AlfalfaGEDB | Msa0989470

M. sativa cultivar zhongmu-4 / Msa0989470

KEGG: K05605
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016020 GO:0044424 GO:0044444 GO:0044464
PFAM: PF16113.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989470	XP_003630825.2	93.079	419	9	4	1	400	1	418	0.0	775

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989470	sp\|Q9T0K7\|HIBC6_ARATH	70.207	386	96	2	34	400	36	421	0.0	555

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989470	I3S5F5	93.079	419	9	4	1	400	1	418	0.0	775

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0460400	Msa0989470	0.800221	1.595408e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989470	MtrunA17_Chr8g0390721	93.079	419	9	4	1	400	1	418	0.0	775
Msa0989470	MtrunA17_Chr8g0337981	34.551	356	200	10	55	394	22	360	3.36e-48	168
Msa0989470	MtrunA17_Chr8g0334701	32.044	362	210	11	48	391	40	383	5.99e-44	157
Msa0989470	MtrunA17_Chr3g0095921	29.805	359	217	11	53	395	21	360	1.76e-43	155
Msa0989470	MtrunA17_Chr1g0150221	29.781	366	217	12	43	390	46	389	2.35e-41	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989470	AT4G13360.1	70.207	386	96	2	34	400	36	421	0.0	555
Msa0989470	AT3G24360.1	65.271	406	118	2	18	400	13	418	0.0	540
Msa0989470	AT3G24360.2	61.823	406	128	4	18	400	13	414	3.33e-180	508
Msa0989470	AT3G24360.5	66.773	313	89	1	103	400	4	316	3.71e-152	432
Msa0989470	AT3G24360.3	65.424	295	86	2	121	400	21	314	4.19e-139	399
Msa0989470	AT3G24360.6	65.292	291	86	1	125	400	3	293	1.25e-138	397
Msa0989470	AT3G24360.4	64.189	296	83	2	18	290	13	308	5.17e-133	385
Msa0989470	AT5G65940.1	35.475	358	198	9	53	394	19	359	6.40e-60	199
Msa0989470	AT5G65940.4	35.475	358	198	9	53	394	19	359	6.40e-60	199
Msa0989470	AT2G30660.1	33.807	352	200	9	53	388	15	349	3.92e-56	189

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Find 126 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTTAGGAGCAGAGGT+GGG	0.675531	6_4:-46401344	Msa0989470:CDS
AAACGACTGTGAATTATCCA+CGG	0.650353	6_4:-46402454	Msa0989470:intron
AAAGGCACCGTTAATTCTAA+CGG	0.635338	6_4:-46406497	Msa0989470:CDS
AAAGTACTTTGATGTCCTGA+TGG	0.520744	6_4:+46402870	None:intergenic
AAAGTGGAAACCATCAAGGT+TGG	0.553124	6_4:-46401402	Msa0989470:CDS
AAAGTTAGGTTCATTCAAGG+AGG	0.694937	6_4:-46403261	Msa0989470:CDS
AAATAAGAAACCTAGGTTCA+TGG	0.454268	6_4:+46406433	None:intergenic
AAATAGATGGTGTTATCATC+GGG	0.505899	6_4:-46401242	Msa0989470:three_prime_UTR
AACCTTGATGGTTTCCACTT+TGG	0.340812	6_4:+46401404	None:intergenic
AAGACGGCTTCAACCTCACT+TGG	0.485673	6_4:+46401368	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTCAGAAGACAATAAATG+TGG	-	chr6_4:46401171-46401190	Msa0989470:three_prime_UTR	30.0%
AAATAAGAAACCTAGGTTCA+TGG	+	chr6_4:46401452-46401471	None:intergenic	30.0%
TATGACTCAATCATACATAC+CGG	+	chr6_4:46401865-46401884	None:intergenic	30.0%
TTGCAGATGTTCTACTTATT+TGG	-	chr6_4:46401972-46401991	Msa0989470:intron	30.0%
AATGCAGGTATGGATATTAA+AGG	-	chr6_4:46402038-46402057	Msa0989470:intron	30.0%
ATGCAGGTATGGATATTAAA+GGG	-	chr6_4:46402039-46402058	Msa0989470:intron	30.0%
AAGCATGTAAAAAATGCAAC+TGG	+	chr6_4:46402148-46402167	None:intergenic	30.0%
TTAAATATGCAACTCTTGCT+CGG	-	chr6_4:46402613-46402632	Msa0989470:intron	30.0%
CCTAAAATATGCAGCATAAT+AGG	+	chr6_4:46402965-46402984	None:intergenic	30.0%
CCATCCATGAAACTTATATA+TGG	+	chr6_4:46403038-46403057	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	46401120	46406784	46401120	ID=Msa0989470;Name=Msa0989470
chr6_4	mRNA	46401120	46406784	46401120	ID=Msa0989470-mRNA-1;Parent=Msa0989470;Name=Msa0989470-mRNA-1;_AED=0.14;_eAED=0.14;_QI=133\|0.88\|0.9\|1\|0.88\|0.9\|10\|208\|400
chr6_4	exon	46401120	46401429	46401120	ID=Msa0989470-mRNA-1:exon:10477;Parent=Msa0989470-mRNA-1
chr6_4	exon	46402252	46402353	46402252	ID=Msa0989470-mRNA-1:exon:10476;Parent=Msa0989470-mRNA-1
chr6_4	exon	46402455	46402582	46402455	ID=Msa0989470-mRNA-1:exon:10475;Parent=Msa0989470-mRNA-1
chr6_4	exon	46402726	46402904	46402726	ID=Msa0989470-mRNA-1:exon:10474;Parent=Msa0989470-mRNA-1
chr6_4	exon	46403242	46403326	46403242	ID=Msa0989470-mRNA-1:exon:10473;Parent=Msa0989470-mRNA-1
chr6_4	exon	46404578	46404674	46404578	ID=Msa0989470-mRNA-1:exon:10472;Parent=Msa0989470-mRNA-1
chr6_4	exon	46404786	46404920	46404786	ID=Msa0989470-mRNA-1:exon:10471;Parent=Msa0989470-mRNA-1
chr6_4	exon	46405795	46405859	46405795	ID=Msa0989470-mRNA-1:exon:10470;Parent=Msa0989470-mRNA-1
chr6_4	exon	46406040	46406141	46406040	ID=Msa0989470-mRNA-1:exon:10469;Parent=Msa0989470-mRNA-1
chr6_4	exon	46406444	46406784	46406444	ID=Msa0989470-mRNA-1:exon:10468;Parent=Msa0989470-mRNA-1
chr6_4	five_prime_UTR	46406652	46406784	46406652	ID=Msa0989470-mRNA-1:five_prime_utr;Parent=Msa0989470-mRNA-1
chr6_4	CDS	46406444	46406651	46406444	ID=Msa0989470-mRNA-1:cds;Parent=Msa0989470-mRNA-1
chr6_4	CDS	46406040	46406141	46406040	ID=Msa0989470-mRNA-1:cds;Parent=Msa0989470-mRNA-1
chr6_4	CDS	46405795	46405859	46405795	ID=Msa0989470-mRNA-1:cds;Parent=Msa0989470-mRNA-1
chr6_4	CDS	46404786	46404920	46404786	ID=Msa0989470-mRNA-1:cds;Parent=Msa0989470-mRNA-1
chr6_4	CDS	46404578	46404674	46404578	ID=Msa0989470-mRNA-1:cds;Parent=Msa0989470-mRNA-1
chr6_4	CDS	46403242	46403326	46403242	ID=Msa0989470-mRNA-1:cds;Parent=Msa0989470-mRNA-1
chr6_4	CDS	46402726	46402904	46402726	ID=Msa0989470-mRNA-1:cds;Parent=Msa0989470-mRNA-1
chr6_4	CDS	46402455	46402582	46402455	ID=Msa0989470-mRNA-1:cds;Parent=Msa0989470-mRNA-1
chr6_4	CDS	46402252	46402353	46402252	ID=Msa0989470-mRNA-1:cds;Parent=Msa0989470-mRNA-1
chr6_4	CDS	46401328	46401429	46401328	ID=Msa0989470-mRNA-1:cds;Parent=Msa0989470-mRNA-1
chr6_4	three_prime_UTR	46401120	46401327	46401120	ID=Msa0989470-mRNA-1:three_prime_utr;Parent=Msa0989470-mRNA-1

Gene Sequence

>Msa0989470

ATGCTACTACTTCGTACTGTCGTAGCTAATAATCGTTTTGTTCTTAGTTCATTTCTATCTTCTTCTTCTCTCTCCAAAATCAAACCTTTCTTCTCTTTCCGACCCATTTCTTCAATGGCTGAAGAATTCGTCAAAGGCACCGTTAATTCTAACGGTGTTGCCCTTCTCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGAAATGGATATAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAAATGTCAAATGTGTTCTGGTTGATAGCAGTTCCCCTCGTGCCTTTTGTGCCGGTATGGATATTAAAGGGGTTGTTGCTGAAATACAGAAGGACAAAAGCACACCTTTAGTGCAAAAGGTCTTCACAACCGAGTATTCTTTGATATGCAAAATTTCTGAGTACAAGAAACCATATATAAGTTTCATGGATGGAATAACAATGGGTTTTGGAATTGGCTTATCTGGTCATGGCCGCTATCGTATCATAACAGAGAGGACTGTTCTTGCAATGCCAGAAAATGGAATTGGCTTGTTCCCAGATGTAGGATTTGCTCATATAGCGGCTCAAAGTCCAGGAGAAGGAGCTGTTGATGCAATATATGTTGGCTTAGGAACACACTATGTGCCATCGGGAAAGTTAGGTTCATTCAAGGAGGCCCTTTTGGCAACAAACTTTTCTCAGGATCCCCATCAGGACATCAAAGTACTTTTAGCAAGATATGAGTCAAACCCGGACAGTGAGGCACAGTTAAAGTTGCTTTTACCTGAGATAATTTCTTCATTTGGAGGAAATAAATCTGTTATTGAAATCATCGAGGAGCTAAAAAAACACCAGTCGAGCACTGACTCTAATGTTGCTGAGTGGGCTGATGAAGCTCTCCAAGGCCTTGCAAAAGGTGCTCCCTTCTCCCTTTTCTTGACAAACAAGTACTTCTCTGCCGTTGCCTCTGCACTAGGCAAAAACGACTGTGAATTATCCACGCTTACCAGCGTAATGAAAACTGAGTATCGCATTGCCTTGAGGTCTTCGCTGCGACATGATTTCGTAGAAGGTGTCCGAGCAGTATTAGTGGATAAAGATCAGAACCCAAAGTGGAAACCATCAAGGTTGGAGGAAGTTGATCCAAGTGAGGTTGAAGCCGTCTTTAAACCCTTAGGAGCAGAGGTGGGCGAGTTGCCCGTGTAA

Protein sequence

>Msa0989470

MLLLRTVVANNRFVLSSFLSSSSLSKIKPFFSFRPISSMAEEFVKGTVNSNGVALLTLDRPKALNAMNLEMDIKYKSYLDEWESDPNVKCVLVDSSSPRAFCAGMDIKGVVAEIQKDKSTPLVQKVFTTEYSLICKISEYKKPYISFMDGITMGFGIGLSGHGRYRIITERTVLAMPENGIGLFPDVGFAHIAAQSPGEGAVDAIYVGLGTHYVPSGKLGSFKEALLATNFSQDPHQDIKVLLARYESNPDSEAQLKLLLPEIISSFGGNKSVIEIIEELKKHQSSTDSNVAEWADEALQGLAKGAPFSLFLTNKYFSAVASALGKNDCELSTLTSVMKTEYRIALRSSLRHDFVEGVRAVLVDKDQNPKWKPSRLEEVDPSEVEAVFKPLGAEVGELPV*