Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885830 | XP_013451989.1 | 89.835 | 364 | 16 | 1 | 1 | 364 | 1 | 343 | 0.0 | 677 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885830 | sp|Q8L518|CK2_ARATH | 59.195 | 348 | 120 | 2 | 17 | 364 | 20 | 345 | 5.93e-153 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885830 | B7FI98 | 89.835 | 364 | 16 | 1 | 1 | 364 | 1 | 343 | 0.0 | 677 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064300 | Msa0885830 | 0.821157 | 4.687131e-53 | -8.615850e-47 |
| Msa0169820 | Msa0885830 | 0.824998 | 5.954756e-54 | -8.615850e-47 |
| Msa0299660 | Msa0885830 | 0.812372 | 4.381732e-51 | -8.615850e-47 |
| Msa0885830 | Msa0913080 | 0.846859 | 1.666812e-59 | -8.615850e-47 |
| Msa0885830 | Msa0989260 | 0.807856 | 4.120639e-50 | -8.615850e-47 |
| Msa0885830 | Msa1335230 | 0.802668 | 5.029658e-49 | -8.615850e-47 |
| Msa0885830 | Msa1437130 | 0.810196 | 1.299816e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885830 | MtrunA17_Chr6g0466631 | 89.835 | 364 | 16 | 1 | 1 | 364 | 1 | 343 | 0.0 | 677 |
| Msa0885830 | MtrunA17_Chr1g0201341 | 72.176 | 363 | 80 | 1 | 1 | 363 | 1 | 342 | 0.0 | 558 |
| Msa0885830 | MtrunA17_Chr3g0081621 | 60.055 | 363 | 123 | 2 | 2 | 364 | 113 | 453 | 1.21e-161 | 462 |
| Msa0885830 | MtrunA17_Chr8g0354091 | 55.874 | 349 | 125 | 3 | 16 | 364 | 36 | 355 | 7.64e-143 | 409 |
| Msa0885830 | MtrunA17_Chr2g0307011 | 31.977 | 344 | 190 | 8 | 29 | 364 | 59 | 366 | 3.12e-49 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885830 | AT1G74320.1 | 59.195 | 348 | 120 | 2 | 17 | 364 | 20 | 345 | 6.03e-154 | 437 |
| Msa0885830 | AT4G09760.1 | 55.068 | 365 | 140 | 4 | 1 | 364 | 1 | 342 | 2.84e-151 | 430 |
| Msa0885830 | AT4G09760.2 | 55.068 | 365 | 140 | 4 | 1 | 364 | 1 | 342 | 2.84e-151 | 430 |
| Msa0885830 | AT1G71697.1 | 55.068 | 365 | 141 | 3 | 1 | 363 | 1 | 344 | 5.45e-149 | 424 |
| Msa0885830 | AT4G09760.3 | 49.593 | 246 | 100 | 4 | 1 | 245 | 1 | 223 | 5.09e-81 | 248 |
| Msa0885830 | AT4G09760.4 | 48.052 | 231 | 96 | 4 | 1 | 230 | 1 | 208 | 2.61e-72 | 224 |
| Msa0885830 | AT2G26830.1 | 33.533 | 334 | 183 | 6 | 35 | 360 | 58 | 360 | 2.76e-52 | 178 |
Find 79 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGCAAACCATCTATTT+TGG | 0.099275 | 6_1:+43000315 | Msa0885830:CDS |
| ATTTGTCATTGCACCCTTTA+AGG | 0.103491 | 6_1:-42996078 | None:intergenic |
| ATCCCCTTTCATTTGGATTT+TGG | 0.109294 | 6_1:+43001036 | Msa0885830:three_prime_UTR |
| GTTAAAGAAGCCTACTTTAT+TGG | 0.134694 | 6_1:+43000861 | Msa0885830:CDS |
| GAAAAGGATATAAAGAATTT+TGG | 0.185624 | 6_1:+42999113 | Msa0885830:CDS |
| ATAAAGTAGGCTTCTTTAAC+TGG | 0.261588 | 6_1:-43000858 | None:intergenic |
| GCAGCTGTGGCTGTAGATTT+AGG | 0.289983 | 6_1:+42996017 | Msa0885830:CDS |
| GCTATCAACGAAGATATTTC+AGG | 0.295078 | 6_1:-42998902 | None:intergenic |
| CGGTCATGTTAGAAGGGTTT+TGG | 0.309388 | 6_1:+42996136 | Msa0885830:CDS |
| TGTCACAATGATCTACAATA+TGG | 0.312751 | 6_1:+42999209 | Msa0885830:CDS |
| CTTTGTAATCCCCTTTCATT+TGG | 0.314612 | 6_1:+43001029 | Msa0885830:three_prime_UTR |
| TGTGGAGGTGAATCCCTTAA+AGG | 0.339290 | 6_1:+42996064 | Msa0885830:CDS |
| CTCTCTCCCCTCTACTTCTT+AGG | 0.343755 | 6_1:+42995232 | Msa0885830:five_prime_UTR |
| TCGACATACACTCAAATGTT+TGG | 0.349159 | 6_1:-42996211 | None:intergenic |
| TCAGAAGAAAATCAAGAGAT+TGG | 0.359374 | 6_1:+42999182 | Msa0885830:CDS |
| TTTGTCATTGCACCCTTTAA+GGG | 0.360563 | 6_1:-42996077 | None:intergenic |
| TGCGAATCATTTCTGTGAAA+TGG | 0.373754 | 6_1:+42999499 | Msa0885830:CDS |
| TTCGCAAGGTCAAATGCAAC+TGG | 0.390033 | 6_1:-42999482 | None:intergenic |
| AAAGGGTGCAATGACAAATC+AGG | 0.395718 | 6_1:+42996082 | Msa0885830:CDS |
| CTTCTTGGTCGGTTCACTAC+TGG | 0.399364 | 6_1:+42996254 | Msa0885830:CDS |
| AAATAAACTATAACAATTGT+AGG | 0.405948 | 6_1:-42998611 | None:intergenic |
| AAAGTGACGGTCATGTTAGA+AGG | 0.420023 | 6_1:+42996129 | Msa0885830:CDS |
| CCCACAAGCCCCAAAATAGA+TGG | 0.429365 | 6_1:-43000325 | None:intergenic |
| GTGCAAAGAAGGCTCAGATT+TGG | 0.434338 | 6_1:+42998963 | Msa0885830:CDS |
| ACTGTCATGATTTGATATAA+AGG | 0.440383 | 6_1:-42998638 | None:intergenic |
| ATCCCAAAATCCAAATGAAA+GGG | 0.450829 | 6_1:-43001039 | None:intergenic |
| GTGGAGGTGAATCCCTTAAA+GGG | 0.453217 | 6_1:+42996065 | Msa0885830:CDS |
| ATATTTCTCTTCTGCTTCAA+AGG | 0.453759 | 6_1:+42995443 | Msa0885830:five_prime_UTR |
| AGACATTTGAATTGTTGAAA+GGG | 0.457193 | 6_1:+42995961 | Msa0885830:CDS |
| AAGACATTTGAATTGTTGAA+AGG | 0.469355 | 6_1:+42995960 | Msa0885830:CDS |
| TCATATGCCTGGTGCAAAGA+AGG | 0.476216 | 6_1:+42998952 | Msa0885830:CDS |
| ATCTGAGCCTTCTTTGCACC+AGG | 0.486876 | 6_1:-42998959 | None:intergenic |
| GAACAGACCTAAGAAGTAGA+GGG | 0.487651 | 6_1:-42995239 | None:intergenic |
| TTTCACAATCTTCATATGCC+TGG | 0.492944 | 6_1:+42998941 | Msa0885830:CDS |
| TAAAAGTTTATGCTCCGAAA+AGG | 0.503936 | 6_1:+42999097 | Msa0885830:CDS |
| TTGAAGAGTTCATTCATGCC+CGG | 0.504881 | 6_1:+42996282 | Msa0885830:CDS |
| TATACATACTTGAGTTCTGA+AGG | 0.510778 | 6_1:+42999709 | Msa0885830:CDS |
| AGCAATTATGCCAATAAAGT+AGG | 0.516378 | 6_1:-43000871 | None:intergenic |
| CTCAGATTTGGCAGAGAATG+AGG | 0.517306 | 6_1:+42998975 | Msa0885830:CDS |
| AATCCCAAAATCCAAATGAA+AGG | 0.521684 | 6_1:-43001040 | None:intergenic |
| TATTTCAGGGTCGCGGAGGT+CGG | 0.525048 | 6_1:-42998888 | None:intergenic |
| TTTGAGTGTATGTCGAAGAA+TGG | 0.526924 | 6_1:+42996218 | Msa0885830:CDS |
| AAAGCCAAGTGATGCTGAAG+TGG | 0.528186 | 6_1:+43000262 | Msa0885830:CDS |
| TACAATTGACTTTGACTACA+AGG | 0.531304 | 6_1:+43000807 | Msa0885830:CDS |
| AGGGTCCGCGCCTTCTTGGT+CGG | 0.538855 | 6_1:+42996243 | Msa0885830:CDS |
| TGAAGAGTTCATTCATGCCC+GGG | 0.542011 | 6_1:+42996283 | Msa0885830:CDS |
| TATCCACATGCAGAAAGTGA+TGG | 0.548317 | 6_1:+42995932 | Msa0885830:intron |
| TGATCCACTTCAGCATCACT+TGG | 0.550037 | 6_1:-43000266 | None:intergenic |
| AATAAACTATAACAATTGTA+GGG | 0.550131 | 6_1:-42998610 | None:intergenic |
| GTGTATGTCGAAGAATGGAC+AGG | 0.552928 | 6_1:+42996223 | Msa0885830:CDS |
| ACAATATGGTAACATCATGA+TGG | 0.554878 | 6_1:+42999223 | Msa0885830:CDS |
| CAGATCTTGAGGAGCGTCGA+AGG | 0.559496 | 6_1:+42999680 | Msa0885830:intron |
| AGAACAGACCTAAGAAGTAG+AGG | 0.564883 | 6_1:-42995240 | None:intergenic |
| ATTATATGGCGAAGGAGTTG+AGG | 0.566600 | 6_1:+42996163 | Msa0885830:CDS |
| CTATCAACGAAGATATTTCA+GGG | 0.568554 | 6_1:-42998901 | None:intergenic |
| TAATGGTCTACCAGATCTTG+AGG | 0.574039 | 6_1:+42999669 | Msa0885830:intron |
| ACAAGGAGTTCTCAAGGCAG+AGG | 0.574763 | 6_1:+43000824 | Msa0885830:CDS |
| TTGGTTCGATTATATGGCGA+AGG | 0.583342 | 6_1:+42996155 | Msa0885830:CDS |
| AAGTGACGGTCATGTTAGAA+GGG | 0.593909 | 6_1:+42996130 | Msa0885830:CDS |
| TTGACTACAAGGAGTTCTCA+AGG | 0.595449 | 6_1:+43000818 | Msa0885830:CDS |
| GTCAAGAACATGAGGCGTGT+CGG | 0.599809 | 6_1:-42999537 | None:intergenic |
| ACGAAGATATTTCAGGGTCG+CGG | 0.603740 | 6_1:-42998895 | None:intergenic |
| CTTGACTACAGTAAATATCC+CGG | 0.613111 | 6_1:+42999554 | Msa0885830:CDS |
| TTTCACAGAAATGATTCGCA+AGG | 0.613220 | 6_1:-42999496 | None:intergenic |
| AATGAAAGTTCTTGCAGCTG+TGG | 0.613557 | 6_1:+42996004 | Msa0885830:CDS |
| AAGATATTTCAGGGTCGCGG+AGG | 0.619917 | 6_1:-42998892 | None:intergenic |
| GAACATGAGGCGTGTCGGTG+TGG | 0.622313 | 6_1:-42999532 | None:intergenic |
| TCCCAAAATCCAAATGAAAG+GGG | 0.623632 | 6_1:-43001038 | None:intergenic |
| GGATCAGTTAGCGAATCTTG+TGG | 0.624605 | 6_1:+43000283 | Msa0885830:CDS |
| CAGTAGTGAACCGACCAAGA+AGG | 0.632842 | 6_1:-42996253 | None:intergenic |
| AACAGACCTAAGAAGTAGAG+GGG | 0.645067 | 6_1:-42995238 | None:intergenic |
| GAATCATTTCTGTGAAATGG+CGG | 0.647449 | 6_1:+42999502 | Msa0885830:CDS |
| TCGCAAGGTCAAATGCAACT+GGG | 0.649429 | 6_1:-42999481 | None:intergenic |
| GATTGATGATGTGAGTACTG+TGG | 0.662221 | 6_1:+42996046 | Msa0885830:CDS |
| TTACTGTAGTCAAGAACATG+AGG | 0.665640 | 6_1:-42999545 | None:intergenic |
| GTGAACCGACCAAGAAGGCG+CGG | 0.686133 | 6_1:-42996248 | None:intergenic |
| TGTATGTCGAAGAATGGACA+GGG | 0.690528 | 6_1:+42996224 | Msa0885830:CDS |
| AATTGGCCGACGAAAAGTGA+CGG | 0.697156 | 6_1:+42996116 | Msa0885830:CDS |
| TGATGATGTGAGTACTGTGG+AGG | 0.701567 | 6_1:+42996049 | Msa0885830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTCATCAAAAAA+TGG | - | chr6_1:42995786-42995805 | None:intergenic | 10.0% |
| !!! | TTGTTTTATATACAAATAAA+AGG | + | chr6_1:42997145-42997164 | Msa0885830:intron | 10.0% |
| !!! | CATATAAGTTATAAATTTTA+TGG | + | chr6_1:42997508-42997527 | Msa0885830:intron | 10.0% |
| !!! | TATAAGTTATAAATTTTATG+GGG | + | chr6_1:42997510-42997529 | Msa0885830:intron | 10.0% |
| !!! | TACATAAATTTTAAATTTGA+GGG | + | chr6_1:42997540-42997559 | Msa0885830:intron | 10.0% |
| !!! | NNNNNNNNNNCAGTTATTTT+GGG | - | chr6_1:42998232-42998251 | None:intergenic | 10.0% |
| !! | AATTATAGTTATATTGTATT+AGG | - | chr6_1:42998379-42998398 | None:intergenic | 10.0% |
| !! | AGAAAAATGTATAAATAAAA+GGG | - | chr6_1:42998443-42998462 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+AGG | - | chr6_1:42998444-42998463 | None:intergenic | 10.0% |
| !! | TAGAAGTTGAAAAAAATAAT+GGG | - | chr6_1:42995501-42995520 | None:intergenic | 15.0% |
| !! | TTAGAAGTTGAAAAAAATAA+TGG | - | chr6_1:42995502-42995521 | None:intergenic | 15.0% |
| !! | AGATTAAGTAAATGATAAAA+TGG | - | chr6_1:42995682-42995701 | None:intergenic | 15.0% |
| !! | TTAATTCTAATAATAAAGTG+TGG | + | chr6_1:42996636-42996655 | Msa0885830:intron | 15.0% |
| !! | TAAAATTCAATAAAGCAAAA+GGG | - | chr6_1:42996865-42996884 | None:intergenic | 15.0% |
| !! | CTATGAAATAAAATAAAGAA+TGG | - | chr6_1:42997071-42997090 | None:intergenic | 15.0% |
| !!! | TCTTTATTTTATTTCATAGA+TGG | + | chr6_1:42997072-42997091 | Msa0885830:intron | 15.0% |
| !!! | CTACATAAATTTTAAATTTG+AGG | + | chr6_1:42997539-42997558 | Msa0885830:intron | 15.0% |
| !! | ACATTAATGTTAAATTTCAA+GGG | + | chr6_1:42997572-42997591 | Msa0885830:intron | 15.0% |
| !! | ATATATCAACATTATTAAAC+AGG | - | chr6_1:42998098-42998117 | None:intergenic | 15.0% |
| !!! | GACATTTTTTTTTAGTAAAT+GGG | - | chr6_1:42998210-42998229 | None:intergenic | 15.0% |
| !! | AAAATGGAATATATTGAATT+GGG | - | chr6_1:42998420-42998439 | None:intergenic | 15.0% |
| !! | AATAAACTATAACAATTGTA+GGG | - | chr6_1:42998613-42998632 | None:intergenic | 15.0% |
| !! | AAATAAACTATAACAATTGT+AGG | - | chr6_1:42998614-42998633 | None:intergenic | 15.0% |
| !! | TAAAAATAAATTCAAAGTTG+TGG | + | chr6_1:42998715-42998734 | Msa0885830:intron | 15.0% |
| !!! | AAAATTCTTTATATCCTTTT+CGG | - | chr6_1:42999114-42999133 | None:intergenic | 15.0% |
| !! | AAGTAAGCTTAAAAATATAA+TGG | - | chr6_1:42999404-42999423 | None:intergenic | 15.0% |
| !! | ATTGAAAATAAATGTAATTG+AGG | - | chr6_1:42999607-42999626 | None:intergenic | 15.0% |
| !! | CTAACAATAAAATTTATTGT+CGG | - | chr6_1:42999762-42999781 | None:intergenic | 15.0% |
| !!! | TAAAATTATAAGTTGATATG+TGG | - | chr6_1:43000648-43000667 | None:intergenic | 15.0% |
| !! | ATGATAAAATGGTTTGAATA+TGG | - | chr6_1:42995671-42995690 | None:intergenic | 20.0% |
| !!! | TTTTCATCTTTTTCTTCAAA+AGG | + | chr6_1:42995727-42995746 | Msa0885830:intron | 20.0% |
| !!! | TTTCATCTTTTTCTTCAAAA+GGG | + | chr6_1:42995728-42995747 | Msa0885830:intron | 20.0% |
| !!! | TTTTTCTTATTTATGATGCA+TGG | + | chr6_1:42995872-42995891 | Msa0885830:intron | 20.0% |
| !! | CTAAAATTCAATAAAGCAAA+AGG | - | chr6_1:42996866-42996885 | None:intergenic | 20.0% |
| !! | TAAAATACAATAAAGCAAAG+TGG | - | chr6_1:42996939-42996958 | None:intergenic | 20.0% |
| !!! | TTGCATATAAGTTTTAAGTT+TGG | + | chr6_1:42997473-42997492 | Msa0885830:intron | 20.0% |
| !! | CACATTAATGTTAAATTTCA+AGG | + | chr6_1:42997571-42997590 | Msa0885830:intron | 20.0% |
| !! | CATTAATGTTAAATTTCAAG+GGG | + | chr6_1:42997573-42997592 | Msa0885830:intron | 20.0% |
| !! | ATTAATGTTAAATTTCAAGG+GGG | + | chr6_1:42997574-42997593 | Msa0885830:intron | 20.0% |
| !! | CACATTAATGTTAAATTTCA+GGG | + | chr6_1:42997571-42997590 | Msa0885830:intron | 20.0% |
| !! | ACATTAATGTTAAATTTCAG+GGG | + | chr6_1:42997604-42997623 | Msa0885830:intron | 20.0% |
| !! | ATACATAGATAATTGAGAAA+AGG | + | chr6_1:42997955-42997974 | Msa0885830:intron | 20.0% |
| !!! | GGACATTTTTTTTTAGTAAA+TGG | - | chr6_1:42998211-42998230 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr6_1:42998346-42998365 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr6_1:42998347-42998366 | None:intergenic | 20.0% |
| !! | GAAAATGGAATATATTGAAT+TGG | - | chr6_1:42998421-42998440 | None:intergenic | 20.0% |
| !! | TGTATAAATAAAAGGGAAAA+TGG | - | chr6_1:42998436-42998455 | None:intergenic | 20.0% |
| !!! | GAAAAGGATATAAAGAATTT+TGG | + | chr6_1:42999113-42999132 | Msa0885830:CDS | 20.0% |
| !! | AGAAACAACTATTAGAAAAA+TGG | - | chr6_1:42999847-42999866 | None:intergenic | 20.0% |
| !! | AAGTGAACTAAAAGTTAATA+AGG | + | chr6_1:42999928-42999947 | Msa0885830:intron | 20.0% |
| !! | ATATAACTAAAAATGTGTGA+TGG | + | chr6_1:43000969-43000988 | Msa0885830:three_prime_UTR | 20.0% |
| ! | CAAACAAAGAAATAAGCATT+TGG | - | chr6_1:42995540-42995559 | None:intergenic | 25.0% |
| ! | ATGGTTTGAATATGGAATAA+TGG | - | chr6_1:42995663-42995682 | None:intergenic | 25.0% |
| ! | AAGACATTTGAATTGTTGAA+AGG | + | chr6_1:42995960-42995979 | Msa0885830:CDS | 25.0% |
| ! | AGACATTTGAATTGTTGAAA+GGG | + | chr6_1:42995961-42995980 | Msa0885830:CDS | 25.0% |
| !! | TGTTTTCCTTAATAAGTCAA+AGG | + | chr6_1:42996327-42996346 | Msa0885830:intron | 25.0% |
| !! | AAACTACCTTTGACTTATTA+AGG | - | chr6_1:42996336-42996355 | None:intergenic | 25.0% |
| !!! | GTGAAACATCATTTTAATTC+CGG | + | chr6_1:42996394-42996413 | Msa0885830:intron | 25.0% |
| !! | AGCATAAACTTTTCTTATAC+CGG | - | chr6_1:42996429-42996448 | None:intergenic | 25.0% |
| !! | TCTTGTGTTTTTCTATTCAT+TGG | + | chr6_1:42996484-42996503 | Msa0885830:intron | 25.0% |
| !! | CAGATGATTGTTAGTTTATT+TGG | + | chr6_1:42996514-42996533 | Msa0885830:intron | 25.0% |
| ! | GTAATTCCATTAGTAATGTT+TGG | + | chr6_1:42996555-42996574 | Msa0885830:intron | 25.0% |
| !! | GTATTTTCTATTAAACAGAG+AGG | - | chr6_1:42997294-42997313 | None:intergenic | 25.0% |
| ! | ACTAACGTTTAACAATTTCA+GGG | - | chr6_1:42997848-42997867 | None:intergenic | 25.0% |
| ! | AAAACTTATATGCAAACGAA+GGG | - | chr6_1:42997468-42997487 | None:intergenic | 25.0% |
| ! | TAAAACTTATATGCAAACGA+AGG | - | chr6_1:42997469-42997488 | None:intergenic | 25.0% |
| !!! | TATAAGTTTTAAGTTTGGAG+AGG | + | chr6_1:42997478-42997497 | Msa0885830:intron | 25.0% |
| ! | GCACATTAATGTTAAATTTC+AGG | + | chr6_1:42997570-42997589 | Msa0885830:intron | 25.0% |
| ! | CATTAATGTTAAATTTCAGG+GGG | + | chr6_1:42997605-42997624 | Msa0885830:intron | 25.0% |
| ! | ACTAACGTTTAACAATTTCA+GGG | + | chr6_1:42997848-42997867 | Msa0885830:intron | 25.0% |
| ! | ACTGTCATGATTTGATATAA+AGG | - | chr6_1:42998641-42998660 | None:intergenic | 25.0% |
| !!! | CATTTTTTTCTCCTTGTTTT+TGG | + | chr6_1:42998844-42998863 | Msa0885830:intron | 25.0% |
| !! | TATGCTTTGCATATTTTACT+AGG | + | chr6_1:42999057-42999076 | Msa0885830:intron | 25.0% |
| !! | TTGCATATTTTACTAGGAAA+TGG | + | chr6_1:42999063-42999082 | Msa0885830:intron | 25.0% |
| ! | TACAAGATTAATTTCGACTA+CGG | - | chr6_1:42999348-42999367 | None:intergenic | 25.0% |
| ! | AGTGATGGTATAAACTATAA+CGG | - | chr6_1:42999375-42999394 | None:intergenic | 25.0% |
| ! | TTTCTACTTATCAATGATAC+AGG | + | chr6_1:42999436-42999455 | Msa0885830:intron | 25.0% |
| !!! | TTGAGACATAAACTTGTTAA+TGG | + | chr6_1:42999652-42999671 | Msa0885830:intron | 25.0% |
| ! | TAGAGAAAAAAATCCAAATC+AGG | - | chr6_1:42999789-42999808 | None:intergenic | 25.0% |
| !!! | ATAGTTTGCTTGATTTTATG+TGG | + | chr6_1:42999808-42999827 | Msa0885830:intron | 25.0% |
| ! | TTCATATGTCTCTTCAATTT+CGG | + | chr6_1:42999954-42999973 | Msa0885830:intron | 25.0% |
| ! | TTAATTGTAAACTTGTACAC+AGG | + | chr6_1:43000236-43000255 | Msa0885830:intron | 25.0% |
| !!! | GCTTTTTCTTTTCACTTTTA+TGG | + | chr6_1:43000363-43000382 | Msa0885830:intron | 25.0% |
| ! | TGTGTAGTATTAGAATGAAT+GGG | - | chr6_1:43000526-43000545 | None:intergenic | 25.0% |
| ! | TTGTGTAGTATTAGAATGAA+TGG | - | chr6_1:43000527-43000546 | None:intergenic | 25.0% |
| !!! | CCTTGAATTATTTTGAGATT+CGG | + | chr6_1:43000619-43000638 | Msa0885830:intron | 25.0% |
| !! | TATGATGTCATTCTGAAACT+TGG | + | chr6_1:42995328-42995347 | Msa0885830:intron | 30.0% |
| ATATTTCTCTTCTGCTTCAA+AGG | + | chr6_1:42995443-42995462 | Msa0885830:five_prime_UTR | 30.0% | |
| ACACAGAAAATTGTTGCAAT+TGG | - | chr6_1:42995581-42995600 | None:intergenic | 30.0% | |
| ! | AATGACAAATCAGGTTTTTG+AGG | + | chr6_1:42996091-42996110 | Msa0885830:CDS | 30.0% |
| AAAGTTTATGCTTCGATAGA+AGG | + | chr6_1:42996437-42996456 | Msa0885830:intron | 30.0% | |
| TCCATTAGTAATGTTTGGTT+CGG | + | chr6_1:42996560-42996579 | Msa0885830:intron | 30.0% | |
| GATGATTAGAATGGTTTCTA+TGG | + | chr6_1:42996793-42996812 | Msa0885830:intron | 30.0% | |
| ATTAGAATGGTTTCTATGGT+TGG | + | chr6_1:42996797-42996816 | Msa0885830:intron | 30.0% | |
| TTAGAATGGTTTCTATGGTT+GGG | + | chr6_1:42996798-42996817 | Msa0885830:intron | 30.0% | |
| ! | TAGTCCAAAAAGCTTTTCTT+TGG | + | chr6_1:42996883-42996902 | Msa0885830:intron | 30.0% |
| ! | AGAACCAAAGAAAAGCTTTT+TGG | - | chr6_1:42996890-42996909 | None:intergenic | 30.0% |
| !! | GAAAAATGCTTAGCTTTGAA+AGG | + | chr6_1:42997027-42997046 | Msa0885830:intron | 30.0% |
| CAATAGTGTTTGGTATTGTT+TGG | - | chr6_1:42997221-42997240 | None:intergenic | 30.0% | |
| AGTTTCTGTCTATCAATATG+AGG | - | chr6_1:42997256-42997275 | None:intergenic | 30.0% | |
| ATTGATGAACCTTGCAATTT+CGG | - | chr6_1:42997904-42997923 | None:intergenic | 30.0% | |
| TTGATGTTTCGTTAACTACA+GGG | - | chr6_1:42997877-42997896 | None:intergenic | 30.0% | |
| ATTGATGTTTCGTTAACTAC+AGG | - | chr6_1:42997876-42997895 | None:intergenic | 30.0% | |
| TAACGTTTAACAATTTCAGG+GGG | - | chr6_1:42997850-42997869 | None:intergenic | 30.0% | |
| CTAACGTTTAACAATTTCAG+GGG | - | chr6_1:42997849-42997868 | None:intergenic | 30.0% | |
| GACTAACGTTTAACAATTTC+AGG | - | chr6_1:42997847-42997866 | None:intergenic | 30.0% | |
| AAACTTATATGCAAACGAAG+GGG | - | chr6_1:42997467-42997486 | None:intergenic | 30.0% | |
| GACTAACGTTTAACAATTTC+AGG | + | chr6_1:42997847-42997866 | Msa0885830:intron | 30.0% | |
| CTAACGTTTAACAATTTCAG+GGG | + | chr6_1:42997849-42997868 | Msa0885830:intron | 30.0% | |
| TAACGTTTAACAATTTCAGG+GGG | + | chr6_1:42997850-42997869 | Msa0885830:intron | 30.0% | |
| ATTGATGTTTCGTTAACTAC+AGG | + | chr6_1:42997876-42997895 | Msa0885830:intron | 30.0% | |
| TTGATGTTTCGTTAACTACA+GGG | + | chr6_1:42997877-42997896 | Msa0885830:intron | 30.0% | |
| ATTGATGAACCTTGCAATTT+CGG | + | chr6_1:42997904-42997923 | Msa0885830:intron | 30.0% | |
| ! | TGTTCCTTTTCAGTTACTTA+AGG | + | chr6_1:42998691-42998710 | Msa0885830:intron | 30.0% |
| ! | GTTCCTTTTCAGTTACTTAA+GGG | + | chr6_1:42998692-42998711 | Msa0885830:intron | 30.0% |
| TTACCCTTAAGTAACTGAAA+AGG | - | chr6_1:42998698-42998717 | None:intergenic | 30.0% | |
| ! | ACATTTGCAATTTGAAGTGT+CGG | + | chr6_1:42998798-42998817 | Msa0885830:intron | 30.0% |
| ! | TGTCTGAAATTCCAAAAACA+AGG | - | chr6_1:42998858-42998877 | None:intergenic | 30.0% |
| CTATCAACGAAGATATTTCA+GGG | - | chr6_1:42998904-42998923 | None:intergenic | 30.0% | |
| TAAAAGTTTATGCTCCGAAA+AGG | + | chr6_1:42999097-42999116 | Msa0885830:CDS | 30.0% | |
| !!! | GGATATAAAGAATTTTGGCT+TGG | + | chr6_1:42999118-42999137 | Msa0885830:CDS | 30.0% |
| TCAGAAGAAAATCAAGAGAT+TGG | + | chr6_1:42999182-42999201 | Msa0885830:CDS | 30.0% | |
| TGTCACAATGATCTACAATA+TGG | + | chr6_1:42999209-42999228 | Msa0885830:CDS | 30.0% | |
| ACAATATGGTAACATCATGA+TGG | + | chr6_1:42999223-42999242 | Msa0885830:CDS | 30.0% | |
| GTAGTCGAAATTAATCTTGT+AGG | + | chr6_1:42999347-42999366 | Msa0885830:intron | 30.0% | |
| ATATAATGGTACGTTAGTGA+TGG | - | chr6_1:42999390-42999409 | None:intergenic | 30.0% | |
| TGTATGAGCAATTCATTTAC+CGG | - | chr6_1:42999576-42999595 | None:intergenic | 30.0% | |
| ! | TATACATACTTGAGTTCTGA+AGG | + | chr6_1:42999709-42999728 | Msa0885830:CDS | 30.0% |
| TATTGTTAGAGATCCTGATT+TGG | + | chr6_1:42999773-42999792 | Msa0885830:intron | 30.0% | |
| CTTATGTGCTTGAAATTTGA+GGG | - | chr6_1:42999911-42999930 | None:intergenic | 30.0% | |
| ACTTATGTGCTTGAAATTTG+AGG | - | chr6_1:42999912-42999931 | None:intergenic | 30.0% | |
| AAATGGAGTTCAAATATCCT+CGG | + | chr6_1:43000106-43000125 | Msa0885830:intron | 30.0% | |
| ! | TAAAGAGTGCATAAACATCT+TGG | - | chr6_1:43000176-43000195 | None:intergenic | 30.0% |
| ! | TCTTGCAAACCATCTATTTT+GGG | + | chr6_1:43000316-43000335 | Msa0885830:CDS | 30.0% |
| TTCAAAATAGATACACAGCA+GGG | - | chr6_1:43000496-43000515 | None:intergenic | 30.0% | |
| ACGAAGTTGACAAAAAGAAA+TGG | - | chr6_1:43000565-43000584 | None:intergenic | 30.0% | |
| CCGAATCTCAAAATAATTCA+AGG | - | chr6_1:43000622-43000641 | None:intergenic | 30.0% | |
| ! | TACAATTGACTTTGACTACA+AGG | + | chr6_1:43000807-43000826 | Msa0885830:CDS | 30.0% |
| ATAAAGTAGGCTTCTTTAAC+TGG | - | chr6_1:43000861-43000880 | None:intergenic | 30.0% | |
| GTTAAAGAAGCCTACTTTAT+TGG | + | chr6_1:43000861-43000880 | Msa0885830:CDS | 30.0% | |
| AGCAATTATGCCAATAAAGT+AGG | - | chr6_1:43000874-43000893 | None:intergenic | 30.0% | |
| ATCCCAAAATCCAAATGAAA+GGG | - | chr6_1:43001042-43001061 | None:intergenic | 30.0% | |
| AATCCCAAAATCCAAATGAA+AGG | - | chr6_1:43001043-43001062 | None:intergenic | 30.0% | |
| TCATGTATTCTTCATTGCAG+TGG | + | chr6_1:42995378-42995397 | Msa0885830:intron | 35.0% | |
| TTTGTCATTGCACCCTTTAA+GGG | - | chr6_1:42996080-42996099 | None:intergenic | 35.0% | |
| ATTTGTCATTGCACCCTTTA+AGG | - | chr6_1:42996081-42996100 | None:intergenic | 35.0% | |
| !!! | ATCAGGTTTTTGAGGTGAAT+TGG | + | chr6_1:42996099-42996118 | Msa0885830:CDS | 35.0% |
| !!! | AGGGTTTTGGTTCGATTATA+TGG | + | chr6_1:42996149-42996168 | Msa0885830:CDS | 35.0% |
| ! | AGTTGAGGTTTTCTTCGATA+GGG | + | chr6_1:42996178-42996197 | Msa0885830:CDS | 35.0% |
| TCGACATACACTCAAATGTT+TGG | - | chr6_1:42996214-42996233 | None:intergenic | 35.0% | |
| TTTGAGTGTATGTCGAAGAA+TGG | + | chr6_1:42996218-42996237 | Msa0885830:CDS | 35.0% | |
| ATGATGTTAATCACATACCC+GGG | - | chr6_1:42996303-42996322 | None:intergenic | 35.0% | |
| GATGATGTTAATCACATACC+CGG | - | chr6_1:42996304-42996323 | None:intergenic | 35.0% | |
| TTAATTCCGGTACAAGATTC+CGG | + | chr6_1:42996407-42996426 | Msa0885830:intron | 35.0% | |
| ACCGAACCAAACATTACTAA+TGG | - | chr6_1:42996564-42996583 | None:intergenic | 35.0% | |
| AGTTGCAGTGATGATTAGAA+TGG | + | chr6_1:42996784-42996803 | Msa0885830:intron | 35.0% | |
| ! | TACCAAACACTATTGAGTTG+TGG | + | chr6_1:42997226-42997245 | Msa0885830:intron | 35.0% |
| TTCCACAACTCAATAGTGTT+TGG | - | chr6_1:42997231-42997250 | None:intergenic | 35.0% | |
| TTGATGAACCTTGCAATTTC+GGG | - | chr6_1:42997905-42997924 | None:intergenic | 35.0% | |
| TGATGTTTCGTTAACTACAG+GGG | - | chr6_1:42997878-42997897 | None:intergenic | 35.0% | |
| AACGTTTAACAATTTCAGGG+GGG | - | chr6_1:42997851-42997870 | None:intergenic | 35.0% | |
| AACTTATATGCAAACGAAGG+GGG | - | chr6_1:42997466-42997485 | None:intergenic | 35.0% | |
| TGTTGGATGGAGGAAATTAA+CGG | + | chr6_1:42997812-42997831 | Msa0885830:intron | 35.0% | |
| AACGTTTAACAATTTCAGGG+GGG | + | chr6_1:42997851-42997870 | Msa0885830:intron | 35.0% | |
| TGATGTTTCGTTAACTACAG+GGG | + | chr6_1:42997878-42997897 | Msa0885830:intron | 35.0% | |
| TTGATGAACCTTGCAATTTC+GGG | + | chr6_1:42997905-42997924 | Msa0885830:intron | 35.0% | |
| ! | TTGATTGGGCATAAGCTTTT+GGG | - | chr6_1:42998067-42998086 | None:intergenic | 35.0% |
| AACAGGAGAAAGACTTGATT+GGG | - | chr6_1:42998081-42998100 | None:intergenic | 35.0% | |
| AAACAGGAGAAAGACTTGAT+TGG | - | chr6_1:42998082-42998101 | None:intergenic | 35.0% | |
| AGTAAATGGGTCAGATATTC+CGG | - | chr6_1:42998197-42998216 | None:intergenic | 35.0% | |
| GATCTACTGTCATGTTATCA+TGG | - | chr6_1:42998539-42998558 | None:intergenic | 35.0% | |
| AGAAAGAGACAGAGAAAAAC+AGG | + | chr6_1:42998587-42998606 | Msa0885830:intron | 35.0% | |
| ACTGAAAAGGAACATGAACT+TGG | - | chr6_1:42998685-42998704 | None:intergenic | 35.0% | |
| GCTATCAACGAAGATATTTC+AGG | - | chr6_1:42998905-42998924 | None:intergenic | 35.0% | |
| TTTCACAATCTTCATATGCC+TGG | + | chr6_1:42998941-42998960 | Msa0885830:CDS | 35.0% | |
| TTTCACAGAAATGATTCGCA+AGG | - | chr6_1:42999499-42999518 | None:intergenic | 35.0% | |
| TGCGAATCATTTCTGTGAAA+TGG | + | chr6_1:42999499-42999518 | Msa0885830:CDS | 35.0% | |
| GAATCATTTCTGTGAAATGG+CGG | + | chr6_1:42999502-42999521 | Msa0885830:CDS | 35.0% | |
| TTACTGTAGTCAAGAACATG+AGG | - | chr6_1:42999548-42999567 | None:intergenic | 35.0% | |
| CTTGACTACAGTAAATATCC+CGG | + | chr6_1:42999554-42999573 | Msa0885830:CDS | 35.0% | |
| GTATGAGCAATTCATTTACC+GGG | - | chr6_1:42999575-42999594 | None:intergenic | 35.0% | |
| GACCTTGTAACTTCAACAAA+TGG | + | chr6_1:43000089-43000108 | Msa0885830:intron | 35.0% | |
| ! | CTCCATTTGTTGAAGTTACA+AGG | - | chr6_1:43000094-43000113 | None:intergenic | 35.0% |
| AGTTCAAATATCCTCGGAAA+CGG | + | chr6_1:43000112-43000131 | Msa0885830:intron | 35.0% | |
| ! | CTCTTGCAAACCATCTATTT+TGG | + | chr6_1:43000315-43000334 | Msa0885830:CDS | 35.0% |
| ! | CTTGCAAACCATCTATTTTG+GGG | + | chr6_1:43000317-43000336 | Msa0885830:CDS | 35.0% |
| GTTCAAAATAGATACACAGC+AGG | - | chr6_1:43000497-43000516 | None:intergenic | 35.0% | |
| CTCAAAATAATTCAAGGCTC+AGG | - | chr6_1:43000616-43000635 | None:intergenic | 35.0% | |
| CTTTGTAATCCCCTTTCATT+TGG | + | chr6_1:43001029-43001048 | Msa0885830:three_prime_UTR | 35.0% | |
| ! | ATCCCCTTTCATTTGGATTT+TGG | + | chr6_1:43001036-43001055 | Msa0885830:three_prime_UTR | 35.0% |
| ! | TCCCCTTTCATTTGGATTTT+GGG | + | chr6_1:43001037-43001056 | Msa0885830:three_prime_UTR | 35.0% |
| TCCCAAAATCCAAATGAAAG+GGG | - | chr6_1:43001041-43001060 | None:intergenic | 35.0% | |
| !!! | TGGATTTTGGGATTGAGTTA+AGG | + | chr6_1:43001049-43001068 | Msa0885830:three_prime_UTR | 35.0% |
| AACAGACCTAAGAAGTAGAG+GGG | - | chr6_1:42995241-42995260 | None:intergenic | 40.0% | |
| GAACAGACCTAAGAAGTAGA+GGG | - | chr6_1:42995242-42995261 | None:intergenic | 40.0% | |
| AGAACAGACCTAAGAAGTAG+AGG | - | chr6_1:42995243-42995262 | None:intergenic | 40.0% | |
| TATCCACATGCAGAAAGTGA+TGG | + | chr6_1:42995932-42995951 | Msa0885830:intron | 40.0% | |
| AATGAAAGTTCTTGCAGCTG+TGG | + | chr6_1:42996004-42996023 | Msa0885830:CDS | 40.0% | |
| !! | GATTGATGATGTGAGTACTG+TGG | + | chr6_1:42996046-42996065 | Msa0885830:CDS | 40.0% |
| ! | AAAGGGTGCAATGACAAATC+AGG | + | chr6_1:42996082-42996101 | Msa0885830:CDS | 40.0% |
| AAAGTGACGGTCATGTTAGA+AGG | + | chr6_1:42996129-42996148 | Msa0885830:CDS | 40.0% | |
| AAGTGACGGTCATGTTAGAA+GGG | + | chr6_1:42996130-42996149 | Msa0885830:CDS | 40.0% | |
| ! | TTGGTTCGATTATATGGCGA+AGG | + | chr6_1:42996155-42996174 | Msa0885830:CDS | 40.0% |
| ATTATATGGCGAAGGAGTTG+AGG | + | chr6_1:42996163-42996182 | Msa0885830:CDS | 40.0% | |
| ! | GAGTTGAGGTTTTCTTCGAT+AGG | + | chr6_1:42996177-42996196 | Msa0885830:CDS | 40.0% |
| TGTATGTCGAAGAATGGACA+GGG | + | chr6_1:42996224-42996243 | Msa0885830:CDS | 40.0% | |
| TTGAAGAGTTCATTCATGCC+CGG | + | chr6_1:42996282-42996301 | Msa0885830:CDS | 40.0% | |
| CTTATACCGGAATCTTGTAC+CGG | - | chr6_1:42996416-42996435 | None:intergenic | 40.0% | |
| TGATGAACCTTGCAATTTCG+GGG | - | chr6_1:42997906-42997925 | None:intergenic | 40.0% | |
| ATGTTTCGTTAACTACAGGG+GGG | - | chr6_1:42997880-42997899 | None:intergenic | 40.0% | |
| GATGTTTCGTTAACTACAGG+GGG | - | chr6_1:42997879-42997898 | None:intergenic | 40.0% | |
| ACTTATATGCAAACGAAGGG+GGG | - | chr6_1:42997465-42997484 | None:intergenic | 40.0% | |
| ATTTCAGGGGGATATTTGCA+AGG | + | chr6_1:42997617-42997636 | Msa0885830:intron | 40.0% | |
| GATGTTTCGTTAACTACAGG+GGG | + | chr6_1:42997879-42997898 | Msa0885830:intron | 40.0% | |
| TGATGAACCTTGCAATTTCG+GGG | + | chr6_1:42997906-42997925 | Msa0885830:intron | 40.0% | |
| ! | CTTGATTGGGCATAAGCTTT+TGG | - | chr6_1:42998068-42998087 | None:intergenic | 40.0% |
| GTAAATGGGTCAGATATTCC+GGG | - | chr6_1:42998196-42998215 | None:intergenic | 40.0% | |
| CCAAACTAGCTCAGATATTC+CGG | + | chr6_1:42998479-42998498 | Msa0885830:intron | 40.0% | |
| CAAACTAGCTCAGATATTCC+GGG | + | chr6_1:42998480-42998499 | Msa0885830:intron | 40.0% | |
| TAATGGTCTACCAGATCTTG+AGG | + | chr6_1:42999669-42999688 | Msa0885830:intron | 40.0% | |
| GCGTGAATTTGTCAGTGAAA+TGG | - | chr6_1:42999740-42999759 | None:intergenic | 40.0% | |
| CTTGAAATTTGAGGGTGACT+GGG | - | chr6_1:42999903-42999922 | None:intergenic | 40.0% | |
| AGCTTCACATCAGATAAGGA+AGG | - | chr6_1:43000013-43000032 | None:intergenic | 40.0% | |
| ! | AGCTAGCTTCACATCAGATA+AGG | - | chr6_1:43000017-43000036 | None:intergenic | 40.0% |
| CATAACTCTGCAACACACAA+AGG | - | chr6_1:43000783-43000802 | None:intergenic | 40.0% | |
| TTGACTACAAGGAGTTCTCA+AGG | + | chr6_1:43000818-43000837 | Msa0885830:CDS | 40.0% | |
| AAGCCATCACTTTCTGCATG+TGG | - | chr6_1:42995938-42995957 | None:intergenic | 45.0% | |
| ! | TGATGATGTGAGTACTGTGG+AGG | + | chr6_1:42996049-42996068 | Msa0885830:CDS | 45.0% |
| TGTGGAGGTGAATCCCTTAA+AGG | + | chr6_1:42996064-42996083 | Msa0885830:CDS | 45.0% | |
| GTGGAGGTGAATCCCTTAAA+GGG | + | chr6_1:42996065-42996084 | Msa0885830:CDS | 45.0% | |
| AATTGGCCGACGAAAAGTGA+CGG | + | chr6_1:42996116-42996135 | Msa0885830:CDS | 45.0% | |
| !!! | ACATGACCGTCACTTTTCGT+CGG | - | chr6_1:42996125-42996144 | None:intergenic | 45.0% |
| ! | CGGTCATGTTAGAAGGGTTT+TGG | + | chr6_1:42996136-42996155 | Msa0885830:CDS | 45.0% |
| GTGTATGTCGAAGAATGGAC+AGG | + | chr6_1:42996223-42996242 | Msa0885830:CDS | 45.0% | |
| TGAAGAGTTCATTCATGCCC+GGG | + | chr6_1:42996283-42996302 | Msa0885830:CDS | 45.0% | |
| !!! | TGGTTCGGTTTTTCGATGTG+TGG | + | chr6_1:42996575-42996594 | Msa0885830:intron | 45.0% |
| !! | GCTTAGCTTTGAAAGGCTTC+TGG | + | chr6_1:42997034-42997053 | Msa0885830:intron | 45.0% |
| ATGAACCTTGCAATTTCGGG+GGG | - | chr6_1:42997908-42997927 | None:intergenic | 45.0% | |
| GATGAACCTTGCAATTTCGG+GGG | - | chr6_1:42997907-42997926 | None:intergenic | 45.0% | |
| ATCAACATTTGTGCCACCCA+CGG | - | chr6_1:42997644-42997663 | None:intergenic | 45.0% | |
| ! | AAAAGGCATGCCATGTCAGA+GGG | - | chr6_1:42997745-42997764 | None:intergenic | 45.0% |
| TAACTGCCACATCAGCATGT+TGG | + | chr6_1:42997795-42997814 | Msa0885830:intron | 45.0% | |
| TGGATGGAGGAAATTAACGG+AGG | + | chr6_1:42997815-42997834 | Msa0885830:intron | 45.0% | |
| GGATGGAGGAAATTAACGGA+GGG | + | chr6_1:42997816-42997835 | Msa0885830:intron | 45.0% | |
| GATGGAGGAAATTAACGGAG+GGG | + | chr6_1:42997817-42997836 | Msa0885830:intron | 45.0% | |
| ATGGAGGAAATTAACGGAGG+GGG | + | chr6_1:42997818-42997837 | Msa0885830:intron | 45.0% | |
| GATGAACCTTGCAATTTCGG+GGG | + | chr6_1:42997907-42997926 | Msa0885830:intron | 45.0% | |
| ATGAACCTTGCAATTTCGGG+GGG | + | chr6_1:42997908-42997927 | Msa0885830:intron | 45.0% | |
| ! | AGCTTTTGGGCACATGACTT+AGG | - | chr6_1:42998054-42998073 | None:intergenic | 45.0% |
| CCGGAATATCTGAGCTAGTT+TGG | - | chr6_1:42998482-42998501 | None:intergenic | 45.0% | |
| ACGAAGATATTTCAGGGTCG+CGG | - | chr6_1:42998898-42998917 | None:intergenic | 45.0% | |
| TCATATGCCTGGTGCAAAGA+AGG | + | chr6_1:42998952-42998971 | Msa0885830:CDS | 45.0% | |
| GTGCAAAGAAGGCTCAGATT+TGG | + | chr6_1:42998963-42998982 | Msa0885830:CDS | 45.0% | |
| CTCAGATTTGGCAGAGAATG+AGG | + | chr6_1:42998975-42998994 | Msa0885830:CDS | 45.0% | |
| ! | TTGGCAGAGAATGAGGTACT+AGG | + | chr6_1:42998982-42999001 | Msa0885830:intron | 45.0% |
| TCGCAAGGTCAAATGCAACT+GGG | - | chr6_1:42999484-42999503 | None:intergenic | 45.0% | |
| TTCGCAAGGTCAAATGCAAC+TGG | - | chr6_1:42999485-42999504 | None:intergenic | 45.0% | |
| GCTTGAAATTTGAGGGTGAC+TGG | - | chr6_1:42999904-42999923 | None:intergenic | 45.0% | |
| TCCTCGGAAACGGTTGAAAA+TGG | + | chr6_1:43000122-43000141 | Msa0885830:intron | 45.0% | |
| AAAGCCAAGTGATGCTGAAG+TGG | + | chr6_1:43000262-43000281 | Msa0885830:CDS | 45.0% | |
| TGATCCACTTCAGCATCACT+TGG | - | chr6_1:43000269-43000288 | None:intergenic | 45.0% | |
| GGATCAGTTAGCGAATCTTG+TGG | + | chr6_1:43000283-43000302 | Msa0885830:CDS | 45.0% | |
| !!! | ACCATCTATTTTGGGGCTTG+TGG | + | chr6_1:43000324-43000343 | Msa0885830:CDS | 45.0% |
| !!! | CCATCTATTTTGGGGCTTGT+GGG | + | chr6_1:43000325-43000344 | Msa0885830:CDS | 45.0% |
| !!! | CATCTATTTTGGGGCTTGTG+GGG | + | chr6_1:43000326-43000345 | Msa0885830:CDS | 45.0% |
| !!! | TTATGTTTTTTTTTTTAAAT+TGG | + | chr6_1:42995829-42995848 | Msa0885830:intron | 5.0% |
| !!! | TATGTTTTTTTTTTTAAATT+GGG | + | chr6_1:42995830-42995849 | Msa0885830:intron | 5.0% |
| !!! | AAATAATAGAAAATATTTTT+TGG | + | chr6_1:42996727-42996746 | Msa0885830:intron | 5.0% |
| !!! | ATATAAGTTATAAATTTTAT+GGG | + | chr6_1:42997509-42997528 | Msa0885830:intron | 5.0% |
| CTCTCTCCCCTCTACTTCTT+AGG | + | chr6_1:42995232-42995251 | Msa0885830:five_prime_UTR | 50.0% | |
| GCAGCTGTGGCTGTAGATTT+AGG | + | chr6_1:42996017-42996036 | Msa0885830:CDS | 50.0% | |
| CAGTAGTGAACCGACCAAGA+AGG | - | chr6_1:42996256-42996275 | None:intergenic | 50.0% | |
| ! | CTTCTTGGTCGGTTCACTAC+TGG | + | chr6_1:42996254-42996273 | Msa0885830:CDS | 50.0% |
| TGAACCTTGCAATTTCGGGG+GGG | - | chr6_1:42997909-42997928 | None:intergenic | 50.0% | |
| GGGATATTTGCAAGGTCCGT+GGG | + | chr6_1:42997625-42997644 | Msa0885830:intron | 50.0% | |
| ATATTTGCAAGGTCCGTGGG+TGG | + | chr6_1:42997628-42997647 | Msa0885830:intron | 50.0% | |
| TCAATTACCCCCCTCTGACA+TGG | + | chr6_1:42997732-42997751 | Msa0885830:intron | 50.0% | |
| ! | AAAGGCATGCCATGTCAGAG+GGG | - | chr6_1:42997744-42997763 | None:intergenic | 50.0% |
| ! | GAAAAGGCATGCCATGTCAG+AGG | - | chr6_1:42997746-42997765 | None:intergenic | 50.0% |
| ! | GCATGCCTTTTCTGACCATG+TGG | + | chr6_1:42997754-42997773 | Msa0885830:intron | 50.0% |
| CACTGCCACATGGTCAGAAA+AGG | - | chr6_1:42997762-42997781 | None:intergenic | 50.0% | |
| TGCCACATCAGCATGTTGGA+TGG | + | chr6_1:42997799-42997818 | Msa0885830:intron | 50.0% | |
| CTCCATCCAACATGCTGATG+TGG | - | chr6_1:42997804-42997823 | None:intergenic | 50.0% | |
| CACATCAGCATGTTGGATGG+AGG | + | chr6_1:42997802-42997821 | Msa0885830:intron | 50.0% | |
| TGGAGGAAATTAACGGAGGG+GGG | + | chr6_1:42997819-42997838 | Msa0885830:intron | 50.0% | |
| AAAGACCCCCCGAAATTGCA+AGG | - | chr6_1:42997916-42997935 | None:intergenic | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | - | chr6_1:42998192-42998211 | None:intergenic | 50.0% | |
| CTAGCTCAGATATTCCGGGA+CGG | + | chr6_1:42998484-42998503 | Msa0885830:intron | 50.0% | |
| ATATACTACTCCCTCCGTCC+CGG | - | chr6_1:42998501-42998520 | None:intergenic | 50.0% | |
| ! | GTCTAGAGTCTGACAACGAC+TGG | - | chr6_1:42998778-42998797 | None:intergenic | 50.0% |
| AAGATATTTCAGGGTCGCGG+AGG | - | chr6_1:42998895-42998914 | None:intergenic | 50.0% | |
| ATCTGAGCCTTCTTTGCACC+AGG | - | chr6_1:42998962-42998981 | None:intergenic | 50.0% | |
| GTCAAGAACATGAGGCGTGT+CGG | - | chr6_1:42999540-42999559 | None:intergenic | 50.0% | |
| !! | GCCATTTTCAACCGTTTCCG+AGG | - | chr6_1:43000126-43000145 | None:intergenic | 50.0% |
| CCCACAAGCCCCAAAATAGA+TGG | - | chr6_1:43000328-43000347 | None:intergenic | 50.0% | |
| ACAAGGAGTTCTCAAGGCAG+AGG | + | chr6_1:43000824-43000843 | Msa0885830:CDS | 50.0% | |
| AAGACCCCCCCGAAATTGCA+AGG | + | chr6_1:42997367-42997386 | Msa0885830:intron | 55.0% | |
| GGGGATATTTGCAAGGTCCG+TGG | + | chr6_1:42997624-42997643 | Msa0885830:intron | 55.0% | |
| AAGGCATGCCATGTCAGAGG+GGG | - | chr6_1:42997743-42997762 | None:intergenic | 55.0% | |
| ATTTGATGCTCCCTCCGTCC+CGG | + | chr6_1:42998175-42998194 | Msa0885830:intron | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | - | chr6_1:42998188-42998207 | None:intergenic | 55.0% | |
| CTCAGATATTCCGGGACGGA+GGG | + | chr6_1:42998488-42998507 | Msa0885830:intron | 55.0% | |
| TATTTCAGGGTCGCGGAGGT+CGG | - | chr6_1:42998891-42998910 | None:intergenic | 55.0% | |
| CTTCGACGCTCCTCAAGATC+TGG | - | chr6_1:42999682-42999701 | None:intergenic | 55.0% | |
| !! | CAGATCTTGAGGAGCGTCGA+AGG | + | chr6_1:42999680-42999699 | Msa0885830:intron | 55.0% |
| GTGAACCGACCAAGAAGGCG+CGG | - | chr6_1:42996251-42996270 | None:intergenic | 60.0% | |
| AGGCATGCCATGTCAGAGGG+GGG | - | chr6_1:42997742-42997761 | None:intergenic | 60.0% | |
| ACCATGTGGCAGTGCCACGT+GGG | + | chr6_1:42997768-42997787 | Msa0885830:intron | 60.0% | |
| GTGGCAGTTAACTGCCCACG+TGG | - | chr6_1:42997785-42997804 | None:intergenic | 60.0% | |
| GGTCAGATATTCCGGGACGG+AGG | - | chr6_1:42998189-42998208 | None:intergenic | 60.0% | |
| GCTCAGATATTCCGGGACGG+AGG | + | chr6_1:42998487-42998506 | Msa0885830:intron | 60.0% | |
| ! | GAACATGAGGCGTGTCGGTG+TGG | - | chr6_1:42999535-42999554 | None:intergenic | 60.0% |
| AGGGTCCGCGCCTTCTTGGT+CGG | + | chr6_1:42996243-42996262 | Msa0885830:CDS | 65.0% | |
| GACCATGTGGCAGTGCCACG+TGG | + | chr6_1:42997767-42997786 | Msa0885830:intron | 65.0% | |
| GGACAGGGTCCGCGCCTTCT+TGG | + | chr6_1:42996239-42996258 | Msa0885830:CDS | 70.0% | |
| GCCCACGTGGCACTGCCACA+TGG | - | chr6_1:42997772-42997791 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 42995223 | 43001092 | 42995223 | ID=Msa0885830;Name=Msa0885830 |
| chr6_1 | mRNA | 42995223 | 43001092 | 42995223 | ID=Msa0885830-mRNA-1;Parent=Msa0885830;Name=Msa0885830-mRNA-1;_AED=0.09;_eAED=0.09;_QI=104|0.77|0.8|0.9|0.88|0.8|10|204|364 |
| chr6_1 | exon | 42995223 | 42995253 | 42995223 | ID=Msa0885830-mRNA-1:exon:9390;Parent=Msa0885830-mRNA-1 |
| chr6_1 | exon | 42995398 | 42995464 | 42995398 | ID=Msa0885830-mRNA-1:exon:9391;Parent=Msa0885830-mRNA-1 |
| chr6_1 | exon | 42995945 | 42996304 | 42995945 | ID=Msa0885830-mRNA-1:exon:9392;Parent=Msa0885830-mRNA-1 |
| chr6_1 | exon | 42998589 | 42998661 | 42998589 | ID=Msa0885830-mRNA-1:exon:9393;Parent=Msa0885830-mRNA-1 |
| chr6_1 | exon | 42998885 | 42998996 | 42998885 | ID=Msa0885830-mRNA-1:exon:9394;Parent=Msa0885830-mRNA-1 |
| chr6_1 | exon | 42999079 | 42999274 | 42999079 | ID=Msa0885830-mRNA-1:exon:9395;Parent=Msa0885830-mRNA-1 |
| chr6_1 | exon | 42999458 | 42999575 | 42999458 | ID=Msa0885830-mRNA-1:exon:9396;Parent=Msa0885830-mRNA-1 |
| chr6_1 | exon | 42999683 | 42999730 | 42999683 | ID=Msa0885830-mRNA-1:exon:9397;Parent=Msa0885830-mRNA-1 |
| chr6_1 | exon | 43000258 | 43000358 | 43000258 | ID=Msa0885830-mRNA-1:exon:9398;Parent=Msa0885830-mRNA-1 |
| chr6_1 | exon | 43000796 | 43001092 | 43000796 | ID=Msa0885830-mRNA-1:exon:9399;Parent=Msa0885830-mRNA-1 |
| chr6_1 | five_prime_UTR | 42995223 | 42995253 | 42995223 | ID=Msa0885830-mRNA-1:five_prime_utr;Parent=Msa0885830-mRNA-1 |
| chr6_1 | five_prime_UTR | 42995398 | 42995464 | 42995398 | ID=Msa0885830-mRNA-1:five_prime_utr;Parent=Msa0885830-mRNA-1 |
| chr6_1 | five_prime_UTR | 42995945 | 42995950 | 42995945 | ID=Msa0885830-mRNA-1:five_prime_utr;Parent=Msa0885830-mRNA-1 |
| chr6_1 | CDS | 42995951 | 42996304 | 42995951 | ID=Msa0885830-mRNA-1:cds;Parent=Msa0885830-mRNA-1 |
| chr6_1 | CDS | 42998589 | 42998661 | 42998589 | ID=Msa0885830-mRNA-1:cds;Parent=Msa0885830-mRNA-1 |
| chr6_1 | CDS | 42998885 | 42998996 | 42998885 | ID=Msa0885830-mRNA-1:cds;Parent=Msa0885830-mRNA-1 |
| chr6_1 | CDS | 42999079 | 42999274 | 42999079 | ID=Msa0885830-mRNA-1:cds;Parent=Msa0885830-mRNA-1 |
| chr6_1 | CDS | 42999458 | 42999575 | 42999458 | ID=Msa0885830-mRNA-1:cds;Parent=Msa0885830-mRNA-1 |
| chr6_1 | CDS | 42999683 | 42999730 | 42999683 | ID=Msa0885830-mRNA-1:cds;Parent=Msa0885830-mRNA-1 |
| chr6_1 | CDS | 43000258 | 43000358 | 43000258 | ID=Msa0885830-mRNA-1:cds;Parent=Msa0885830-mRNA-1 |
| chr6_1 | CDS | 43000796 | 43000888 | 43000796 | ID=Msa0885830-mRNA-1:cds;Parent=Msa0885830-mRNA-1 |
| chr6_1 | three_prime_UTR | 43000889 | 43001092 | 43000889 | ID=Msa0885830-mRNA-1:three_prime_utr;Parent=Msa0885830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
