Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989260 | XP_013451989.1 | 95.627 | 343 | 15 | 0 | 1 | 343 | 1 | 343 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989260 | sp|Q8L518|CK2_ARATH | 63.914 | 327 | 117 | 1 | 17 | 343 | 20 | 345 | 6.23e-161 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989260 | B7FI98 | 95.627 | 343 | 15 | 0 | 1 | 343 | 1 | 343 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0885830 | Msa0989260 | 0.807856 | 4.120639e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989260 | MtrunA17_Chr6g0466631 | 95.627 | 343 | 15 | 0 | 1 | 343 | 1 | 343 | 0.0 | 694 |
| Msa0989260 | MtrunA17_Chr1g0201341 | 77.193 | 342 | 78 | 0 | 1 | 342 | 1 | 342 | 0.0 | 575 |
| Msa0989260 | MtrunA17_Chr3g0081621 | 66.463 | 328 | 109 | 1 | 16 | 343 | 127 | 453 | 9.61e-170 | 481 |
| Msa0989260 | MtrunA17_Chr8g0354091 | 60.366 | 328 | 122 | 2 | 16 | 343 | 36 | 355 | 1.54e-150 | 428 |
| Msa0989260 | MtrunA17_Chr2g0307011 | 34.365 | 323 | 189 | 6 | 29 | 343 | 59 | 366 | 2.92e-56 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989260 | AT1G74320.1 | 63.914 | 327 | 117 | 1 | 17 | 343 | 20 | 345 | 6.33e-162 | 456 |
| Msa0989260 | AT4G09760.1 | 59.012 | 344 | 138 | 3 | 1 | 343 | 1 | 342 | 1.70e-158 | 447 |
| Msa0989260 | AT4G09760.2 | 59.012 | 344 | 138 | 3 | 1 | 343 | 1 | 342 | 1.70e-158 | 447 |
| Msa0989260 | AT1G71697.1 | 59.012 | 344 | 139 | 2 | 1 | 342 | 1 | 344 | 2.73e-156 | 442 |
| Msa0989260 | AT4G09760.3 | 55.111 | 225 | 98 | 3 | 1 | 224 | 1 | 223 | 5.87e-88 | 265 |
| Msa0989260 | AT4G09760.4 | 53.810 | 210 | 94 | 3 | 1 | 209 | 1 | 208 | 3.10e-79 | 241 |
| Msa0989260 | AT2G26830.1 | 36.164 | 318 | 183 | 6 | 30 | 339 | 55 | 360 | 1.08e-59 | 196 |
Find 75 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGCAAACCATCTATTT+TGG | 0.099275 | 6_4:+45577758 | Msa0989260:CDS |
| ATTCGTCATTGCACCCTTTA+AGG | 0.111346 | 6_4:-45574459 | None:intergenic |
| ATCCCCTTTCATTTGGATTT+TGG | 0.113400 | 6_4:+45578482 | Msa0989260:three_prime_UTR |
| GTTAAAGAAGCCTACTTTAT+TGG | 0.134694 | 6_4:+45578306 | Msa0989260:CDS |
| CAAAAGGATATAAAGAATTT+TGG | 0.157757 | 6_4:+45576559 | Msa0989260:CDS |
| CTCTCTCCCCTCGACTTCTT+TGG | 0.245422 | 6_4:+45573627 | Msa0989260:five_prime_UTR |
| ATAAAGTAGGCTTCTTTAAC+TGG | 0.261588 | 6_4:-45578303 | None:intergenic |
| TGTGGAGGTGAATCCCTTAA+AGG | 0.282574 | 6_4:+45574445 | Msa0989260:CDS |
| GCAGCTGTGGCTGTAGATTT+AGG | 0.289983 | 6_4:+45574398 | Msa0989260:CDS |
| GCTATCAACGAAGATATTTC+AGG | 0.295078 | 6_4:-45576348 | None:intergenic |
| CGGTCATGTTAGAAGGGTTT+TGG | 0.309388 | 6_4:+45574517 | Msa0989260:CDS |
| TGTCACAATGATCTACAATA+TGG | 0.312751 | 6_4:+45576655 | Msa0989260:CDS |
| CTTTGGAATCCCCTTTCATT+TGG | 0.319659 | 6_4:+45578475 | Msa0989260:three_prime_UTR |
| GGACAGGGTCCGCGACTTCT+TGG | 0.327554 | 6_4:+45574620 | Msa0989260:CDS |
| TCAGAAGAAAATCAAGAGAT+TGG | 0.359374 | 6_4:+45576628 | Msa0989260:CDS |
| CTTCTTGGTCGGTTCACTAC+TGG | 0.369934 | 6_4:+45574635 | Msa0989260:CDS |
| TGCGAATCATTTCTGTGAAA+TGG | 0.373754 | 6_4:+45576938 | Msa0989260:CDS |
| TTCGTCATTGCACCCTTTAA+GGG | 0.375191 | 6_4:-45574458 | None:intergenic |
| TCGACATACACTCAAAGGTT+TGG | 0.380155 | 6_4:-45574592 | None:intergenic |
| TTCGCAAGGTCAAATGCAAC+TGG | 0.390033 | 6_4:-45576921 | None:intergenic |
| AAAGGGTGCAATGACGAATC+AGG | 0.392742 | 6_4:+45574463 | Msa0989260:CDS |
| AAAGTGACGGTCATGTTAGA+AGG | 0.420023 | 6_4:+45574510 | Msa0989260:CDS |
| CCCACAAGCCCCAAAATAGA+TGG | 0.429365 | 6_4:-45577768 | None:intergenic |
| GTGCAAAGAAGGCTCAGATT+TGG | 0.434338 | 6_4:+45576409 | Msa0989260:CDS |
| TGAATATTTGAGTCTTAAAG+AGG | 0.434548 | 6_4:-45573822 | None:intergenic |
| ATCCCAAAATCCAAATGAAA+GGG | 0.450829 | 6_4:-45578485 | None:intergenic |
| GTGGAGGTGAATCCCTTAAA+GGG | 0.453217 | 6_4:+45574446 | Msa0989260:CDS |
| AAGACATTTGAATTATTGAA+AGG | 0.469355 | 6_4:+45574341 | Msa0989260:CDS |
| AGACATTTGAATTATTGAAA+GGG | 0.472249 | 6_4:+45574342 | Msa0989260:CDS |
| TCATATGCCTGGTGCAAAGA+AGG | 0.476216 | 6_4:+45576398 | Msa0989260:CDS |
| ATCTGAGCCTTCTTTGCACC+AGG | 0.486876 | 6_4:-45576405 | None:intergenic |
| TAAAAGTTTATGCTCGCAAA+AGG | 0.492692 | 6_4:+45576543 | Msa0989260:CDS |
| TTTCACAATCTTCATATGCC+TGG | 0.492944 | 6_4:+45576387 | Msa0989260:CDS |
| TGAAGAGTTCATTCATGCTC+GGG | 0.495805 | 6_4:+45574664 | Msa0989260:CDS |
| GAACAGACCAAAGAAGTCGA+GGG | 0.495909 | 6_4:-45573634 | None:intergenic |
| TATACATACTTGAGTTCTGA+AGG | 0.510778 | 6_4:+45577148 | Msa0989260:CDS |
| AGCAATTATGCCAATAAAGT+AGG | 0.516378 | 6_4:-45578316 | None:intergenic |
| CTCAGATTTGGCAGAGAATG+AGG | 0.517306 | 6_4:+45576421 | Msa0989260:CDS |
| AATCCCAAAATCCAAATGAA+AGG | 0.521684 | 6_4:-45578486 | None:intergenic |
| TATTTCAGGGTCGCGGAGGT+CGG | 0.525048 | 6_4:-45576334 | None:intergenic |
| TAATGGTCTGCCAGATCTTG+AGG | 0.526466 | 6_4:+45577108 | Msa0989260:intron |
| TTTGAGTGTATGTCGAAGAA+TGG | 0.526924 | 6_4:+45574599 | Msa0989260:CDS |
| AAAGCCAAGTGATGCTGAAG+TGG | 0.528186 | 6_4:+45577705 | Msa0989260:CDS |
| TTGAAGAGTTCATTCATGCT+CGG | 0.528831 | 6_4:+45574663 | Msa0989260:CDS |
| TACAATTGACTTTGACTACA+AGG | 0.531304 | 6_4:+45578252 | Msa0989260:CDS |
| ATTCTTCGACATACACTCAA+AGG | 0.542251 | 6_4:-45574597 | None:intergenic |
| CAGATCTTGAGGAGCGTCGA+AGG | 0.549225 | 6_4:+45577119 | Msa0989260:intron |
| TGATCCACTTCAGCATCACT+TGG | 0.550037 | 6_4:-45577709 | None:intergenic |
| GTGTATGTCGAAGAATGGAC+AGG | 0.552928 | 6_4:+45574604 | Msa0989260:CDS |
| ACAATATGGTAACATCATGA+TGG | 0.554878 | 6_4:+45576669 | Msa0989260:CDS |
| ATTATATGGCGAAGGAGTTG+AGG | 0.566600 | 6_4:+45574544 | Msa0989260:CDS |
| CTATCAACGAAGATATTTCA+GGG | 0.568554 | 6_4:-45576347 | None:intergenic |
| AGAACAGACCAAAGAAGTCG+AGG | 0.572385 | 6_4:-45573635 | None:intergenic |
| ACAAGGAGTTCTCAAGGCAG+AGG | 0.574763 | 6_4:+45578269 | Msa0989260:CDS |
| TTGGTTCGATTATATGGCGA+AGG | 0.583342 | 6_4:+45574536 | Msa0989260:CDS |
| GGATCAGTTAACGAATCTTG+TGG | 0.589221 | 6_4:+45577726 | Msa0989260:CDS |
| AAGTGACGGTCATGTTAGAA+GGG | 0.593909 | 6_4:+45574511 | Msa0989260:CDS |
| TTGACTACAAGGAGTTCTCA+AGG | 0.595449 | 6_4:+45578263 | Msa0989260:CDS |
| GTCAAGAACATGAGGCGTGT+CGG | 0.599809 | 6_4:-45576976 | None:intergenic |
| ACGAAGATATTTCAGGGTCG+CGG | 0.603740 | 6_4:-45576341 | None:intergenic |
| CTTGACTACAGTAAATATCC+CGG | 0.613111 | 6_4:+45576993 | Msa0989260:CDS |
| TTTCACAGAAATGATTCGCA+AGG | 0.613220 | 6_4:-45576935 | None:intergenic |
| AATGAAAGTTCTTGCAGCTG+TGG | 0.613557 | 6_4:+45574385 | Msa0989260:CDS |
| AAGATATTTCAGGGTCGCGG+AGG | 0.619917 | 6_4:-45576338 | None:intergenic |
| AACAGACCAAAGAAGTCGAG+GGG | 0.620105 | 6_4:-45573633 | None:intergenic |
| GAACATGAGGCGTGTCGGTG+TGG | 0.622313 | 6_4:-45576971 | None:intergenic |
| TCCCAAAATCCAAATGAAAG+GGG | 0.623632 | 6_4:-45578484 | None:intergenic |
| GAATCATTTCTGTGAAATGG+CGG | 0.647449 | 6_4:+45576941 | Msa0989260:CDS |
| TCGCAAGGTCAAATGCAACT+GGG | 0.649429 | 6_4:-45576920 | None:intergenic |
| TTACTGTAGTCAAGAACATG+AGG | 0.665640 | 6_4:-45576984 | None:intergenic |
| GTGAACCGACCAAGAAGTCG+CGG | 0.686133 | 6_4:-45574629 | None:intergenic |
| TGTATGTCGAAGAATGGACA+GGG | 0.690528 | 6_4:+45574605 | Msa0989260:CDS |
| AATTGGCCGACGAAAAGTGA+CGG | 0.697156 | 6_4:+45574497 | Msa0989260:CDS |
| AATTGATGATGTAACTACTG+TGG | 0.697759 | 6_4:+45574427 | Msa0989260:CDS |
| TGATGATGTAACTACTGTGG+AGG | 0.723779 | 6_4:+45574430 | Msa0989260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAATTAAAATTTTTAAT+TGG | - | chr6_4:45573902-45573921 | None:intergenic | 0.0% |
| !!! | ATTTTTTTTTAATCAAAAAG+TGG | - | chr6_4:45574165-45574184 | None:intergenic | 10.0% |
| !!! | TTGTTTTATATACAAATAAA+AGG | + | chr6_4:45575525-45575544 | Msa0989260:intron | 10.0% |
| !! | ACTAAAAATATTTATATCTT+TGG | + | chr6_4:45578458-45578477 | Msa0989260:three_prime_UTR | 10.0% |
| !! | TTAATTCTAATAATAAAGTG+TGG | + | chr6_4:45575016-45575035 | Msa0989260:intron | 15.0% |
| !! | TAAAATTCAATAAAGCAAAA+GGG | - | chr6_4:45575245-45575264 | None:intergenic | 15.0% |
| !! | CTATGAAATAAAATAAAGAA+TGG | - | chr6_4:45575451-45575470 | None:intergenic | 15.0% |
| !!! | TCTTTATTTTATTTCATAGA+TGG | + | chr6_4:45575452-45575471 | Msa0989260:intron | 15.0% |
| !! | ATATATCAACATTATTAAAC+AGG | - | chr6_4:45575871-45575890 | None:intergenic | 15.0% |
| !! | AATAAACTATAACAATTGTA+GGG | - | chr6_4:45576064-45576083 | None:intergenic | 15.0% |
| !! | AAATAAACTATAACAATTGT+AGG | - | chr6_4:45576065-45576084 | None:intergenic | 15.0% |
| !! | AAGTAAGCTTAAAAATATAA+TGG | - | chr6_4:45576850-45576869 | None:intergenic | 15.0% |
| !! | CTAACAATAAAATTTATTGT+CGG | - | chr6_4:45577201-45577220 | None:intergenic | 15.0% |
| !!! | TAAAATTATAAGTTGATATG+TGG | - | chr6_4:45578091-45578110 | None:intergenic | 15.0% |
| !! | AGATTAAGTGAATGATAAAA+TGG | - | chr6_4:45574062-45574081 | None:intergenic | 20.0% |
| !! | AAGACATTTGAATTATTGAA+AGG | + | chr6_4:45574341-45574360 | Msa0989260:CDS | 20.0% |
| !! | AGACATTTGAATTATTGAAA+GGG | + | chr6_4:45574342-45574361 | Msa0989260:CDS | 20.0% |
| !!! | TGTTTTCTTTAATAAGTCAA+AGG | + | chr6_4:45574708-45574727 | Msa0989260:intron | 20.0% |
| !! | TTAATTCCATTAGTAATGTT+TGG | + | chr6_4:45574935-45574954 | Msa0989260:intron | 20.0% |
| !! | CTAAAATTCAATAAAGCAAA+AGG | - | chr6_4:45575246-45575265 | None:intergenic | 20.0% |
| !! | TAAAATACAATAAAGCAAAG+TGG | - | chr6_4:45575319-45575338 | None:intergenic | 20.0% |
| !! | AGAAAGAGACAAAAAAAAAA+AGG | + | chr6_4:45576038-45576057 | Msa0989260:intron | 20.0% |
| !!! | ACATTTTTCTTCTTGATTTT+TGG | + | chr6_4:45576290-45576309 | Msa0989260:intron | 20.0% |
| !!! | CAAAAGGATATAAAGAATTT+TGG | + | chr6_4:45576559-45576578 | Msa0989260:CDS | 20.0% |
| !! | ACTGAAAATAAATGTAATTG+AGG | - | chr6_4:45577046-45577065 | None:intergenic | 20.0% |
| !! | TGAAACAACTATTAGAAAAA+TGG | - | chr6_4:45577286-45577305 | None:intergenic | 20.0% |
| !! | AAGTGAACTAAAAGTTAATA+AGG | + | chr6_4:45577367-45577386 | Msa0989260:intron | 20.0% |
| !! | ATATAACTAAAAATGTGTGA+TGG | + | chr6_4:45578414-45578433 | Msa0989260:three_prime_UTR | 20.0% |
| ! | TGAATATTTGAGTCTTAAAG+AGG | - | chr6_4:45573825-45573844 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTTCTGCTTCAA+AGG | + | chr6_4:45573844-45573863 | Msa0989260:five_prime_UTR | 25.0% |
| !!! | ATGGTTTGAATTTGTTACAA+TGG | - | chr6_4:45574043-45574062 | None:intergenic | 25.0% |
| ! | TTGTTCTTAATTATGTTGCA+TGG | + | chr6_4:45574253-45574272 | Msa0989260:intron | 25.0% |
| !! | AGCATAAACTTTTCTTATAC+CGG | - | chr6_4:45574809-45574828 | None:intergenic | 25.0% |
| !! | TCTTGTGTTTTTCTATTCAT+TGG | + | chr6_4:45574864-45574883 | Msa0989260:intron | 25.0% |
| !! | CAGATGATTGTTAGTTTATT+TGG | + | chr6_4:45574894-45574913 | Msa0989260:intron | 25.0% |
| !! | GTATTTTCTATTAAACAGAG+AGG | - | chr6_4:45575674-45575693 | None:intergenic | 25.0% |
| ! | ACACATACATAATTGAGAAA+AGG | + | chr6_4:45575731-45575750 | Msa0989260:intron | 25.0% |
| ! | ACTGTCATGATTTGATATAA+AGG | - | chr6_4:45576092-45576111 | None:intergenic | 25.0% |
| !! | TGTTCCTTTTCATTTACTTA+TGG | + | chr6_4:45576142-45576161 | Msa0989260:intron | 25.0% |
| ! | TTAGCCATAAGTAAATGAAA+AGG | - | chr6_4:45576149-45576168 | None:intergenic | 25.0% |
| !! | TATGCTTTGCATATTTTACT+AGG | + | chr6_4:45576503-45576522 | Msa0989260:intron | 25.0% |
| !! | TTGCATATTTTACTAGGAAA+TGG | + | chr6_4:45576509-45576528 | Msa0989260:intron | 25.0% |
| ! | TACAAGATTAATTTCGACTA+CGG | - | chr6_4:45576794-45576813 | None:intergenic | 25.0% |
| ! | AGTGATGGTATAAACTATAA+CGG | - | chr6_4:45576821-45576840 | None:intergenic | 25.0% |
| !!! | TTGAGACATAAACTTGTTAA+TGG | + | chr6_4:45577091-45577110 | Msa0989260:intron | 25.0% |
| ! | TAGAGAAAAAAATCCAAATC+AGG | - | chr6_4:45577228-45577247 | None:intergenic | 25.0% |
| !!! | ATAGTTTGCTTGATTTTATG+TGG | + | chr6_4:45577247-45577266 | Msa0989260:intron | 25.0% |
| ! | TTCATATGTCTCTTCAATTT+CGG | + | chr6_4:45577393-45577412 | Msa0989260:intron | 25.0% |
| ! | TTAATTGTAAACTTGTACAC+AGG | + | chr6_4:45577679-45577698 | Msa0989260:intron | 25.0% |
| !!! | GCTTTTTCTTTTCACTTTTA+TGG | + | chr6_4:45577806-45577825 | Msa0989260:intron | 25.0% |
| ! | TGTGTAGTATTAGAATGAAT+GGG | - | chr6_4:45577969-45577988 | None:intergenic | 25.0% |
| ! | TTGTGTAGTATTAGAATGAA+TGG | - | chr6_4:45577970-45577989 | None:intergenic | 25.0% |
| !!! | CCTTGAATTATTTTGAGATT+CGG | + | chr6_4:45578062-45578081 | Msa0989260:intron | 25.0% |
| !! | TATGATGTCATTCTGAAACT+TGG | + | chr6_4:45573725-45573744 | Msa0989260:intron | 30.0% |
| ACACAGAAAATTGTTGCAAA+TGG | - | chr6_4:45573982-45574001 | None:intergenic | 30.0% | |
| !! | AATTGATGATGTAACTACTG+TGG | + | chr6_4:45574427-45574446 | Msa0989260:CDS | 30.0% |
| !!! | GTGAGACATCATTTTAATTC+CGG | + | chr6_4:45574774-45574793 | Msa0989260:intron | 30.0% |
| AAAGTTTATGCTTCGATAGA+AGG | + | chr6_4:45574817-45574836 | Msa0989260:intron | 30.0% | |
| TCCATTAGTAATGTTTGGTT+CGG | + | chr6_4:45574940-45574959 | Msa0989260:intron | 30.0% | |
| GATGATTAGAATGGTTTCTA+TGG | + | chr6_4:45575173-45575192 | Msa0989260:intron | 30.0% | |
| ATTAGAATGGTTTCTATGGT+TGG | + | chr6_4:45575177-45575196 | Msa0989260:intron | 30.0% | |
| TTAGAATGGTTTCTATGGTT+GGG | + | chr6_4:45575178-45575197 | Msa0989260:intron | 30.0% | |
| ! | TAGTCCAAAAAGCTTTTCTT+TGG | + | chr6_4:45575263-45575282 | Msa0989260:intron | 30.0% |
| ! | AGAACCAAAGAAAAGCTTTT+TGG | - | chr6_4:45575270-45575289 | None:intergenic | 30.0% |
| !! | GAAAAATGCTTAGCTTTGAA+AGG | + | chr6_4:45575407-45575426 | Msa0989260:intron | 30.0% |
| CAATAGTGTTTGGTATTGTT+TGG | - | chr6_4:45575601-45575620 | None:intergenic | 30.0% | |
| AGTTTCTGTCTATCAATATG+AGG | - | chr6_4:45575636-45575655 | None:intergenic | 30.0% | |
| ! | TTGTTTGGGCATAAGTTTTT+GGG | - | chr6_4:45575840-45575859 | None:intergenic | 30.0% |
| GATCTATTGTCATGTTATCA+TGG | - | chr6_4:45575990-45576009 | None:intergenic | 30.0% | |
| AATGAAAAGGAACATGAACT+TGG | - | chr6_4:45576136-45576155 | None:intergenic | 30.0% | |
| CTATCAACGAAGATATTTCA+GGG | - | chr6_4:45576350-45576369 | None:intergenic | 30.0% | |
| TAAAAGTTTATGCTCGCAAA+AGG | + | chr6_4:45576543-45576562 | Msa0989260:CDS | 30.0% | |
| !!! | GGATATAAAGAATTTTGGCT+TGG | + | chr6_4:45576564-45576583 | Msa0989260:CDS | 30.0% |
| TCAGAAGAAAATCAAGAGAT+TGG | + | chr6_4:45576628-45576647 | Msa0989260:CDS | 30.0% | |
| TGTCACAATGATCTACAATA+TGG | + | chr6_4:45576655-45576674 | Msa0989260:CDS | 30.0% | |
| ACAATATGGTAACATCATGA+TGG | + | chr6_4:45576669-45576688 | Msa0989260:CDS | 30.0% | |
| GTAGTCGAAATTAATCTTGT+AGG | + | chr6_4:45576793-45576812 | Msa0989260:intron | 30.0% | |
| ATATAATGGTACGTTAGTGA+TGG | - | chr6_4:45576836-45576855 | None:intergenic | 30.0% | |
| TCATGTGTTATCAATGATAC+AGG | + | chr6_4:45576875-45576894 | Msa0989260:intron | 30.0% | |
| TGTATGAGCAATTCATTTAC+CGG | - | chr6_4:45577015-45577034 | None:intergenic | 30.0% | |
| ! | TATACATACTTGAGTTCTGA+AGG | + | chr6_4:45577148-45577167 | Msa0989260:CDS | 30.0% |
| TATTGTTAGAGATCCTGATT+TGG | + | chr6_4:45577212-45577231 | Msa0989260:intron | 30.0% | |
| CTTATGTGCTTGAAATTTGA+GGG | - | chr6_4:45577350-45577369 | None:intergenic | 30.0% | |
| ACTTATGTGCTTGAAATTTG+AGG | - | chr6_4:45577351-45577370 | None:intergenic | 30.0% | |
| AAATGGAGTTCAAATATCCT+CGG | + | chr6_4:45577545-45577564 | Msa0989260:intron | 30.0% | |
| ! | TCTTGCAAACCATCTATTTT+GGG | + | chr6_4:45577759-45577778 | Msa0989260:CDS | 30.0% |
| TTCAAAATAGATACACAGCA+GGG | - | chr6_4:45577939-45577958 | None:intergenic | 30.0% | |
| ACGAAGTTGACAAAAAGAAA+TGG | - | chr6_4:45578008-45578027 | None:intergenic | 30.0% | |
| CCGAATCTCAAAATAATTCA+AGG | - | chr6_4:45578065-45578084 | None:intergenic | 30.0% | |
| ! | TACAATTGACTTTGACTACA+AGG | + | chr6_4:45578252-45578271 | Msa0989260:CDS | 30.0% |
| ATAAAGTAGGCTTCTTTAAC+TGG | - | chr6_4:45578306-45578325 | None:intergenic | 30.0% | |
| GTTAAAGAAGCCTACTTTAT+TGG | + | chr6_4:45578306-45578325 | Msa0989260:CDS | 30.0% | |
| AGCAATTATGCCAATAAAGT+AGG | - | chr6_4:45578319-45578338 | None:intergenic | 30.0% | |
| ATCCCAAAATCCAAATGAAA+GGG | - | chr6_4:45578488-45578507 | None:intergenic | 30.0% | |
| AATCCCAAAATCCAAATGAA+AGG | - | chr6_4:45578489-45578508 | None:intergenic | 30.0% | |
| TCATGTATTCTTCATTGCAG+TGG | + | chr6_4:45573779-45573798 | Msa0989260:intron | 35.0% | |
| ! | AATGACGAATCAGGTTTTTG+AGG | + | chr6_4:45574472-45574491 | Msa0989260:CDS | 35.0% |
| !!! | ATCAGGTTTTTGAGGTGAAT+TGG | + | chr6_4:45574480-45574499 | Msa0989260:CDS | 35.0% |
| !!! | AGGGTTTTGGTTCGATTATA+TGG | + | chr6_4:45574530-45574549 | Msa0989260:CDS | 35.0% |
| ! | AGTTGAGGTTTTCTTCGATA+GGG | + | chr6_4:45574559-45574578 | Msa0989260:CDS | 35.0% |
| ATTCTTCGACATACACTCAA+AGG | - | chr6_4:45574600-45574619 | None:intergenic | 35.0% | |
| TTTGAGTGTATGTCGAAGAA+TGG | + | chr6_4:45574599-45574618 | Msa0989260:CDS | 35.0% | |
| TTGAAGAGTTCATTCATGCT+CGG | + | chr6_4:45574663-45574682 | Msa0989260:CDS | 35.0% | |
| TTAATTCCGGTACAAGATTC+CGG | + | chr6_4:45574787-45574806 | Msa0989260:intron | 35.0% | |
| ACCGAACCAAACATTACTAA+TGG | - | chr6_4:45574944-45574963 | None:intergenic | 35.0% | |
| AGTTGCAGTGATGATTAGAA+TGG | + | chr6_4:45575164-45575183 | Msa0989260:intron | 35.0% | |
| ! | TACCAAACACTATTGAGTTG+TGG | + | chr6_4:45575606-45575625 | Msa0989260:intron | 35.0% |
| TTCCACAACTCAATAGTGTT+TGG | - | chr6_4:45575611-45575630 | None:intergenic | 35.0% | |
| ! | CTTGTTTGGGCATAAGTTTT+TGG | - | chr6_4:45575841-45575860 | None:intergenic | 35.0% |
| ! | AACAGGAGAAAGACTTGTTT+GGG | - | chr6_4:45575854-45575873 | None:intergenic | 35.0% |
| ! | AAACAGGAGAAAGACTTGTT+TGG | - | chr6_4:45575855-45575874 | None:intergenic | 35.0% |
| GCTATCAACGAAGATATTTC+AGG | - | chr6_4:45576351-45576370 | None:intergenic | 35.0% | |
| TTTCACAATCTTCATATGCC+TGG | + | chr6_4:45576387-45576406 | Msa0989260:CDS | 35.0% | |
| TTTCACAGAAATGATTCGCA+AGG | - | chr6_4:45576938-45576957 | None:intergenic | 35.0% | |
| TGCGAATCATTTCTGTGAAA+TGG | + | chr6_4:45576938-45576957 | Msa0989260:CDS | 35.0% | |
| GAATCATTTCTGTGAAATGG+CGG | + | chr6_4:45576941-45576960 | Msa0989260:CDS | 35.0% | |
| TTACTGTAGTCAAGAACATG+AGG | - | chr6_4:45576987-45577006 | None:intergenic | 35.0% | |
| CTTGACTACAGTAAATATCC+CGG | + | chr6_4:45576993-45577012 | Msa0989260:CDS | 35.0% | |
| GTATGAGCAATTCATTTACC+GGG | - | chr6_4:45577014-45577033 | None:intergenic | 35.0% | |
| GACCTTGTAACTTCAACAAA+TGG | + | chr6_4:45577528-45577547 | Msa0989260:intron | 35.0% | |
| ! | CTCCATTTGTTGAAGTTACA+AGG | - | chr6_4:45577533-45577552 | None:intergenic | 35.0% |
| AGTTCAAATATCCTCGGAAA+CGG | + | chr6_4:45577551-45577570 | Msa0989260:intron | 35.0% | |
| ! | TAAAGAGTGCACAAACATCT+TGG | - | chr6_4:45577615-45577634 | None:intergenic | 35.0% |
| ! | CTCTTGCAAACCATCTATTT+TGG | + | chr6_4:45577758-45577777 | Msa0989260:CDS | 35.0% |
| ! | CTTGCAAACCATCTATTTTG+GGG | + | chr6_4:45577760-45577779 | Msa0989260:CDS | 35.0% |
| GTTCAAAATAGATACACAGC+AGG | - | chr6_4:45577940-45577959 | None:intergenic | 35.0% | |
| CTCAAAATAATTCAAGGCTC+AGG | - | chr6_4:45578059-45578078 | None:intergenic | 35.0% | |
| ! | ATCCCCTTTCATTTGGATTT+TGG | + | chr6_4:45578482-45578501 | Msa0989260:three_prime_UTR | 35.0% |
| ! | TCCCCTTTCATTTGGATTTT+GGG | + | chr6_4:45578483-45578502 | Msa0989260:three_prime_UTR | 35.0% |
| TCCCAAAATCCAAATGAAAG+GGG | - | chr6_4:45578487-45578506 | None:intergenic | 35.0% | |
| !!! | TGGATTTTGGGATTGAGTTA+AGG | + | chr6_4:45578495-45578514 | Msa0989260:three_prime_UTR | 35.0% |
| AAGTCATCACTTTCTGCATG+TGG | - | chr6_4:45574319-45574338 | None:intergenic | 40.0% | |
| AATGAAAGTTCTTGCAGCTG+TGG | + | chr6_4:45574385-45574404 | Msa0989260:CDS | 40.0% | |
| ! | TGATGATGTAACTACTGTGG+AGG | + | chr6_4:45574430-45574449 | Msa0989260:CDS | 40.0% |
| TTCGTCATTGCACCCTTTAA+GGG | - | chr6_4:45574461-45574480 | None:intergenic | 40.0% | |
| ATTCGTCATTGCACCCTTTA+AGG | - | chr6_4:45574462-45574481 | None:intergenic | 40.0% | |
| AAAGTGACGGTCATGTTAGA+AGG | + | chr6_4:45574510-45574529 | Msa0989260:CDS | 40.0% | |
| AAGTGACGGTCATGTTAGAA+GGG | + | chr6_4:45574511-45574530 | Msa0989260:CDS | 40.0% | |
| ! | TTGGTTCGATTATATGGCGA+AGG | + | chr6_4:45574536-45574555 | Msa0989260:CDS | 40.0% |
| ATTATATGGCGAAGGAGTTG+AGG | + | chr6_4:45574544-45574563 | Msa0989260:CDS | 40.0% | |
| ! | GAGTTGAGGTTTTCTTCGAT+AGG | + | chr6_4:45574558-45574577 | Msa0989260:CDS | 40.0% |
| TCGACATACACTCAAAGGTT+TGG | - | chr6_4:45574595-45574614 | None:intergenic | 40.0% | |
| TGTATGTCGAAGAATGGACA+GGG | + | chr6_4:45574605-45574624 | Msa0989260:CDS | 40.0% | |
| TGAAGAGTTCATTCATGCTC+GGG | + | chr6_4:45574664-45574683 | Msa0989260:CDS | 40.0% | |
| CTTATACCGGAATCTTGTAC+CGG | - | chr6_4:45574796-45574815 | None:intergenic | 40.0% | |
| !! | AGTTTTTGGGCACATGACTT+AGG | - | chr6_4:45575827-45575846 | None:intergenic | 40.0% |
| GCGTGAATTTGTCAGTGAAA+TGG | - | chr6_4:45577179-45577198 | None:intergenic | 40.0% | |
| CTTGAAATTTGAGGGTGACA+GGG | - | chr6_4:45577342-45577361 | None:intergenic | 40.0% | |
| AGCTTCACATCAGATAAGGA+AGG | - | chr6_4:45577452-45577471 | None:intergenic | 40.0% | |
| ! | AGCTAGCTTCACATCAGATA+AGG | - | chr6_4:45577456-45577475 | None:intergenic | 40.0% |
| GGATCAGTTAACGAATCTTG+TGG | + | chr6_4:45577726-45577745 | Msa0989260:CDS | 40.0% | |
| GTCAGCTAAATGCATGTGTT+CGG | + | chr6_4:45577849-45577868 | Msa0989260:intron | 40.0% | |
| CATAACTCTGCAACACACAA+AGG | - | chr6_4:45578228-45578247 | None:intergenic | 40.0% | |
| TTGACTACAAGGAGTTCTCA+AGG | + | chr6_4:45578263-45578282 | Msa0989260:CDS | 40.0% | |
| !! | CTTTGGAATCCCCTTTCATT+TGG | + | chr6_4:45578475-45578494 | Msa0989260:three_prime_UTR | 40.0% |
| AACAGACCAAAGAAGTCGAG+GGG | - | chr6_4:45573636-45573655 | None:intergenic | 45.0% | |
| GAACAGACCAAAGAAGTCGA+GGG | - | chr6_4:45573637-45573656 | None:intergenic | 45.0% | |
| AGAACAGACCAAAGAAGTCG+AGG | - | chr6_4:45573638-45573657 | None:intergenic | 45.0% | |
| TGTGGAGGTGAATCCCTTAA+AGG | + | chr6_4:45574445-45574464 | Msa0989260:CDS | 45.0% | |
| GTGGAGGTGAATCCCTTAAA+GGG | + | chr6_4:45574446-45574465 | Msa0989260:CDS | 45.0% | |
| ! | AAAGGGTGCAATGACGAATC+AGG | + | chr6_4:45574463-45574482 | Msa0989260:CDS | 45.0% |
| AATTGGCCGACGAAAAGTGA+CGG | + | chr6_4:45574497-45574516 | Msa0989260:CDS | 45.0% | |
| !!! | ACATGACCGTCACTTTTCGT+CGG | - | chr6_4:45574506-45574525 | None:intergenic | 45.0% |
| ! | CGGTCATGTTAGAAGGGTTT+TGG | + | chr6_4:45574517-45574536 | Msa0989260:CDS | 45.0% |
| GTGTATGTCGAAGAATGGAC+AGG | + | chr6_4:45574604-45574623 | Msa0989260:CDS | 45.0% | |
| !!! | TGGTTCGGTTTTTCGATGTG+TGG | + | chr6_4:45574955-45574974 | Msa0989260:intron | 45.0% |
| ACGAAGATATTTCAGGGTCG+CGG | - | chr6_4:45576344-45576363 | None:intergenic | 45.0% | |
| TCATATGCCTGGTGCAAAGA+AGG | + | chr6_4:45576398-45576417 | Msa0989260:CDS | 45.0% | |
| GTGCAAAGAAGGCTCAGATT+TGG | + | chr6_4:45576409-45576428 | Msa0989260:CDS | 45.0% | |
| CTCAGATTTGGCAGAGAATG+AGG | + | chr6_4:45576421-45576440 | Msa0989260:CDS | 45.0% | |
| ! | TTGGCAGAGAATGAGGTACT+AGG | + | chr6_4:45576428-45576447 | Msa0989260:intron | 45.0% |
| TCGCAAGGTCAAATGCAACT+GGG | - | chr6_4:45576923-45576942 | None:intergenic | 45.0% | |
| TTCGCAAGGTCAAATGCAAC+TGG | - | chr6_4:45576924-45576943 | None:intergenic | 45.0% | |
| TAATGGTCTGCCAGATCTTG+AGG | + | chr6_4:45577108-45577127 | Msa0989260:intron | 45.0% | |
| GCTTGAAATTTGAGGGTGAC+AGG | - | chr6_4:45577343-45577362 | None:intergenic | 45.0% | |
| TCCTCGGAAACGGTTGAAAA+TGG | + | chr6_4:45577561-45577580 | Msa0989260:intron | 45.0% | |
| AAAGCCAAGTGATGCTGAAG+TGG | + | chr6_4:45577705-45577724 | Msa0989260:CDS | 45.0% | |
| TGATCCACTTCAGCATCACT+TGG | - | chr6_4:45577712-45577731 | None:intergenic | 45.0% | |
| !!! | ACCATCTATTTTGGGGCTTG+TGG | + | chr6_4:45577767-45577786 | Msa0989260:CDS | 45.0% |
| !!! | CCATCTATTTTGGGGCTTGT+GGG | + | chr6_4:45577768-45577787 | Msa0989260:CDS | 45.0% |
| !!! | CATCTATTTTGGGGCTTGTG+GGG | + | chr6_4:45577769-45577788 | Msa0989260:CDS | 45.0% |
| !!! | ATTATAATGTTTTTTTTAAT+AGG | + | chr6_4:45574207-45574226 | Msa0989260:intron | 5.0% |
| !!! | TTATAATGTTTTTTTTAATA+GGG | + | chr6_4:45574208-45574227 | Msa0989260:intron | 5.0% |
| !!! | AAATAATAGAAAATATTTTT+TGG | + | chr6_4:45575107-45575126 | Msa0989260:intron | 5.0% |
| GCAGCTGTGGCTGTAGATTT+AGG | + | chr6_4:45574398-45574417 | Msa0989260:CDS | 50.0% | |
| ! | CTTCTTGGTCGGTTCACTAC+TGG | + | chr6_4:45574635-45574654 | Msa0989260:CDS | 50.0% |
| AAGATATTTCAGGGTCGCGG+AGG | - | chr6_4:45576341-45576360 | None:intergenic | 50.0% | |
| ATCTGAGCCTTCTTTGCACC+AGG | - | chr6_4:45576408-45576427 | None:intergenic | 50.0% | |
| GTCAAGAACATGAGGCGTGT+CGG | - | chr6_4:45576979-45576998 | None:intergenic | 50.0% | |
| !! | GCCATTTTCAACCGTTTCCG+AGG | - | chr6_4:45577565-45577584 | None:intergenic | 50.0% |
| CCCACAAGCCCCAAAATAGA+TGG | - | chr6_4:45577771-45577790 | None:intergenic | 50.0% | |
| ACAAGGAGTTCTCAAGGCAG+AGG | + | chr6_4:45578269-45578288 | Msa0989260:CDS | 50.0% | |
| CTCTCTCCCCTCGACTTCTT+TGG | + | chr6_4:45573627-45573646 | Msa0989260:five_prime_UTR | 55.0% | |
| GTGAACCGACCAAGAAGTCG+CGG | - | chr6_4:45574632-45574651 | None:intergenic | 55.0% | |
| TATTTCAGGGTCGCGGAGGT+CGG | - | chr6_4:45576337-45576356 | None:intergenic | 55.0% | |
| CTTCGACGCTCCTCAAGATC+TGG | - | chr6_4:45577121-45577140 | None:intergenic | 55.0% | |
| !! | CAGATCTTGAGGAGCGTCGA+AGG | + | chr6_4:45577119-45577138 | Msa0989260:intron | 55.0% |
| AGGGTCCGCGACTTCTTGGT+CGG | + | chr6_4:45574624-45574643 | Msa0989260:CDS | 60.0% | |
| ! | GAACATGAGGCGTGTCGGTG+TGG | - | chr6_4:45576974-45576993 | None:intergenic | 60.0% |
| GGACAGGGTCCGCGACTTCT+TGG | + | chr6_4:45574620-45574639 | Msa0989260:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 45573615 | 45578538 | 45573615 | ID=Msa0989260;Name=Msa0989260 |
| chr6_4 | mRNA | 45573615 | 45578538 | 45573615 | ID=Msa0989260-mRNA-1;Parent=Msa0989260;Name=Msa0989260-mRNA-1;_AED=0.17;_eAED=0.17;_QI=107|1|1|1|0.75|0.66|9|205|343 |
| chr6_4 | exon | 45573615 | 45573648 | 45573615 | ID=Msa0989260-mRNA-1:exon:10256;Parent=Msa0989260-mRNA-1 |
| chr6_4 | exon | 45573799 | 45573865 | 45573799 | ID=Msa0989260-mRNA-1:exon:10257;Parent=Msa0989260-mRNA-1 |
| chr6_4 | exon | 45574326 | 45574685 | 45574326 | ID=Msa0989260-mRNA-1:exon:10258;Parent=Msa0989260-mRNA-1 |
| chr6_4 | exon | 45576321 | 45576442 | 45576321 | ID=Msa0989260-mRNA-1:exon:10259;Parent=Msa0989260-mRNA-1 |
| chr6_4 | exon | 45576525 | 45576720 | 45576525 | ID=Msa0989260-mRNA-1:exon:10260;Parent=Msa0989260-mRNA-1 |
| chr6_4 | exon | 45576897 | 45577014 | 45576897 | ID=Msa0989260-mRNA-1:exon:10261;Parent=Msa0989260-mRNA-1 |
| chr6_4 | exon | 45577122 | 45577169 | 45577122 | ID=Msa0989260-mRNA-1:exon:10262;Parent=Msa0989260-mRNA-1 |
| chr6_4 | exon | 45577701 | 45577801 | 45577701 | ID=Msa0989260-mRNA-1:exon:10263;Parent=Msa0989260-mRNA-1 |
| chr6_4 | exon | 45578241 | 45578538 | 45578241 | ID=Msa0989260-mRNA-1:exon:10264;Parent=Msa0989260-mRNA-1 |
| chr6_4 | five_prime_UTR | 45573615 | 45573648 | 45573615 | ID=Msa0989260-mRNA-1:five_prime_utr;Parent=Msa0989260-mRNA-1 |
| chr6_4 | five_prime_UTR | 45573799 | 45573865 | 45573799 | ID=Msa0989260-mRNA-1:five_prime_utr;Parent=Msa0989260-mRNA-1 |
| chr6_4 | five_prime_UTR | 45574326 | 45574331 | 45574326 | ID=Msa0989260-mRNA-1:five_prime_utr;Parent=Msa0989260-mRNA-1 |
| chr6_4 | CDS | 45574332 | 45574685 | 45574332 | ID=Msa0989260-mRNA-1:cds;Parent=Msa0989260-mRNA-1 |
| chr6_4 | CDS | 45576321 | 45576442 | 45576321 | ID=Msa0989260-mRNA-1:cds;Parent=Msa0989260-mRNA-1 |
| chr6_4 | CDS | 45576525 | 45576720 | 45576525 | ID=Msa0989260-mRNA-1:cds;Parent=Msa0989260-mRNA-1 |
| chr6_4 | CDS | 45576897 | 45577014 | 45576897 | ID=Msa0989260-mRNA-1:cds;Parent=Msa0989260-mRNA-1 |
| chr6_4 | CDS | 45577122 | 45577169 | 45577122 | ID=Msa0989260-mRNA-1:cds;Parent=Msa0989260-mRNA-1 |
| chr6_4 | CDS | 45577701 | 45577801 | 45577701 | ID=Msa0989260-mRNA-1:cds;Parent=Msa0989260-mRNA-1 |
| chr6_4 | CDS | 45578241 | 45578333 | 45578241 | ID=Msa0989260-mRNA-1:cds;Parent=Msa0989260-mRNA-1 |
| chr6_4 | three_prime_UTR | 45578334 | 45578538 | 45578334 | ID=Msa0989260-mRNA-1:three_prime_utr;Parent=Msa0989260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
