AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0950520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0950520 MtrunA17_Chr6g0466801 96.970 627 19 0 1 627 1 627 0.0 1258
Msa0950520 MtrunA17_Chr1g0201271 65.252 636 203 6 1 626 1 628 0.0 818
Msa0950520 MtrunA17_Chr4g0054951 40.348 632 291 10 1 617 1 561 2.59e-157 464
Msa0950520 MtrunA17_Chr5g0400311 41.810 641 316 12 1 612 1 613 8.67e-157 464
Msa0950520 MtrunA17_Chr4g0054941 39.839 620 290 14 10 614 7 558 1.43e-146 436
Msa0950520 MtrunA17_Chr5g0394901 56.322 261 107 4 366 620 351 610 6.15e-94 301
Msa0950520 MtrunA17_Chr5g0394901 43.925 107 60 0 79 185 75 181 4.25e-22 100
Msa0950520 MtrunA17_Chr1g0205121 56.274 263 102 6 367 620 313 571 6.48e-93 298
Msa0950520 MtrunA17_Chr1g0205121 34.054 185 116 2 1 185 1 179 4.78e-26 112
Msa0950520 MtrunA17_Chr7g0260081 54.198 262 110 4 367 620 286 545 1.79e-92 296
Msa0950520 MtrunA17_Chr7g0260081 32.653 196 121 2 3 198 4 188 1.21e-24 108
Msa0950520 MtrunA17_Chr1g0185281 52.555 274 120 4 355 620 274 545 3.29e-92 295
Msa0950520 MtrunA17_Chr1g0185281 35.096 208 111 6 1 204 1 188 4.73e-26 112
Msa0950520 MtrunA17_Chr8g0355021 54.000 250 104 4 369 609 227 474 1.69e-84 273
Msa0950520 MtrunA17_Chr8g0355021 38.739 111 66 1 57 167 23 131 7.18e-17 84.0
Msa0950520 MtrunA17_Chr6g0479511 48.696 230 114 2 372 597 155 384 1.63e-78 254
Msa0950520 MtrunA17_Chr6g0479511 27.099 262 149 7 71 316 21 256 2.09e-19 90.9
Msa0950520 MtrunA17_Chr8g0382571 50.000 264 121 5 366 620 210 471 7.49e-78 255
Msa0950520 MtrunA17_Chr8g0382571 55.556 72 32 0 96 167 37 108 1.19e-17 86.3
Msa0950520 MtrunA17_Chr8g0375751 51.230 244 114 2 372 610 149 392 1.03e-77 253
Msa0950520 MtrunA17_Chr8g0375751 52.113 71 33 1 99 168 61 131 3.11e-15 78.2
Msa0950520 MtrunA17_Chr7g0263111 52.675 243 103 5 372 610 174 408 1.83e-77 253
Msa0950520 MtrunA17_Chr7g0263111 56.410 78 34 0 90 167 81 158 8.87e-22 99.0
Msa0950520 MtrunA17_Chr1g0165011 51.899 237 108 2 372 602 180 416 2.05e-77 253
Msa0950520 MtrunA17_Chr1g0165011 40.367 109 53 3 94 201 60 157 9.50e-16 80.1
Msa0950520 MtrunA17_Chr6g0452181 48.178 247 118 6 366 602 160 406 1.12e-66 224
Msa0950520 MtrunA17_Chr6g0452181 51.948 77 35 1 93 167 51 127 4.30e-17 84.3
Msa0950520 MtrunA17_Chr1g0189231 29.740 269 145 8 367 595 606 870 4.23e-30 126
Msa0950520 MtrunA17_Chr6g0474691 84.091 44 7 0 476 519 22 65 1.20e-16 75.1
Msa0950520 MtrunA17_Chr1g0154491 33.636 220 124 10 388 597 128 335 2.53e-16 80.9
Msa0950520 MtrunA17_Chr6g0488541 43.011 93 51 2 473 563 805 897 1.65e-15 80.5
Msa0950520 MtrunA17_Chr6g0488541 31.429 105 69 2 369 472 643 745 4.27e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0950520 AT1G71710.2 57.230 657 246 9 1 624 1 655 0.0 714
Msa0950520 AT1G71710.1 57.230 657 246 9 1 624 10 664 0.0 714
Msa0950520 AT1G34120.1 52.443 614 234 8 10 619 27 586 0.0 578
Msa0950520 AT1G34120.2 52.104 618 234 9 10 619 27 590 0.0 575
Msa0950520 AT1G34120.3 51.942 618 234 10 10 619 27 589 0.0 568
Msa0950520 AT1G34120.5 51.477 474 186 6 150 619 2 435 6.90e-153 448
Msa0950520 AT4G18010.1 39.880 667 314 15 1 612 1 635 6.25e-149 445
Msa0950520 AT1G34120.4 50.099 503 194 7 10 509 27 475 3.62e-145 429
Msa0950520 AT4G18010.2 38.336 613 291 15 1 558 1 581 2.09e-124 380
Msa0950520 AT3G63240.2 55.094 265 113 3 362 620 271 535 9.25e-94 299
Msa0950520 AT3G63240.2 35.047 214 109 5 1 210 1 188 2.23e-25 110
Msa0950520 AT3G63240.1 55.094 265 113 3 362 620 271 535 9.25e-94 299
Msa0950520 AT3G63240.1 35.047 214 109 5 1 210 1 188 2.23e-25 110
Msa0950520 AT2G32010.2 55.000 260 110 4 367 620 324 582 1.14e-91 295
Msa0950520 AT2G32010.2 36.612 183 101 6 17 197 17 186 9.40e-25 109
Msa0950520 AT2G32010.1 55.000 260 110 4 367 620 324 582 1.14e-91 295
Msa0950520 AT2G32010.1 36.612 183 101 6 17 197 17 186 9.40e-25 109
Msa0950520 AT2G32010.4 55.000 260 110 4 367 620 324 582 1.14e-91 295
Msa0950520 AT2G32010.4 36.612 183 101 6 17 197 17 186 9.40e-25 109
Msa0950520 AT2G32010.3 55.000 260 110 4 367 620 324 582 1.14e-91 295
Msa0950520 AT2G32010.3 36.612 183 101 6 17 197 17 186 9.40e-25 109
Msa0950520 AT1G05470.2 54.615 260 111 4 367 620 347 605 1.24e-91 296
Msa0950520 AT1G05470.2 38.350 206 101 8 1 197 1 189 4.40e-28 119
Msa0950520 AT1G05470.1 54.615 260 111 4 367 620 347 605 1.24e-91 296
Msa0950520 AT1G05470.1 38.350 206 101 8 1 197 1 189 4.40e-28 119
Msa0950520 AT2G37440.2 56.710 231 96 3 369 596 113 342 3.11e-80 259
Msa0950520 AT2G37440.2 42.593 108 42 2 102 190 3 109 5.69e-17 84.0
Msa0950520 AT5G04980.4 51.210 248 114 3 357 597 145 392 9.44e-80 258
Msa0950520 AT2G37440.1 56.710 231 96 3 369 596 194 423 1.12e-79 260
Msa0950520 AT2G37440.1 36.478 159 80 2 13 167 11 152 5.61e-23 103
Msa0950520 AT2G37440.3 56.710 231 96 3 369 596 194 423 1.12e-79 260
Msa0950520 AT2G37440.3 36.478 159 80 2 13 167 11 152 5.61e-23 103
Msa0950520 AT5G65090.2 51.575 254 115 4 356 602 186 438 1.43e-79 259
Msa0950520 AT5G65090.2 52.055 73 35 0 96 168 8 80 5.26e-18 87.8
Msa0950520 AT5G04980.1 51.210 248 114 3 357 597 180 427 4.07e-79 258
Msa0950520 AT5G04980.1 50.725 69 34 0 96 164 7 75 1.84e-14 76.6
Msa0950520 AT5G04980.3 51.210 248 114 3 357 597 180 427 4.07e-79 258
Msa0950520 AT5G04980.3 50.725 69 34 0 96 164 7 75 1.84e-14 76.6
Msa0950520 AT5G04980.2 51.210 248 114 3 357 597 209 456 5.74e-79 258
Msa0950520 AT5G04980.2 50.725 69 34 0 96 164 36 104 1.57e-14 77.0
Msa0950520 AT5G65090.3 51.575 254 115 4 356 602 249 501 5.97e-79 260
Msa0950520 AT5G65090.3 52.055 73 35 0 96 168 71 143 7.35e-18 87.8
Msa0950520 AT5G65090.1 51.575 254 115 4 356 602 249 501 5.97e-79 260
Msa0950520 AT5G65090.1 52.055 73 35 0 96 168 71 143 7.35e-18 87.8
Msa0950520 AT2G01900.1 51.639 244 114 2 372 611 155 398 6.79e-77 251
Msa0950520 AT2G01900.1 43.478 92 50 2 82 171 42 133 2.06e-15 79.3
Msa0950520 AT2G01900.3 51.639 244 114 2 372 611 163 406 9.54e-77 251
Msa0950520 AT2G01900.3 43.478 92 50 2 82 171 50 141 2.09e-15 79.3
Msa0950520 AT2G01900.2 50.206 243 110 2 372 611 155 389 9.25e-74 243
Msa0950520 AT2G01900.2 43.478 92 50 2 82 171 42 133 2.09e-15 79.3
Msa0950520 AT1G65580.1 30.403 273 143 8 367 595 617 886 6.45e-31 129
Msa0950520 AT1G65580.2 30.403 273 143 8 367 595 351 620 6.73e-31 129
Msa0950520 AT2G43900.2 29.197 274 149 6 366 596 655 926 8.81e-31 129
Msa0950520 AT2G43900.1 29.197 274 149 6 366 596 655 926 1.03e-30 129
Msa0950520 AT2G31830.2 31.641 256 139 7 366 593 658 905 5.90e-30 127
Msa0950520 AT2G31830.1 31.641 256 139 7 366 593 658 905 6.51e-30 126
Msa0950520 AT2G31830.3 30.859 256 141 6 366 593 658 905 9.05e-30 125
Msa0950520 AT1G05630.2 30.973 226 126 4 366 563 649 872 1.14e-28 122
Msa0950520 AT1G05630.3 30.973 226 126 5 366 563 649 872 1.16e-28 122
Msa0950520 AT1G47510.4 36.082 194 101 8 405 589 84 263 4.10e-22 97.1
Msa0950520 AT1G47510.1 36.082 194 101 8 405 589 146 325 1.62e-21 96.7
Msa0950520 AT1G05630.1 43.820 89 48 2 477 563 818 906 4.45e-14 76.6
Msa0950520 AT1G05630.1 31.915 94 62 1 366 459 649 740 1.12e-11 68.6

Find 144 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTCTTTCAAGTCATTTA+TGG 0.108818 6_3:-38880477 Msa0950520:CDS
CGAATAATATTCTCCCATTT+TGG 0.130725 6_3:+38881019 None:intergenic
TTTCATTCACCTTCTATTAT+TGG 0.150910 6_3:-38879908 Msa0950520:CDS
CAACATGAGCACAAGTTTAT+TGG 0.164558 6_3:-38880795 Msa0950520:CDS
AATATTTCTTCTTCAATATC+AGG 0.204515 6_3:+38880902 None:intergenic
GCTCCTTGATATTGATATTC+TGG 0.214730 6_3:+38877630 None:intergenic
AACTGTAGGCGTCGGCATTA+TGG 0.222812 6_3:-38880285 Msa0950520:CDS
GGGAAGAAAGTCACGGTTTA+TGG 0.237843 6_3:-38881632 Msa0950520:CDS
TGGTTAGTGTCTTGGCCTTT+TGG 0.238468 6_3:+38880639 None:intergenic
TTCAGATCCACTAAGCATTC+TGG 0.288245 6_3:+38880619 None:intergenic
TTATTTGCAGAAGAATAATT+TGG 0.290513 6_3:-38879767 Msa0950520:intron
AAGGCTTCAAGGTCAATTTC+AGG 0.297924 6_3:+38880428 None:intergenic
TCTCTGCATTAGTGAATGTT+AGG 0.302743 6_3:+38878145 None:intergenic
ACACTCGTCCTGTTCCAAAA+TGG 0.312191 6_3:-38881033 Msa0950520:CDS
CAGACTTTGTTCCAAAGTTA+AGG 0.328739 6_3:-38881480 Msa0950520:CDS
CAAGAGTGGTGATGCGTAAA+TGG 0.340246 6_3:-38882855 Msa0950520:CDS
CAAAATGGGAGAATATTATT+CGG 0.345468 6_3:-38881018 Msa0950520:CDS
CCATTAAAAGTTTAATAAGT+TGG 0.348825 6_3:-38878107 Msa0950520:CDS
AAGAATCTATATTTAGTTGT+TGG 0.349725 6_3:+38877571 None:intergenic
ACTGTAGGCGTCGGCATTAT+GGG 0.362898 6_3:-38880284 Msa0950520:CDS
GACTTCTGTTTCCTTAACTT+TGG 0.374912 6_3:+38881469 None:intergenic
TTCACAATGTTGATATTGTT+AGG 0.379373 6_3:+38877302 None:intergenic
TGGAACAGAATTTGTGTAAG+TGG 0.379983 6_3:+38883123 None:intergenic
TTGAATGATTTAAAAGAAGT+TGG 0.383279 6_3:+38880533 None:intergenic
TCAAACTCATCATCATCTTC+AGG 0.386739 6_3:+38882793 None:intergenic
AGCAGATGTAGCGGAGGCTC+CGG 0.388719 6_3:+38880578 None:intergenic
TGGCGAGGAAGTTCATCCTT+TGG 0.390925 6_3:-38880858 Msa0950520:CDS
TCCGCTTCATTAAGGCTTCA+AGG 0.398173 6_3:+38880417 None:intergenic
ATGCGTAAATGGCTTAATAT+TGG 0.402138 6_3:-38882844 Msa0950520:CDS
TGTGATCGTGTTCTTTCATA+TGG 0.402435 6_3:-38878288 Msa0950520:CDS
TCAGGAAGCAAACCCATTCC+CGG 0.402929 6_3:+38880446 None:intergenic
AACTATTTCCACTTTAAAAG+TGG 0.415417 6_3:+38877514 None:intergenic
AAAATATTACCAGCATTTAA+GGG 0.422970 6_3:+38881067 None:intergenic
CACTCGTCCTGTTCCAAAAT+GGG 0.423061 6_3:-38881032 Msa0950520:CDS
AAGCATTCTGGTTAGTGTCT+TGG 0.423661 6_3:+38880631 None:intergenic
TCTATTATTGGACTTCCTAA+AGG 0.428272 6_3:-38879896 Msa0950520:CDS
TCGTGATCGAGGATTCCTTT+AGG 0.429042 6_3:+38879881 None:intergenic
TTTAGGTTCAAATGTTTGAA+TGG 0.429400 6_3:-38877466 Msa0950520:three_prime_UTR
ACAAGTACACACATATATAT+AGG 0.431036 6_3:+38877437 None:intergenic
CAATGTTGATATTGTTAGGT+TGG 0.434098 6_3:+38877306 None:intergenic
ATGGATGACATGCCGGGAAT+GGG 0.438439 6_3:-38880458 Msa0950520:CDS
ACGATATATGTCGCAGTCAC+GGG 0.442858 6_3:+38878207 None:intergenic
TATGGATGACATGCCGGGAA+TGG 0.445066 6_3:-38880459 Msa0950520:CDS
GTCATTTATGGATGACATGC+CGG 0.447416 6_3:-38880465 Msa0950520:CDS
TGGTGTACGCTTTGAAGCCT+TGG 0.447683 6_3:+38878720 None:intergenic
TTAGGAAGTCCAATAATAGA+AGG 0.448076 6_3:+38879899 None:intergenic
TGCAGAAGAATAATTTGGTT+AGG 0.452884 6_3:-38879762 Msa0950520:intron
TGCGGCCAATCAAACCTCTT+CGG 0.454658 6_3:+38880695 None:intergenic
TCATCAATATCTAGGTCATC+AGG 0.457091 6_3:+38881253 None:intergenic
ATCTCATATTTATACGTTGG+TGG 0.461580 6_3:+38878772 None:intergenic
AAAGAAGATCTCCGTATGTA+AGG 0.461784 6_3:-38880394 Msa0950520:CDS
GTTGCTTGTCACTTCGACTC+CGG 0.467104 6_3:+38877386 None:intergenic
TAAACATATTCATAATTTGA+AGG 0.468582 6_3:-38880312 Msa0950520:CDS
CTAGGGTATGTGTCGGGACA+TGG 0.468647 6_3:-38881297 Msa0950520:intron
GGTGTACGCTTTGAAGCCTT+GGG 0.469119 6_3:+38878721 None:intergenic
GAAGCTCCGTCTGAATCAAA+TGG 0.471758 6_3:-38881595 Msa0950520:intron
TGTGTGTACTTGTGTGATTA+AGG 0.472951 6_3:-38877427 Msa0950520:three_prime_UTR
ATTTGCACGCATCTTACCTC+TGG 0.473781 6_3:-38879995 Msa0950520:CDS
GCATCTTACCTCTGGTGAAA+AGG 0.476309 6_3:-38879987 Msa0950520:CDS
ACACTAACCAGAATGCTTAG+TGG 0.476526 6_3:-38880626 Msa0950520:CDS
AAAATGGGAGAATATTATTC+GGG 0.480164 6_3:-38881017 Msa0950520:CDS
AACGATATATGTCGCAGTCA+CGG 0.481157 6_3:+38878206 None:intergenic
AAGGATTGTTAGCAAGCAAA+TGG 0.486518 6_3:-38880375 Msa0950520:CDS
CGAGCCATTCATCAATATCT+AGG 0.487163 6_3:+38881245 None:intergenic
ATCAATCTTAACCGGTTCAC+TGG 0.488190 6_3:+38880739 None:intergenic
ACGGACCGAGCTCAAAATAT+CGG 0.491707 6_3:-38878238 Msa0950520:CDS
CAGTGTCAACACCAGTGAAC+CGG 0.496890 6_3:-38880750 Msa0950520:CDS
AATTTGAAGGTTTCAACTGT+AGG 0.503907 6_3:-38880299 Msa0950520:CDS
ATTTGTGATGTAAATACTAC+GGG 0.506109 6_3:-38880821 Msa0950520:CDS
CTCTGCATTAGTGAATGTTA+GGG 0.506426 6_3:+38878146 None:intergenic
TATTTGTGATGTAAATACTA+CGG 0.509817 6_3:-38880822 Msa0950520:CDS
ATATTTCTTCTTCAATATCA+GGG 0.510823 6_3:+38880903 None:intergenic
GGATGCATCAATTTCCCAAA+AGG 0.512360 6_3:-38880654 Msa0950520:CDS
TTTCCAGAATATCAATATCA+AGG 0.513090 6_3:-38877633 Msa0950520:three_prime_UTR
TCTGCTCTCTCAGAGAGTAT+TGG 0.518854 6_3:-38880561 Msa0950520:CDS
TCTCATATTTATACGTTGGT+GGG 0.519095 6_3:+38878773 None:intergenic
CCACATTTGATAAGTTGATA+CGG 0.521412 6_3:+38879727 None:intergenic
CCAGCTGACATCTATGTCCT+CGG 0.521688 6_3:-38881211 Msa0950520:CDS
AGGGCTCGCTGTAGCTTCCT+AGG 0.521735 6_3:+38878165 None:intergenic
TCATTTATGGATGACATGCC+GGG 0.524357 6_3:-38880464 Msa0950520:CDS
TCATGACTGTATGGGTTCGT+CGG 0.526788 6_3:-38880343 Msa0950520:CDS
ACCTTGAAGCCTTAATGAAG+CGG 0.527269 6_3:-38880418 Msa0950520:CDS
GGAACAGAATTTGTGTAAGT+GGG 0.528342 6_3:+38883124 None:intergenic
GCATTTGGAGGATGGTCAGA+AGG 0.530063 6_3:-38878808 Msa0950520:CDS
TTCGAAAGTGATAGCGACAT+TGG 0.530439 6_3:-38880878 Msa0950520:CDS
AAGGATCGGTTTGAGCTGGC+CGG 0.535075 6_3:-38880597 Msa0950520:CDS
CAGCTGACATCTATGTCCTC+GGG 0.538007 6_3:-38881210 Msa0950520:intron
GCAAAGTCCACCAGAAAACA+TGG 0.538223 6_3:-38880675 Msa0950520:CDS
CGGTTCACTGGTGTTGACAC+TGG 0.542450 6_3:+38880751 None:intergenic
TTAATCTCATATTTATACGT+TGG 0.545859 6_3:+38878769 None:intergenic
ATTGTTAGCAAGCAAATGGT+TGG 0.547014 6_3:-38880371 Msa0950520:CDS
GAGATTGTACCCTTAAATGC+TGG 0.547310 6_3:-38881076 Msa0950520:CDS
ATGTTACCATTTGATTCAGA+CGG 0.548134 6_3:+38881589 None:intergenic
TCGTGTTCTTTCATATGGCA+AGG 0.548312 6_3:-38878283 Msa0950520:CDS
TTTCAACAGTGATGAAGGAA+AGG 0.551621 6_3:-38883038 Msa0950520:exon
AAAACGGTGCATTTGGAGGA+TGG 0.552077 6_3:-38878816 Msa0950520:CDS
AAGGACACAGAATCACCAAC+AGG 0.552309 6_3:-38883019 Msa0950520:intron
CTGAAAGGATCGGTTTGAGC+TGG 0.554541 6_3:-38880601 Msa0950520:CDS
CCGAGGACATAGATGTCAGC+TGG 0.555064 6_3:+38881211 None:intergenic
CCGTATCAACTTATCAAATG+TGG 0.556663 6_3:-38879727 Msa0950520:CDS
ATGACCTAGATATTGATGAA+TGG 0.558926 6_3:-38881249 Msa0950520:CDS
ACGCTTTGAAGCCTTGGGAT+CGG 0.561957 6_3:+38878726 None:intergenic
TTGCTAACAATCCTTACATA+CGG 0.569585 6_3:+38880383 None:intergenic
TGACTCCTAGGGTATGTGTC+GGG 0.570784 6_3:-38881303 Msa0950520:intron
CATTTGGAGGATGGTCAGAA+GGG 0.573571 6_3:-38878807 Msa0950520:CDS
GCCGTCAAAATTTAAGCCAT+CGG 0.574058 6_3:-38880933 Msa0950520:CDS
CGTGTTCTTTCATATGGCAA+GGG 0.574490 6_3:-38878282 Msa0950520:CDS
AAGGTTTCAACTGTAGGCGT+CGG 0.576185 6_3:-38880293 Msa0950520:CDS
TAGGTTGGACACCTTCACTC+AGG 0.577036 6_3:+38877321 None:intergenic
CTTAGTGGATCTGAAAGGAT+CGG 0.577607 6_3:-38880611 Msa0950520:CDS
CTCTGAGAGAGCAGATGTAG+CGG 0.578673 6_3:+38880569 None:intergenic
ATAATATGTTCTTCATCCAA+AGG 0.581319 6_3:+38880842 None:intergenic
CGGGCACTCACTCGTGATCG+AGG 0.582396 6_3:+38879870 None:intergenic
AAGTCGAGGCATTCTCACCT+AGG 0.585217 6_3:-38878182 Msa0950520:CDS
TTATGTGTAGGGATTTGTAA+AGG 0.589448 6_3:-38877666 Msa0950520:intron
TGTGTCGGGACATGGAATGT+TGG 0.591213 6_3:-38881289 Msa0950520:CDS
GACATATATCGTTGAAGTCG+AGG 0.593117 6_3:-38878196 Msa0950520:CDS
CTTACCTCTGGTGAAAAGGA+AGG 0.597530 6_3:-38879983 Msa0950520:CDS
TGAGAGAGCAGATGTAGCGG+AGG 0.599168 6_3:+38880572 None:intergenic
ATTAATTCAGACAAGTACTA+CGG 0.610965 6_3:-38878751 Msa0950520:CDS
TAAACAAAAGCATACCATGC+TGG 0.612461 6_3:+38878700 None:intergenic
AAGTGATAGCGACATTGGCG+AGG 0.613888 6_3:-38880873 Msa0950520:CDS
CTGACTCCTAGGGTATGTGT+CGG 0.614552 6_3:-38881304 Msa0950520:intron
CAGTGTGGGGAAGAAAGTCA+CGG 0.618301 6_3:-38881639 Msa0950520:CDS
ATATCAGGGTCATCCTCCGA+TGG 0.624050 6_3:+38880917 None:intergenic
AACCTACACATACAACTGCA+AGG 0.629111 6_3:-38877357 Msa0950520:three_prime_UTR
GTCGGGACATGGAATGTTGG+AGG 0.636107 6_3:-38881286 Msa0950520:CDS
GTACTACGGAGCCGATCCCA+AGG 0.637666 6_3:-38878737 Msa0950520:CDS
AACCTTGCAGTTGTATGTGT+AGG 0.639180 6_3:+38877355 None:intergenic
GAATGCTTAGTGGATCTGAA+AGG 0.639563 6_3:-38880616 Msa0950520:CDS
GAATATGATGATGAACATGA+AGG 0.642715 6_3:-38882757 Msa0950520:intron
TCAGATGCGAACCTGAGTGA+AGG 0.645825 6_3:-38877332 Msa0950520:three_prime_UTR
CTTCAAAGCGTACACCAGCA+TGG 0.647826 6_3:-38878714 Msa0950520:intron
GTCAAAATTTAAGCCATCGG+AGG 0.648754 6_3:-38880930 Msa0950520:CDS
TGAGATTACTGAGTTACAGA+CGG 0.650084 6_3:-38878257 Msa0950520:CDS
TCAATATCTAGGTCATCAGG+TGG 0.654491 6_3:+38881256 None:intergenic
CTAGATATTGATGAATGGCT+CGG 0.659228 6_3:-38881244 Msa0950520:CDS
GTCGGCATTATGGGCTACAT+CGG 0.664638 6_3:-38880275 Msa0950520:CDS
ACTGGCACTATCAGCAACGT+CGG 0.673608 6_3:+38880769 None:intergenic
TGTAAGTGGGACAAAGATCG+AGG 0.673990 6_3:+38883137 None:intergenic
ATTTGGAGGATGGTCAGAAG+GGG 0.681947 6_3:-38878806 Msa0950520:CDS
TCACGGTTTATGGACAACAG+AGG 0.683441 6_3:-38881622 Msa0950520:CDS
ACATAAACACAAAGGAACTG+AGG 0.685610 6_3:-38881426 Msa0950520:intron
ATCTCAGTACATAAACACAA+AGG 0.695319 6_3:-38881434 Msa0950520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATACATTTATTGTTTTTTT+TGG - chr6_3:38877503-38877522 Msa0950520:three_prime_UTR 10.0%
!!! ATACATTTATTGTTTTTTTT+GGG - chr6_3:38877504-38877523 Msa0950520:three_prime_UTR 10.0%
!!! TTTGTTAATTTGATTAAATT+TGG - chr6_3:38877841-38877860 Msa0950520:intron 10.0%
!!! ATAAATAAAAATAAAAGCAT+AGG + chr6_3:38881821-38881840 None:intergenic 10.0%
!! AATAAAAAAAAACAGTGATT+TGG + chr6_3:38877365-38877384 None:intergenic 15.0%
!! CAACTAAAAATTCATAAAAA+TGG + chr6_3:38877775-38877794 None:intergenic 15.0%
!!! TTTTAGTAAATATTCAAAGT+TGG - chr6_3:38877874-38877893 Msa0950520:intron 15.0%
!!! CATTTTGAAATATTATAATC+TGG + chr6_3:38877935-38877954 None:intergenic 15.0%
!!! CATTATTACTTTTTTTGATT+TGG - chr6_3:38878153-38878172 Msa0950520:CDS 15.0%
!! TAAACATATTCATAATTTGA+AGG - chr6_3:38880153-38880172 Msa0950520:intron 15.0%
!!! TTTAATCAAAAGTTTTTAAG+TGG - chr6_3:38880343-38880362 Msa0950520:CDS 15.0%
!!! TTAATCAAAAGTTTTTAAGT+GGG - chr6_3:38880344-38880363 Msa0950520:CDS 15.0%
!!! TGCTTTTATTTTTATTTATC+TGG - chr6_3:38881822-38881841 Msa0950520:intron 15.0%
!!! AAGATTCTATTTTGATGATT+TGG - chr6_3:38877799-38877818 Msa0950520:intron 20.0%
!!! AGATTCTATTTTGATGATTT+GGG - chr6_3:38877800-38877819 Msa0950520:intron 20.0%
!!! TTTGAAATATTATAATCTGG+AGG + chr6_3:38877932-38877951 None:intergenic 20.0%
!!! ATTAACATTTTGCAAATTCA+GGG + chr6_3:38877960-38877979 None:intergenic 20.0%
!! TCATTACTTATATATGAGAT+CGG + chr6_3:38878025-38878044 None:intergenic 20.0%
!! TAATGAATAGTTAATGAATC+TGG - chr6_3:38878039-38878058 Msa0950520:intron 20.0%
!! CATTGAATAATTGACATATT+TGG + chr6_3:38878078-38878097 None:intergenic 20.0%
!! CAAAAAAAGTAATAATGTCA+AGG + chr6_3:38878150-38878169 None:intergenic 20.0%
!! GGACTATAATAACATTAATT+GGG + chr6_3:38878404-38878423 None:intergenic 20.0%
!! AGGACTATAATAACATTAAT+TGG + chr6_3:38878405-38878424 None:intergenic 20.0%
!!! ATTAAAATTTTGCCACTTTA+CGG - chr6_3:38878453-38878472 Msa0950520:intron 20.0%
!!! ATACAGTCCTATAATTTTAT+GGG - chr6_3:38878513-38878532 Msa0950520:intron 20.0%
!!! TCTTTTATTTCACCAATAAA+CGG - chr6_3:38878553-38878572 Msa0950520:intron 20.0%
!! CAATTATAGAGAAAAAACAT+CGG + chr6_3:38878944-38878963 None:intergenic 20.0%
!! AAAATATTACCAGCATTTAA+GGG + chr6_3:38879401-38879420 None:intergenic 20.0%
!! AAAAATATTACCAGCATTTA+AGG + chr6_3:38879402-38879421 None:intergenic 20.0%
!!! TTAAATGCTGGTAATATTTT+TGG - chr6_3:38879401-38879420 Msa0950520:intron 20.0%
!! ATATTTCTTCTTCAATATCA+GGG + chr6_3:38879565-38879584 None:intergenic 20.0%
!! AATATTTCTTCTTCAATATC+AGG + chr6_3:38879566-38879585 None:intergenic 20.0%
!! TATTTGTGATGTAAATACTA+CGG - chr6_3:38879643-38879662 Msa0950520:intron 20.0%
!!! CTTTTATAATCAATCTTAAC+CGG + chr6_3:38879737-38879756 None:intergenic 20.0%
!! TTGAATGATTTAAAAGAAGT+TGG + chr6_3:38879935-38879954 None:intergenic 20.0%
!!! TAATTCTTTCAAGTCATTTA+TGG - chr6_3:38879988-38880007 Msa0950520:CDS 20.0%
!!! TAATCAAAAGTTTTTAAGTG+GGG - chr6_3:38880345-38880364 Msa0950520:CDS 20.0%
!! AACAAAAGAATTGAACTATA+CGG + chr6_3:38880645-38880664 None:intergenic 20.0%
!! TTATTTGCAGAAGAATAATT+TGG - chr6_3:38880698-38880717 Msa0950520:CDS 20.0%
!! ATTATAATTCATGTAATGCA+CGG + chr6_3:38881035-38881054 None:intergenic 20.0%
!! AATGTAATTTAGAAAACCAT+TGG - chr6_3:38881419-38881438 Msa0950520:intron 20.0%
!! AAACAAATCTAATATTGACA+TGG + chr6_3:38881454-38881473 None:intergenic 20.0%
!!! TATTAGATTTGTTTATCGTA+TGG - chr6_3:38881460-38881479 Msa0950520:CDS 20.0%
!! TTGAATAACTACATGTATTA+TGG + chr6_3:38881518-38881537 None:intergenic 20.0%
!!! TAAAATGAACTCAAGTTTTA+AGG - chr6_3:38881580-38881599 Msa0950520:intron 20.0%
!! TTAATCTCATATTTATACGT+TGG + chr6_3:38881699-38881718 None:intergenic 20.0%
!!! AACTTTTAAAACATGAAATC+TGG + chr6_3:38881859-38881878 None:intergenic 20.0%
!!! TTTCATGTTTTAAAAGTTCT+CGG - chr6_3:38881861-38881880 Msa0950520:intron 20.0%
!!! TTGATGAAAATTTTCATTTC+AGG - chr6_3:38882154-38882173 Msa0950520:intron 20.0%
!!! CCAACTTATTAAACTTTTAA+TGG + chr6_3:38882361-38882380 None:intergenic 20.0%
!! CCATTAAAAGTTTAATAAGT+TGG - chr6_3:38882358-38882377 Msa0950520:intron 20.0%
!! AAGAATCTATATTTAGTTGT+TGG + chr6_3:38882897-38882916 None:intergenic 20.0%
!!! TTTATTTTCCACTTTTAAAG+TGG - chr6_3:38882943-38882962 Msa0950520:intron 20.0%
!!! CATTTTTTTGTCTTTTCAAT+AGG - chr6_3:38882975-38882994 Msa0950520:intron 20.0%
! AAGAAAATTGCAGAGAAATT+GGG - chr6_3:38877548-38877567 Msa0950520:three_prime_UTR 25.0%
!!! TATTTTGATGATTTGGGAAA+TGG - chr6_3:38877806-38877825 Msa0950520:intron 25.0%
!!! ATTTTGATGATTTGGGAAAT+GGG - chr6_3:38877807-38877826 Msa0950520:intron 25.0%
! TAGTAAATATTCAAAGTTGG+TGG - chr6_3:38877877-38877896 Msa0950520:intron 25.0%
!! GATTAACATTTTGCAAATTC+AGG + chr6_3:38877961-38877980 None:intergenic 25.0%
! TGCAAAATGTTAATCAAGTT+CGG - chr6_3:38877966-38877985 Msa0950520:intron 25.0%
!!! TAAGCAAAGATTCTTTTTTC+AGG + chr6_3:38878103-38878122 None:intergenic 25.0%
! TCTTTGCTTATATATGAGAT+TGG - chr6_3:38878113-38878132 Msa0950520:CDS 25.0%
!!! CAACACATTTTTTAGCTTTA+CGG - chr6_3:38878261-38878280 Msa0950520:CDS 25.0%
!!! AACACATTTTTTAGCTTTAC+GGG - chr6_3:38878262-38878281 Msa0950520:CDS 25.0%
! ACATTAATTGGGTAATATCA+CGG + chr6_3:38878393-38878412 None:intergenic 25.0%
!! TTTAGAATATCGATAATGTG+AGG - chr6_3:38878481-38878500 Msa0950520:intron 25.0%
!! GATACAGTCCTATAATTTTA+TGG - chr6_3:38878512-38878531 Msa0950520:intron 25.0%
! AGATTTGCCCATAAAATTAT+AGG + chr6_3:38878523-38878542 None:intergenic 25.0%
!! TATAATTTTATGGGCAAATC+TGG - chr6_3:38878522-38878541 Msa0950520:intron 25.0%
!! ATAATTTTATGGGCAAATCT+GGG - chr6_3:38878523-38878542 Msa0950520:intron 25.0%
! TTTATCAATAGCATTGTACT+TGG - chr6_3:38878639-38878658 Msa0950520:intron 25.0%
! AGTTTGGAAAATTGAGAATT+AGG - chr6_3:38878667-38878686 Msa0950520:intron 25.0%
! GTTTGGAAAATTGAGAATTA+GGG - chr6_3:38878668-38878687 Msa0950520:intron 25.0%
! AACAAAGTCTGTAATTCAAA+AGG + chr6_3:38878976-38878995 None:intergenic 25.0%
! ATCACTTTCATCAAACAAAT+CGG + chr6_3:38879347-38879366 None:intergenic 25.0%
! CAAAATGGGAGAATATTATT+CGG - chr6_3:38879447-38879466 Msa0950520:intron 25.0%
! AAAATGGGAGAATATTATTC+GGG - chr6_3:38879448-38879467 Msa0950520:intron 25.0%
! ATAATATGTTCTTCATCCAA+AGG + chr6_3:38879626-38879645 None:intergenic 25.0%
! ATTTGTGATGTAAATACTAC+GGG - chr6_3:38879644-38879663 Msa0950520:intron 25.0%
!!! GATTGATTTTAACGACTTAA+AGG + chr6_3:38879960-38879979 None:intergenic 25.0%
! GATGGAAAAATAAATATCGA+GGG + chr6_3:38880255-38880274 None:intergenic 25.0%
! AGATGGAAAAATAAATATCG+AGG + chr6_3:38880256-38880275 None:intergenic 25.0%
!!! AATCAAAAGTTTTTAAGTGG+GGG - chr6_3:38880346-38880365 Msa0950520:CDS 25.0%
! ATACCAATATTAACATTGCA+CGG - chr6_3:38880371-38880390 Msa0950520:CDS 25.0%
!!! AACAACTTTTTCAATTTTCC+AGG - chr6_3:38880400-38880419 Msa0950520:CDS 25.0%
!!! ACAACTTTTTCAATTTTCCA+GGG - chr6_3:38880401-38880420 Msa0950520:CDS 25.0%
! TTTCATTCACCTTCTATTAT+TGG - chr6_3:38880557-38880576 Msa0950520:CDS 25.0%
! AAAATTGCTTGAAAAAGATC+AGG - chr6_3:38880795-38880814 Msa0950520:CDS 25.0%
! AACAATACATGCAATAGTTT+CGG + chr6_3:38880826-38880845 None:intergenic 25.0%
!!! TTGGTTTGAGCATATAATTT+TGG - chr6_3:38881088-38881107 Msa0950520:intron 25.0%
! TGAATAAATGAGAATACGTT+CGG - chr6_3:38881188-38881207 Msa0950520:intron 25.0%
!!! TAGAAAATAGTTCTGAGTAA+AGG - chr6_3:38881258-38881277 Msa0950520:CDS 25.0%
! AGTTATTCAACTTTGTTCTA+TGG - chr6_3:38881528-38881547 Msa0950520:intron 25.0%
!! TTGAGTTCATTTTATGAAGT+TGG + chr6_3:38881574-38881593 None:intergenic 25.0%
! ATTAATTCAGACAAGTACTA+CGG - chr6_3:38881714-38881733 Msa0950520:intron 25.0%
!!! TATGGAAACTTTGGTTTTAA+CGG + chr6_3:38882552-38882571 None:intergenic 25.0%
! TCAATTATTTCAAGACAAGA+CGG + chr6_3:38882607-38882626 None:intergenic 25.0%
! TTTCCAGAATATCAATATCA+AGG - chr6_3:38882832-38882851 Msa0950520:CDS 25.0%
!! AACTATTTCCACTTTAAAAG+TGG + chr6_3:38882954-38882973 None:intergenic 25.0%
!! TTGTCTTTTCAATAGGATTT+AGG - chr6_3:38882982-38883001 Msa0950520:intron 25.0%
!! TTTAGGTTCAAATGTTTGAA+TGG - chr6_3:38882999-38883018 Msa0950520:intron 25.0%
! ACAAGTACACACATATATAT+AGG + chr6_3:38883031-38883050 None:intergenic 25.0%
! CAAATTTTCAACAGTGATGA+AGG - chr6_3:38877422-38877441 Msa0950520:three_prime_UTR 30.0%
!!! TTTTTTGGGTTTGTTGATGA+TGG - chr6_3:38877518-38877537 Msa0950520:three_prime_UTR 30.0%
GAAGAAAATTGCAGAGAAAT+TGG - chr6_3:38877547-38877566 Msa0950520:three_prime_UTR 30.0%
! TTCATCAATACAGCTTTTCT+GGG - chr6_3:38877587-38877606 Msa0950520:three_prime_UTR 30.0%
ATGCGTAAATGGCTTAATAT+TGG - chr6_3:38877621-38877640 Msa0950520:three_prime_UTR 30.0%
! GAATATGATGATGAACATGA+AGG - chr6_3:38877708-38877727 Msa0950520:intron 30.0%
ATATTATAATCTGGAGGACT+AGG + chr6_3:38877926-38877945 None:intergenic 30.0%
TACTTATATATGAGATCGGA+GGG + chr6_3:38878021-38878040 None:intergenic 30.0%
TTACTTATATATGAGATCGG+AGG + chr6_3:38878022-38878041 None:intergenic 30.0%
TTGCTTATATATGAGATTGG+AGG - chr6_3:38878116-38878135 Msa0950520:CDS 30.0%
TGCTTATATATGAGATTGGA+GGG - chr6_3:38878117-38878136 Msa0950520:CDS 30.0%
CGTAAAGCTAAAAAATGTGT+TGG + chr6_3:38878263-38878282 None:intergenic 30.0%
ATAGTCCTTACAAATACCAA+CGG - chr6_3:38878417-38878436 Msa0950520:intron 30.0%
!! TTCTAAAATGATCCGTAAAG+TGG + chr6_3:38878468-38878487 None:intergenic 30.0%
ATTGTACTTGGATACTAGTT+TGG - chr6_3:38878651-38878670 Msa0950520:intron 30.0%
AGATTGTTCCTGTGAATTAT+AGG - chr6_3:38878732-38878751 Msa0950520:CDS 30.0%
! TGTTTATAACTCGTGTCATT+TGG - chr6_3:38878758-38878777 Msa0950520:CDS 30.0%
! TTGTAGTCTCAATTTGAGTT+TGG - chr6_3:38878790-38878809 Msa0950520:CDS 30.0%
ATGTTACCATTTGATTCAGA+CGG + chr6_3:38878879-38878898 None:intergenic 30.0%
ATCTCAGTACATAAACACAA+AGG - chr6_3:38879031-38879050 Msa0950520:intron 30.0%
ATGACCTAGATATTGATGAA+TGG - chr6_3:38879216-38879235 Msa0950520:intron 30.0%
! AAAACTTTGAGAAGTATGCT+CGG + chr6_3:38879302-38879321 None:intergenic 30.0%
! CGAATAATATTCTCCCATTT+TGG + chr6_3:38879449-38879468 None:intergenic 30.0%
!!! CATTTTGTTTTCGTTACTGA+AGG + chr6_3:38879494-38879513 None:intergenic 30.0%
TTGCTAACAATCCTTACATA+CGG + chr6_3:38880085-38880104 None:intergenic 30.0%
! TTGGTATTTTCATGACTGTA+TGG - chr6_3:38880113-38880132 Msa0950520:intron 30.0%
! TGGTATTTTCATGACTGTAT+GGG - chr6_3:38880114-38880133 Msa0950520:intron 30.0%
AATTTGAAGGTTTCAACTGT+AGG - chr6_3:38880166-38880185 Msa0950520:intron 30.0%
AAAGTAATGGTCTAAAGAGA+GGG + chr6_3:38880230-38880249 None:intergenic 30.0%
AAAAGTAATGGTCTAAAGAG+AGG + chr6_3:38880231-38880250 None:intergenic 30.0%
AATATCGAGGGAAAAAGTAA+TGG + chr6_3:38880243-38880262 None:intergenic 30.0%
TACCAATATTAACATTGCAC+GGG - chr6_3:38880372-38880391 Msa0950520:CDS 30.0%
TTAGGAAGTCCAATAATAGA+AGG + chr6_3:38880569-38880588 None:intergenic 30.0%
TCTATTATTGGACTTCCTAA+AGG - chr6_3:38880569-38880588 Msa0950520:CDS 30.0%
AAACAAAGAACAGGTATTTC+GGG + chr6_3:38880617-38880636 None:intergenic 30.0%
GAAACAAAGAACAGGTATTT+CGG + chr6_3:38880618-38880637 None:intergenic 30.0%
TGCAGAAGAATAATTTGGTT+AGG - chr6_3:38880703-38880722 Msa0950520:CDS 30.0%
!! CCACATTTGATAAGTTGATA+CGG + chr6_3:38880741-38880760 None:intergenic 30.0%
ATGATAGCTTGAACTCAATT+AGG + chr6_3:38880890-38880909 None:intergenic 30.0%
AATTGAGTTCAAGCTATCAT+AGG - chr6_3:38880890-38880909 Msa0950520:CDS 30.0%
AGATACGTAGTTATTGCTTA+TGG - chr6_3:38881058-38881077 Msa0950520:CDS 30.0%
!!! CTCAGACTGTTATTTTAATC+TGG + chr6_3:38881157-38881176 None:intergenic 30.0%
GAAGAAAATGAAAACTGAGT+CGG - chr6_3:38881224-38881243 Msa0950520:CDS 30.0%
CATTATATTTATGTGCAGCA+AGG + chr6_3:38881403-38881422 None:intergenic 30.0%
TCTCATATTTATACGTTGGT+GGG + chr6_3:38881695-38881714 None:intergenic 30.0%
ATCTCATATTTATACGTTGG+TGG + chr6_3:38881696-38881715 None:intergenic 30.0%
TATCTGAGTTAATCTTCATG+CGG - chr6_3:38881887-38881906 Msa0950520:intron 30.0%
ATTGTAAGAACATAAAGTGC+AGG + chr6_3:38881913-38881932 None:intergenic 30.0%
AATACCACATGTCAATTTCA+GGG + chr6_3:38882021-38882040 None:intergenic 30.0%
AAATACCACATGTCAATTTC+AGG + chr6_3:38882022-38882041 None:intergenic 30.0%
!! ACATGTGGTATTTGCTTTTA+TGG - chr6_3:38882029-38882048 Msa0950520:intron 30.0%
! ATTTTGCATCATCCTAATCA+TGG + chr6_3:38882070-38882089 None:intergenic 30.0%
!!! CACATGTTTTGATATGAGTT+GGG - chr6_3:38882444-38882463 Msa0950520:intron 30.0%
GTTAAAACCAAAGTTTCCAT+AGG - chr6_3:38882551-38882570 Msa0950520:intron 30.0%
TTTACAAATCCCTACACATA+AGG + chr6_3:38882800-38882819 None:intergenic 30.0%
TTATGTGTAGGGATTTGTAA+AGG - chr6_3:38882799-38882818 Msa0950520:CDS 30.0%
!!! GTGTGAATGTTTTTTTGATC+CGG - chr6_3:38883060-38883079 Msa0950520:five_prime_UTR 30.0%
GGAACAGAATTTGTGTAAGT+GGG + chr6_3:38877344-38877363 None:intergenic 35.0%
TGGAACAGAATTTGTGTAAG+TGG + chr6_3:38877345-38877364 None:intergenic 35.0%
TTTCAACAGTGATGAAGGAA+AGG - chr6_3:38877427-38877446 Msa0950520:three_prime_UTR 35.0%
! TAAAAGTGTAGTGTACCTGT+TGG + chr6_3:38877464-38877483 None:intergenic 35.0%
! GTTCATCAATACAGCTTTTC+TGG - chr6_3:38877586-38877605 Msa0950520:three_prime_UTR 35.0%
TCAAACTCATCATCATCTTC+AGG + chr6_3:38877675-38877694 None:intergenic 35.0%
!!! TTTTTGATTTGGACCATCGT+CGG - chr6_3:38878164-38878183 Msa0950520:CDS 35.0%
AATATAATTCATCCCTCCGT+TGG + chr6_3:38878436-38878455 None:intergenic 35.0%
CCTAAAACAGAATAGTTCAG+GGG + chr6_3:38878585-38878604 None:intergenic 35.0%
GCCTAAAACAGAATAGTTCA+GGG + chr6_3:38878586-38878605 None:intergenic 35.0%
AGCCTAAAACAGAATAGTTC+AGG + chr6_3:38878587-38878606 None:intergenic 35.0%
!! GAACTATTCTGTTTTAGGCT+AGG - chr6_3:38878587-38878606 Msa0950520:intron 35.0%
AAACACAGCCTATAATTCAC+AGG + chr6_3:38878743-38878762 None:intergenic 35.0%
!! TAACTCGTGTCATTTGGAAT+TGG - chr6_3:38878764-38878783 Msa0950520:CDS 35.0%
CAGACTTTGTTCCAAAGTTA+AGG - chr6_3:38878985-38879004 Msa0950520:intron 35.0%
GACTTCTGTTTCCTTAACTT+TGG + chr6_3:38878999-38879018 None:intergenic 35.0%
ACATAAACACAAAGGAACTG+AGG - chr6_3:38879039-38879058 Msa0950520:intron 35.0%
TCATCAATATCTAGGTCATC+AGG + chr6_3:38879215-38879234 None:intergenic 35.0%
CTAGATATTGATGAATGGCT+CGG - chr6_3:38879221-38879240 Msa0950520:intron 35.0%
!!! ATATTCTCCCATTTTGGAAC+AGG + chr6_3:38879443-38879462 None:intergenic 35.0%
! TTGTTTTCGTTACTGAAGGT+TGG + chr6_3:38879490-38879509 None:intergenic 35.0%
! TCCGATGGCTTAAATTTTGA+CGG + chr6_3:38879536-38879555 None:intergenic 35.0%
CAACATGAGCACAAGTTTAT+TGG - chr6_3:38879670-38879689 Msa0950520:intron 35.0%
! ATTGATGCATCCATGTTTTC+TGG + chr6_3:38879803-38879822 None:intergenic 35.0%
! TCTTCTTTTCCGCTTCATTA+AGG + chr6_3:38880059-38880078 None:intergenic 35.0%
AAAGAAGATCTCCGTATGTA+AGG - chr6_3:38880071-38880090 Msa0950520:intron 35.0%
AAGGATTGTTAGCAAGCAAA+TGG - chr6_3:38880090-38880109 Msa0950520:intron 35.0%
ATTGTTAGCAAGCAAATGGT+TGG - chr6_3:38880094-38880113 Msa0950520:intron 35.0%
CCGTATCAACTTATCAAATG+TGG - chr6_3:38880738-38880757 Msa0950520:CDS 35.0%
AATACATGCAATAGTTTCGG+TGG + chr6_3:38880823-38880842 None:intergenic 35.0%
! TTTTTGATCTCTTGTTCTCG+AGG - chr6_3:38880919-38880938 Msa0950520:CDS 35.0%
TATTGCTTATGGAGCAGATT+TGG - chr6_3:38881069-38881088 Msa0950520:CDS 35.0%
TCTTCAATCCAATGAGTCTA+GGG + chr6_3:38881120-38881139 None:intergenic 35.0%
TTCTTCAATCCAATGAGTCT+AGG + chr6_3:38881121-38881140 None:intergenic 35.0%
ATAAATGAGAATACGTTCGG+TGG - chr6_3:38881191-38881210 Msa0950520:intron 35.0%
! CAAGCATTTTCTTCCTAAAG+CGG - chr6_3:38881347-38881366 Msa0950520:intron 35.0%
ACATGAAAATGTTCCGCTTT+AGG + chr6_3:38881363-38881382 None:intergenic 35.0%
GACATGGATATAGATACCAA+TGG + chr6_3:38881438-38881457 None:intergenic 35.0%
TTTATCGTATGGTTCCTAAC+TGG - chr6_3:38881471-38881490 Msa0950520:CDS 35.0%
TGGAACATAGTTATCCAACT+TGG + chr6_3:38881498-38881517 None:intergenic 35.0%
! TAAACAAAAGCATACCATGC+TGG + chr6_3:38881768-38881787 None:intergenic 35.0%
TGCAACTCTATTCCATGATT+AGG - chr6_3:38882055-38882074 Msa0950520:intron 35.0%
TGTGCTTCAATCTAACTTCA+AGG - chr6_3:38882114-38882133 Msa0950520:intron 35.0%
TGTGATCGTGTTCTTTCATA+TGG - chr6_3:38882177-38882196 Msa0950520:intron 35.0%
TGAGATTACTGAGTTACAGA+CGG - chr6_3:38882208-38882227 Msa0950520:intron 35.0%
CTCTGCATTAGTGAATGTTA+GGG + chr6_3:38882322-38882341 None:intergenic 35.0%
TCTCTGCATTAGTGAATGTT+AGG + chr6_3:38882323-38882342 None:intergenic 35.0%
ATGCAAGGTATGCTTGTATA+TGG + chr6_3:38882417-38882436 None:intergenic 35.0%
!!! GCACATGTTTTGATATGAGT+TGG - chr6_3:38882443-38882462 Msa0950520:intron 35.0%
CTATGATCTCTAGATTCTTG+TGG - chr6_3:38882513-38882532 Msa0950520:intron 35.0%
GTAGAATAGGAGTCTACATT+AGG + chr6_3:38882778-38882797 None:intergenic 35.0%
TCCTATTCTACCTTATGTGT+AGG - chr6_3:38882787-38882806 Msa0950520:CDS 35.0%
CCTATTCTACCTTATGTGTA+GGG - chr6_3:38882788-38882807 Msa0950520:CDS 35.0%
GCTCCTTGATATTGATATTC+TGG + chr6_3:38882838-38882857 None:intergenic 35.0%
TGTGTGTACTTGTGTGATTA+AGG - chr6_3:38883038-38883057 Msa0950520:exon 35.0%
TGATGACAGATCCAGACAAA+GGG + chr6_3:38877992-38878011 None:intergenic 40.0%
! TTGATGACAGATCCAGACAA+AGG + chr6_3:38877993-38878012 None:intergenic 40.0%
ATGTCAGAATCAACACTGCT+AGG + chr6_3:38878347-38878366 None:intergenic 40.0%
TCCTTACAAATACCAACGGA+GGG - chr6_3:38878421-38878440 Msa0950520:intron 40.0%
ACAGAATAGTTCAGGGGAAA+TGG + chr6_3:38878579-38878598 None:intergenic 40.0%
! CCCCTGAACTATTCTGTTTT+AGG - chr6_3:38878582-38878601 Msa0950520:intron 40.0%
!! CTATTCTGTTTTAGGCTAGG+AGG - chr6_3:38878590-38878609 Msa0950520:intron 40.0%
CGCGAAGAACACAGTTAATA+TGG - chr6_3:38879096-38879115 Msa0950520:intron 40.0%
AGCGTCTCATATCTGGATTA+TGG - chr6_3:38879131-38879150 Msa0950520:intron 40.0%
ATGGTGTTTATCTGACTCCT+AGG - chr6_3:38879150-38879169 Msa0950520:intron 40.0%
TGGTGTTTATCTGACTCCTA+GGG - chr6_3:38879151-38879170 Msa0950520:intron 40.0%
TCAATATCTAGGTCATCAGG+TGG + chr6_3:38879212-38879231 None:intergenic 40.0%
CGAGCCATTCATCAATATCT+AGG + chr6_3:38879223-38879242 None:intergenic 40.0%
GAGATTGTACCCTTAAATGC+TGG - chr6_3:38879389-38879408 Msa0950520:intron 40.0%
!! TAAATTTTGACGGCGATGGA+GGG + chr6_3:38879526-38879545 None:intergenic 40.0%
!! TTAAATTTTGACGGCGATGG+AGG + chr6_3:38879527-38879546 None:intergenic 40.0%
GCCGTCAAAATTTAAGCCAT+CGG - chr6_3:38879532-38879551 Msa0950520:intron 40.0%
GTCAAAATTTAAGCCATCGG+AGG - chr6_3:38879535-38879554 Msa0950520:intron 40.0%
! TTCGAAAGTGATAGCGACAT+TGG - chr6_3:38879587-38879606 Msa0950520:intron 40.0%
! ATCAATCTTAACCGGTTCAC+TGG + chr6_3:38879729-38879748 None:intergenic 40.0%
! GACAGTTTTCTTTTCCGAAG+AGG - chr6_3:38879756-38879775 Msa0950520:CDS 40.0%
! CTTTTCCGAAGAGGTTTGAT+TGG - chr6_3:38879765-38879784 Msa0950520:intron 40.0%
!!! ATGTTTTCTGGTGGACTTTG+CGG + chr6_3:38879791-38879810 None:intergenic 40.0%
GGATGCATCAATTTCCCAAA+AGG - chr6_3:38879811-38879830 Msa0950520:intron 40.0%
! AAGCATTCTGGTTAGTGTCT+TGG + chr6_3:38879837-38879856 None:intergenic 40.0%
ACACTAACCAGAATGCTTAG+TGG - chr6_3:38879839-38879858 Msa0950520:intron 40.0%
TTCAGATCCACTAAGCATTC+TGG + chr6_3:38879849-38879868 None:intergenic 40.0%
! GAATGCTTAGTGGATCTGAA+AGG - chr6_3:38879849-38879868 Msa0950520:intron 40.0%
! CTTAGTGGATCTGAAAGGAT+CGG - chr6_3:38879854-38879873 Msa0950520:intron 40.0%
GTCATTTATGGATGACATGC+CGG - chr6_3:38880000-38880019 Msa0950520:CDS 40.0%
TCATTTATGGATGACATGCC+GGG - chr6_3:38880001-38880020 Msa0950520:CDS 40.0%
AAGGCTTCAAGGTCAATTTC+AGG + chr6_3:38880040-38880059 None:intergenic 40.0%
ACCTTGAAGCCTTAATGAAG+CGG - chr6_3:38880047-38880066 Msa0950520:intron 40.0%
TGAATGATGCCAGGAAAACA+TGG + chr6_3:38880285-38880304 None:intergenic 40.0%
CCAACTTTATGAATGATGCC+AGG + chr6_3:38880294-38880313 None:intergenic 40.0%
CCTGGCATCATTCATAAAGT+TGG - chr6_3:38880291-38880310 Msa0950520:CDS 40.0%
AGCCCGTGCAATGTTAATAT+TGG + chr6_3:38880377-38880396 None:intergenic 40.0%
ACGGTGAAGAAACAAAGAAC+AGG + chr6_3:38880626-38880645 None:intergenic 40.0%
CTCTTATCTCGAAAAAGCAG+TGG - chr6_3:38880770-38880789 Msa0950520:CDS 40.0%
GAAAATGAAAACTGAGTCGG+TGG - chr6_3:38881227-38881246 Msa0950520:CDS 40.0%
TTATCCAACTTGGTCCAGTT+AGG + chr6_3:38881488-38881507 None:intergenic 40.0%
CTGATGCGAGAACTCAAAAA+CGG - chr6_3:38881633-38881652 Msa0950520:CDS 40.0%
GAACTCAAAAACGGTGCATT+TGG - chr6_3:38881642-38881661 Msa0950520:intron 40.0%
AAACATGGAAGAAGAGTCTG+AGG + chr6_3:38881792-38881811 None:intergenic 40.0%
AAGCATAGGATGCGAAAACA+TGG + chr6_3:38881807-38881826 None:intergenic 40.0%
TAGTCCCTGAAATTGACATG+TGG - chr6_3:38882014-38882033 Msa0950520:intron 40.0%
CTTCAAGGTGTAAGAGTTAG+AGG - chr6_3:38882129-38882148 Msa0950520:intron 40.0%
TCGTGTTCTTTCATATGGCA+AGG - chr6_3:38882182-38882201 Msa0950520:intron 40.0%
CGTGTTCTTTCATATGGCAA+GGG - chr6_3:38882183-38882202 Msa0950520:intron 40.0%
!! GTGATCCGATATTTTGAGCT+CGG + chr6_3:38882235-38882254 None:intergenic 40.0%
AACGATATATGTCGCAGTCA+CGG + chr6_3:38882262-38882281 None:intergenic 40.0%
GACATATATCGTTGAAGTCG+AGG - chr6_3:38882269-38882288 Msa0950520:intron 40.0%
AGAATAGTTCACTCAGCCTA+TGG + chr6_3:38882570-38882589 None:intergenic 40.0%
CCCTACACATAAGGTAGAAT+AGG + chr6_3:38882791-38882810 None:intergenic 40.0%
AACCTACACATACAACTGCA+AGG - chr6_3:38883108-38883127 Msa0950520:five_prime_UTR 40.0%
AACCTTGCAGTTGTATGTGT+AGG + chr6_3:38883113-38883132 None:intergenic 40.0%
TGTAAGTGGGACAAAGATCG+AGG + chr6_3:38877331-38877350 None:intergenic 45.0%
AAGGACACAGAATCACCAAC+AGG - chr6_3:38877446-38877465 Msa0950520:three_prime_UTR 45.0%
! CAAGAGTGGTGATGCGTAAA+TGG - chr6_3:38877610-38877629 Msa0950520:three_prime_UTR 45.0%
! TAGTCTTACGTTGTCAGCGT+GGG + chr6_3:38878206-38878225 None:intergenic 45.0%
!! TTAGTCTTACGTTGTCAGCG+TGG + chr6_3:38878207-38878226 None:intergenic 45.0%
! TGTGTTGGCCAACCTTTACT+TGG + chr6_3:38878248-38878267 None:intergenic 45.0%
GTCCTTACAAATACCAACGG+AGG - chr6_3:38878420-38878439 Msa0950520:intron 45.0%
TCCCTCCGTTGGTATTTGTA+AGG + chr6_3:38878425-38878444 None:intergenic 45.0%
GGGAAGAAAGTCACGGTTTA+TGG - chr6_3:38878833-38878852 Msa0950520:CDS 45.0%
TCACGGTTTATGGACAACAG+AGG - chr6_3:38878843-38878862 Msa0950520:intron 45.0%
GAAGCTCCGTCTGAATCAAA+TGG - chr6_3:38878870-38878889 Msa0950520:intron 45.0%
! TAGTCGAAGCGTCTCATATC+TGG - chr6_3:38879124-38879143 Msa0950520:intron 45.0%
ACACTCGTCCTGTTCCAAAA+TGG - chr6_3:38879432-38879451 Msa0950520:intron 45.0%
CACTCGTCCTGTTCCAAAAT+GGG - chr6_3:38879433-38879452 Msa0950520:intron 45.0%
!! GGCTTAAATTTTGACGGCGA+TGG + chr6_3:38879530-38879549 None:intergenic 45.0%
GCAAAGTCCACCAGAAAACA+TGG - chr6_3:38879790-38879809 Msa0950520:intron 45.0%
! GATGCATCCATGTTTTCTGG+TGG + chr6_3:38879800-38879819 None:intergenic 45.0%
!! GGTTAGTGTCTTGGCCTTTT+GGG + chr6_3:38879828-38879847 None:intergenic 45.0%
!! TGGTTAGTGTCTTGGCCTTT+TGG + chr6_3:38879829-38879848 None:intergenic 45.0%
! TCTGCTCTCTCAGAGAGTAT+TGG - chr6_3:38879904-38879923 Msa0950520:CDS 45.0%
TCCGCTTCATTAAGGCTTCA+AGG + chr6_3:38880051-38880070 None:intergenic 45.0%
TCATGACTGTATGGGTTCGT+CGG - chr6_3:38880122-38880141 Msa0950520:intron 45.0%
AAGGTTTCAACTGTAGGCGT+CGG - chr6_3:38880172-38880191 Msa0950520:intron 45.0%
GGAAAACATGGTACGGTAGA+TGG + chr6_3:38880273-38880292 None:intergenic 45.0%
! TCTACCGTACCATGTTTTCC+TGG - chr6_3:38880273-38880292 Msa0950520:CDS 45.0%
GATGCCAGGAAAACATGGTA+CGG + chr6_3:38880280-38880299 None:intergenic 45.0%
ATTTGCACGCATCTTACCTC+TGG - chr6_3:38880470-38880489 Msa0950520:CDS 45.0%
GCATCTTACCTCTGGTGAAA+AGG - chr6_3:38880478-38880497 Msa0950520:CDS 45.0%
CTTACCTCTGGTGAAAAGGA+AGG - chr6_3:38880482-38880501 Msa0950520:CDS 45.0%
! ATCTCCTTCCTTTTCACCAG+AGG + chr6_3:38880489-38880508 None:intergenic 45.0%
TCGTGATCGAGGATTCCTTT+AGG + chr6_3:38880587-38880606 None:intergenic 45.0%
GGAAGATTCCCTAGACTCAT+TGG - chr6_3:38881109-38881128 Msa0950520:intron 45.0%
CTCAAAAACGGTGCATTTGG+AGG - chr6_3:38881645-38881664 Msa0950520:intron 45.0%
AAAACGGTGCATTTGGAGGA+TGG - chr6_3:38881649-38881668 Msa0950520:intron 45.0%
CATTTGGAGGATGGTCAGAA+GGG - chr6_3:38881658-38881677 Msa0950520:intron 45.0%
ATTTGGAGGATGGTCAGAAG+GGG - chr6_3:38881659-38881678 Msa0950520:intron 45.0%
ACGGACCGAGCTCAAAATAT+CGG - chr6_3:38882227-38882246 Msa0950520:intron 45.0%
ACGATATATGTCGCAGTCAC+GGG + chr6_3:38882261-38882280 None:intergenic 45.0%
AACATGTGCTCAAGCATGCA+AGG + chr6_3:38882432-38882451 None:intergenic 45.0%
CACTCAGCCTATGGAAACTT+TGG + chr6_3:38882561-38882580 None:intergenic 45.0%
! ACAGCTTTTCTGGGCAAGAG+TGG - chr6_3:38877596-38877615 Msa0950520:three_prime_UTR 50.0%
ATCAAGTTCGGCCCTTTGTC+TGG - chr6_3:38877978-38877997 Msa0950520:intron 50.0%
AGTCTTACGTTGTCAGCGTG+GGG + chr6_3:38878205-38878224 None:intergenic 50.0%
AGCTTTACGGGAATCGAACC+TGG - chr6_3:38878274-38878293 Msa0950520:CDS 50.0%
GCTTTACGGGAATCGAACCT+GGG - chr6_3:38878275-38878294 Msa0950520:CDS 50.0%
CTAGGACCGGTTACCACATT+GGG - chr6_3:38878321-38878340 Msa0950520:intron 50.0%
CAGGGGAAATGGCCGTTTAT+TGG + chr6_3:38878568-38878587 None:intergenic 50.0%
GTGTGTGATGCTTGCAGTGT+GGG - chr6_3:38878812-38878831 Msa0950520:CDS 50.0%
TGTGTGATGCTTGCAGTGTG+GGG - chr6_3:38878813-38878832 Msa0950520:CDS 50.0%
CAGTGTGGGGAAGAAAGTCA+CGG - chr6_3:38878826-38878845 Msa0950520:CDS 50.0%
CTGACTCCTAGGGTATGTGT+CGG - chr6_3:38879161-38879180 Msa0950520:intron 50.0%
TGACTCCTAGGGTATGTGTC+GGG - chr6_3:38879162-38879181 Msa0950520:intron 50.0%
TGTGTCGGGACATGGAATGT+TGG - chr6_3:38879176-38879195 Msa0950520:intron 50.0%
CCAGCTGACATCTATGTCCT+CGG - chr6_3:38879254-38879273 Msa0950520:intron 50.0%
CAGCTGACATCTATGTCCTC+GGG - chr6_3:38879255-38879274 Msa0950520:intron 50.0%
TCCTCGGGTAAGTTCTTCAC+CGG - chr6_3:38879270-38879289 Msa0950520:intron 50.0%
GAAGTATGCTCGGCAACAAC+CGG + chr6_3:38879292-38879311 None:intergenic 50.0%
ATATCAGGGTCATCCTCCGA+TGG + chr6_3:38879551-38879570 None:intergenic 50.0%
! AAGTGATAGCGACATTGGCG+AGG - chr6_3:38879592-38879611 Msa0950520:intron 50.0%
TGGCGAGGAAGTTCATCCTT+TGG - chr6_3:38879607-38879626 Msa0950520:intron 50.0%
ACTGGCACTATCAGCAACGT+CGG + chr6_3:38879699-38879718 None:intergenic 50.0%
CAGTGTCAACACCAGTGAAC+CGG - chr6_3:38879715-38879734 Msa0950520:CDS 50.0%
TGCGGCCAATCAAACCTCTT+CGG + chr6_3:38879773-38879792 None:intergenic 50.0%
!! CTGAAAGGATCGGTTTGAGC+TGG - chr6_3:38879864-38879883 Msa0950520:intron 50.0%
! CTCTGAGAGAGCAGATGTAG+CGG + chr6_3:38879899-38879918 None:intergenic 50.0%
TATGGATGACATGCCGGGAA+TGG - chr6_3:38880006-38880025 Msa0950520:CDS 50.0%
ATGGATGACATGCCGGGAAT+GGG - chr6_3:38880007-38880026 Msa0950520:CDS 50.0%
TCAGGAAGCAAACCCATTCC+CGG + chr6_3:38880022-38880041 None:intergenic 50.0%
!! AACTGTAGGCGTCGGCATTA+TGG - chr6_3:38880180-38880199 Msa0950520:intron 50.0%
!! ACTGTAGGCGTCGGCATTAT+GGG - chr6_3:38880181-38880200 Msa0950520:intron 50.0%
! GTCGGCATTATGGGCTACAT+CGG - chr6_3:38880190-38880209 Msa0950520:intron 50.0%
TGCTGACAGATACTGATCCC+TGG + chr6_3:38880421-38880440 None:intergenic 50.0%
GGTTCCTAACTGGACCAAGT+TGG - chr6_3:38881481-38881500 Msa0950520:intron 50.0%
GCATTTGGAGGATGGTCAGA+AGG - chr6_3:38881657-38881676 Msa0950520:intron 50.0%
!! ACGCTTTGAAGCCTTGGGAT+CGG + chr6_3:38881742-38881761 None:intergenic 50.0%
!! GGTGTACGCTTTGAAGCCTT+GGG + chr6_3:38881747-38881766 None:intergenic 50.0%
!! TGGTGTACGCTTTGAAGCCT+TGG + chr6_3:38881748-38881767 None:intergenic 50.0%
CTTCAAAGCGTACACCAGCA+TGG - chr6_3:38881751-38881770 Msa0950520:intron 50.0%
! AAGTCGAGGCATTCTCACCT+AGG - chr6_3:38882283-38882302 Msa0950520:intron 50.0%
! GTTGCTTGTCACTTCGACTC+CGG + chr6_3:38883082-38883101 None:intergenic 50.0%
TCAGATGCGAACCTGAGTGA+AGG - chr6_3:38883133-38883152 Msa0950520:five_prime_UTR 50.0%
! TAGGTTGGACACCTTCACTC+AGG + chr6_3:38883147-38883166 None:intergenic 50.0%
AAGACTAATCTCCGCTCGCC+CGG - chr6_3:38878219-38878238 Msa0950520:CDS 55.0%
CCAACCTTTACTTGGTCCCC+GGG + chr6_3:38878240-38878259 None:intergenic 55.0%
GCCAACCTTTACTTGGTCCC+CGG + chr6_3:38878241-38878260 None:intergenic 55.0%
GAATCGAACCTGGGAACACC+AGG - chr6_3:38878284-38878303 Msa0950520:CDS 55.0%
CTAGGACTCAGGGATCAACC+TGG + chr6_3:38878305-38878324 None:intergenic 55.0%
!! CAGGTTGATCCCTGAGTCCT+AGG - chr6_3:38878303-38878322 Msa0950520:intron 55.0%
TGATCCCTGAGTCCTAGGAC+CGG - chr6_3:38878308-38878327 Msa0950520:intron 55.0%
GTAACCGGTCCTAGGACTCA+GGG + chr6_3:38878315-38878334 None:intergenic 55.0%
CCAATGTGGTAACCGGTCCT+AGG + chr6_3:38878323-38878342 None:intergenic 55.0%
CCTAGGACCGGTTACCACAT+TGG - chr6_3:38878320-38878339 Msa0950520:intron 55.0%
GCTAGGCCCAATGTGGTAAC+CGG + chr6_3:38878330-38878349 None:intergenic 55.0%
CAACACTGCTAGGCCCAATG+TGG + chr6_3:38878337-38878356 None:intergenic 55.0%
GGTGTGTGATGCTTGCAGTG+TGG - chr6_3:38878811-38878830 Msa0950520:CDS 55.0%
CATGTCCCGACACATACCCT+AGG + chr6_3:38879170-38879189 None:intergenic 55.0%
CTAGGGTATGTGTCGGGACA+TGG - chr6_3:38879168-38879187 Msa0950520:intron 55.0%
GTCGGGACATGGAATGTTGG+AGG - chr6_3:38879179-38879198 Msa0950520:intron 55.0%
CCGAGGACATAGATGTCAGC+TGG + chr6_3:38879257-38879276 None:intergenic 55.0%
ACCGGTGAAGAACTTACCCG+AGG + chr6_3:38879274-38879293 None:intergenic 55.0%
!! CGGTTCACTGGTGTTGACAC+TGG + chr6_3:38879717-38879736 None:intergenic 55.0%
!! AAGGATCGGTTTGAGCTGGC+CGG - chr6_3:38879868-38879887 Msa0950520:intron 55.0%
TGAGAGAGCAGATGTAGCGG+AGG + chr6_3:38879896-38879915 None:intergenic 55.0%
! GGACCATCGTCGGCTACACA+CGG - chr6_3:38878174-38878193 Msa0950520:CDS 60.0%
ACTCCGTGTGTAGCCGACGA+TGG + chr6_3:38878180-38878199 None:intergenic 60.0%
AGACTAATCTCCGCTCGCCC+GGG - chr6_3:38878220-38878239 Msa0950520:CDS 60.0%
CCCGGGGACCAAGTAAAGGT+TGG - chr6_3:38878237-38878256 Msa0950520:CDS 60.0%
GGGATCAACCTGGTGTTCCC+AGG + chr6_3:38878295-38878314 None:intergenic 60.0%
GGTAACCGGTCCTAGGACTC+AGG + chr6_3:38878316-38878335 None:intergenic 60.0%
! AGCAGATGTAGCGGAGGCTC+CGG + chr6_3:38879890-38879909 None:intergenic 60.0%
GTACTACGGAGCCGATCCCA+AGG - chr6_3:38881728-38881747 Msa0950520:intron 60.0%
GACTAATCTCCGCTCGCCCG+GGG - chr6_3:38878221-38878240 Msa0950520:CDS 65.0%
TTACTTGGTCCCCGGGCGAG+CGG + chr6_3:38878233-38878252 None:intergenic 65.0%
CTCGCCCGGGGACCAAGTAA+AGG - chr6_3:38878233-38878252 Msa0950520:CDS 65.0%
CGGGCACTCACTCGTGATCG+AGG + chr6_3:38880598-38880617 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 38877310 38883177 38877310 ID=Msa0950520;Name=Msa0950520
chr6_3 mRNA 38877310 38883177 38877310 ID=Msa0950520-mRNA-1;Parent=Msa0950520;Name=Msa0950520-mRNA-1;_AED=0.15;_eAED=0.15;_QI=128|0.9|0.90|1|0.9|0.81|11|385|627
chr6_3 exon 38877310 38877677 38877310 ID=Msa0950520-mRNA-1:exon:9456;Parent=Msa0950520-mRNA-1
chr6_3 exon 38878084 38878311 38878084 ID=Msa0950520-mRNA-1:exon:9455;Parent=Msa0950520-mRNA-1
chr6_3 exon 38878715 38878854 38878715 ID=Msa0950520-mRNA-1:exon:9454;Parent=Msa0950520-mRNA-1
chr6_3 exon 38879671 38879779 38879671 ID=Msa0950520-mRNA-1:exon:9453;Parent=Msa0950520-mRNA-1
chr6_3 exon 38879881 38880065 38879881 ID=Msa0950520-mRNA-1:exon:9452;Parent=Msa0950520-mRNA-1
chr6_3 exon 38880268 38881105 38880268 ID=Msa0950520-mRNA-1:exon:9451;Parent=Msa0950520-mRNA-1
chr6_3 exon 38881211 38881315 38881211 ID=Msa0950520-mRNA-1:exon:9450;Parent=Msa0950520-mRNA-1
chr6_3 exon 38881427 38881499 38881427 ID=Msa0950520-mRNA-1:exon:9449;Parent=Msa0950520-mRNA-1
chr6_3 exon 38881596 38881658 38881596 ID=Msa0950520-mRNA-1:exon:9448;Parent=Msa0950520-mRNA-1
chr6_3 exon 38882758 38882887 38882758 ID=Msa0950520-mRNA-1:exon:9447;Parent=Msa0950520-mRNA-1
chr6_3 exon 38883020 38883177 38883020 ID=Msa0950520-mRNA-1:exon:9446;Parent=Msa0950520-mRNA-1
chr6_3 five_prime_UTR 38883050 38883177 38883050 ID=Msa0950520-mRNA-1:five_prime_utr;Parent=Msa0950520-mRNA-1
chr6_3 CDS 38883020 38883049 38883020 ID=Msa0950520-mRNA-1:cds;Parent=Msa0950520-mRNA-1
chr6_3 CDS 38882758 38882887 38882758 ID=Msa0950520-mRNA-1:cds;Parent=Msa0950520-mRNA-1
chr6_3 CDS 38881596 38881658 38881596 ID=Msa0950520-mRNA-1:cds;Parent=Msa0950520-mRNA-1
chr6_3 CDS 38881427 38881499 38881427 ID=Msa0950520-mRNA-1:cds;Parent=Msa0950520-mRNA-1
chr6_3 CDS 38881211 38881315 38881211 ID=Msa0950520-mRNA-1:cds;Parent=Msa0950520-mRNA-1
chr6_3 CDS 38880268 38881105 38880268 ID=Msa0950520-mRNA-1:cds;Parent=Msa0950520-mRNA-1
chr6_3 CDS 38879881 38880065 38879881 ID=Msa0950520-mRNA-1:cds;Parent=Msa0950520-mRNA-1
chr6_3 CDS 38879671 38879779 38879671 ID=Msa0950520-mRNA-1:cds;Parent=Msa0950520-mRNA-1
chr6_3 CDS 38878715 38878854 38878715 ID=Msa0950520-mRNA-1:cds;Parent=Msa0950520-mRNA-1
chr6_3 CDS 38878101 38878311 38878101 ID=Msa0950520-mRNA-1:cds;Parent=Msa0950520-mRNA-1
chr6_3 three_prime_UTR 38878084 38878100 38878084 ID=Msa0950520-mRNA-1:three_prime_utr;Parent=Msa0950520-mRNA-1
chr6_3 three_prime_UTR 38877310 38877677 38877310 ID=Msa0950520-mRNA-1:three_prime_utr;Parent=Msa0950520-mRNA-1
Gene Sequence

>Msa0950520

ATGAAGGAAAGGACACAGAATCACCAACAGCTTTTCTGGGCAAGAGTGGTGATGCGTAAATGGCTTAATATTGGTAGCAATGAATCTGATTATAGTGCTGATCCTGAAGATGATGATGAGTTTGATGAAGATGATGATGAATATGATGATGAACATGAAGTGTGGGGAAGAAAGTCACGGTTTATGGACAACAGAGGTTTTGAAGCTCCGTCTGAATCAAATGACTTTGTTCCAAAGTTAAGGAAACAGAAGTCGTCAACTTATAGATCTCAGTACATAAACACAAAGGAACTGAGGGTATGTGTCGGGACATGGAATGTTGGAGGAAGACTTCCACCTGATGACCTAGATATTGATGAATGGCTCGGTGTCAATGAACCAGCTGACATCTATGTCCTCGGTCTTCAAGAGATTGTACCCTTAAATGCTGGTAATATTTTTGGTTCTGAAGACACTCGTCCTGTTCCAAAATGGGAGAATATTATTCGGGAAGCACTTAATAGAGTCCAACCTTCAGTAACGAAAACAAAATGCTTCAGCGACCCTCCATCGCCGTCAAAATTTAAGCCATCGGAGGATGACCCTGATATTGAAGAAGAAATATTATTCGAAAGTGATAGCGACATTGGCGAGGAAGTTCATCCTTTGGATGAAGAACATATTATTTGTGATGTAAATACTACGGGAGACAACATGAGCACAAGTTTATTGGCTTCCGACGTTGCTGATAGTGCCAGTGTCAACACCAGTGAACCGGTTAAGATTGATTATAAAAGACAGTTTTCTTTTCCGAAGAGGTTTGATTGGCCGCAAAGTCCACCAGAAAACATGGATGCATCAATTTCCCAAAAGGCCAAGACACTAACCAGAATGCTTAGTGGATCTGAAAGGATCGGTTTGAGCTGGCCGGAGCCTCCGCTACATCTGCTCTCTCAGAGAGTATTGGACAGACCAACTTCTTTTAAATCATTCAAATCCTTTAAGTCGTTAAAATCAATCAAAACATATAATTCTTTCAAGTCATTTATGGATGACATGCCGGGAATGGGTTTGCTTCCTGAAATTGACCTTGAAGCCTTAATGAAGCGGAAAAGAAGATCTCCGTATGTAAGGATTGTTAGCAAGCAAATGGTTGGTATTTTCATGACTGTATGGGTTCGTCGGAGCTTACGTAAACATATTCATAATTTGAAGGTTTCAACTGTAGGCGTCGGCATTATGGGCTACATCGGTAACAAAGGATCAGTATCTGTCAGCATGTCGATATATCAGACACTTTTTTGTTTTATTTGCACGCATCTTACCTCTGGTGAAAAGGAAGGAGATGAGCTTAAACGAAATGCTGATGTTCATGAAATTCTTCGCAGAACACATTTTCATTCACCTTCTATTATTGGACTTCCTAAAGGAATCCTCGATCACGAAAGAATAATTTGGTTAGGTGATTTGAATTACCGTATCAACTTATCAAATGTGGAAGCAAAAGCTCTTATCTCGAAAAAGCAGTGGTCAAAATTGCTTGAAAAAGATCAGCTGATGCGAGAACTCAAAAACGGTGCATTTGGAGGATGGTCAGAAGGGGCATTAAACTTCCCACCAACGTATAAATATGAGATTAATTCAGACAAGTACTACGGAGCCGATCCCAAGGCTTCAAAGCGTACACCAGCATGGTGTGATCGTGTTCTTTCATATGGCAAGGGAATGAGATTACTGAGTTACAGACGGACCGAGCTCAAAATATCGGATCACAGACCCGTGACTGCGACATATATCGTTGAAGTCGAGGCATTCTCACCTAGGAAGCTACAGCGAGCCCTAACATTCACTAATGCAGAGATTGAAAATGAAGAAGCCATTAAAAGTTTAATAAGTTGGAAATAG
Protein sequence

>Msa0950520

MKERTQNHQQLFWARVVMRKWLNIGSNESDYSADPEDDDEFDEDDDEYDDEHEVWGRKSRFMDNRGFEAPSESNDFVPKLRKQKSSTYRSQYINTKELRVCVGTWNVGGRLPPDDLDIDEWLGVNEPADIYVLGLQEIVPLNAGNIFGSEDTRPVPKWENIIREALNRVQPSVTKTKCFSDPPSPSKFKPSEDDPDIEEEILFESDSDIGEEVHPLDEEHIICDVNTTGDNMSTSLLASDVADSASVNTSEPVKIDYKRQFSFPKRFDWPQSPPENMDASISQKAKTLTRMLSGSERIGLSWPEPPLHLLSQRVLDRPTSFKSFKSFKSLKSIKTYNSFKSFMDDMPGMGLLPEIDLEALMKRKRRSPYVRIVSKQMVGIFMTVWVRRSLRKHIHNLKVSTVGVGIMGYIGNKGSVSVSMSIYQTLFCFICTHLTSGEKEGDELKRNADVHEILRRTHFHSPSIIGLPKGILDHERIIWLGDLNYRINLSNVEAKALISKKQWSKLLEKDQLMRELKNGAFGGWSEGALNFPPTYKYEINSDKYYGADPKASKRTPAWCDRVLSYGKGMRLLSYRRTELKISDHRPVTATYIVEVEAFSPRKLQRALTFTNAEIENEEAIKSLISWK*