Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988520 | XP_013452184.2 | 95.469 | 309 | 13 | 1 | 1 | 308 | 1 | 309 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988520 | sp|Q80XC2|TRM61_MOUSE | 45.485 | 299 | 143 | 6 | 10 | 305 | 4 | 285 | 6.82e-80 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988520 | A0A072UAU6 | 95.469 | 309 | 13 | 1 | 1 | 308 | 1 | 309 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0296760 | Msa0988520 | 0.808259 | 3.381938e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988520 | MtrunA17_Chr6g0468581 | 95.469 | 309 | 13 | 1 | 1 | 308 | 1 | 309 | 0.0 | 591 |
| Msa0988520 | MtrunA17_Chr2g0282851 | 77.489 | 231 | 52 | 0 | 1 | 231 | 52 | 282 | 4.11e-136 | 387 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988520 | AT5G14600.1 | 73.651 | 315 | 76 | 2 | 1 | 308 | 1 | 315 | 1.41e-175 | 488 |
Find 89 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTTCATTGTTATGTATT+TGG | 0.122846 | 6_4:+42629065 | Msa0988520:CDS |
| ACAATTATGTGGAAGGTTTC+TGG | 0.176634 | 6_4:+42630855 | Msa0988520:three_prime_UTR |
| GATGAAGAGGTTTGATTTAA+TGG | 0.223569 | 6_4:+42630977 | Msa0988520:three_prime_UTR |
| TCCTGAAGAGTTTGCTGGCT+TGG | 0.242918 | 6_4:+42630265 | Msa0988520:CDS |
| TACCAATTCTTCTTCTGTTA+TGG | 0.270661 | 6_4:+42630684 | Msa0988520:CDS |
| AACAATTAGTAACGGTGATT+TGG | 0.271982 | 6_4:+42628816 | Msa0988520:CDS |
| GGTTGCGTCGTTCTTGAATC+TGG | 0.281471 | 6_4:+42629099 | Msa0988520:CDS |
| CGAAGTTCGAGAAGGGAAAA+TGG | 0.297664 | 6_4:+42630570 | Msa0988520:CDS |
| GTCTAAAGTATTCAACAATA+AGG | 0.308450 | 6_4:+42628954 | Msa0988520:CDS |
| TTGTTTATGTGAAAGATATA+AGG | 0.311677 | 6_4:+42630521 | Msa0988520:intron |
| CCAAACATGAATTTCCTATA+TGG | 0.311905 | 6_4:-42630890 | None:intergenic |
| AAAACTAAAGTCCACAATTC+AGG | 0.328439 | 6_4:-42629006 | None:intergenic |
| GATTGGATAGGAAAGTCATT+TGG | 0.331486 | 6_4:+42628931 | Msa0988520:CDS |
| GAGGAGTGTGGGTTTGATTA+TGG | 0.339920 | 6_4:-42628233 | None:intergenic |
| CTTGAATCTGGCACTGGAAG+TGG | 0.346516 | 6_4:+42629111 | Msa0988520:CDS |
| GCCAAGCCAGCAAACTCTTC+AGG | 0.354828 | 6_4:-42630266 | None:intergenic |
| ATGAAGAGGTTTGATTTAAT+GGG | 0.372610 | 6_4:+42630978 | Msa0988520:three_prime_UTR |
| GGTATTTGTAATCTCCATAT+AGG | 0.372906 | 6_4:+42630876 | Msa0988520:three_prime_UTR |
| ATGTATTTGGAGATTGTTCC+TGG | 0.385811 | 6_4:+42629078 | Msa0988520:CDS |
| AGCCATAACAGAAGAAGAAT+TGG | 0.410761 | 6_4:-42630686 | None:intergenic |
| CCATATAGGAAATTCATGTT+TGG | 0.417762 | 6_4:+42630890 | Msa0988520:three_prime_UTR |
| GATCCCTCAGATACTGTTAC+TGG | 0.419969 | 6_4:-42628871 | None:intergenic |
| ATTGGATAGGAAAGTCATTT+GGG | 0.422230 | 6_4:+42628932 | Msa0988520:CDS |
| GACGGTAATGATGGCTCTAA+TGG | 0.423313 | 6_4:+42630607 | Msa0988520:CDS |
| AGGGATGACTTTGAGAGGAT+TGG | 0.424669 | 6_4:+42630191 | Msa0988520:intron |
| GAAGAAGAAGAGAGGAGTGT+GGG | 0.454806 | 6_4:-42628244 | None:intergenic |
| TAATTCTGTATTACAGTCAC+TGG | 0.463847 | 6_4:+42630955 | Msa0988520:three_prime_UTR |
| TCTAAAGTATTCAACAATAA+GGG | 0.468151 | 6_4:+42628955 | Msa0988520:CDS |
| CTTAATTCACAACAATTATG+TGG | 0.469309 | 6_4:+42630844 | Msa0988520:three_prime_UTR |
| TCCGGATGCTTCAGTTACTA+AGG | 0.470024 | 6_4:+42628383 | Msa0988520:five_prime_UTR |
| TCGGGAAGTACCGGTGAAGT+TGG | 0.488752 | 6_4:-42630426 | None:intergenic |
| TTGAATCTGGCACTGGAAGT+GGG | 0.495210 | 6_4:+42629112 | Msa0988520:CDS |
| AGAAGAAGAAGAGAGGAGTG+TGG | 0.498039 | 6_4:-42628245 | None:intergenic |
| AAGAGGTTTGATTTAATGGG+TGG | 0.498099 | 6_4:+42630981 | Msa0988520:three_prime_UTR |
| CTTTAACTACTTCACTTGCA+AGG | 0.505822 | 6_4:+42629136 | Msa0988520:CDS |
| ATTTGGCAATTGTTTATGAA+AGG | 0.507354 | 6_4:+42628833 | Msa0988520:CDS |
| TTTAAACATTCAGATTGGAT+AGG | 0.513874 | 6_4:+42628919 | Msa0988520:CDS |
| ATTCACAACAATTATGTGGA+AGG | 0.514332 | 6_4:+42630848 | Msa0988520:three_prime_UTR |
| ACCTTAGTAACTGAAGCATC+CGG | 0.516385 | 6_4:-42628384 | None:intergenic |
| GTTTGATTATGGTGAGAGTG+TGG | 0.518562 | 6_4:-42628222 | None:intergenic |
| GCAAGGGCAGTTGCTCCTAC+AGG | 0.518867 | 6_4:+42629153 | Msa0988520:CDS |
| TACTTGTTTATTGAAAATGT+TGG | 0.523271 | 6_4:+42628759 | Msa0988520:exon |
| TCAGAGATTGACGGTAATGA+TGG | 0.525850 | 6_4:+42630598 | Msa0988520:CDS |
| CTTGTAGGGATGACTTTGAG+AGG | 0.533942 | 6_4:+42630186 | Msa0988520:intron |
| TTGATTAAGAAGAAGAAGAG+AGG | 0.533969 | 6_4:-42628252 | None:intergenic |
| GTCGTTCTTGAATCTGGCAC+TGG | 0.536486 | 6_4:+42629105 | Msa0988520:CDS |
| CGTTGTACTTGTTCAATACA+CGG | 0.539892 | 6_4:-42630383 | None:intergenic |
| GCGGGAGTGAGGGACATTCA+AGG | 0.551907 | 6_4:+42630233 | Msa0988520:CDS |
| TAGCTCCTACTCCTGAATTG+TGG | 0.553993 | 6_4:+42628995 | Msa0988520:CDS |
| AAATCTCAACATCACACCTC+CGG | 0.559579 | 6_4:+42628365 | Msa0988520:five_prime_UTR |
| AAAGTCCACAATTCAGGAGT+AGG | 0.563658 | 6_4:-42629000 | None:intergenic |
| TTTGATTATGGTGAGAGTGT+GGG | 0.566199 | 6_4:-42628221 | None:intergenic |
| GAACGTTGCCTCCTCTTGCA+AGG | 0.567462 | 6_4:-42630637 | None:intergenic |
| ATAAGCAACTTAGTCACTGC+GGG | 0.567539 | 6_4:+42630215 | Msa0988520:CDS |
| CTTAGTCACTGCGGGAGTGA+GGG | 0.568888 | 6_4:+42630223 | Msa0988520:CDS |
| ACTTAGTCACTGCGGGAGTG+AGG | 0.570411 | 6_4:+42630222 | Msa0988520:CDS |
| GATTCAAGAACGACGCAACC+AGG | 0.571390 | 6_4:-42629096 | None:intergenic |
| GGAATAGCTAGCCAAGGTTG+AGG | 0.572196 | 6_4:-42630311 | None:intergenic |
| ATGGTTCTCTTCCTTGCAAG+AGG | 0.575002 | 6_4:+42630626 | Msa0988520:CDS |
| TTTAACTACTTCACTTGCAA+GGG | 0.578833 | 6_4:+42629137 | Msa0988520:CDS |
| GAAGCCAGTAACAGTATCTG+AGG | 0.579372 | 6_4:+42628867 | Msa0988520:CDS |
| ACAATGCAATCCAACTTCAC+CGG | 0.584109 | 6_4:+42630416 | Msa0988520:CDS |
| GTTCTCTTCCTTGCAAGAGG+AGG | 0.584259 | 6_4:+42630629 | Msa0988520:CDS |
| GTTGTACTTGTTCAATACAC+GGG | 0.584848 | 6_4:-42630382 | None:intergenic |
| ATTACAGTCACTGGATGAAG+AGG | 0.584950 | 6_4:+42630964 | Msa0988520:three_prime_UTR |
| ATGGAAAGCTCAGAGATTGA+CGG | 0.586050 | 6_4:+42630589 | Msa0988520:CDS |
| AGTAACAGTATCTGAGGGAT+CGG | 0.586054 | 6_4:+42628873 | Msa0988520:CDS |
| TGACCTCTAGCTTCACCGCA+TGG | 0.587593 | 6_4:-42630712 | None:intergenic |
| TCCAGACAAAAGAAGCTATG+TGG | 0.587904 | 6_4:-42628331 | None:intergenic |
| TTTAATAGAACAATTAGTAA+CGG | 0.596180 | 6_4:+42628808 | Msa0988520:CDS |
| ACGTTCAGATGGAGCTTGCG+TGG | 0.596729 | 6_4:+42630654 | Msa0988520:CDS |
| GTGAGGGACATTCAAGGTGA+GGG | 0.600743 | 6_4:+42630239 | Msa0988520:CDS |
| AAGAGGAGGCAACGTTCAGA+TGG | 0.606722 | 6_4:+42630643 | Msa0988520:CDS |
| AACGTATAAACATGTCCTGT+AGG | 0.611682 | 6_4:-42629168 | None:intergenic |
| CGGACATACGAAGTTCGAGA+AGG | 0.611846 | 6_4:+42630562 | Msa0988520:CDS |
| CTCGAACTTCGTATGTCCGT+AGG | 0.612530 | 6_4:-42630558 | None:intergenic |
| GGACATACGAAGTTCGAGAA+GGG | 0.625372 | 6_4:+42630563 | Msa0988520:CDS |
| AACAAAGATCTGGATCAGCT+AGG | 0.636973 | 6_4:+42629202 | Msa0988520:CDS |
| AGACCATGCGGTGAAGCTAG+AGG | 0.638675 | 6_4:+42630709 | Msa0988520:CDS |
| AGTGAGGGACATTCAAGGTG+AGG | 0.642071 | 6_4:+42630238 | Msa0988520:CDS |
| AAAGTATTCAACAATAAGGG+CGG | 0.646223 | 6_4:+42628958 | Msa0988520:CDS |
| TATATAGAATCTGTGTCCTG+TGG | 0.646737 | 6_4:-42629032 | None:intergenic |
| GCTGAAGGAATAGCTAGCCA+AGG | 0.647664 | 6_4:-42630317 | None:intergenic |
| AAGCCAGTAACAGTATCTGA+GGG | 0.661239 | 6_4:+42628868 | Msa0988520:CDS |
| TCTGTTATGGCTAGACCATG+CGG | 0.664012 | 6_4:+42630697 | Msa0988520:CDS |
| GGTGAAGCTAGAGGTCACAC+TGG | 0.703760 | 6_4:+42630718 | Msa0988520:CDS |
| TTGTACTTGTTCAATACACG+GGG | 0.704021 | 6_4:-42630381 | None:intergenic |
| TTAGTAACTGAAGCATCCGG+AGG | 0.728602 | 6_4:-42628381 | None:intergenic |
| TATAAGCAACTTAGTCACTG+CGG | 0.729959 | 6_4:+42630214 | Msa0988520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATAGAACAATTAGTAA+CGG | + | chr6_4:42628808-42628827 | Msa0988520:CDS | 15.0% |
| !! | AAGGTTAAATTCATAATTTC+AGG | + | chr6_4:42628402-42628421 | Msa0988520:intron | 20.0% |
| !! | AGGTTAAATTCATAATTTCA+GGG | + | chr6_4:42628403-42628422 | Msa0988520:intron | 20.0% |
| !! | ATTGATTGAATATAATCTTG+TGG | - | chr6_4:42628682-42628701 | None:intergenic | 20.0% |
| !! | TACTTGTTTATTGAAAATGT+TGG | + | chr6_4:42628759-42628778 | Msa0988520:exon | 20.0% |
| !!! | TCTAAAGTATTCAACAATAA+GGG | + | chr6_4:42628955-42628974 | Msa0988520:CDS | 20.0% |
| !!! | GATAATGATTTTTTCAATAG+CGG | + | chr6_4:42629946-42629965 | Msa0988520:intron | 20.0% |
| !! | AACATATAAAAGAGGAAAAT+CGG | - | chr6_4:42630448-42630467 | None:intergenic | 20.0% |
| !! | ACATAAACAAACATATACAA+AGG | - | chr6_4:42630511-42630530 | None:intergenic | 20.0% |
| !! | TTGTTTATGTGAAAGATATA+AGG | + | chr6_4:42630521-42630540 | Msa0988520:intron | 20.0% |
| !! | TAAAAATAAACTGTTGTATG+AGG | - | chr6_4:42630823-42630842 | None:intergenic | 20.0% |
| !!! | ATTTGAGAGTGTTTATTTTG+TGG | - | chr6_4:42628293-42628312 | None:intergenic | 25.0% |
| ! | GGTTAAATTCATAATTTCAG+GGG | + | chr6_4:42628404-42628423 | Msa0988520:intron | 25.0% |
| ! | GTTAAATTCATAATTTCAGG+GGG | + | chr6_4:42628405-42628424 | Msa0988520:intron | 25.0% |
| !! | TTCATTGTTTTCTCTGTTTT+CGG | + | chr6_4:42628728-42628747 | Msa0988520:intron | 25.0% |
| ! | ATTTGGCAATTGTTTATGAA+AGG | + | chr6_4:42628833-42628852 | Msa0988520:CDS | 25.0% |
| !!! | GTGTTTTTAAACATTCAGAT+TGG | + | chr6_4:42628914-42628933 | Msa0988520:CDS | 25.0% |
| ! | TTTAAACATTCAGATTGGAT+AGG | + | chr6_4:42628919-42628938 | Msa0988520:CDS | 25.0% |
| !! | GTCTAAAGTATTCAACAATA+AGG | + | chr6_4:42628954-42628973 | Msa0988520:CDS | 25.0% |
| ! | ATATACATGTGCTTATCTTT+AGG | + | chr6_4:42629259-42629278 | Msa0988520:intron | 25.0% |
| ! | CTACCAAAAAACTAGAATAA+CGG | - | chr6_4:42629389-42629408 | None:intergenic | 25.0% |
| !!! | TCACCAAAAATACGTTTTTT+AGG | - | chr6_4:42629506-42629525 | None:intergenic | 25.0% |
| ! | TTATTTAACTGTACTCAATG+CGG | + | chr6_4:42630103-42630122 | Msa0988520:intron | 25.0% |
| ! | ACATATAAAAGAGGAAAATC+GGG | - | chr6_4:42630447-42630466 | None:intergenic | 25.0% |
| ! | AGTTGCATAACATATAAAAG+AGG | - | chr6_4:42630456-42630475 | None:intergenic | 25.0% |
| ! | CTTAATTCACAACAATTATG+TGG | + | chr6_4:42630844-42630863 | Msa0988520:three_prime_UTR | 25.0% |
| !! | ATGAAGAGGTTTGATTTAAT+GGG | + | chr6_4:42630978-42630997 | Msa0988520:three_prime_UTR | 25.0% |
| TTGATTAAGAAGAAGAAGAG+AGG | - | chr6_4:42628255-42628274 | None:intergenic | 30.0% | |
| ! | AACTAACGCATAGGTATTTT+CGG | + | chr6_4:42628574-42628593 | Msa0988520:intron | 30.0% |
| ! | TCATTGTTTTCTCTGTTTTC+GGG | + | chr6_4:42628729-42628748 | Msa0988520:intron | 30.0% |
| AACAATTAGTAACGGTGATT+TGG | + | chr6_4:42628816-42628835 | Msa0988520:CDS | 30.0% | |
| ATTGGATAGGAAAGTCATTT+GGG | + | chr6_4:42628932-42628951 | Msa0988520:CDS | 30.0% | |
| ! | AAAGTATTCAACAATAAGGG+CGG | + | chr6_4:42628958-42628977 | Msa0988520:CDS | 30.0% |
| AAAACTAAAGTCCACAATTC+AGG | - | chr6_4:42629009-42629028 | None:intergenic | 30.0% | |
| CAGCTTCATTGTTATGTATT+TGG | + | chr6_4:42629065-42629084 | Msa0988520:CDS | 30.0% | |
| TTTAACTACTTCACTTGCAA+GGG | + | chr6_4:42629137-42629156 | Msa0988520:CDS | 30.0% | |
| ! | TTTCTAGTGTTGTCAACTAT+TGG | + | chr6_4:42629300-42629319 | Msa0988520:intron | 30.0% |
| !!! | AGTGTTGCAGTTTTTTTTAG+CGG | - | chr6_4:42629354-42629373 | None:intergenic | 30.0% |
| !!! | TTGCCGTTATTCTAGTTTTT+TGG | + | chr6_4:42629383-42629402 | Msa0988520:intron | 30.0% |
| ! | AGCAGAAAAAAGAGACTTTT+AGG | + | chr6_4:42629425-42629444 | Msa0988520:intron | 30.0% |
| !!! | CCAAAAATACGTTTTTTAGG+CGG | - | chr6_4:42629503-42629522 | None:intergenic | 30.0% |
| !!! | AAACGTATTTTTGGTGAAAC+TGG | + | chr6_4:42629509-42629528 | Msa0988520:intron | 30.0% |
| !!! | AACGTATTTTTGGTGAAACT+GGG | + | chr6_4:42629510-42629529 | Msa0988520:intron | 30.0% |
| !! | ATCTTGCAATTCATTGATTC+AGG | - | chr6_4:42629578-42629597 | None:intergenic | 30.0% |
| ATAAATATGCCCTTCACAAA+TGG | - | chr6_4:42629810-42629829 | None:intergenic | 30.0% | |
| ! | ATTTGATTTCCATGAGCATA+GGG | + | chr6_4:42629832-42629851 | Msa0988520:intron | 30.0% |
| TATGTAATATTGCATCAGCT+AGG | + | chr6_4:42629865-42629884 | Msa0988520:intron | 30.0% | |
| GCTGATATACGAACTATATT+GGG | + | chr6_4:42630077-42630096 | Msa0988520:intron | 30.0% | |
| !! | ATACTTGTTTTTCTCCTTGT+AGG | + | chr6_4:42630171-42630190 | Msa0988520:intron | 30.0% |
| !! | TACTTGTTTTTCTCCTTGTA+GGG | + | chr6_4:42630172-42630191 | Msa0988520:intron | 30.0% |
| ! | GAAAGATATAAGGACTTTTG+AGG | + | chr6_4:42630531-42630550 | Msa0988520:intron | 30.0% |
| TACCAATTCTTCTTCTGTTA+TGG | + | chr6_4:42630684-42630703 | Msa0988520:CDS | 30.0% | |
| ATTCACAACAATTATGTGGA+AGG | + | chr6_4:42630848-42630867 | Msa0988520:three_prime_UTR | 30.0% | |
| GGTATTTGTAATCTCCATAT+AGG | + | chr6_4:42630876-42630895 | Msa0988520:three_prime_UTR | 30.0% | |
| CCAAACATGAATTTCCTATA+TGG | - | chr6_4:42630893-42630912 | None:intergenic | 30.0% | |
| CCATATAGGAAATTCATGTT+TGG | + | chr6_4:42630890-42630909 | Msa0988520:three_prime_UTR | 30.0% | |
| TAATTCTGTATTACAGTCAC+TGG | + | chr6_4:42630955-42630974 | Msa0988520:three_prime_UTR | 30.0% | |
| ! | GATGAAGAGGTTTGATTTAA+TGG | + | chr6_4:42630977-42630996 | Msa0988520:three_prime_UTR | 30.0% |
| ! | TTTGATTATGGTGAGAGTGT+GGG | - | chr6_4:42628224-42628243 | None:intergenic | 35.0% |
| ! | AGAGCAGAATTCATCCTTTT+AGG | - | chr6_4:42628431-42628450 | None:intergenic | 35.0% |
| !! | GTATTTTGGGAAGTTCAGTT+GGG | - | chr6_4:42628477-42628496 | None:intergenic | 35.0% |
| TCGTTACTTAACTAACGCAT+AGG | + | chr6_4:42628565-42628584 | Msa0988520:intron | 35.0% | |
| ! | GGTATTTTCGGTATTTCAGT+TGG | + | chr6_4:42628586-42628605 | Msa0988520:intron | 35.0% |
| ! | TCGGTTTTACAGAATCGATT+CGG | + | chr6_4:42628892-42628911 | Msa0988520:CDS | 35.0% |
| GATTGGATAGGAAAGTCATT+TGG | + | chr6_4:42628931-42628950 | Msa0988520:CDS | 35.0% | |
| TATATAGAATCTGTGTCCTG+TGG | - | chr6_4:42629035-42629054 | None:intergenic | 35.0% | |
| ATGTATTTGGAGATTGTTCC+TGG | + | chr6_4:42629078-42629097 | Msa0988520:CDS | 35.0% | |
| CTTTAACTACTTCACTTGCA+AGG | + | chr6_4:42629136-42629155 | Msa0988520:CDS | 35.0% | |
| AACGTATAAACATGTCCTGT+AGG | - | chr6_4:42629171-42629190 | None:intergenic | 35.0% | |
| ! | GATTTTCACGAACAAAGATC+TGG | + | chr6_4:42629192-42629211 | Msa0988520:CDS | 35.0% |
| !!! | ATACGTTTTTTAGGCGGTAA+TGG | - | chr6_4:42629497-42629516 | None:intergenic | 35.0% |
| ! | CCGCCTAAAAAACGTATTTT+TGG | + | chr6_4:42629500-42629519 | Msa0988520:intron | 35.0% |
| GTTATCTTCCTTGAAATTCC+GGG | - | chr6_4:42629556-42629575 | None:intergenic | 35.0% | |
| GGTTATCTTCCTTGAAATTC+CGG | - | chr6_4:42629557-42629576 | None:intergenic | 35.0% | |
| ATCCCTTCATAAATTGGCTA+TGG | + | chr6_4:42629744-42629763 | Msa0988520:intron | 35.0% | |
| ! | CATTTGATTTCCATGAGCAT+AGG | + | chr6_4:42629831-42629850 | Msa0988520:intron | 35.0% |
| ACACATGTATCAAACATCAG+AGG | - | chr6_4:42629906-42629925 | None:intergenic | 35.0% | |
| GGCTGATATACGAACTATAT+TGG | + | chr6_4:42630076-42630095 | Msa0988520:intron | 35.0% | |
| TATAAGCAACTTAGTCACTG+CGG | + | chr6_4:42630214-42630233 | Msa0988520:CDS | 35.0% | |
| GCAAAAATGTTACGACATGA+CGG | + | chr6_4:42630341-42630360 | Msa0988520:CDS | 35.0% | |
| TTGTACTTGTTCAATACACG+GGG | - | chr6_4:42630384-42630403 | None:intergenic | 35.0% | |
| GTTGTACTTGTTCAATACAC+GGG | - | chr6_4:42630385-42630404 | None:intergenic | 35.0% | |
| CGTTGTACTTGTTCAATACA+CGG | - | chr6_4:42630386-42630405 | None:intergenic | 35.0% | |
| AGCCATAACAGAAGAAGAAT+TGG | - | chr6_4:42630689-42630708 | None:intergenic | 35.0% | |
| ACAATTATGTGGAAGGTTTC+TGG | + | chr6_4:42630855-42630874 | Msa0988520:three_prime_UTR | 35.0% | |
| ! | AAGAGGTTTGATTTAATGGG+TGG | + | chr6_4:42630981-42631000 | Msa0988520:three_prime_UTR | 35.0% |
| GTTTGATTATGGTGAGAGTG+TGG | - | chr6_4:42628225-42628244 | None:intergenic | 40.0% | |
| ! | TCCACATAGCTTCTTTTGTC+TGG | + | chr6_4:42628330-42628349 | Msa0988520:five_prime_UTR | 40.0% |
| TCCAGACAAAAGAAGCTATG+TGG | - | chr6_4:42628334-42628353 | None:intergenic | 40.0% | |
| AAATCTCAACATCACACCTC+CGG | + | chr6_4:42628365-42628384 | Msa0988520:five_prime_UTR | 40.0% | |
| ! | ACCTTAGTAACTGAAGCATC+CGG | - | chr6_4:42628387-42628406 | None:intergenic | 40.0% |
| ATAATTTCAGGGGGCCTAAA+AGG | + | chr6_4:42628414-42628433 | Msa0988520:intron | 40.0% | |
| !! | GGTATTTTGGGAAGTTCAGT+TGG | - | chr6_4:42628478-42628497 | None:intergenic | 40.0% |
| GGACGTGAGCAAAATATGTT+TGG | + | chr6_4:42628607-42628626 | Msa0988520:intron | 40.0% | |
| AAGCCAGTAACAGTATCTGA+GGG | + | chr6_4:42628868-42628887 | Msa0988520:CDS | 40.0% | |
| AGTAACAGTATCTGAGGGAT+CGG | + | chr6_4:42628873-42628892 | Msa0988520:CDS | 40.0% | |
| AAAGTCCACAATTCAGGAGT+AGG | - | chr6_4:42629003-42629022 | None:intergenic | 40.0% | |
| !!! | GGACTTTAGTTTTAAGCCAC+AGG | + | chr6_4:42629016-42629035 | Msa0988520:CDS | 40.0% |
| AACAAAGATCTGGATCAGCT+AGG | + | chr6_4:42629202-42629221 | Msa0988520:CDS | 40.0% | |
| !! | CTATTGGCTCTATAGCATAG+CGG | + | chr6_4:42629316-42629335 | Msa0988520:intron | 40.0% |
| TTAGGCAGTGTTGTCAATTG+TGG | + | chr6_4:42629443-42629462 | Msa0988520:intron | 40.0% | |
| GTATGGTCGGAATCAGAATT+TGG | - | chr6_4:42629645-42629664 | None:intergenic | 40.0% | |
| AAAATCGCGATCAAACTCAC+GGG | - | chr6_4:42629702-42629721 | None:intergenic | 40.0% | |
| CAAAATCGCGATCAAACTCA+CGG | - | chr6_4:42629703-42629722 | None:intergenic | 40.0% | |
| CGCCATAGCCAATTTATGAA+GGG | - | chr6_4:42629749-42629768 | None:intergenic | 40.0% | |
| CCTTCATAAATTGGCTATGG+CGG | + | chr6_4:42629747-42629766 | Msa0988520:intron | 40.0% | |
| CTTCATAAATTGGCTATGGC+GGG | + | chr6_4:42629748-42629767 | Msa0988520:intron | 40.0% | |
| AATATGCCCTTCACAAATGG+TGG | - | chr6_4:42629807-42629826 | None:intergenic | 40.0% | |
| ATCAAACATCAGAGGAAGTC+AGG | - | chr6_4:42629898-42629917 | None:intergenic | 40.0% | |
| TGAGTCTACTATGAAAACCG+TGG | + | chr6_4:42630000-42630019 | Msa0988520:intron | 40.0% | |
| ! | GGCTGCTATTAAAGTTTTGC+TGG | + | chr6_4:42630055-42630074 | Msa0988520:intron | 40.0% |
| TACTCAATGCGGTGATAAAC+TGG | + | chr6_4:42630114-42630133 | Msa0988520:intron | 40.0% | |
| ACTGGAGATGTTCAGTGTAA+AGG | + | chr6_4:42630132-42630151 | Msa0988520:intron | 40.0% | |
| ATAAGCAACTTAGTCACTGC+GGG | + | chr6_4:42630215-42630234 | Msa0988520:CDS | 40.0% | |
| !!! | CTTGGCTGATGCAGTTTTTT+TGG | + | chr6_4:42630283-42630302 | Msa0988520:CDS | 40.0% |
| ! | TTTTGGATCTACCTCAACCT+TGG | + | chr6_4:42630300-42630319 | Msa0988520:CDS | 40.0% |
| ! | CGTAACATTTTTGCAGCTGA+AGG | - | chr6_4:42630335-42630354 | None:intergenic | 40.0% |
| ACAATGCAATCCAACTTCAC+CGG | + | chr6_4:42630416-42630435 | Msa0988520:CDS | 40.0% | |
| ATGGAAAGCTCAGAGATTGA+CGG | + | chr6_4:42630589-42630608 | Msa0988520:CDS | 40.0% | |
| TCAGAGATTGACGGTAATGA+TGG | + | chr6_4:42630598-42630617 | Msa0988520:CDS | 40.0% | |
| ATTACAGTCACTGGATGAAG+AGG | + | chr6_4:42630964-42630983 | Msa0988520:three_prime_UTR | 40.0% | |
| ! | GAGGAGTGTGGGTTTGATTA+TGG | - | chr6_4:42628236-42628255 | None:intergenic | 45.0% |
| ! | GAAGAAGAAGAGAGGAGTGT+GGG | - | chr6_4:42628247-42628266 | None:intergenic | 45.0% |
| AGAAGAAGAAGAGAGGAGTG+TGG | - | chr6_4:42628248-42628267 | None:intergenic | 45.0% | |
| ! | TTAGTAACTGAAGCATCCGG+AGG | - | chr6_4:42628384-42628403 | None:intergenic | 45.0% |
| TCCGGATGCTTCAGTTACTA+AGG | + | chr6_4:42628383-42628402 | Msa0988520:five_prime_UTR | 45.0% | |
| !!! | AACTCACGCAGGGGTATTTT+GGG | - | chr6_4:42628490-42628509 | None:intergenic | 45.0% |
| !!! | TAACTCACGCAGGGGTATTT+TGG | - | chr6_4:42628491-42628510 | None:intergenic | 45.0% |
| TGCTTGAGTTAACTCACGCA+GGG | - | chr6_4:42628500-42628519 | None:intergenic | 45.0% | |
| TTGCTTGAGTTAACTCACGC+AGG | - | chr6_4:42628501-42628520 | None:intergenic | 45.0% | |
| CTGCGTAACTTAACTCACGA+TGG | - | chr6_4:42628533-42628552 | None:intergenic | 45.0% | |
| !!! | TTTCTCTGTTTTCGGGTTGC+AGG | + | chr6_4:42628736-42628755 | Msa0988520:intron | 45.0% |
| GAAGCCAGTAACAGTATCTG+AGG | + | chr6_4:42628867-42628886 | Msa0988520:CDS | 45.0% | |
| GATCCCTCAGATACTGTTAC+TGG | - | chr6_4:42628874-42628893 | None:intergenic | 45.0% | |
| TAGCTCCTACTCCTGAATTG+TGG | + | chr6_4:42628995-42629014 | Msa0988520:CDS | 45.0% | |
| ! | TTGAATCTGGCACTGGAAGT+GGG | + | chr6_4:42629112-42629131 | Msa0988520:CDS | 45.0% |
| GCAGTGTTGTCAATTGTGGA+AGG | + | chr6_4:42629447-42629466 | Msa0988520:intron | 45.0% | |
| !! | TTTTTGGTGAAACTGGGTCC+TGG | + | chr6_4:42629516-42629535 | Msa0988520:intron | 45.0% |
| ACCGCAGAAAATTGCAGGTA+CGG | - | chr6_4:42629605-42629624 | None:intergenic | 45.0% | |
| ! | GAATCAGAATTTGGTGGGTG+CGG | - | chr6_4:42629636-42629655 | None:intergenic | 45.0% |
| GGTCGGAATCAGAATTTGGT+GGG | - | chr6_4:42629641-42629660 | None:intergenic | 45.0% | |
| TGGTCGGAATCAGAATTTGG+TGG | - | chr6_4:42629642-42629661 | None:intergenic | 45.0% | |
| ! | CGTATGATTTTGCTACCCCT+TGG | - | chr6_4:42629677-42629696 | None:intergenic | 45.0% |
| !!! | GATCGCGATTTTGACTTCCT+TGG | + | chr6_4:42629710-42629729 | Msa0988520:intron | 45.0% |
| ! | TTTGACTTCCTTGGCCATGA+CGG | + | chr6_4:42629719-42629738 | Msa0988520:intron | 45.0% |
| ACGGGCATCCCTTCATAAAT+TGG | + | chr6_4:42629738-42629757 | Msa0988520:intron | 45.0% | |
| CCGCCATAGCCAATTTATGA+AGG | - | chr6_4:42629750-42629769 | None:intergenic | 45.0% | |
| GGCACTATAGTGCTATCACA+TGG | + | chr6_4:42629967-42629986 | Msa0988520:intron | 45.0% | |
| ! | ACTGTCCTGATAGCGAAACT+GGG | - | chr6_4:42630032-42630051 | None:intergenic | 45.0% |
| ! | TACTGTCCTGATAGCGAAAC+TGG | - | chr6_4:42630033-42630052 | None:intergenic | 45.0% |
| TTTCGCTATCAGGACAGTAG+CGG | + | chr6_4:42630034-42630053 | Msa0988520:intron | 45.0% | |
| CTCTCAAAGTCATCCCTACA+AGG | - | chr6_4:42630188-42630207 | None:intergenic | 45.0% | |
| CTTGTAGGGATGACTTTGAG+AGG | + | chr6_4:42630186-42630205 | Msa0988520:intron | 45.0% | |
| ! | AGGGATGACTTTGAGAGGAT+TGG | + | chr6_4:42630191-42630210 | Msa0988520:intron | 45.0% |
| ! | GGTTTTCCTGAAGAGTTTGC+TGG | + | chr6_4:42630260-42630279 | Msa0988520:CDS | 45.0% |
| ! | AGAGGAAAATCGGGAAGTAC+CGG | - | chr6_4:42630438-42630457 | None:intergenic | 45.0% |
| !!! | GGACTTTTGAGGTACTCCTA+CGG | + | chr6_4:42630542-42630561 | Msa0988520:CDS | 45.0% |
| GGACATACGAAGTTCGAGAA+GGG | + | chr6_4:42630563-42630582 | Msa0988520:CDS | 45.0% | |
| CGAAGTTCGAGAAGGGAAAA+TGG | + | chr6_4:42630570-42630589 | Msa0988520:CDS | 45.0% | |
| !! | GACGGTAATGATGGCTCTAA+TGG | + | chr6_4:42630607-42630626 | Msa0988520:CDS | 45.0% |
| ATGGTTCTCTTCCTTGCAAG+AGG | + | chr6_4:42630626-42630645 | Msa0988520:CDS | 45.0% | |
| TCTGTTATGGCTAGACCATG+CGG | + | chr6_4:42630697-42630716 | Msa0988520:CDS | 45.0% | |
| GGGCGCGAGTAAAATGTGTT+GGG | - | chr6_4:42628457-42628476 | None:intergenic | 50.0% | |
| TGGGCGCGAGTAAAATGTGT+TGG | - | chr6_4:42628458-42628477 | None:intergenic | 50.0% | |
| GCTTGAGTTAACTCACGCAG+GGG | - | chr6_4:42628499-42628518 | None:intergenic | 50.0% | |
| GATTCAAGAACGACGCAACC+AGG | - | chr6_4:42629099-42629118 | None:intergenic | 50.0% | |
| GGTTGCGTCGTTCTTGAATC+TGG | + | chr6_4:42629099-42629118 | Msa0988520:CDS | 50.0% | |
| GTCGTTCTTGAATCTGGCAC+TGG | + | chr6_4:42629105-42629124 | Msa0988520:CDS | 50.0% | |
| ! | CTTGAATCTGGCACTGGAAG+TGG | + | chr6_4:42629111-42629130 | Msa0988520:CDS | 50.0% |
| TCCTTGAAATTCCGGGTTCG+CGG | - | chr6_4:42629549-42629568 | None:intergenic | 50.0% | |
| GCAGAAAATTGCAGGTACGG+CGG | - | chr6_4:42629602-42629621 | None:intergenic | 50.0% | |
| ! | GCCGTACCTGCAATTTTCTG+CGG | + | chr6_4:42629601-42629620 | Msa0988520:intron | 50.0% |
| GGATCACCGCAGAAAATTGC+AGG | - | chr6_4:42629610-42629629 | None:intergenic | 50.0% | |
| ! | GCAATTTTCTGCGGTGATCC+TGG | + | chr6_4:42629610-42629629 | Msa0988520:intron | 50.0% |
| TTGGCATGCTGGAGTATGGT+CGG | - | chr6_4:42629658-42629677 | None:intergenic | 50.0% | |
| ACCATACTCCAGCATGCCAA+GGG | + | chr6_4:42629658-42629677 | Msa0988520:intron | 50.0% | |
| TTGACTTCCTTGGCCATGAC+GGG | + | chr6_4:42629720-42629739 | Msa0988520:intron | 50.0% | |
| TTATGAAGGGATGCCCGTCA+TGG | - | chr6_4:42629736-42629755 | None:intergenic | 50.0% | |
| GATTTCCATGAGCATAGGGC+TGG | + | chr6_4:42629836-42629855 | Msa0988520:intron | 50.0% | |
| GCTATCCCAGTTTCGCTATC+AGG | + | chr6_4:42630024-42630043 | Msa0988520:intron | 50.0% | |
| AGTGAGGGACATTCAAGGTG+AGG | + | chr6_4:42630238-42630257 | Msa0988520:CDS | 50.0% | |
| GTGAGGGACATTCAAGGTGA+GGG | + | chr6_4:42630239-42630258 | Msa0988520:CDS | 50.0% | |
| !! | TCCTGAAGAGTTTGCTGGCT+TGG | + | chr6_4:42630265-42630284 | Msa0988520:CDS | 50.0% |
| GGAATAGCTAGCCAAGGTTG+AGG | - | chr6_4:42630314-42630333 | None:intergenic | 50.0% | |
| GCTGAAGGAATAGCTAGCCA+AGG | - | chr6_4:42630320-42630339 | None:intergenic | 50.0% | |
| CTCGAACTTCGTATGTCCGT+AGG | - | chr6_4:42630561-42630580 | None:intergenic | 50.0% | |
| CGGACATACGAAGTTCGAGA+AGG | + | chr6_4:42630562-42630581 | Msa0988520:CDS | 50.0% | |
| GTTCTCTTCCTTGCAAGAGG+AGG | + | chr6_4:42630629-42630648 | Msa0988520:CDS | 50.0% | |
| AAGAGGAGGCAACGTTCAGA+TGG | + | chr6_4:42630643-42630662 | Msa0988520:CDS | 50.0% | |
| AAATTCCGGGTTCGCGGGTT+GGG | - | chr6_4:42629543-42629562 | None:intergenic | 55.0% | |
| CCTTGAAATTCCGGGTTCGC+GGG | - | chr6_4:42629548-42629567 | None:intergenic | 55.0% | |
| GACCATACTCCAGCATGCCA+AGG | + | chr6_4:42629657-42629676 | Msa0988520:intron | 55.0% | |
| CCATACTCCAGCATGCCAAG+GGG | + | chr6_4:42629659-42629678 | Msa0988520:intron | 55.0% | |
| TTTGCTACCCCTTGGCATGC+TGG | - | chr6_4:42629669-42629688 | None:intergenic | 55.0% | |
| TCTGCCTCACAATTCCACCG+TGG | + | chr6_4:42629781-42629800 | Msa0988520:intron | 55.0% | |
| TTCACAAATGGTGGCCACGG+TGG | - | chr6_4:42629798-42629817 | None:intergenic | 55.0% | |
| ACCGTGGCCACCATTTGTGA+AGG | + | chr6_4:42629797-42629816 | Msa0988520:intron | 55.0% | |
| CCCTTCACAAATGGTGGCCA+CGG | - | chr6_4:42629801-42629820 | None:intergenic | 55.0% | |
| CCGTGGCCACCATTTGTGAA+GGG | + | chr6_4:42629798-42629817 | Msa0988520:intron | 55.0% | |
| CTGATCCAGCCCTATGCTCA+TGG | - | chr6_4:42629844-42629863 | None:intergenic | 55.0% | |
| ACTTAGTCACTGCGGGAGTG+AGG | + | chr6_4:42630222-42630241 | Msa0988520:CDS | 55.0% | |
| CTTAGTCACTGCGGGAGTGA+GGG | + | chr6_4:42630223-42630242 | Msa0988520:CDS | 55.0% | |
| GCCAAGCCAGCAAACTCTTC+AGG | - | chr6_4:42630269-42630288 | None:intergenic | 55.0% | |
| !! | TCGGGAAGTACCGGTGAAGT+TGG | - | chr6_4:42630429-42630448 | None:intergenic | 55.0% |
| GAACGTTGCCTCCTCTTGCA+AGG | - | chr6_4:42630640-42630659 | None:intergenic | 55.0% | |
| ACGTTCAGATGGAGCTTGCG+TGG | + | chr6_4:42630654-42630673 | Msa0988520:CDS | 55.0% | |
| AGACCATGCGGTGAAGCTAG+AGG | + | chr6_4:42630709-42630728 | Msa0988520:CDS | 55.0% | |
| ! | TGACCTCTAGCTTCACCGCA+TGG | - | chr6_4:42630715-42630734 | None:intergenic | 55.0% |
| GGTGAAGCTAGAGGTCACAC+TGG | + | chr6_4:42630718-42630737 | Msa0988520:CDS | 55.0% | |
| GCAAGGGCAGTTGCTCCTAC+AGG | + | chr6_4:42629153-42629172 | Msa0988520:CDS | 60.0% | |
| GAAATTCCGGGTTCGCGGGT+TGG | - | chr6_4:42629544-42629563 | None:intergenic | 60.0% | |
| CCCGCGAACCCGGAATTTCA+AGG | + | chr6_4:42629545-42629564 | Msa0988520:intron | 60.0% | |
| ! | AGAATTTGGTGGGTGCGGCC+AGG | - | chr6_4:42629631-42629650 | None:intergenic | 60.0% |
| CCCCTTGGCATGCTGGAGTA+TGG | - | chr6_4:42629662-42629681 | None:intergenic | 60.0% | |
| GTGGCCACGGTGGAATTGTG+AGG | - | chr6_4:42629788-42629807 | None:intergenic | 60.0% | |
| GCGAAACTGGGATAGCGCCA+CGG | - | chr6_4:42630020-42630039 | None:intergenic | 60.0% | |
| GCGGGAGTGAGGGACATTCA+AGG | + | chr6_4:42630233-42630252 | Msa0988520:CDS | 60.0% | |
| AGGGATGCCCGTCATGGCCA+AGG | - | chr6_4:42629730-42629749 | None:intergenic | 65.0% | |
| CTGGACCCAACCCGCGAACC+CGG | + | chr6_4:42629535-42629554 | Msa0988520:intron | 70.0% | |
| !! | CGGGTTCGCGGGTTGGGTCC+AGG | - | chr6_4:42629537-42629556 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 42628199 | 42631013 | 42628199 | ID=Msa0988520;Name=Msa0988520 |
| chr6_4 | mRNA | 42628199 | 42631013 | 42628199 | ID=Msa0988520-mRNA-1;Parent=Msa0988520;Name=Msa0988520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=223|1|1|1|0.66|0.5|4|245|308 |
| chr6_4 | exon | 42628199 | 42628404 | 42628199 | ID=Msa0988520-mRNA-1:exon:9940;Parent=Msa0988520-mRNA-1 |
| chr6_4 | exon | 42628758 | 42629223 | 42628758 | ID=Msa0988520-mRNA-1:exon:9941;Parent=Msa0988520-mRNA-1 |
| chr6_4 | exon | 42630193 | 42630437 | 42630193 | ID=Msa0988520-mRNA-1:exon:9942;Parent=Msa0988520-mRNA-1 |
| chr6_4 | exon | 42630536 | 42631013 | 42630536 | ID=Msa0988520-mRNA-1:exon:9943;Parent=Msa0988520-mRNA-1 |
| chr6_4 | five_prime_UTR | 42628199 | 42628404 | 42628199 | ID=Msa0988520-mRNA-1:five_prime_utr;Parent=Msa0988520-mRNA-1 |
| chr6_4 | five_prime_UTR | 42628758 | 42628774 | 42628758 | ID=Msa0988520-mRNA-1:five_prime_utr;Parent=Msa0988520-mRNA-1 |
| chr6_4 | CDS | 42628775 | 42629223 | 42628775 | ID=Msa0988520-mRNA-1:cds;Parent=Msa0988520-mRNA-1 |
| chr6_4 | CDS | 42630193 | 42630437 | 42630193 | ID=Msa0988520-mRNA-1:cds;Parent=Msa0988520-mRNA-1 |
| chr6_4 | CDS | 42630536 | 42630768 | 42630536 | ID=Msa0988520-mRNA-1:cds;Parent=Msa0988520-mRNA-1 |
| chr6_4 | three_prime_UTR | 42630769 | 42631013 | 42630769 | ID=Msa0988520-mRNA-1:three_prime_utr;Parent=Msa0988520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
