTGAAATATTATAATCTGG+AGG | - | chr6_4:37237738-37237757 | None:intergenic | 20.0% |
| !!! | ATTAACATTTTGCAATTTCA+AGG | - | chr6_4:37237766-37237785 | None:intergenic | 20.0% |
| !! | AAAAAAAGTGAATAATGACA+TGG | - | chr6_4:37237956-37237975 | None:intergenic | 20.0% |
| !!! | ACACATTTTTTTTAGCTTTA+TGG | + | chr6_4:37238070-37238089 | Msa0987280:intron | 20.0% |
| !!! | CACATTTTTTTTAGCTTTAT+GGG | + | chr6_4:37238071-37238090 | Msa0987280:intron | 20.0% |
| !!! | ATACAGTCCTATAATTTTAT+GGG | + | chr6_4:37238383-37238402 | Msa0987280:intron | 20.0% |
| !! | TGTTTATAATTCTTGTCATT+TGG | + | chr6_4:37238647-37238666 | Msa0987280:intron | 20.0% |
| !! | CAATTATAGAGAAAAAACAT+CGG | - | chr6_4:37238833-37238852 | None:intergenic | 20.0% |
| !! | AAAATATTACCAGCATTTAA+GGG | - | chr6_4:37239292-37239311 | None:intergenic | 20.0% |
| !! | AAAAATATTACCAGCATTTA+AGG | - | chr6_4:37239293-37239312 | None:intergenic | 20.0% |
| !!! | TTAAATGCTGGTAATATTTT+TGG | + | chr6_4:37239292-37239311 | Msa0987280:CDS | 20.0% |
| !! | ATATTTCTTCTTCAATATCA+GGG | - | chr6_4:37239456-37239475 | None:intergenic | 20.0% |
| !! | AATATTTCTTCTTCAATATC+AGG | - | chr6_4:37239457-37239476 | None:intergenic | 20.0% |
| !!! | CTTTTATAATCAATCTTAAC+CGG | - | chr6_4:37239628-37239647 | None:intergenic | 20.0% |
| !! | TTGAATGATTTAAAAGAAGT+TGG | - | chr6_4:37239826-37239845 | None:intergenic | 20.0% |
| !!! | TAATTCTTTCAAGTCATTTA+TGG | + | chr6_4:37239879-37239898 | Msa0987280:CDS | 20.0% |
| !! | GTTTAAGGATTAAAAAAAGT+TGG | + | chr6_4:37240243-37240262 | Msa0987280:intron | 20.0% |
| !! | AACTTGAAATAAGTTAGATT+AGG | - | chr6_4:37240384-37240403 | None:intergenic | 20.0% |
| !!! | TAACTTATTTCAAGTTCTAT+GGG | + | chr6_4:37240388-37240407 | Msa0987280:intron | 20.0% |
| !! | TTTAAGCATGAAAAAATGTT+GGG | - | chr6_4:37240666-37240685 | None:intergenic | 20.0% |
| !! | ATAAATAAAAGTGTACCTGT+TGG | - | chr6_4:37237285-37237304 | None:intergenic | 25.0% |
| ! | AAGAAAATTGCAGAGAAATT+GGG | + | chr6_4:37237370-37237389 | Msa0987280:intron | 25.0% |
| ! | TAGTAAATATTCAAAGTTGG+TGG | + | chr6_4:37237683-37237702 | Msa0987280:intron | 25.0% |
| ! | TGCAAAATGTTAATCAAGTT+CGG | + | chr6_4:37237772-37237791 | Msa0987280:intron | 25.0% |
| !!! | TAGGCAAAGATTATTTTTTC+AGG | - | chr6_4:37237909-37237928 | None:intergenic | 25.0% |
| !! | GATACAGTCCTATAATTTTA+TGG | + | chr6_4:37238382-37238401 | Msa0987280:intron | 25.0% |
| ! | CTATTTGCCCATAAAATTAT+AGG | - | chr6_4:37238393-37238412 | None:intergenic | 25.0% |
| !! | AATTTTATGGGCAAATAGTA+TGG | + | chr6_4:37238395-37238414 | Msa0987280:intron | 25.0% |
| !! | ATTTTATGGGCAAATAGTAT+GGG | + | chr6_4:37238396-37238415 | Msa0987280:intron | 25.0% |
| ! | AGTTTGGAAAATTGAGAATT+AGG | + | chr6_4:37238556-37238575 | Msa0987280:intron | 25.0% |
| ! | GTTTGGAAAATTGAGAATTA+GGG | + | chr6_4:37238557-37238576 | Msa0987280:intron | 25.0% |
| ! | AACAAAGTCTGTAATTCAAA+AGG | - | chr6_4:37238865-37238884 | None:intergenic | 25.0% |
| ! | ATCACTTTCATCAAACAAAT+CGG | - | chr6_4:37239238-37239257 | None:intergenic | 25.0% |
| ! | CAAAATGGGAGAATATTATT+CGG | + | chr6_4:37239338-37239357 | Msa0987280:CDS | 25.0% |
| ! | AAAATGGGAGAATATTATTC+GGG | + | chr6_4:37239339-37239358 | Msa0987280:CDS | 25.0% |
| ! | ATAATATGTTCTTCATCCAA+AGG | - | chr6_4:37239517-37239536 | None:intergenic | 25.0% |
| ! | GAAGAACATATTATTTGTGA+TGG | + | chr6_4:37239523-37239542 | Msa0987280:CDS | 25.0% |
| !! | TATTTGTGATGGAAATACTA+CGG | + | chr6_4:37239534-37239553 | Msa0987280:CDS | 25.0% |
| !!! | GATTGATTTTAACGACTTAA+AGG | - | chr6_4:37239851-37239870 | None:intergenic | 25.0% |
| !!! | CTAACTTATTTCAAGTTCTA+TGG | + | chr6_4:37240387-37240406 | Msa0987280:intron | 25.0% |
| !! | TAACTTATTTCAAGTGTTGT+GGG | - | chr6_4:37240527-37240546 | None:intergenic | 25.0% |
| !! | ATAAGTTAGATTAAGAGCAT+TGG | + | chr6_4:37240539-37240558 | Msa0987280:intron | 25.0% |
| !!! | AATAGTTGTAATTTTAGGGA+TGG | - | chr6_4:37240584-37240603 | None:intergenic | 25.0% |
| ! | GTTTAAGCATGAAAAAATGT+TGG | - | chr6_4:37240667-37240686 | None:intergenic | 25.0% |
| ! | ATATAGGTATCAGAAATATC+TGG | + | chr6_4:37240900-37240919 | Msa0987280:intron | 25.0% |
| GGAACAAAATTTGTGTAAGT+GGG | - | chr6_4:37237166-37237185 | None:intergenic | 30.0% | |
| TGGAACAAAATTTGTGTAAG+TGG | - | chr6_4:37237167-37237186 | None:intergenic | 30.0% | |
| ! | CAAATTTTCAACAGTGATGA+AGG | + | chr6_4:37237243-37237262 | Msa0987280:exon | 30.0% |
| !!! | TTTTTTGGGTTTGTTGATGA+TGG | + | chr6_4:37237340-37237359 | Msa0987280:intron | 30.0% |
| GAAGAAAATTGCAGAGAAAT+TGG | + | chr6_4:37237369-37237388 | Msa0987280:intron | 30.0% | |
| ! | TTCATCAATACAGCTTTTCT+GGG | + | chr6_4:37237409-37237428 | Msa0987280:intron | 30.0% |
| ATGCGTAAATGGCTTAATAT+TGG | + | chr6_4:37237443-37237462 | Msa0987280:CDS | 30.0% | |
| ! | GAATATGATGATGAACATGA+AGG | + | chr6_4:37237530-37237549 | Msa0987280:CDS | 30.0% |
| ATATTATAATCTGGAGGACT+AGG | - | chr6_4:37237732-37237751 | None:intergenic | 30.0% | |
| TCATTACTTGTATACGAGAT+CGG | - | chr6_4:37237831-37237850 | None:intergenic | 30.0% | |
| TCATTAAGTGGGTAATATCA+AGG | - | chr6_4:37238341-37238360 | None:intergenic | 30.0% | |
| TCACATTATCGTCATTAAGT+GGG | - | chr6_4:37238352-37238371 | None:intergenic | 30.0% | |
| TATTTCACCAATAGTATCTC+AGG | + | chr6_4:37238434-37238453 | Msa0987280:intron | 30.0% | |
| ATTTCACCAATAGTATCTCA+GGG | + | chr6_4:37238435-37238454 | Msa0987280:intron | 30.0% | |
| AGATTGTTCCTGTGAATTAT+AGG | + | chr6_4:37238621-37238640 | Msa0987280:intron | 30.0% | |
| ATGTTACCATTTGATTCAGA+CGG | - | chr6_4:37238768-37238787 | None:intergenic | 30.0% | |
| ATCTCAGTACATAAACACAA+AGG | + | chr6_4:37238920-37238939 | Msa0987280:CDS | 30.0% | |
| ATGACCTAGATATTGATGAA+TGG | + | chr6_4:37239107-37239126 | Msa0987280:CDS | 30.0% | |
| ! | AAAACTTTGAGAAGTATGCT+CGG | - | chr6_4:37239193-37239212 | None:intergenic | 30.0% |
| ! | CGAATAATATTCTCCCATTT+TGG | - | chr6_4:37239340-37239359 | None:intergenic | 30.0% |
| !!! | CATTTTGTTTTCGTTACTGA+AGG | - | chr6_4:37239385-37239404 | None:intergenic | 30.0% |
| ! | ATTTGTGATGGAAATACTAC+GGG | + | chr6_4:37239535-37239554 | Msa0987280:CDS | 30.0% |
| TTGCTAACAATCCTTACATA+CGG | - | chr6_4:37239976-37239995 | None:intergenic | 30.0% | |
| ! | TTGGTATTTTCATGACTGTA+TGG | + | chr6_4:37240004-37240023 | Msa0987280:CDS | 30.0% |
| ! | TGGTATTTTCATGACTGTAT+GGG | + | chr6_4:37240005-37240024 | Msa0987280:CDS | 30.0% |
| AAGGATTAAAAAAAGTTGGG+TGG | + | chr6_4:37240247-37240266 | Msa0987280:intron | 30.0% | |
| AGGATTAAAAAAAGTTGGGT+GGG | + | chr6_4:37240248-37240267 | Msa0987280:intron | 30.0% | |
| ! | GATAGTTGCAATTTTACGTA+TGG | + | chr6_4:37240327-37240346 | Msa0987280:intron | 30.0% |
| ! | CTAACTTATTTCAAGTGTTG+TGG | - | chr6_4:37240528-37240547 | None:intergenic | 30.0% |
| ! | AAAGAAGTTTCTTTTGGTGA+TGG | - | chr6_4:37240744-37240763 | None:intergenic | 30.0% |
| ! | GCACTAAAAGAAGTTTCTTT+TGG | - | chr6_4:37240750-37240769 | None:intergenic | 30.0% |
| !!! | GTTGTTTTGATGTACTTTTC+TGG | - | chr6_4:37240796-37240815 | None:intergenic | 30.0% |
| GTATGTTCATATACCTTTGT+TGG | + | chr6_4:37240834-37240853 | Msa0987280:intron | 30.0% | |
| ! | GAAGAGAAATTTTACAAGCT+TGG | - | chr6_4:37240876-37240895 | None:intergenic | 30.0% |
| TTTCAACAGTGATGAAGGAA+AGG | + | chr6_4:37237248-37237267 | Msa0987280:exon | 35.0% | |
| ! | AATAAAAGTGTACCTGTTGG+TGG | - | chr6_4:37237282-37237301 | None:intergenic | 35.0% |
| ! | GTTCATCAATACAGCTTTTC+TGG | + | chr6_4:37237408-37237427 | Msa0987280:intron | 35.0% |
| TCAAACTCATCATCATCTTC+AGG | - | chr6_4:37237497-37237516 | None:intergenic | 35.0% | |
| TTGCCTATATGTGAGATTGA+AGG | + | chr6_4:37237922-37237941 | Msa0987280:intron | 35.0% | |
| TGCCTATATGTGAGATTGAA+GGG | + | chr6_4:37237923-37237942 | Msa0987280:intron | 35.0% | |
| !! | TAGTCTTATGTTGTCAGCAT+GGG | - | chr6_4:37238013-37238032 | None:intergenic | 35.0% |
| !! | TTAGTCTTATGTTGTCAGCA+TGG | - | chr6_4:37238014-37238033 | None:intergenic | 35.0% |
| CTCACATTATCGTCATTAAG+TGG | - | chr6_4:37238353-37238372 | None:intergenic | 35.0% | |
| CACTTAATGACGATAATGTG+AGG | + | chr6_4:37238351-37238370 | Msa0987280:intron | 35.0% | |
| TTTCACCAATAGTATCTCAG+GGG | + | chr6_4:37238436-37238455 | Msa0987280:intron | 35.0% | |
| TTTATCAATAGCGTCGTACT+TGG | + | chr6_4:37238528-37238547 | Msa0987280:intron | 35.0% | |
| AAACACAGCCTATAATTCAC+AGG | - | chr6_4:37238632-37238651 | None:intergenic | 35.0% | |
| TCGTTGTTGTAGTCTCAATT+TGG | + | chr6_4:37238673-37238692 | Msa0987280:intron | 35.0% | |
| CGTTGTTGTAGTCTCAATTT+GGG | + | chr6_4:37238674-37238693 | Msa0987280:intron | 35.0% | |
| ! | TTGTAGTCTCAATTTGGGTT+TGG | + | chr6_4:37238679-37238698 | Msa0987280:intron | 35.0% |
| CAGACTTTGTTCCAAAGTTA+AGG | + | chr6_4:37238874-37238893 | Msa0987280:intron | 35.0% | |
| GACTTCTGTTTCCTTAACTT+TGG | - | chr6_4:37238888-37238907 | None:intergenic | 35.0% | |
| ACATAAACACAAAGGAACTG+AGG | + | chr6_4:37238928-37238947 | Msa0987280:CDS | 35.0% | |
| TCATCAATATCTAGGTCATC+AGG | - | chr6_4:37239106-37239125 | None:intergenic | 35.0% | |
| CAAGCCATTCATCAATATCT+AGG | - | chr6_4:37239114-37239133 | None:intergenic | 35.0% | |
| CTAGATATTGATGAATGGCT+TGG | + | chr6_4:37239112-37239131 | Msa0987280:CDS | 35.0% | |
| !!! | ATATTCTCCCATTTTGGAAC+AGG | - | chr6_4:37239334-37239353 | None:intergenic | 35.0% |
| ! | TTGTTTTCGTTACTGAAGGT+TGG | - | chr6_4:37239381-37239400 | None:intergenic | 35.0% |
| ! | TCCGATGGCTTAAATTTTGA+CGG | - | chr6_4:37239427-37239446 | None:intergenic | 35.0% |
| CAACATGAGCACAAGTTTAT+TGG | + | chr6_4:37239561-37239580 | Msa0987280:CDS | 35.0% | |
| ! | ATTGATGCATCCATGTTTTC+TGG | - | chr6_4:37239694-37239713 | None:intergenic | 35.0% |
| ! | TCTTCTTTTCCGCTTCATTA+AGG | - | chr6_4:37239950-37239969 | None:intergenic | 35.0% |
| AAAGAAGATCTCCGTATGTA+AGG | + | chr6_4:37239962-37239981 | Msa0987280:CDS | 35.0% | |
| AAGGATTGTTAGCAAGCAAA+TGG | + | chr6_4:37239981-37240000 | Msa0987280:CDS | 35.0% | |
| ATTGTTAGCAAGCAAATGGT+TGG | + | chr6_4:37239985-37240004 | Msa0987280:CDS | 35.0% | |
| ACTCTCAATCATCTTGCAAT+TGG | - | chr6_4:37240685-37240704 | None:intergenic | 35.0% | |
| GCAAGATGATTGAGAGTTTA+AGG | + | chr6_4:37240228-37240247 | Msa0987280:intron | 35.0% | |
| AGTTGGGTGGGTAATAAATT+TGG | + | chr6_4:37240260-37240279 | Msa0987280:intron | 35.0% | |
| GTGGGTAATAAATTTGGTTG+TGG | + | chr6_4:37240266-37240285 | Msa0987280:intron | 35.0% | |
| AAATTTGGTTGTGGTGTAAG+TGG | + | chr6_4:37240275-37240294 | Msa0987280:intron | 35.0% | |
| GTGATGACTTGAGTTTGAAA+AGG | - | chr6_4:37240616-37240635 | None:intergenic | 35.0% | |
| AGGGATAAATTTGATTGTGG+TGG | - | chr6_4:37240641-37240660 | None:intergenic | 35.0% | |
| GAGAGGGATAAATTTGATTG+TGG | - | chr6_4:37240644-37240663 | None:intergenic | 35.0% | |
| CATGAAAAAATGTTGGGAGA+GGG | - | chr6_4:37240660-37240679 | None:intergenic | 35.0% | |
| !! | TTCTGGAAAATGAGTTGATC+AGG | - | chr6_4:37240779-37240798 | None:intergenic | 35.0% |
| ! | TCGACATGGTGTCAAATATT+TGG | - | chr6_4:37240928-37240947 | None:intergenic | 35.0% |
| TGAGATTCTGTAAAGTTGTG+TGG | - | chr6_4:37240961-37240980 | None:intergenic | 35.0% | |
| TGTAAGTGGGACAAAGATTG+AGG | - | chr6_4:37237153-37237172 | None:intergenic | 40.0% | |
| TGATGACAGATCCAGACAAA+GGG | - | chr6_4:37237798-37237817 | None:intergenic | 40.0% | |
| ! | TTGATGACAGATCCAGACAA+AGG | - | chr6_4:37237799-37237818 | None:intergenic | 40.0% |
| TACTTGTATACGAGATCGGA+GGG | - | chr6_4:37237827-37237846 | None:intergenic | 40.0% | |
| TTACTTGTATACGAGATCGG+AGG | - | chr6_4:37237828-37237847 | None:intergenic | 40.0% | |
| CTCCCTTCAATCTCACATAT+AGG | - | chr6_4:37237928-37237947 | None:intergenic | 40.0% | |
| ! | AGTCTTATGTTGTCAGCATG+GGG | - | chr6_4:37238012-37238031 | None:intergenic | 40.0% |
| TGTGTTTGCCAACCTTTACT+TGG | - | chr6_4:37238055-37238074 | None:intergenic | 40.0% | |
| ATAAAAAAACTGGTGCTCCC+AGG | - | chr6_4:37238104-37238123 | None:intergenic | 40.0% | |
| GGTCTCAGGTTCTTCAATTT+GGG | - | chr6_4:37238153-37238172 | None:intergenic | 40.0% | |
| CATTTCCCCTGAGATACTAT+TGG | - | chr6_4:37238444-37238463 | None:intergenic | 40.0% | |
| ACAGAATAGTTCAGGGGAAA+GGG | - | chr6_4:37238468-37238487 | None:intergenic | 40.0% | |
| AACAGAATAGTTCAGGGGAA+AGG | - | chr6_4:37238469-37238488 | None:intergenic | 40.0% | |
| CCGAAAACAGAATAGTTCAG+GGG | - | chr6_4:37238474-37238493 | None:intergenic | 40.0% | |
| ! | CCCCTGAACTATTCTGTTTT+CGG | + | chr6_4:37238471-37238490 | Msa0987280:intron | 40.0% |
| GCCGAAAACAGAATAGTTCA+GGG | - | chr6_4:37238475-37238494 | None:intergenic | 40.0% | |
| AGCCGAAAACAGAATAGTTC+AGG | - | chr6_4:37238476-37238495 | None:intergenic | 40.0% | |
| ! | GAACTATTCTGTTTTCGGCT+AGG | + | chr6_4:37238476-37238495 | Msa0987280:intron | 40.0% |
| GTCGTACTTGGATACTAGTT+TGG | + | chr6_4:37238540-37238559 | Msa0987280:intron | 40.0% | |
| ! | CACGAAGAGCACAGTTAATA+TGG | + | chr6_4:37238987-37239006 | Msa0987280:intron | 40.0% |
| AGCGTCTCATATCTGGATTA+TGG | + | chr6_4:37239022-37239041 | Msa0987280:intron | 40.0% | |
| ATGGTGTTTATCTGACTCCT+AGG | + | chr6_4:37239041-37239060 | Msa0987280:intron | 40.0% | |
| TGGTGTTTATCTGACTCCTA+GGG | + | chr6_4:37239042-37239061 | Msa0987280:intron | 40.0% | |
| TCAATATCTAGGTCATCAGG+TGG | - | chr6_4:37239103-37239122 | None:intergenic | 40.0% | |
| GAGATTGTACCCTTAAATGC+TGG | + | chr6_4:37239280-37239299 | Msa0987280:CDS | 40.0% | |
| !! | TAAATTTTGACGGCGATGGA+GGG | - | chr6_4:37239417-37239436 | None:intergenic | 40.0% |
| !! | TTAAATTTTGACGGCGATGG+AGG | - | chr6_4:37239418-37239437 | None:intergenic | 40.0% |
| GCCGTCAAAATTTAAGCCAT+CGG | + | chr6_4:37239423-37239442 | Msa0987280:CDS | 40.0% | |
| GTCAAAATTTAAGCCATCGG+AGG | + | chr6_4:37239426-37239445 | Msa0987280:CDS | 40.0% | |
| ! | TTCGAAAGTGATAGCGACAT+TGG | + | chr6_4:37239478-37239497 | Msa0987280:CDS | 40.0% |
| ! | ATCAATCTTAACCGGTTCAC+TGG | - | chr6_4:37239620-37239639 | None:intergenic | 40.0% |
| ! | GACAGTTTTCTTTTCCGAAG+AGG | + | chr6_4:37239647-37239666 | Msa0987280:CDS | 40.0% |
| ! | CTTTTCCGAAGAGGTTTGAT+TGG | + | chr6_4:37239656-37239675 | Msa0987280:CDS | 40.0% |
| !!! | ATGTTTTCTGGTGGACTTTG+CGG | - | chr6_4:37239682-37239701 | None:intergenic | 40.0% |
| GGATGCATCAATTTCCCAAA+AGG | + | chr6_4:37239702-37239721 | Msa0987280:CDS | 40.0% | |
| ! | AAGCATTCTGGTTAGTGTCT+TGG | - | chr6_4:37239728-37239747 | None:intergenic | 40.0% |
| ACACTAACCAGAATGCTTAG+TGG | + | chr6_4:37239730-37239749 | Msa0987280:CDS | 40.0% | |
| TTCAGATCCACTAAGCATTC+TGG | - | chr6_4:37239740-37239759 | None:intergenic | 40.0% | |
| ! | GAATGCTTAGTGGATCTGAA+AGG | + | chr6_4:37239740-37239759 | Msa0987280:CDS | 40.0% |
| ! | CTTAGTGGATCTGAAAGGAT+CGG | + | chr6_4:37239745-37239764 | Msa0987280:CDS | 40.0% |
| GTCATTTATGGATGACATGC+CGG | + | chr6_4:37239891-37239910 | Msa0987280:CDS | 40.0% | |
| TCATTTATGGATGACATGCC+GGG | + | chr6_4:37239892-37239911 | Msa0987280:CDS | 40.0% | |
| AAGGCTTCAAGGTCAATTTC+AGG | - | chr6_4:37239931-37239950 | None:intergenic | 40.0% | |
| ACCTTGAAGCCTTAATGAAG+CGG | + | chr6_4:37239938-37239957 | Msa0987280:CDS | 40.0% | |
| GCATGAAAAAATGTTGGGAG+AGG | - | chr6_4:37240661-37240680 | None:intergenic | 40.0% | |
| CTTGTGTGAATTGCCAACAA+AGG | - | chr6_4:37240850-37240869 | None:intergenic | 40.0% | |
| CTTTGTTGGCAATTCACACA+AGG | + | chr6_4:37240848-37240867 | Msa0987280:intron | 40.0% | |
| ! | CAAGAGTGGTGATGCGTAAA+TGG | + | chr6_4:37237432-37237451 | Msa0987280:CDS | 45.0% |
| AAGACTAATCTCTGCTCACC+TGG | + | chr6_4:37238026-37238045 | Msa0987280:intron | 45.0% | |
| AGACTAATCTCTGCTCACCT+GGG | + | chr6_4:37238027-37238046 | Msa0987280:intron | 45.0% | |
| ! | AGCTTTATGGGAATCGAACC+TGG | + | chr6_4:37238083-37238102 | Msa0987280:intron | 45.0% |
| GCTTTATGGGAATCGAACCT+GGG | + | chr6_4:37238084-37238103 | Msa0987280:intron | 45.0% | |
| CTCAGGTTCTTCAATTTGGG+TGG | - | chr6_4:37238150-37238169 | None:intergenic | 45.0% | |
| GGGTCTCAGGTTCTTCAATT+TGG | - | chr6_4:37238154-37238173 | None:intergenic | 45.0% | |
| ATGTCAGAACCAACACTGCT+TGG | - | chr6_4:37238295-37238314 | None:intergenic | 45.0% | |
| ! | CTATTCTGTTTTCGGCTAGG+AGG | + | chr6_4:37238479-37238498 | Msa0987280:intron | 45.0% |
| GGGAAGAAAGTCACGGTTTA+TGG | + | chr6_4:37238722-37238741 | Msa0987280:CDS | 45.0% | |
| TCACGGTTTATGGACAACAG+AGG | + | chr6_4:37238732-37238751 | Msa0987280:CDS | 45.0% | |
| GAAGCTCCGTCTGAATCAAA+TGG | + | chr6_4:37238759-37238778 | Msa0987280:CDS | 45.0% | |
| ! | TAGTCGAAGCGTCTCATATC+TGG | + | chr6_4:37239015-37239034 | Msa0987280:intron | 45.0% |
| TGACTCCTAGGGTATGTGTT+GGG | + | chr6_4:37239053-37239072 | Msa0987280:intron | 45.0% | |
| TGTGTTGGGACATGGAATGT+TGG | + | chr6_4:37239067-37239086 | Msa0987280:CDS | 45.0% | |
| ACACTCGTCCTGTTCCAAAA+TGG | + | chr6_4:37239323-37239342 | Msa0987280:CDS | 45.0% | |
| CACTCGTCCTGTTCCAAAAT+GGG | + | chr6_4:37239324-37239343 | Msa0987280:CDS | 45.0% | |
| !! | GGCTTAAATTTTGACGGCGA+TGG | - | chr6_4:37239421-37239440 | None:intergenic | 45.0% |
| GCAAAGTCCACCAGAAAACA+TGG | + | chr6_4:37239681-37239700 | Msa0987280:CDS | 45.0% | |
| ! | GATGCATCCATGTTTTCTGG+TGG | - | chr6_4:37239691-37239710 | None:intergenic | 45.0% |
| !! | GGTTAGTGTCTTGGCCTTTT+GGG | - | chr6_4:37239719-37239738 | None:intergenic | 45.0% |
| !! | TGGTTAGTGTCTTGGCCTTT+TGG | - | chr6_4:37239720-37239739 | None:intergenic | 45.0% |
| ! | TCTGCTCTCTCAGAGAGTAT+TGG | + | chr6_4:37239795-37239814 | Msa0987280:CDS | 45.0% |
| TCCGCTTCATTAAGGCTTCA+AGG | - | chr6_4:37239942-37239961 | None:intergenic | 45.0% | |
| TCATGACTGTATGGGTTCGT+CGG | + | chr6_4:37240013-37240032 | Msa0987280:CDS | 45.0% | |
| AAGGACACAGAACCACCAAC+AGG | + | chr6_4:37237267-37237286 | Msa0987280:CDS | 50.0% | |
| ! | ACAGCTTTTCTGGGCAAGAG+TGG | + | chr6_4:37237418-37237437 | Msa0987280:intron | 50.0% |
| ATCAAGTTCGGCCCTTTGTC+TGG | + | chr6_4:37237784-37237803 | Msa0987280:intron | 50.0% | |
| GACTAATCTCTGCTCACCTG+GGG | + | chr6_4:37238028-37238047 | Msa0987280:intron | 50.0% | |
| TTGAAGAACCTGAGACCCTG+AGG | + | chr6_4:37238156-37238175 | Msa0987280:intron | 50.0% | |
| CAACACTGCTTGGCCTAATG+GGG | - | chr6_4:37238285-37238304 | None:intergenic | 50.0% | |
| CCAACACTGCTTGGCCTAAT+GGG | - | chr6_4:37238286-37238305 | None:intergenic | 50.0% | |
| ACCAACACTGCTTGGCCTAA+TGG | - | chr6_4:37238287-37238306 | None:intergenic | 50.0% | |
| GTGTGTGATGCTTGCAGTGT+GGG | + | chr6_4:37238701-37238720 | Msa0987280:intron | 50.0% | |
| TGTGTGATGCTTGCAGTGTG+GGG | + | chr6_4:37238702-37238721 | Msa0987280:intron | 50.0% | |
| CAGTGTGGGGAAGAAAGTCA+CGG | + | chr6_4:37238715-37238734 | Msa0987280:intron | 50.0% | |
| CTGACTCCTAGGGTATGTGT+TGG | + | chr6_4:37239052-37239071 | Msa0987280:intron | 50.0% | |
| CATGTCCCAACACATACCCT+AGG | - | chr6_4:37239061-37239080 | None:intergenic | 50.0% | |
| CTAGGGTATGTGTTGGGACA+TGG | + | chr6_4:37239059-37239078 | Msa0987280:intron | 50.0% | |
| GTTGGGACATGGAATGTTGG+AGG | + | chr6_4:37239070-37239089 | Msa0987280:CDS | 50.0% | |
| CCAGCTGACATCTATGTCCT+CGG | + | chr6_4:37239145-37239164 | Msa0987280:CDS | 50.0% | |
| CAGCTGACATCTATGTCCTC+GGG | + | chr6_4:37239146-37239165 | Msa0987280:CDS | 50.0% | |
| TCCTCGGGTAAGTTCTTCAC+CGG | + | chr6_4:37239161-37239180 | Msa0987280:intron | 50.0% | |
| GAAGTATGCTCGGCAACAAC+CGG | - | chr6_4:37239183-37239202 | None:intergenic | 50.0% | |
| ATATCAGGGTCATCCTCCGA+TGG | - | chr6_4:37239442-37239461 | None:intergenic | 50.0% | |
| ! | AAGTGATAGCGACATTGGCG+AGG | + | chr6_4:37239483-37239502 | Msa0987280:CDS | 50.0% |
| TGGCGAGGAAGTTCATCCTT+TGG | + | chr6_4:37239498-37239517 | Msa0987280:CDS | 50.0% | |
| ACTGGCACTATCAGCAACGT+CGG | - | chr6_4:37239590-37239609 | None:intergenic | 50.0% | |
| CAGTGTCAACACCAGTGAAC+CGG | + | chr6_4:37239606-37239625 | Msa0987280:CDS | 50.0% | |
| TGCGGCCAATCAAACCTCTT+CGG | - | chr6_4:37239664-37239683 | None:intergenic | 50.0% | |
| !! | CTGAAAGGATCGGTTTGAGC+TGG | + | chr6_4:37239755-37239774 | Msa0987280:CDS | 50.0% |
| ! | CTCTGAGAGAGCAGATGTAG+CGG | - | chr6_4:37239790-37239809 | None:intergenic | 50.0% |
| TATGGATGACATGCCGGGAA+TGG | + | chr6_4:37239897-37239916 | Msa0987280:CDS | 50.0% | |
| ATGGATGACATGCCGGGAAT+GGG | + | chr6_4:37239898-37239917 | Msa0987280:CDS | 50.0% | |
| TCAGGAAGCAAACCCATTCC+CGG | - | chr6_4:37239913-37239932 | None:intergenic | 50.0% | |
| CTCACCTGGGGACCAAGTAA+AGG | + | chr6_4:37238040-37238059 | Msa0987280:intron | 55.0% | |
| CCAACCTTTACTTGGTCCCC+AGG | - | chr6_4:37238047-37238066 | None:intergenic | 55.0% | |
| CCTGGGGACCAAGTAAAGGT+TGG | + | chr6_4:37238044-37238063 | Msa0987280:intron | 55.0% | |
| AAGAACCTGAGACCCTGAGG+AGG | + | chr6_4:37238159-37238178 | Msa0987280:intron | 55.0% | |
| ! | TAGGAGTGTGCTCCTCCTCA+GGG | - | chr6_4:37238174-37238193 | None:intergenic | 55.0% |
| !! | TGGTCTGGTGGTGTTGGCTT+GGG | - | chr6_4:37238208-37238227 | None:intergenic | 55.0% |
| !! | TTGGTCTGGTGGTGTTGGCT+TGG | - | chr6_4:37238209-37238228 | None:intergenic | 55.0% |
| !! | TTGGGTTGGTCTGGTGGTGT+TGG | - | chr6_4:37238214-37238233 | None:intergenic | 55.0% |
| ACCACCAGACCAACCCAAGT+GGG | + | chr6_4:37238216-37238235 | Msa0987280:intron | 55.0% | |
| !! | AGAACCCACTTGGGTTGGTC+TGG | - | chr6_4:37238223-37238242 | None:intergenic | 55.0% |
| ! | AGACCAACCCAAGTGGGTTC+TGG | + | chr6_4:37238222-37238241 | Msa0987280:intron | 55.0% |
| ! | GACCAACCCAAGTGGGTTCT+GGG | + | chr6_4:37238223-37238242 | Msa0987280:intron | 55.0% |
| ! | AGGTTGATCCCTGAGTCCCA+GGG | + | chr6_4:37238252-37238271 | Msa0987280:intron | 55.0% |
| CTAATGGGGTAACCTCCCCT+GGG | - | chr6_4:37238271-37238290 | None:intergenic | 55.0% | |
| CCCATTAGGCCAAGCAGTGT+TGG | + | chr6_4:37238283-37238302 | Msa0987280:intron | 55.0% | |
| GGTGTGTGATGCTTGCAGTG+TGG | + | chr6_4:37238700-37238719 | Msa0987280:intron | 55.0% | |
| CCGAGGACATAGATGTCAGC+TGG | - | chr6_4:37239148-37239167 | None:intergenic | 55.0% | |
| ACCGGTGAAGAACTTACCCG+AGG | - | chr6_4:37239165-37239184 | None:intergenic | 55.0% | |
| !! | CGGTTCACTGGTGTTGACAC+TGG | - | chr6_4:37239608-37239627 | None:intergenic | 55.0% |
| !! | AAGGATCGGTTTGAGCTGGC+CGG | + | chr6_4:37239759-37239778 | Msa0987280:CDS | 55.0% |
| TGAGAGAGCAGATGTAGCGG+AGG | - | chr6_4:37239787-37239806 | None:intergenic | 55.0% | |
| GTGGCTCTTTCTGCTCGACA+TGG | - | chr6_4:37240942-37240961 | None:intergenic | 55.0% | |
| ! | GGACCATCGCCGACTACACA+CGG | + | chr6_4:37237981-37238000 | Msa0987280:intron | 60.0% |
| ACTCCGTGTGTAGTCGGCGA+TGG | - | chr6_4:37237987-37238006 | None:intergenic | 60.0% | |
| GGGGACACTCCGTGTGTAGT+CGG | - | chr6_4:37237993-37238012 | None:intergenic | 60.0% | |
| ! | CTAGGAGTGTGCTCCTCCTC+AGG | - | chr6_4:37238175-37238194 | None:intergenic | 60.0% |
| GAGCACACTCCTAGAGTCCC+AGG | + | chr6_4:37238181-37238200 | Msa0987280:intron | 60.0% | |
| !! | GTGGTGTTGGCTTGGGACCT+GGG | - | chr6_4:37238201-37238220 | None:intergenic | 60.0% |
| CACCACCAGACCAACCCAAG+TGG | + | chr6_4:37238215-37238234 | Msa0987280:intron | 60.0% | |
| !! | ACCCACTTGGGTTGGTCTGG+TGG | - | chr6_4:37238220-37238239 | None:intergenic | 60.0% |
| CTCCCAGAACCCACTTGGGT+TGG | - | chr6_4:37238228-37238247 | None:intergenic | 60.0% | |
| GGTGCTCCCAGAACCCACTT+GGG | - | chr6_4:37238232-37238251 | None:intergenic | 60.0% | |
| TGGTGCTCCCAGAACCCACT+TGG | - | chr6_4:37238233-37238252 | None:intergenic | 60.0% | |
| !! | AAGTGGGTTCTGGGAGCACC+AGG | + | chr6_4:37238232-37238251 | Msa0987280:intron | 60.0% |
| CTGGGACTCAGGGATCAACC+TGG | - | chr6_4:37238253-37238272 | None:intergenic | 60.0% | |
| !! | CAGGTTGATCCCTGAGTCCC+AGG | + | chr6_4:37238251-37238270 | Msa0987280:intron | 60.0% |
| GGTTGATCCCTGAGTCCCAG+GGG | + | chr6_4:37238253-37238272 | Msa0987280:intron | 60.0% | |
| GTAACCTCCCCTGGGACTCA+GGG | - | chr6_4:37238263-37238282 | None:intergenic | 60.0% | |
| CCTAATGGGGTAACCTCCCC+TGG | - | chr6_4:37238272-37238291 | None:intergenic | 60.0% | |
| CCAGGGGAGGTTACCCCATT+AGG | + | chr6_4:37238269-37238288 | Msa0987280:intron | 60.0% | |
| ! | AGCAGATGTAGCGGAGGCTC+CGG | - | chr6_4:37239781-37239800 | None:intergenic | 60.0% |
| GTGCTCCTCCTCAGGGTCTC+AGG | - | chr6_4:37238167-37238186 | None:intergenic | 65.0% | |
| GGCTTGGGACCTGGGACTCT+AGG | - | chr6_4:37238193-37238212 | None:intergenic | 65.0% | |
| !! | GGTGGTGTTGGCTTGGGACC+TGG | - | chr6_4:37238202-37238221 | None:intergenic | 65.0% |
| TGATCCCTGAGTCCCAGGGG+AGG | + | chr6_4:37238256-37238275 | Msa0987280:intron | 65.0% | |
| GGTAACCTCCCCTGGGACTC+AGG | - | chr6_4:37238264-37238283 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 37237132 | 37240995 | 37237132 | ID=Msa0987280;Name=Msa0987280 |
| chr6_4 | mRNA | 37237132 | 37240995 | 37237132 | ID=Msa0987280-mRNA-1;Parent=Msa0987280;Name=Msa0987280-mRNA-1;_AED=0.12;_eAED=0.12;_QI=127|0.66|0.57|0.85|1|1|7|0|427 |
| chr6_4 | exon | 37237132 | 37237288 | 37237132 | ID=Msa0987280-mRNA-1:exon:9327;Parent=Msa0987280-mRNA-1 |
| chr6_4 | exon | 37237422 | 37237551 | 37237422 | ID=Msa0987280-mRNA-1:exon:9328;Parent=Msa0987280-mRNA-1 |
| chr6_4 | exon | 37238718 | 37238780 | 37238718 | ID=Msa0987280-mRNA-1:exon:9329;Parent=Msa0987280-mRNA-1 |
| chr6_4 | exon | 37238877 | 37238949 | 37238877 | ID=Msa0987280-mRNA-1:exon:9330;Parent=Msa0987280-mRNA-1 |
| chr6_4 | exon | 37239063 | 37239167 | 37239063 | ID=Msa0987280-mRNA-1:exon:9331;Parent=Msa0987280-mRNA-1 |
| chr6_4 | exon | 37239273 | 37240065 | 37239273 | ID=Msa0987280-mRNA-1:exon:9332;Parent=Msa0987280-mRNA-1 |
| chr6_4 | exon | 37240906 | 37240995 | 37240906 | ID=Msa0987280-mRNA-1:exon:9333;Parent=Msa0987280-mRNA-1 |
| chr6_4 | five_prime_UTR | 37237132 | 37237258 | 37237132 | ID=Msa0987280-mRNA-1:five_prime_utr;Parent=Msa0987280-mRNA-1 |
| chr6_4 | CDS | 37237259 | 37237288 | 37237259 | ID=Msa0987280-mRNA-1:cds;Parent=Msa0987280-mRNA-1 |
| chr6_4 | CDS | 37237422 | 37237551 | 37237422 | ID=Msa0987280-mRNA-1:cds;Parent=Msa0987280-mRNA-1 |
| chr6_4 | CDS | 37238718 | 37238780 | 37238718 | ID=Msa0987280-mRNA-1:cds;Parent=Msa0987280-mRNA-1 |
| chr6_4 | CDS | 37238877 | 37238949 | 37238877 | ID=Msa0987280-mRNA-1:cds;Parent=Msa0987280-mRNA-1 |
| chr6_4 | CDS | 37239063 | 37239167 | 37239063 | ID=Msa0987280-mRNA-1:cds;Parent=Msa0987280-mRNA-1 |
| chr6_4 | CDS | 37239273 | 37240065 | 37239273 | ID=Msa0987280-mRNA-1:cds;Parent=Msa0987280-mRNA-1 |
| chr6_4 | CDS | 37240906 | 37240995 | 37240906 | ID=Msa0987280-mRNA-1:cds;Parent=Msa0987280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
