AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296760 MtrunA17_Chr2g0319531 93.865 163 10 0 1 163 1 163 6.10e-112 318
Msa0296760 MtrunA17_Chr2g0319491 53.947 152 61 3 3 152 1 145 8.81e-48 159
Msa0296760 MtrunA17_Chr5g0394081 46.259 147 75 3 3 148 4 147 2.41e-38 129
Msa0296760 MtrunA17_Chr7g0233671 42.581 155 83 4 6 155 6 159 4.97e-31 111
Msa0296760 MtrunA17_Chr4g0037601 44.444 144 69 4 3 141 2 139 3.15e-28 104
Msa0296760 MtrunA17_Chr7g0242551 39.000 100 52 4 39 134 54 148 2.24e-12 65.1
Msa0296760 MtrunA17_Chr5g0437181 32.727 110 65 4 31 136 41 145 5.85e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296760 AT4G21200.3 42.484 153 77 5 6 150 2 151 9.33e-34 119
Msa0296760 AT4G21200.1 42.308 156 79 5 6 153 2 154 1.06e-32 120
Msa0296760 AT1G50960.1 37.222 180 104 6 3 174 1 179 9.93e-28 107
Msa0296760 AT4G21200.2 40.385 104 54 4 6 101 2 105 7.99e-17 74.3
Msa0296760 AT5G05600.2 33.981 103 61 4 39 138 62 160 7.75e-11 60.5

Find 93 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGAACTTTATGTATTT+TGG 0.087585 2_3:-50271088 Msa0296760:three_prime_UTR
GGTATTGTATATCTTTAAAA+AGG 0.182069 2_3:+50277058 None:intergenic
CCAATCTAAGACAGCTTTCT+TGG 0.188761 2_3:-50276713 Msa0296760:CDS
CAAAATCTTCGTTCCTCTTC+TGG 0.189240 2_3:+50271436 None:intergenic
TGGAATTTCAAATGAGATTC+TGG 0.241865 2_3:-50276853 Msa0296760:CDS
ATTGCTAGTTAGTTGTAAAA+AGG 0.242009 2_3:+50271360 None:intergenic
TGATCAGTTCACAGAAGTTT+TGG 0.257845 2_3:+50272168 None:intergenic
AGTTGATGTACTGAACATTT+TGG 0.258107 2_3:-50271191 Msa0296760:three_prime_UTR
TAAGTGAAGCTGCTAGTAAA+TGG 0.258467 2_3:-50276899 Msa0296760:CDS
GTTATGTGTTGGTCCATATT+TGG 0.266200 2_3:+50276657 None:intergenic
TCTGACAGATATACCAAATA+TGG 0.283362 2_3:-50276670 Msa0296760:CDS
AGAAAATGATTTGTACTCTA+TGG 0.304513 2_3:-50277006 Msa0296760:CDS
AAAGATATACAATACCCTAT+TGG 0.349450 2_3:-50277051 Msa0296760:CDS
ATGATTAAGGTTTGTTCGTT+AGG 0.350942 2_3:-50270911 Msa0296760:three_prime_UTR
TTCTTTCAGATTATTAATCA+TGG 0.370385 2_3:-50276873 Msa0296760:CDS
TGTTGGTAGTCTGAACCTTT+TGG 0.370855 2_3:-50271124 Msa0296760:three_prime_UTR
AAGTGAAGCTGCTAGTAAAT+GGG 0.388799 2_3:-50276898 Msa0296760:CDS
ACGAAAGCAGCATATCACTA+TGG 0.398317 2_3:-50272251 Msa0296760:CDS
GAGGTTGGAGAGGAGTTAAT+AGG 0.412700 2_3:-50272044 Msa0296760:three_prime_UTR
GCATTTGGTTGCAACATACT+TGG 0.419781 2_3:-50270973 Msa0296760:three_prime_UTR
GCAGATAACTTGTTCACAAA+AGG 0.421247 2_3:+50276792 None:intergenic
AACTGAACTATGGCAGGATT+CGG 0.423026 2_3:-50271482 Msa0296760:three_prime_UTR
TTTGTCAACTATCTCTGAAA+AGG 0.431947 2_3:-50271305 Msa0296760:three_prime_UTR
GAGGAGTTAATAGGAGAAGA+AGG 0.445991 2_3:-50272035 Msa0296760:three_prime_UTR
ATGGCAGGATTCGGTGGTTA+CGG 0.452060 2_3:-50271473 Msa0296760:three_prime_UTR
ATAGGAGAAGAAGGTGGCAG+AGG 0.454543 2_3:-50272026 Msa0296760:three_prime_UTR
GCAGTCTTCAACCAGCTTCA+AGG 0.457614 2_3:+50271272 None:intergenic
ATAGTTCAGTTTAAACCTCC+TGG 0.459928 2_3:+50271494 None:intergenic
TTGAAGACTGCGACAACATA+TGG 0.463057 2_3:-50271260 Msa0296760:three_prime_UTR
GGATTCGGTGGTTACGGAGG+TGG 0.464516 2_3:-50271467 Msa0296760:three_prime_UTR
CCAAGAAAGCTGTCTTAGAT+TGG 0.464684 2_3:+50276713 None:intergenic
TTCAACCAGCTTCAAGGATG+TGG 0.465702 2_3:+50271278 None:intergenic
TTTGTGAGTTCTAAGATAGA+TGG 0.478243 2_3:-50272445 Msa0296760:CDS
TGGGAGAGAGCAACGGAGGT+TGG 0.478823 2_3:-50272059 Msa0296760:three_prime_UTR
TTATAGTAGATGCTTGATAA+TGG 0.494407 2_3:-50271333 Msa0296760:three_prime_UTR
TAGGAGAAGAAGGTGGCAGA+GGG 0.494590 2_3:-50272025 Msa0296760:three_prime_UTR
CTCCCACCTCACCACTATCA+TGG 0.495212 2_3:+50272076 None:intergenic
GAGAAGAAGGTGGCAGAGGG+AGG 0.498422 2_3:-50272022 Msa0296760:intron
GGTTTAAACTGAACTATGGC+AGG 0.500639 2_3:-50271488 Msa0296760:three_prime_UTR
ATGAGCAAGTGTGCTGCATA+TGG 0.501067 2_3:-50270995 Msa0296760:three_prime_UTR
AGTGTGCTGCATATGGCATT+TGG 0.502436 2_3:-50270988 Msa0296760:three_prime_UTR
ATACCATTCCCTACACCAAA+AGG 0.504862 2_3:+50271109 None:intergenic
AGGAGGTTTAAACTGAACTA+TGG 0.505792 2_3:-50271492 Msa0296760:three_prime_UTR
CAATGACGGTGTCTGAGGAC+GGG 0.511301 2_3:-50272102 Msa0296760:three_prime_UTR
GAATTAATTCTAGATGGAGA+TGG 0.517450 2_3:-50277093 None:intergenic
CGAGGTGGTGGTATGATTTG+AGG 0.518770 2_3:-50272134 Msa0296760:three_prime_UTR
GGCTTTGACAAGGTCAGCGG+TGG 0.545196 2_3:-50271407 Msa0296760:three_prime_UTR
TGATTTGTACTCTATGGTAG+AGG 0.546200 2_3:-50277000 Msa0296760:CDS
GAGAAATAGAAAATGAAAGA+TGG 0.546411 2_3:-50271518 Msa0296760:three_prime_UTR
GCAATGACGGTGTCTGAGGA+CGG 0.548919 2_3:-50272103 Msa0296760:three_prime_UTR
ATGATTTGAGAGCGAGGTGG+TGG 0.550445 2_3:-50272146 Msa0296760:three_prime_UTR
AGGACGGGCAGCCATGATAG+TGG 0.551298 2_3:-50272087 Msa0296760:three_prime_UTR
GAGAACCACATCCTTGAAGC+TGG 0.555008 2_3:-50271283 Msa0296760:three_prime_UTR
TAGAAAATGAAAGATGGTCC+AGG 0.561434 2_3:-50271512 Msa0296760:three_prime_UTR
GAGAGCAACGGAGGTTGGAG+AGG 0.562647 2_3:-50272054 Msa0296760:three_prime_UTR
CAGCCATGATAGTGGTGAGG+TGG 0.566700 2_3:-50272079 Msa0296760:three_prime_UTR
CGAAAGCAGCATATCACTAT+GGG 0.571952 2_3:-50272250 Msa0296760:CDS
GGTGGTTACGGAGGTGGTGA+CGG 0.577502 2_3:-50271461 Msa0296760:three_prime_UTR
GGTGGTGACGGTGCCAGAAG+AGG 0.583848 2_3:-50271449 Msa0296760:three_prime_UTR
TGCGACTCACTAAGAAAAGG+TGG 0.584679 2_3:-50272213 Msa0296760:CDS
TGACAAGGTCAGCGGTGGAG+TGG 0.588046 2_3:-50271402 Msa0296760:three_prime_UTR
GGTATGATTTGAGGTGAGGA+TGG 0.589014 2_3:-50272125 Msa0296760:three_prime_UTR
AGTTGCGACTCACTAAGAAA+AGG 0.593642 2_3:-50272216 Msa0296760:CDS
AGGCGTAATCAGAATCATGT+TGG 0.594161 2_3:-50271141 Msa0296760:three_prime_UTR
CTTAAAGTGAACATACGTGC+TGG 0.595313 2_3:-50272286 Msa0296760:intron
CTCTATGGTAGAGGGAAGTG+AGG 0.601355 2_3:-50276991 Msa0296760:CDS
GGTGAGGTGGGAGAGAGCAA+CGG 0.601847 2_3:-50272066 Msa0296760:three_prime_UTR
GCAGGATTCGGTGGTTACGG+AGG 0.603271 2_3:-50271470 Msa0296760:three_prime_UTR
AGCCATGATAGTGGTGAGGT+GGG 0.604715 2_3:-50272078 Msa0296760:three_prime_UTR
CTAAAAGATGCTAAGCGTGT+AGG 0.605875 2_3:+50271236 None:intergenic
TTTGATTGGTGGCTTTGACA+AGG 0.607573 2_3:-50271417 Msa0296760:three_prime_UTR
AGTGAAGCTGCTAGTAAATG+GGG 0.608893 2_3:-50276897 Msa0296760:CDS
TTAAAGTGAACATACGTGCT+GGG 0.612799 2_3:-50272285 Msa0296760:intron
GATTTGTACTCTATGGTAGA+GGG 0.615535 2_3:-50276999 Msa0296760:CDS
TGAACTATGGCAGGATTCGG+TGG 0.619045 2_3:-50271479 Msa0296760:three_prime_UTR
TGTCTTAGATTGGTAGCACA+TGG 0.619314 2_3:+50276723 None:intergenic
TGGTGGTATGATTTGAGGTG+AGG 0.620316 2_3:-50272129 Msa0296760:three_prime_UTR
AAGGTGGGAATAAACCATGA+TGG 0.621476 2_3:-50272197 Msa0296760:exon
GGTGGCTTTGACAAGGTCAG+CGG 0.623212 2_3:-50271410 Msa0296760:three_prime_UTR
TGAGGTGAGGATGGCAATGA+CGG 0.637651 2_3:-50272116 Msa0296760:three_prime_UTR
GATGGCAATGACGGTGTCTG+AGG 0.638923 2_3:-50272107 Msa0296760:three_prime_UTR
GAGTTAATAGGAGAAGAAGG+TGG 0.646429 2_3:-50272032 Msa0296760:three_prime_UTR
GCGACTCACTAAGAAAAGGT+GGG 0.647264 2_3:-50272212 Msa0296760:CDS
CCAACACATAACTCTGAGGT+CGG 0.649930 2_3:-50276646 Msa0296760:CDS
CCGACCTCAGAGTTATGTGT+TGG 0.651701 2_3:+50276646 None:intergenic
CTGATCATGATTTGAGAGCG+AGG 0.671210 2_3:-50272152 Msa0296760:three_prime_UTR
GAGGTGGGAGAGAGCAACGG+AGG 0.689396 2_3:-50272063 Msa0296760:three_prime_UTR
GGGCAGCCATGATAGTGGTG+AGG 0.692492 2_3:-50272082 Msa0296760:three_prime_UTR
AAAATGAAAGATGGTCCAGG+AGG 0.692780 2_3:-50271509 Msa0296760:three_prime_UTR
AGTAATGTAGTAACACCATG+AGG 0.717554 2_3:+50271027 None:intergenic
TGGACCAACACATAACTCTG+AGG 0.727255 2_3:-50276650 Msa0296760:CDS
ATCATGATTTGAGAGCGAGG+TGG 0.795850 2_3:-50272149 Msa0296760:three_prime_UTR
AGATTGAATTGTGAACAACA+TGG 0.838604 2_3:-50272418 Msa0296760:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAATATATTAAAA+AGG + chr2_3:50272883-50272902 None:intergenic 0.0%
!!! TAATTAAGAAAATAGATTTT+TGG + chr2_3:50271882-50271901 None:intergenic 10.0%
!!! AAAATTATCTATTGTTTTAT+TGG + chr2_3:50272035-50272054 None:intergenic 10.0%
!!! TTTTTTTTTTTACGTTAATA+TGG - chr2_3:50272819-50272838 Msa0296760:intron 10.0%
!!! GATATTAGATATATATTTTT+AGG + chr2_3:50273680-50273699 None:intergenic 10.0%
!! AATTTAAAAGATATAATTAG+AGG + chr2_3:50274139-50274158 None:intergenic 10.0%
!! TAAATAAAATATAATACAAG+AGG - chr2_3:50274203-50274222 Msa0296760:intron 10.0%
!! TAAGATAGATATTAATAATT+TGG + chr2_3:50274401-50274420 None:intergenic 10.0%
!!! GTATTGTATATCTTTAAAAA+GGG + chr2_3:50270865-50270884 None:intergenic 15.0%
!! TTCTTTATTACCTATAATAA+TGG - chr2_3:50271517-50271536 Msa0296760:three_prime_UTR 15.0%
!!! AAAAAAAAAGTTGTTTGTTA+TGG - chr2_3:50271685-50271704 Msa0296760:intron 15.0%
!!! AAAAAAAAGTTGTTTGTTAT+GGG - chr2_3:50271686-50271705 Msa0296760:intron 15.0%
!! TTTATTGGTAAATTAAAATG+AGG - chr2_3:50271836-50271855 Msa0296760:intron 15.0%
!! TTATTGGTAAATTAAAATGA+GGG - chr2_3:50271837-50271856 Msa0296760:intron 15.0%
!!! AGTTTAATTTTAAGTTGAAA+TGG + chr2_3:50271971-50271990 None:intergenic 15.0%
!! AAAAAAATATTTCAACAACA+CGG - chr2_3:50271991-50272010 Msa0296760:intron 15.0%
!! ACAGAATATTATTTATTTGA+TGG - chr2_3:50272780-50272799 Msa0296760:intron 15.0%
!! AAAATATATTAAAAAGGCAA+AGG + chr2_3:50272877-50272896 None:intergenic 15.0%
!!! TGTCTTTTTTAAAAATGATA+AGG - chr2_3:50272947-50272966 Msa0296760:intron 15.0%
!!! GTCTTTTTTAAAAATGATAA+GGG - chr2_3:50272948-50272967 Msa0296760:intron 15.0%
!! TCAAATAGTAAATAAAGTTA+GGG + chr2_3:50273029-50273048 None:intergenic 15.0%
!! ATCAAATAGTAAATAAAGTT+AGG + chr2_3:50273030-50273049 None:intergenic 15.0%
!! ATAGATATTAATAATTTGGA+GGG + chr2_3:50274397-50274416 None:intergenic 15.0%
!! CAATGAAAAAAATAGTATTT+AGG + chr2_3:50275106-50275125 None:intergenic 15.0%
!!! TTAGTTTCTTTAATTTCAAT+TGG - chr2_3:50275167-50275186 Msa0296760:intron 15.0%
!!! TAGTTTCTTTAATTTCAATT+GGG - chr2_3:50275168-50275187 Msa0296760:intron 15.0%
!! AAAAAAAAGATTATAAGGAA+AGG + chr2_3:50275991-50276010 None:intergenic 15.0%
!! TATATATTCAAGATTGTAAA+TGG - chr2_3:50276208-50276227 Msa0296760:intron 15.0%
!! ATATATTCAAGATTGTAAAT+GGG - chr2_3:50276209-50276228 Msa0296760:intron 15.0%
!!! TTAGTTTGAGTTTTATATTT+TGG - chr2_3:50276704-50276723 Msa0296760:CDS 15.0%
!!! ATTATGAACTTTATGTATTT+TGG - chr2_3:50276833-50276852 Msa0296760:CDS 15.0%
!!! ATCATAGATCATTTTTTAAA+AGG + chr2_3:50276995-50277014 None:intergenic 15.0%
!! TAAAAAATGATCTATGATTA+AGG - chr2_3:50276997-50277016 Msa0296760:CDS 15.0%
!!! GGTATTGTATATCTTTAAAA+AGG + chr2_3:50270866-50270885 None:intergenic 20.0%
!! TTCTTTCAGATTATTAATCA+TGG - chr2_3:50271048-50271067 Msa0296760:three_prime_UTR 20.0%
!!! TCTATTATTGTTTGTTTTTG+AGG - chr2_3:50271309-50271328 Msa0296760:three_prime_UTR 20.0%
!!! CTATTATTGTTTGTTTTTGA+GGG - chr2_3:50271310-50271329 Msa0296760:three_prime_UTR 20.0%
!! TATATAATGATTACTCTTCA+TGG + chr2_3:50271545-50271564 None:intergenic 20.0%
!! AGAGATATAATGTGTAAAAA+AGG - chr2_3:50271709-50271728 Msa0296760:intron 20.0%
!! TTTCTCTCATAATAAACAAT+TGG + chr2_3:50271757-50271776 None:intergenic 20.0%
!! TTTATGTGTTGAATTATGAT+AGG + chr2_3:50271922-50271941 None:intergenic 20.0%
!! ATTGTATAGGAATATGTATT+GGG + chr2_3:50272067-50272086 None:intergenic 20.0%
!! ATTATAAATTCACACATAAG+TGG - chr2_3:50272616-50272635 Msa0296760:intron 20.0%
!! CAAATAGTAAATAAAGTTAG+GGG + chr2_3:50273028-50273047 None:intergenic 20.0%
!!! TTTTTTACTTCATAACCTTA+AGG + chr2_3:50273277-50273296 None:intergenic 20.0%
!! ATGTACAATGAAATAATAGA+TGG + chr2_3:50273338-50273357 None:intergenic 20.0%
!! TTATTTCATTGTACATTACA+AGG - chr2_3:50273342-50273361 Msa0296760:intron 20.0%
!! TATCTAAAAATGACATTTCA+AGG - chr2_3:50273492-50273511 Msa0296760:intron 20.0%
!!! TAAAAATTTGCATCTTTTAG+AGG + chr2_3:50273541-50273560 None:intergenic 20.0%
!!! TAATATTGGTGATTTATTTC+AGG - chr2_3:50274088-50274107 Msa0296760:intron 20.0%
!!! TTTTTTCCTTTTGACAAATA+AGG - chr2_3:50274176-50274195 Msa0296760:intron 20.0%
!!! TATATACCTTATTTGTCAAA+AGG + chr2_3:50274185-50274204 None:intergenic 20.0%
!! GATAGATATTAATAATTTGG+AGG + chr2_3:50274398-50274417 None:intergenic 20.0%
!! AAAAAAATAGTATTTAGGAG+AGG + chr2_3:50275101-50275120 None:intergenic 20.0%
!! AATACACAAAAACAAATCAA+GGG + chr2_3:50275252-50275271 None:intergenic 20.0%
!! AAAAAAACATAACTTTAGAC+CGG + chr2_3:50275275-50275294 None:intergenic 20.0%
!! AAGTTACAATTTGACAATAA+AGG + chr2_3:50275354-50275373 None:intergenic 20.0%
!! AAGAAATGAAAAAGAAAATG+AGG + chr2_3:50275946-50275965 None:intergenic 20.0%
!! ATATATTTACAAGTGTTTGT+TGG - chr2_3:50276067-50276086 Msa0296760:intron 20.0%
!! AGAAAAATAAATCACAAAGA+TGG + chr2_3:50276184-50276203 None:intergenic 20.0%
!!! TTGGTTTCAATCAATTTTTT+TGG - chr2_3:50276967-50276986 Msa0296760:CDS 20.0%
!! TTGTATATCTTTAAAAAGGG+AGG + chr2_3:50270862-50270881 None:intergenic 25.0%
! AAAGATATACAATACCCTAT+TGG - chr2_3:50270870-50270889 Msa0296760:three_prime_UTR 25.0%
!!! TCCAAGATTTTTTTCCAATA+GGG + chr2_3:50270887-50270906 None:intergenic 25.0%
!! AGAAAATGATTTGTACTCTA+TGG - chr2_3:50270915-50270934 Msa0296760:three_prime_UTR 25.0%
!!! AACTTTTCAAGATCAATCAA+AGG + chr2_3:50270961-50270980 None:intergenic 25.0%
!! CTCTTTCTTTTCAATCAAAT+TGG + chr2_3:50271789-50271808 None:intergenic 25.0%
! TTTGATTGAAAAGAAAGAGA+AGG - chr2_3:50271790-50271809 Msa0296760:intron 25.0%
! CATTGTATAGGAATATGTAT+TGG + chr2_3:50272068-50272087 None:intergenic 25.0%
! TTCTACTTTGTCCATAATTT+AGG + chr2_3:50272106-50272125 None:intergenic 25.0%
!!! TGTTTCTTTTTTTCAACTGT+TGG - chr2_3:50272173-50272192 Msa0296760:three_prime_UTR 25.0%
!! ATCTTCCTTGATGTATATTT+TGG - chr2_3:50272295-50272314 Msa0296760:intron 25.0%
!!! TCGTTGGACATTTTTAAAAT+CGG - chr2_3:50272444-50272463 Msa0296760:CDS 25.0%
! TAACTACTACTGAAATTGTT+AGG + chr2_3:50272678-50272697 None:intergenic 25.0%
! AGTAGTTAAACTAGAATTTG+TGG - chr2_3:50272690-50272709 Msa0296760:intron 25.0%
!!! ACCTTGGAAATTTTTTTATG+TGG - chr2_3:50272974-50272993 Msa0296760:intron 25.0%
! TCCACATAAAAAAATTTCCA+AGG + chr2_3:50272978-50272997 None:intergenic 25.0%
! ATGTGGATAATAGATTTATG+TGG - chr2_3:50272991-50273010 Msa0296760:intron 25.0%
!! TAGCAAGCTTTTCTTTTTTT+GGG - chr2_3:50273053-50273072 Msa0296760:intron 25.0%
! TCACTGTATAAAATGTAACT+AGG - chr2_3:50273106-50273125 Msa0296760:intron 25.0%
!! TTTTCTCTTAAAACAAACGA+AGG + chr2_3:50273189-50273208 None:intergenic 25.0%
! GATTTCAAATGTAATACTCA+TGG + chr2_3:50273252-50273271 None:intergenic 25.0%
!! TACATTTGAAATCTTCCTTA+AGG - chr2_3:50273259-50273278 Msa0296760:intron 25.0%
! TTACATATGACAACAAACTA+AGG + chr2_3:50273729-50273748 None:intergenic 25.0%
!! TGTAATTTTACTATGCCTTA+TGG - chr2_3:50273744-50273763 Msa0296760:intron 25.0%
! AATTGATGAAAGATGGAAAA+TGG - chr2_3:50274030-50274049 Msa0296760:intron 25.0%
! AAAAAATCATGTAAGACTTG+CGG + chr2_3:50274238-50274257 None:intergenic 25.0%
!! ATTAATAATTTGGAGGGTTT+TGG + chr2_3:50274391-50274410 None:intergenic 25.0%
! AAAACAAATGATTCCAAAGA+AGG + chr2_3:50274540-50274559 None:intergenic 25.0%
! ACATGAAGATTGAATGAATT+TGG + chr2_3:50274773-50274792 None:intergenic 25.0%
! AAATTCATTCAATCTTCATG+TGG - chr2_3:50274772-50274791 Msa0296760:intron 25.0%
!!! TTTAACGAATGTCATTTTGT+GGG + chr2_3:50275028-50275047 None:intergenic 25.0%
!!! TTTTAACGAATGTCATTTTG+TGG + chr2_3:50275029-50275048 None:intergenic 25.0%
! GAATACACAAAAACAAATCA+AGG + chr2_3:50275253-50275272 None:intergenic 25.0%
!!! TGATTTGTTTTTGTGTATTC+CGG - chr2_3:50275253-50275272 Msa0296760:intron 25.0%
!!! GGTCTAAAGTTATGTTTTTT+TGG - chr2_3:50275274-50275293 Msa0296760:intron 25.0%
! AGTAACATTGACACAAAATA+GGG + chr2_3:50275424-50275443 None:intergenic 25.0%
! AAGTAACATTGACACAAAAT+AGG + chr2_3:50275425-50275444 None:intergenic 25.0%
!!! GAGTTGATTTTATGCTAATT+TGG - chr2_3:50275566-50275585 Msa0296760:intron 25.0%
! GGAGGAAAAAAAAGATTATA+AGG + chr2_3:50275996-50276015 None:intergenic 25.0%
! GAGAAATAGAAAATGAAAGA+TGG - chr2_3:50276403-50276422 Msa0296760:intron 25.0%
! ATTGCTAGTTAGTTGTAAAA+AGG + chr2_3:50276564-50276583 None:intergenic 25.0%
! TTATAGTAGATGCTTGATAA+TGG - chr2_3:50276588-50276607 Msa0296760:intron 25.0%
ACCCTATTGGAAAAAAATCT+TGG - chr2_3:50270883-50270902 Msa0296760:three_prime_UTR 30.0%
!!! CTCCAAGATTTTTTTCCAAT+AGG + chr2_3:50270888-50270907 None:intergenic 30.0%
TGGAATTTCAAATGAGATTC+TGG - chr2_3:50271068-50271087 Msa0296760:three_prime_UTR 30.0%
ATCTGTCAGAGAAAAATGAA+AGG + chr2_3:50271241-50271260 None:intergenic 30.0%
TCTGACAGATATACCAAATA+TGG - chr2_3:50271251-50271270 Msa0296760:three_prime_UTR 30.0%
AAAATACACACACACAACTT+TGG - chr2_3:50271449-50271468 Msa0296760:three_prime_UTR 30.0%
CTTCATGGATCCATTATTAT+AGG + chr2_3:50271530-50271549 None:intergenic 30.0%
ACATTGTGTGACATAAGTTT+AGG + chr2_3:50271610-50271629 None:intergenic 30.0%
TGTGTAAAAAAGGAGTTTGT+TGG - chr2_3:50271719-50271738 Msa0296760:intron 30.0%
AATCAAGTCTCACATTGTAT+AGG + chr2_3:50272080-50272099 None:intergenic 30.0%
ACTTGATTGAGCCTAAATTA+TGG - chr2_3:50272092-50272111 Msa0296760:three_prime_UTR 30.0%
!!! TCTTTTTTTCAACTGTTGGT+TGG - chr2_3:50272177-50272196 Msa0296760:three_prime_UTR 30.0%
! TTTTCAACCACAATTAAGTG+TGG - chr2_3:50272210-50272229 Msa0296760:CDS 30.0%
ACTCACCAAAATATACATCA+AGG + chr2_3:50272303-50272322 None:intergenic 30.0%
CTTAAAAAAAATAGCGTCGT+TGG - chr2_3:50272428-50272447 Msa0296760:CDS 30.0%
AGTTGAATCGCTTATTATGT+TGG + chr2_3:50272475-50272494 None:intergenic 30.0%
GACAATATCTACTACATATG+TGG - chr2_3:50272557-50272576 Msa0296760:intron 30.0%
AATTGTTAGGCTTAATACCA+TGG + chr2_3:50272665-50272684 None:intergenic 30.0%
! AAACTAGAATTTGTGGATTG+TGG - chr2_3:50272697-50272716 Msa0296760:intron 30.0%
! ATTTGATGGATGCACTAATA+TGG - chr2_3:50272794-50272813 Msa0296760:intron 30.0%
! AAAAAGGCAAAGGTCTATTT+TGG + chr2_3:50272867-50272886 None:intergenic 30.0%
! CTAGCAAGCTTTTCTTTTTT+TGG - chr2_3:50273052-50273071 Msa0296760:intron 30.0%
AAAGTCATCCACAATAGTAA+TGG + chr2_3:50273133-50273152 None:intergenic 30.0%
CTTAAAACAAACGAAGGAAA+TGG + chr2_3:50273183-50273202 None:intergenic 30.0%
! ACAAGGACAACAAGTAATTT+TGG - chr2_3:50273359-50273378 Msa0296760:intron 30.0%
! CAAGGACAACAAGTAATTTT+GGG - chr2_3:50273360-50273379 Msa0296760:intron 30.0%
ACGTTGTGTGTATTAAGTTT+AGG + chr2_3:50273573-50273592 None:intergenic 30.0%
GGATTTCATATTCACTTTGA+GGG + chr2_3:50273856-50273875 None:intergenic 30.0%
TGGATTTCATATTCACTTTG+AGG + chr2_3:50273857-50273876 None:intergenic 30.0%
GTAATTCTCTTGAAAATGGT+TGG + chr2_3:50273877-50273896 None:intergenic 30.0%
GCAAGTAATTCTCTTGAAAA+TGG + chr2_3:50273881-50273900 None:intergenic 30.0%
! AGTCGAATGAAAGAACTTTT+TGG + chr2_3:50273903-50273922 None:intergenic 30.0%
! CAAACACTTCTGAAGATATA+GGG + chr2_3:50273944-50273963 None:intergenic 30.0%
TATCTTGATAGAGTATGGTA+AGG + chr2_3:50273995-50274014 None:intergenic 30.0%
AACACTATCTTGATAGAGTA+TGG + chr2_3:50274000-50274019 None:intergenic 30.0%
ATACTCTATCAAGATAGTGT+TGG - chr2_3:50273999-50274018 Msa0296760:intron 30.0%
TACTCTATCAAGATAGTGTT+GGG - chr2_3:50274000-50274019 Msa0296760:intron 30.0%
! ATATTAACAACTAGAGCACT+TGG + chr2_3:50274074-50274093 None:intergenic 30.0%
AGTGCTCTAGTTGTTAATAT+TGG - chr2_3:50274074-50274093 Msa0296760:intron 30.0%
AAAAATCATGTAAGACTTGC+GGG + chr2_3:50274237-50274256 None:intergenic 30.0%
TAGGAATGTTAACTAGGATT+AGG + chr2_3:50274426-50274445 None:intergenic 30.0%
TGCTATTAGGAATGTTAACT+AGG + chr2_3:50274432-50274451 None:intergenic 30.0%
AAAAACAGTAGAATTAGGGT+TGG + chr2_3:50274458-50274477 None:intergenic 30.0%
! AACCCTAATTCTACTGTTTT+TGG - chr2_3:50274457-50274476 Msa0296760:intron 30.0%
AGCCAAAAACAGTAGAATTA+GGG + chr2_3:50274462-50274481 None:intergenic 30.0%
GAGATGAAAACGATAACAAT+GGG + chr2_3:50274648-50274667 None:intergenic 30.0%
TGAGATGAAAACGATAACAA+TGG + chr2_3:50274649-50274668 None:intergenic 30.0%
! GATTTTTATTCTCAGCACAT+AGG - chr2_3:50275144-50275163 Msa0296760:intron 30.0%
TTTCACTTAGATTTGATCTG+TGG - chr2_3:50275300-50275319 Msa0296760:intron 30.0%
! TCGAAATTTGTGTTTTCAAC+AGG - chr2_3:50275449-50275468 Msa0296760:intron 30.0%
!! TTTGTGAGTTCTAAGATAGA+TGG - chr2_3:50275476-50275495 Msa0296760:intron 30.0%
AGATTGAATTGTGAACAACA+TGG - chr2_3:50275503-50275522 Msa0296760:intron 30.0%
ATGCTCTTTAATCCATTTAG+AGG - chr2_3:50276103-50276122 Msa0296760:intron 30.0%
! ATGCAATTGATTCCTCTAAA+TGG + chr2_3:50276118-50276137 None:intergenic 30.0%
AATTAGAGAATGATACCTAC+TGG + chr2_3:50276273-50276292 None:intergenic 30.0%
GGTATCATTCTCTAATTGTT+TGG - chr2_3:50276276-50276295 Msa0296760:intron 30.0%
ATAGATAGTATTCTTCTCCA+AGG - chr2_3:50276375-50276394 Msa0296760:intron 30.0%
! TTTCTATTTCTCTACTACCT+TGG + chr2_3:50276395-50276414 None:intergenic 30.0%
! TTTGTCAACTATCTCTGAAA+AGG - chr2_3:50276616-50276635 Msa0296760:intron 30.0%
!! AGTTGATGTACTGAACATTT+TGG - chr2_3:50276730-50276749 Msa0296760:CDS 30.0%
! ATGATTAAGGTTTGTTCGTT+AGG - chr2_3:50277010-50277029 Msa0296760:CDS 30.0%
! TGATTTGTACTCTATGGTAG+AGG - chr2_3:50270921-50270940 Msa0296760:three_prime_UTR 35.0%
GATTTGTACTCTATGGTAGA+GGG - chr2_3:50270922-50270941 Msa0296760:three_prime_UTR 35.0%
! TTCATGCACTCTTCTCTTTT+AGG + chr2_3:50270997-50271016 None:intergenic 35.0%
TAAGTGAAGCTGCTAGTAAA+TGG - chr2_3:50271022-50271041 Msa0296760:three_prime_UTR 35.0%
AAGTGAAGCTGCTAGTAAAT+GGG - chr2_3:50271023-50271042 Msa0296760:three_prime_UTR 35.0%
!! GCAGATAACTTGTTCACAAA+AGG + chr2_3:50271132-50271151 None:intergenic 35.0%
TGTCTCCAAAAACATACAGA+TGG - chr2_3:50271169-50271188 Msa0296760:three_prime_UTR 35.0%
GTCTCCAAAAACATACAGAT+GGG - chr2_3:50271170-50271189 Msa0296760:three_prime_UTR 35.0%
TCTCCAAAAACATACAGATG+GGG - chr2_3:50271171-50271190 Msa0296760:three_prime_UTR 35.0%
! GTTATGTGTTGGTCCATATT+TGG + chr2_3:50271267-50271286 None:intergenic 35.0%
ATTGTGGTTGAAAAGCCAAA+TGG + chr2_3:50272204-50272223 None:intergenic 35.0%
CTTTAGATTAGCACACTCTA+AGG + chr2_3:50272259-50272278 None:intergenic 35.0%
CTTAGAGTGTGCTAATCTAA+AGG - chr2_3:50272257-50272276 Msa0296760:CDS 35.0%
! AATTTGTGGATTGTGGAACT+CGG - chr2_3:50272704-50272723 Msa0296760:intron 35.0%
!! GGTCTATTTTGGATCTCTTT+GGG + chr2_3:50272856-50272875 None:intergenic 35.0%
!! AGGTCTATTTTGGATCTCTT+TGG + chr2_3:50272857-50272876 None:intergenic 35.0%
AAAATGATAAGGGTCAACCT+TGG - chr2_3:50272958-50272977 Msa0296760:intron 35.0%
AACTAGGTCCATTACTATTG+TGG - chr2_3:50273122-50273141 Msa0296760:intron 35.0%
TCACAAAGTGTACTTCCATA+AGG + chr2_3:50273762-50273781 None:intergenic 35.0%
TTCTTGTTGCAAAAGCTTCA+AGG + chr2_3:50273797-50273816 None:intergenic 35.0%
! TGAAGCTTTTGCAACAAGAA+TGG - chr2_3:50273797-50273816 Msa0296760:intron 35.0%
! AAGAATCTCCACCAAGTTTT+CGG + chr2_3:50273832-50273851 None:intergenic 35.0%
! CCAAACACTTCTGAAGATAT+AGG + chr2_3:50273945-50273964 None:intergenic 35.0%
!! CCTATATCTTCAGAAGTGTT+TGG - chr2_3:50273942-50273961 Msa0296760:intron 35.0%
ACTCTATCAAGATAGTGTTG+GGG - chr2_3:50274001-50274020 Msa0296760:intron 35.0%
GGATTGCAATTGATGAAAGA+TGG - chr2_3:50274023-50274042 Msa0296760:intron 35.0%
GAGCCAAAAACAGTAGAATT+AGG + chr2_3:50274463-50274482 None:intergenic 35.0%
TCCATTGACAATGAGATCAA+CGG + chr2_3:50274500-50274519 None:intergenic 35.0%
TGGAGAGAATAAGAGAAAAG+AGG + chr2_3:50274753-50274772 None:intergenic 35.0%
! ATGTTTAGGGTTGAAGTTGT+CGG + chr2_3:50274807-50274826 None:intergenic 35.0%
!!! TCGCTTCAATCGATGTTTTT+TGG - chr2_3:50274955-50274974 Msa0296760:intron 35.0%
ATCATCTTCCTCATGGAAAT+CGG + chr2_3:50274983-50275002 None:intergenic 35.0%
TTTCCATGAGGAAGATGATT+CGG - chr2_3:50274984-50275003 Msa0296760:intron 35.0%
AGTATTTAGGAGAGGAAGAA+GGG + chr2_3:50275093-50275112 None:intergenic 35.0%
TAGTATTTAGGAGAGGAAGA+AGG + chr2_3:50275094-50275113 None:intergenic 35.0%
!!! GGTGAGTTTTGTTTAATCGT+TGG - chr2_3:50275524-50275543 Msa0296760:intron 35.0%
CAAATGAGCATGGAATCAAA+CGG + chr2_3:50275607-50275626 None:intergenic 35.0%
AGCACAAAATCAAATGAGCA+TGG + chr2_3:50275617-50275636 None:intergenic 35.0%
TTAAAGTGAACATACGTGCT+GGG - chr2_3:50275636-50275655 Msa0296760:intron 35.0%
! TGATCAGTTCACAGAAGTTT+TGG + chr2_3:50275756-50275775 None:intergenic 35.0%
CCATTCAATAGTGAAGTGAA+GGG + chr2_3:50276017-50276036 None:intergenic 35.0%
GGAGAAGAATACTATCTATG+AGG + chr2_3:50276374-50276393 None:intergenic 35.0%
TAGAAAATGAAAGATGGTCC+AGG - chr2_3:50276409-50276428 Msa0296760:intron 35.0%
ATAGTTCAGTTTAAACCTCC+TGG + chr2_3:50276430-50276449 None:intergenic 35.0%
AGGAGGTTTAAACTGAACTA+TGG - chr2_3:50276429-50276448 Msa0296760:intron 35.0%
!! AGAGGAACGAAGATTTTGAT+TGG - chr2_3:50276490-50276509 Msa0296760:intron 35.0%
!! CATTTTGGTATAGTTTGTCG+AGG - chr2_3:50276745-50276764 Msa0296760:CDS 35.0%
! ATTTTGCATTGCATTCCTCA+TGG - chr2_3:50276879-50276898 Msa0296760:CDS 35.0%
AGTAATGTAGTAACACCATG+AGG + chr2_3:50276897-50276916 None:intergenic 35.0%
AGCACACTTGCTCATAAAAA+AGG + chr2_3:50276921-50276940 None:intergenic 35.0%
AGTGAAGCTGCTAGTAAATG+GGG - chr2_3:50271024-50271043 Msa0296760:three_prime_UTR 40.0%
CTCCAAAAACATACAGATGG+GGG - chr2_3:50271172-50271191 Msa0296760:three_prime_UTR 40.0%
! TTCCCCCATCTGTATGTTTT+TGG + chr2_3:50271177-50271196 None:intergenic 40.0%
! TGTCTTAGATTGGTAGCACA+TGG + chr2_3:50271201-50271220 None:intergenic 40.0%
CCAAGAAAGCTGTCTTAGAT+TGG + chr2_3:50271211-50271230 None:intergenic 40.0%
! CCAATCTAAGACAGCTTTCT+TGG - chr2_3:50271208-50271227 Msa0296760:three_prime_UTR 40.0%
CAACCACAATTAAGTGTGGT+TGG - chr2_3:50272214-50272233 Msa0296760:CDS 40.0%
TGTGCTAATCTAAAGGTCTC+CGG - chr2_3:50272264-50272283 Msa0296760:CDS 40.0%
TCAAGGAAGATCAAACCTAC+CGG + chr2_3:50272286-50272305 None:intergenic 40.0%
CTCCGACTCTGTCTTTAAAT+GGG - chr2_3:50272341-50272360 Msa0296760:intron 40.0%
!! ATTGGACTCATCGGATTAGT+CGG - chr2_3:50272385-50272404 Msa0296760:intron 40.0%
TCACACATAAGTGGAGTTGT+CGG - chr2_3:50272625-50272644 Msa0296760:intron 40.0%
TTAGGCTTAATACCATGGTC+GGG + chr2_3:50272660-50272679 None:intergenic 40.0%
GTTAGGCTTAATACCATGGT+CGG + chr2_3:50272661-50272680 None:intergenic 40.0%
! TTTGGATCTCTTTGGGAACT+TGG + chr2_3:50272849-50272868 None:intergenic 40.0%
TCAAAGAGATGTCAGCTAAG+GGG + chr2_3:50273304-50273323 None:intergenic 40.0%
GTCAAAGAGATGTCAGCTAA+GGG + chr2_3:50273305-50273324 None:intergenic 40.0%
TGTCAAAGAGATGTCAGCTA+AGG + chr2_3:50273306-50273325 None:intergenic 40.0%
! ACTTCTGAAGATATAGGGCA+TGG + chr2_3:50273939-50273958 None:intergenic 40.0%
! CTCTATCAAGATAGTGTTGG+GGG - chr2_3:50274002-50274021 Msa0296760:intron 40.0%
! ACAACTAGAGCACTTGGATT+AGG + chr2_3:50274068-50274087 None:intergenic 40.0%
TCCTTTCTTCAGTTTGCACA+GGG - chr2_3:50274357-50274376 Msa0296760:intron 40.0%
TTCAGTTTGCACAGGGTAAT+GGG - chr2_3:50274364-50274383 Msa0296760:intron 40.0%
! ATCAACGGTCAGCATCATTT+TGG + chr2_3:50274485-50274504 None:intergenic 40.0%
ACCGTTGATCTCATTGTCAA+TGG - chr2_3:50274496-50274515 Msa0296760:intron 40.0%
TCAATTCTTAGCCAATGCCT+TGG + chr2_3:50274613-50274632 None:intergenic 40.0%
!! GGCATTGGCTAAGAATTGAA+AGG - chr2_3:50274614-50274633 Msa0296760:intron 40.0%
AGAAAGGAAGATGATGAGAG+GGG + chr2_3:50274688-50274707 None:intergenic 40.0%
GAGAAAGGAAGATGATGAGA+GGG + chr2_3:50274689-50274708 None:intergenic 40.0%
AGAGAAAGGAAGATGATGAG+AGG + chr2_3:50274690-50274709 None:intergenic 40.0%
ACGACTCAAGCAGATGTTTA+GGG + chr2_3:50274820-50274839 None:intergenic 40.0%
ATCGATGTCAGGTTTAGATG+CGG + chr2_3:50274896-50274915 None:intergenic 40.0%
!!! TTTTGGTTCCGATTTCCATG+AGG - chr2_3:50274972-50274991 Msa0296760:intron 40.0%
CTTAAAGTGAACATACGTGC+TGG - chr2_3:50275635-50275654 Msa0296760:intron 40.0%
ACGAAAGCAGCATATCACTA+TGG - chr2_3:50275670-50275689 Msa0296760:intron 40.0%
CGAAAGCAGCATATCACTAT+GGG - chr2_3:50275671-50275690 Msa0296760:intron 40.0%
AGTTGCGACTCACTAAGAAA+AGG - chr2_3:50275705-50275724 Msa0296760:intron 40.0%
AAGGTGGGAATAAACCATGA+TGG - chr2_3:50275724-50275743 Msa0296760:intron 40.0%
!!! AGTTTTGGAGAGAACCATCA+TGG + chr2_3:50275741-50275760 None:intergenic 40.0%
GAGGAGTTAATAGGAGAAGA+AGG - chr2_3:50275886-50275905 Msa0296760:intron 40.0%
GAGTTAATAGGAGAAGAAGG+TGG - chr2_3:50275889-50275908 Msa0296760:intron 40.0%
TTCAATAGTGAAGTGAAGGG+AGG + chr2_3:50276014-50276033 None:intergenic 40.0%
CCCTTCACTTCACTATTGAA+TGG - chr2_3:50276014-50276033 Msa0296760:intron 40.0%
GCCATTCAATAGTGAAGTGA+AGG + chr2_3:50276018-50276037 None:intergenic 40.0%
CTGCATGGCATAAAACTACA+TGG + chr2_3:50276240-50276259 None:intergenic 40.0%
ACTGGCATCATAAAACTGCA+TGG + chr2_3:50276255-50276274 None:intergenic 40.0%
!! TGCAGTTTTATGATGCCAGT+AGG - chr2_3:50276255-50276274 Msa0296760:intron 40.0%
AAAATGAAAGATGGTCCAGG+AGG - chr2_3:50276412-50276431 Msa0296760:intron 40.0%
GGTTTAAACTGAACTATGGC+AGG - chr2_3:50276433-50276452 Msa0296760:intron 40.0%
AACTGAACTATGGCAGGATT+CGG - chr2_3:50276439-50276458 Msa0296760:intron 40.0%
CAAAATCTTCGTTCCTCTTC+TGG + chr2_3:50276488-50276507 None:intergenic 40.0%
!!! GGAACGAAGATTTTGATTGG+TGG - chr2_3:50276493-50276512 Msa0296760:intron 40.0%
!! TTTGATTGGTGGCTTTGACA+AGG - chr2_3:50276504-50276523 Msa0296760:intron 40.0%
TTGAAGACTGCGACAACATA+TGG - chr2_3:50276661-50276680 Msa0296760:CDS 40.0%
CTAAAAGATGCTAAGCGTGT+AGG + chr2_3:50276688-50276707 None:intergenic 40.0%
!!! TGTCGAGGTGTTGTGTTTTA+AGG - chr2_3:50276760-50276779 Msa0296760:CDS 40.0%
AGGCGTAATCAGAATCATGT+TGG - chr2_3:50276780-50276799 Msa0296760:CDS 40.0%
!!! TGTTGGTAGTCTGAACCTTT+TGG - chr2_3:50276797-50276816 Msa0296760:CDS 40.0%
!! TAGTCTGAACCTTTTGGTGT+AGG - chr2_3:50276803-50276822 Msa0296760:CDS 40.0%
!! AGTCTGAACCTTTTGGTGTA+GGG - chr2_3:50276804-50276823 Msa0296760:CDS 40.0%
ATACCATTCCCTACACCAAA+AGG + chr2_3:50276815-50276834 None:intergenic 40.0%
GCATTTGGTTGCAACATACT+TGG - chr2_3:50276948-50276967 Msa0296760:CDS 40.0%
TGGACCAACACATAACTCTG+AGG - chr2_3:50271271-50271290 Msa0296760:three_prime_UTR 45.0%
!! CCAACACATAACTCTGAGGT+CGG - chr2_3:50271275-50271294 Msa0296760:three_prime_UTR 45.0%
! CAACTGTTGGTTGGTCCATT+TGG - chr2_3:50272186-50272205 Msa0296760:three_prime_UTR 45.0%
AGGCCAACCACACTTAATTG+TGG + chr2_3:50272220-50272239 None:intergenic 45.0%
CTAATCTAAAGGTCTCCGGT+AGG - chr2_3:50272268-50272287 Msa0296760:CDS 45.0%
GCTCCGACTCTGTCTTTAAA+TGG - chr2_3:50272340-50272359 Msa0296760:intron 45.0%
GGCCCATTTAAAGACAGAGT+CGG + chr2_3:50272346-50272365 None:intergenic 45.0%
!! CTGCTCTAGAAAGTGCTCAA+TGG - chr2_3:50272493-50272512 Msa0296760:intron 45.0%
CACACATAAGTGGAGTTGTC+GGG - chr2_3:50272626-50272645 Msa0296760:intron 45.0%
ACACATAAGTGGAGTTGTCG+GGG - chr2_3:50272627-50272646 Msa0296760:intron 45.0%
TAGGCTTAATACCATGGTCG+GGG + chr2_3:50272659-50272678 None:intergenic 45.0%
GTATCTCAAGTCAGCAAGCT+AGG + chr2_3:50273156-50273175 None:intergenic 45.0%
TCTGAAGATATAGGGCATGG+AGG + chr2_3:50273936-50273955 None:intergenic 45.0%
!! TTCAGAAGTGTTTGGCCTCT+TGG - chr2_3:50273950-50273969 Msa0296760:intron 45.0%
TAGTGTCACAATGAGCCAAG+AGG + chr2_3:50273968-50273987 None:intergenic 45.0%
CTCCTTTCTTCAGTTTGCAC+AGG - chr2_3:50274356-50274375 Msa0296760:intron 45.0%
ACCCTGTGCAAACTGAAGAA+AGG + chr2_3:50274361-50274380 None:intergenic 45.0%
CTTCAGTTTGCACAGGGTAA+TGG - chr2_3:50274363-50274382 Msa0296760:intron 45.0%
! TTAGGGTTGGCAGTGCTATT+AGG + chr2_3:50274445-50274464 None:intergenic 45.0%
AACGACTGATGAGCCTTCTT+TGG - chr2_3:50274524-50274543 Msa0296760:intron 45.0%
ATTGACCAAGATCTCGACAG+AGG + chr2_3:50274727-50274746 None:intergenic 45.0%
GACGACTCAAGCAGATGTTT+AGG + chr2_3:50274821-50274840 None:intergenic 45.0%
GGATGATTTGAGTGAACGGA+CGG + chr2_3:50274872-50274891 None:intergenic 45.0%
CGGAGGATGATTTGAGTGAA+CGG + chr2_3:50274876-50274895 None:intergenic 45.0%
TGAACAGCAACATCGATGTC+AGG + chr2_3:50274907-50274926 None:intergenic 45.0%
TCACCGAATCATCTTCCTCA+TGG + chr2_3:50274990-50275009 None:intergenic 45.0%
AGCATTCTGCAACCTTTCCA+TGG - chr2_3:50275056-50275075 Msa0296760:intron 45.0%
TGCGACTCACTAAGAAAAGG+TGG - chr2_3:50275708-50275727 Msa0296760:intron 45.0%
GCGACTCACTAAGAAAAGGT+GGG - chr2_3:50275709-50275728 Msa0296760:intron 45.0%
CTGATCATGATTTGAGAGCG+AGG - chr2_3:50275769-50275788 Msa0296760:intron 45.0%
ATCATGATTTGAGAGCGAGG+TGG - chr2_3:50275772-50275791 Msa0296760:intron 45.0%
! TGGTGGTATGATTTGAGGTG+AGG - chr2_3:50275792-50275811 Msa0296760:intron 45.0%
! GGTATGATTTGAGGTGAGGA+TGG - chr2_3:50275796-50275815 Msa0296760:intron 45.0%
GAGGTTGGAGAGGAGTTAAT+AGG - chr2_3:50275877-50275896 Msa0296760:intron 45.0%
TTCAACCAGCTTCAAGGATG+TGG + chr2_3:50276646-50276665 None:intergenic 45.0%
!! GAACCTTTTGGTGTAGGGAA+TGG - chr2_3:50276809-50276828 Msa0296760:CDS 45.0%
ATGAGCAAGTGTGCTGCATA+TGG - chr2_3:50276926-50276945 Msa0296760:CDS 45.0%
AGTGTGCTGCATATGGCATT+TGG - chr2_3:50276933-50276952 Msa0296760:CDS 45.0%
!! TTAAAAAAAAAGAAATTTAT+TGG - chr2_3:50271821-50271840 Msa0296760:intron 5.0%
!!! ATATTAGATATATATTTTTA+GGG + chr2_3:50273679-50273698 None:intergenic 5.0%
CTCTATGGTAGAGGGAAGTG+AGG - chr2_3:50270930-50270949 Msa0296760:three_prime_UTR 50.0%
CCGACCTCAGAGTTATGTGT+TGG + chr2_3:50271278-50271297 None:intergenic 50.0%
! GTTGGCCTAACAGCTGACTT+GGG - chr2_3:50272232-50272251 Msa0296760:CDS 50.0%
AAGGTCCCAAGTCAGCTGTT+AGG + chr2_3:50272240-50272259 None:intergenic 50.0%
GACGGTGGAATTGGACTCAT+CGG - chr2_3:50272376-50272395 Msa0296760:intron 50.0%
GGATACCCTTGCCGAAAACT+TGG - chr2_3:50273818-50273837 Msa0296760:intron 50.0%
TACCCTTGCCGAAAACTTGG+TGG - chr2_3:50273821-50273840 Msa0296760:intron 50.0%
! CTCCACCAAGTTTTCGGCAA+GGG + chr2_3:50273826-50273845 None:intergenic 50.0%
! TCTCCACCAAGTTTTCGGCA+AGG + chr2_3:50273827-50273846 None:intergenic 50.0%
ATCATGTAAGACTTGCGGGC+TGG + chr2_3:50274233-50274252 None:intergenic 50.0%
CTTGGAATTGAGCGGTGTGT+TGG + chr2_3:50274595-50274614 None:intergenic 50.0%
CAACACACCGCTCAATTCCA+AGG - chr2_3:50274593-50274612 Msa0296760:intron 50.0%
ACCGCTCAATTCCAAGGCAT+TGG - chr2_3:50274599-50274618 Msa0296760:intron 50.0%
GCCAATGCCTTGGAATTGAG+CGG + chr2_3:50274603-50274622 None:intergenic 50.0%
AGGAAGATGATGAGAGGGGA+GGG + chr2_3:50274684-50274703 None:intergenic 50.0%
AAGGAAGATGATGAGAGGGG+AGG + chr2_3:50274685-50274704 None:intergenic 50.0%
AGGCAAGGTAGAGCAGAGAA+AGG + chr2_3:50274704-50274723 None:intergenic 50.0%
! AACGGACGGTGTTAGAAGGA+AGG + chr2_3:50274858-50274877 None:intergenic 50.0%
! AGTGAACGGACGGTGTTAGA+AGG + chr2_3:50274862-50274881 None:intergenic 50.0%
GATGTCAGGTTTAGATGCGG+AGG + chr2_3:50274893-50274912 None:intergenic 50.0%
GTTGCGACGTTACCATGGAA+AGG + chr2_3:50275071-50275090 None:intergenic 50.0%
ATGATTTGAGAGCGAGGTGG+TGG - chr2_3:50275775-50275794 Msa0296760:intron 50.0%
! CGAGGTGGTGGTATGATTTG+AGG - chr2_3:50275787-50275806 Msa0296760:intron 50.0%
TGAGGTGAGGATGGCAATGA+CGG - chr2_3:50275805-50275824 Msa0296760:intron 50.0%
!! AGCCATGATAGTGGTGAGGT+GGG - chr2_3:50275843-50275862 Msa0296760:intron 50.0%
ATAGGAGAAGAAGGTGGCAG+AGG - chr2_3:50275895-50275914 Msa0296760:intron 50.0%
TAGGAGAAGAAGGTGGCAGA+GGG - chr2_3:50275896-50275915 Msa0296760:intron 50.0%
TGAACTATGGCAGGATTCGG+TGG - chr2_3:50276442-50276461 Msa0296760:intron 50.0%
!! ATGGCAGGATTCGGTGGTTA+CGG - chr2_3:50276448-50276467 Msa0296760:intron 50.0%
GAGAACCACATCCTTGAAGC+TGG - chr2_3:50276638-50276657 Msa0296760:CDS 50.0%
GCAGTCTTCAACCAGCTTCA+AGG + chr2_3:50276652-50276671 None:intergenic 50.0%
!! GGTTGGCCTAACAGCTGACT+TGG - chr2_3:50272231-50272250 Msa0296760:CDS 55.0%
TTTAAATGGGCCCCCGCAAG+TGG - chr2_3:50272354-50272373 Msa0296760:intron 55.0%
AATTCCACCGTCCACTTGCG+GGG + chr2_3:50272368-50272387 None:intergenic 55.0%
CAATTCCACCGTCCACTTGC+GGG + chr2_3:50272369-50272388 None:intergenic 55.0%
CCAATTCCACCGTCCACTTG+CGG + chr2_3:50272370-50272389 None:intergenic 55.0%
AGATCTCGACAGAGGAGGCA+AGG + chr2_3:50274719-50274738 None:intergenic 55.0%
TGCCTCCTCTGTCGAGATCT+TGG - chr2_3:50274719-50274738 Msa0296760:intron 55.0%
GACCAAGATCTCGACAGAGG+AGG + chr2_3:50274724-50274743 None:intergenic 55.0%
GAAGGGTTGCGACGTTACCA+TGG + chr2_3:50275076-50275095 None:intergenic 55.0%
GATGGCAATGACGGTGTCTG+AGG - chr2_3:50275814-50275833 Msa0296760:intron 55.0%
GCAATGACGGTGTCTGAGGA+CGG - chr2_3:50275818-50275837 Msa0296760:intron 55.0%
CAATGACGGTGTCTGAGGAC+GGG - chr2_3:50275819-50275838 Msa0296760:intron 55.0%
!! CAGCCATGATAGTGGTGAGG+TGG - chr2_3:50275842-50275861 Msa0296760:intron 55.0%
CTCCCACCTCACCACTATCA+TGG + chr2_3:50275848-50275867 None:intergenic 55.0%
!! GGTGGCTTTGACAAGGTCAG+CGG - chr2_3:50276511-50276530 Msa0296760:intron 55.0%
ATTCCACCGTCCACTTGCGG+GGG + chr2_3:50272367-50272386 None:intergenic 60.0%
CCGCAAGTGGACGGTGGAAT+TGG - chr2_3:50272367-50272386 Msa0296760:intron 60.0%
AGGACGGGCAGCCATGATAG+TGG - chr2_3:50275834-50275853 Msa0296760:intron 60.0%
!! GGGCAGCCATGATAGTGGTG+AGG - chr2_3:50275839-50275858 Msa0296760:intron 60.0%
GGTGAGGTGGGAGAGAGCAA+CGG - chr2_3:50275855-50275874 Msa0296760:intron 60.0%
TGGGAGAGAGCAACGGAGGT+TGG - chr2_3:50275862-50275881 Msa0296760:intron 60.0%
GAGAGCAACGGAGGTTGGAG+AGG - chr2_3:50275867-50275886 Msa0296760:intron 60.0%
GAGAAGAAGGTGGCAGAGGG+AGG - chr2_3:50275899-50275918 Msa0296760:intron 60.0%
!! GCAGGATTCGGTGGTTACGG+AGG - chr2_3:50276451-50276470 Msa0296760:intron 60.0%
!! GGATTCGGTGGTTACGGAGG+TGG - chr2_3:50276454-50276473 Msa0296760:intron 60.0%
GGTGGTTACGGAGGTGGTGA+CGG - chr2_3:50276460-50276479 Msa0296760:intron 60.0%
! GGCTTTGACAAGGTCAGCGG+TGG - chr2_3:50276514-50276533 Msa0296760:intron 60.0%
TGACAAGGTCAGCGGTGGAG+TGG - chr2_3:50276519-50276538 Msa0296760:intron 60.0%
AATGGGCCCCCGCAAGTGGA+CGG - chr2_3:50272358-50272377 Msa0296760:intron 65.0%
TGAGAGGGGAGGGAGAGCAG+AGG + chr2_3:50274674-50274693 None:intergenic 65.0%
GAGGTGGGAGAGAGCAACGG+AGG - chr2_3:50275858-50275877 Msa0296760:intron 65.0%
!! GGTGGTGACGGTGCCAGAAG+AGG - chr2_3:50276472-50276491 Msa0296760:intron 65.0%
CGGGGTTCGAACCCCGACCA+TGG - chr2_3:50272645-50272664 Msa0296760:intron 70.0%
! GGGCCCCCGCAAGTGGACGG+TGG - chr2_3:50272361-50272380 Msa0296760:intron 80.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 50270841 50277102 50270841 ID=Msa0296760;Name=Msa0296760
chr2_3 mRNA 50270841 50277102 50270841 ID=Msa0296760-mRNA-1;Parent=Msa0296760;Name=Msa0296760-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.66|0.75|1|0|0|4|890|209
chr2_3 exon 50270841 50271546 50270841 ID=Msa0296760-mRNA-1:exon:15789;Parent=Msa0296760-mRNA-1
chr2_3 exon 50272023 50272301 50272023 ID=Msa0296760-mRNA-1:exon:15788;Parent=Msa0296760-mRNA-1
chr2_3 exon 50272419 50272472 50272419 ID=Msa0296760-mRNA-1:exon:15787;Parent=Msa0296760-mRNA-1
chr2_3 exon 50276622 50277102 50276622 ID=Msa0296760-mRNA-1:exon:15786;Parent=Msa0296760-mRNA-1
chr2_3 CDS 50276622 50277102 50276622 ID=Msa0296760-mRNA-1:cds;Parent=Msa0296760-mRNA-1
chr2_3 CDS 50272419 50272472 50272419 ID=Msa0296760-mRNA-1:cds;Parent=Msa0296760-mRNA-1
chr2_3 CDS 50272207 50272301 50272207 ID=Msa0296760-mRNA-1:cds;Parent=Msa0296760-mRNA-1
chr2_3 three_prime_UTR 50272023 50272206 50272023 ID=Msa0296760-mRNA-1:three_prime_utr;Parent=Msa0296760-mRNA-1
chr2_3 three_prime_UTR 50270841 50271546 50270841 ID=Msa0296760-mRNA-1:three_prime_utr;Parent=Msa0296760-mRNA-1
Gene Sequence

>Msa0296760

ATGGAGATGGATTTTGAACCTCCCTTTTTAAAGATATACAATACCCTATTGGAAAAAAATCTTGGAGATAATTCAGAAAATGATTTGTACTCTATGGTAGAGGGAAGTGAGGAACTACCTTTGATTGATCTTGAAAAGTTAAATCTTGAACATCCTAAAAGAGAAGAGTGCATGAAAGAAATAAGTGAAGCTGCTAGTAAATGGGGTTTCTTTCAGATTATTAATCATGGAATTTCAAATGAGATTCTGGACAACATGATATCTGAGCAAAAGAAGTTGTTCTATCAGCCTTTTGTGAACAAGTTATCTGCAAAAACTGTCTTTAATTTGTCTCCAAAAACATACAGATGGGGGAATCCATGTGCTACCAATCTAAGACAGCTTTCTTGGTCTGAAGCCTTTCATTTTTCTCTGACAGATATACCAAATATGGACCAACACATAACTCTGAGGTCGGTTTTCTTCACATCTATTATTGTTTGTGCTTTTGTGAGTTCTAAGATAGATGGTAGAAGATTGAATTGTGAACAACATGTGAACATACGTGCTGGGAGATGTTCTGAACGAAAGCAGCATATCACTATGGGACACAAGATGAAGTTGCGACTCACTAAGAAAAGGTGGGAATAA

Protein sequence

>Msa0296760

MEMDFEPPFLKIYNTLLEKNLGDNSENDLYSMVEGSEELPLIDLEKLNLEHPKREECMKEISEAASKWGFFQIINHGISNEILDNMISEQKKLFYQPFVNKLSAKTVFNLSPKTYRWGNPCATNLRQLSWSEAFHFSLTDIPNMDQHITLRSVFFTSIIVCAFVSSKIDGRRLNCEQHVNIRAGRCSERKQHITMGHKMKLRLTKKRWE*