Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989910 | PNX96615.1 | 88.889 | 45 | 5 | 0 | 24 | 68 | 46 | 90 | 5.81e-20 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989910 | A0A2K3N0N0 | 88.889 | 45 | 5 | 0 | 24 | 68 | 46 | 90 | 2.77e-20 | 87.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0766630 | Msa0989910 | 0.812610 | 3.888522e-51 | -8.615850e-47 |
| Msa0768310 | Msa0989910 | 0.806856 | 6.713348e-50 | -8.615850e-47 |
| Msa0989910 | Msa1014540 | 0.816061 | 6.713962e-52 | -8.615850e-47 |
| Msa0989910 | Msa1074190 | 0.807992 | 3.854903e-50 | -8.615850e-47 |
| Msa0532350 | Msa0989910 | 0.807746 | 4.348658e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989910 | MtrunA17_Chr1g0205891 | 95.556 | 45 | 2 | 0 | 24 | 68 | 45 | 89 | 8.91e-24 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAACCTGATGCACATTT+TGG | 0.115362 | 6_4:-47992395 | None:intergenic |
| AAGGAAAGGTACCTTGAATT+TGG | 0.170309 | 6_4:-47988154 | None:intergenic |
| AAGGAAAGGTACCTTGAATT+TGG | 0.170309 | 6_4:-47991651 | None:intergenic |
| AAATCAATGACCAGTTCATC+AGG | 0.379567 | 6_4:-47989825 | None:intergenic |
| CAGGGTGATGTAGGGAGTTC+CGG | 0.391298 | 6_4:+47992326 | Msa0989910:intron |
| TTCACCGAACCCTGATGAAC+TGG | 0.404937 | 6_4:+47989815 | Msa0989910:five_prime_UTR |
| AATTTGGATTGTTTGAGAAC+AGG | 0.412475 | 6_4:-47991635 | None:intergenic |
| AATTTGGATTGTTTGAGAAT+AGG | 0.414865 | 6_4:-47988138 | None:intergenic |
| TTCATCAGGGTTCGGTGAAA+AGG | 0.435819 | 6_4:-47989811 | None:intergenic |
| TCTCAAACAATCCAAATTCA+AGG | 0.437260 | 6_4:+47988143 | Msa0989910:five_prime_UTR |
| TCTCAAACAATCCAAATTCA+AGG | 0.448633 | 6_4:+47991640 | Msa0989910:CDS |
| CAACGCCCAAAATGTGCATC+AGG | 0.459069 | 6_4:+47992389 | Msa0989910:CDS |
| TCGTGAATCCAGGGTGATGT+AGG | 0.475436 | 6_4:+47992317 | Msa0989910:intron |
| ATCTGTTATTAAATCATCTC+CGG | 0.475680 | 6_4:-47992345 | None:intergenic |
| TATTTGACATGGCAGATAGC+TGG | 0.477191 | 6_4:+47989626 | Msa0989910:intron |
| ACAGCTCCACAGAGAGTCAT+TGG | 0.496463 | 6_4:+47989688 | Msa0989910:five_prime_UTR |
| TGCATCAGGTTTCAAGTTGG+AGG | 0.497243 | 6_4:+47992403 | Msa0989910:CDS |
| ATGACCAGTTCATCAGGGTT+CGG | 0.516263 | 6_4:-47989819 | None:intergenic |
| CGTGAATCCAGGGTGATGTA+GGG | 0.521494 | 6_4:+47992318 | Msa0989910:intron |
| TTTGAGAACAGGAGCATCAC+CGG | 0.530276 | 6_4:-47991624 | None:intergenic |
| ACGAAGAAAGTCTATCACTT+TGG | 0.543973 | 6_4:-47989663 | None:intergenic |
| TTTCAAGTTGGAGGAAGCAA+TGG | 0.550337 | 6_4:+47992412 | Msa0989910:CDS |
| TTTGAGAATAGGAGCATCAC+CGG | 0.562343 | 6_4:-47988127 | None:intergenic |
| GTTGTTCATCTCAGAGCCAC+CGG | 0.582178 | 6_4:+47988108 | Msa0989910:five_prime_UTR |
| GTTGTTCATCTCAGAGCCAC+CGG | 0.582178 | 6_4:+47991605 | Msa0989910:CDS |
| TGTTTACCAATGACTCTCTG+TGG | 0.597192 | 6_4:-47989694 | None:intergenic |
| ATGTGCATCAGGTTTCAAGT+TGG | 0.600166 | 6_4:+47992400 | Msa0989910:CDS |
| AATCAATGACCAGTTCATCA+GGG | 0.626890 | 6_4:-47989824 | None:intergenic |
| ATCAAAATCAGATTCGACAT+CGG | 0.667858 | 6_4:+47992444 | Msa0989910:CDS |
| GAGAACAGGAGCATCACCGG+TGG | 0.691063 | 6_4:-47991621 | None:intergenic |
| GAGAATAGGAGCATCACCGG+TGG | 0.697312 | 6_4:-47988124 | None:intergenic |
| TGAGTTTGTGCTGAAGCGTG+TGG | 0.699677 | 6_4:-47991147 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATCTTAAAATTTTTAA+TGG | - | chr6_4:47988245-47988264 | None:intergenic | 10.0% |
| !!! | CATTAAAAATTTTAAGATTT+TGG | + | chr6_4:47988243-47988262 | Msa0989910:intron | 10.0% |
| !!! | TTATGACATTTTATTTTTTT+AGG | + | chr6_4:47990146-47990165 | Msa0989910:intron | 10.0% |
| !!! | CATTAAAAATTTTAAGATTT+TGG | + | chr6_4:47988243-47988262 | Msa0989910:intron | 10.0% |
| !! | GTGATAAAATTGTATTAAAA+AGG | - | chr6_4:47988710-47988729 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTTTCATTAGATA+TGG | + | chr6_4:47989048-47989067 | Msa0989910:intron | 15.0% |
| !! | TGTATAATGTAAGAAATTAT+TGG | + | chr6_4:47989847-47989866 | Msa0989910:intron | 15.0% |
| !! | TAAGATACACAATATAAAAA+GGG | - | chr6_4:47990896-47990915 | None:intergenic | 15.0% |
| !!! | AAAATTCTAAAAAATCAAAG+TGG | - | chr6_4:47990995-47991014 | None:intergenic | 15.0% |
| !!! | ACTTTGATTTTTTAGAATTT+TGG | + | chr6_4:47990994-47991013 | Msa0989910:intron | 15.0% |
| !!! | AACAATATATATTCACATTT+TGG | - | chr6_4:47991112-47991131 | None:intergenic | 15.0% |
| !! | TAATATATTCCAAAAACATA+AGG | - | chr6_4:47991346-47991365 | None:intergenic | 15.0% |
| !! | ATATTATGTCAATTTAGTTA+TGG | + | chr6_4:47991360-47991379 | Msa0989910:intron | 15.0% |
| !!! | TACCTTTCCTTTTTAATTAA+TGG | + | chr6_4:47988166-47988185 | Msa0989910:intron | 20.0% |
| !!! | ACCTTTCCTTTTTAATTAAT+GGG | + | chr6_4:47988167-47988186 | Msa0989910:intron | 20.0% |
| !! | AAAAGACCCATTAATTAAAA+AGG | - | chr6_4:47988176-47988195 | None:intergenic | 20.0% |
| !!! | AAGGTTTTAATTGAATTGAA+TGG | + | chr6_4:47988332-47988351 | Msa0989910:intron | 20.0% |
| !! | AATAATTTAAATGCTGACAA+TGG | + | chr6_4:47989369-47989388 | Msa0989910:intron | 20.0% |
| !! | ATAATTTAAATGCTGACAAT+GGG | + | chr6_4:47989370-47989389 | Msa0989910:intron | 20.0% |
| !! | TCTTACATATATATTTGACA+TGG | + | chr6_4:47989615-47989634 | Msa0989910:intron | 20.0% |
| !! | TATAATTAACAAGAAGCAAA+AGG | - | chr6_4:47990105-47990124 | None:intergenic | 20.0% |
| !!! | TGACATTTTATTTTTTTAGG+CGG | + | chr6_4:47990149-47990168 | Msa0989910:intron | 20.0% |
| !! | AATTAATATGTGTAGTTAGT+AGG | + | chr6_4:47990215-47990234 | Msa0989910:intron | 20.0% |
| !! | TTTACATGAAATAAATTTGC+TGG | - | chr6_4:47990595-47990614 | None:intergenic | 20.0% |
| !! | GCAAATTTATTTCATGTAAA+TGG | + | chr6_4:47990595-47990614 | Msa0989910:intron | 20.0% |
| !! | TATAAAAAGGGACAAAAATA+TGG | - | chr6_4:47990884-47990903 | None:intergenic | 20.0% |
| !! | CTAAGATACACAATATAAAA+AGG | - | chr6_4:47990897-47990916 | None:intergenic | 20.0% |
| !! | TAAGAGAAAATGAAAACATA+AGG | - | chr6_4:47990968-47990987 | None:intergenic | 20.0% |
| !!! | TATGTTTTCATTTTCTCTTA+TGG | + | chr6_4:47990968-47990987 | Msa0989910:intron | 20.0% |
| !!! | ATGTTTTCATTTTCTCTTAT+GGG | + | chr6_4:47990969-47990988 | Msa0989910:intron | 20.0% |
| !! | GTACAATTCAATACAATTAT+TGG | - | chr6_4:47991420-47991439 | None:intergenic | 20.0% |
| !!! | TACCTTTCCTTTTTAATTAA+TGG | + | chr6_4:47988166-47988185 | Msa0989910:intron | 20.0% |
| !!! | ACCTTTCCTTTTTAATTAAT+GGG | + | chr6_4:47988167-47988186 | Msa0989910:intron | 20.0% |
| !! | AAAAGACCCATTAATTAAAA+AGG | - | chr6_4:47988176-47988195 | None:intergenic | 20.0% |
| !!! | AAATTTGAGAAGGTTTTAAT+TGG | + | chr6_4:47988323-47988342 | Msa0989910:intron | 20.0% |
| !! | AAAAATCAATTCTTTCTTAG+GGG | - | chr6_4:47992093-47992112 | None:intergenic | 20.0% |
| !! | CAAAAATCAATTCTTTCTTA+GGG | - | chr6_4:47992094-47992113 | None:intergenic | 20.0% |
| !! | ACAAAAATCAATTCTTTCTT+AGG | - | chr6_4:47992095-47992114 | None:intergenic | 20.0% |
| !! | TTTTCATCTTTTTGTAACAG+TGG | + | chr6_4:47988086-47988105 | Msa0989910:five_prime_UTR | 25.0% |
| ! | AATTTGGATTGTTTGAGAAT+AGG | - | chr6_4:47988141-47988160 | None:intergenic | 25.0% |
| ! | ACCCATTAATTAAAAAGGAA+AGG | - | chr6_4:47988171-47988190 | None:intergenic | 25.0% |
| ! | TTGTAGGATTAAATTTGAGA+AGG | + | chr6_4:47988313-47988332 | Msa0989910:intron | 25.0% |
| ! | GAACTATGTATGAATAGAAT+TGG | - | chr6_4:47988615-47988634 | None:intergenic | 25.0% |
| ! | TAGGGAGATTTCATAAATAT+TGG | + | chr6_4:47988674-47988693 | Msa0989910:intron | 25.0% |
| ! | TCAACTATGTTAAATGTGAA+AGG | + | chr6_4:47988771-47988790 | Msa0989910:intron | 25.0% |
| ! | TTGTCTGTTTCATTGTAAAT+CGG | - | chr6_4:47989161-47989180 | None:intergenic | 25.0% |
| ! | TACTTACTTGAATCAATAGT+GGG | + | chr6_4:47989216-47989235 | Msa0989910:intron | 25.0% |
| ! | AGAATAATGTCAAAAACTTG+AGG | - | chr6_4:47989290-47989309 | None:intergenic | 25.0% |
| ! | TATCAAATGAAATGTGGTAT+GGG | - | chr6_4:47989325-47989344 | None:intergenic | 25.0% |
| ! | ATATCAAATGAAATGTGGTA+TGG | - | chr6_4:47989326-47989345 | None:intergenic | 25.0% |
| ! | ATTGTGCAATCTAAATCAAA+AGG | - | chr6_4:47989352-47989371 | None:intergenic | 25.0% |
| ! | TAATTTAAATGCTGACAATG+GGG | + | chr6_4:47989371-47989390 | Msa0989910:intron | 25.0% |
| !! | CTCTGAAAGTCATTATATTA+AGG | + | chr6_4:47989521-47989540 | Msa0989910:intron | 25.0% |
| ! | TTGTTGTGTAAAAACTATAG+AGG | + | chr6_4:47989981-47990000 | Msa0989910:intron | 25.0% |
| ! | AACTATAGAGGAAAAATTGT+AGG | + | chr6_4:47989993-47990012 | Msa0989910:intron | 25.0% |
| ! | GGTAAAAACATAAAATTGCT+TGG | + | chr6_4:47990047-47990066 | Msa0989910:intron | 25.0% |
| !!! | GACATTTTATTTTTTTAGGC+GGG | + | chr6_4:47990150-47990169 | Msa0989910:intron | 25.0% |
| !!! | ACATTTTATTTTTTTAGGCG+GGG | + | chr6_4:47990151-47990170 | Msa0989910:intron | 25.0% |
| ! | TGATAGGAATTTGAGTATTA+TGG | - | chr6_4:47990331-47990350 | None:intergenic | 25.0% |
| ! | TTATCAATTGGTATTATTGC+TGG | - | chr6_4:47990427-47990446 | None:intergenic | 25.0% |
| ! | GTGTTTGGATAATTATCAAT+TGG | - | chr6_4:47990439-47990458 | None:intergenic | 25.0% |
| ! | ATTAAGCAGTATGAAATGAT+TGG | - | chr6_4:47990526-47990545 | None:intergenic | 25.0% |
| ! | AATCATTTCATACTGCTTAA+TGG | + | chr6_4:47990525-47990544 | Msa0989910:intron | 25.0% |
| ! | ATCATTTCATACTGCTTAAT+GGG | + | chr6_4:47990526-47990545 | Msa0989910:intron | 25.0% |
| !!! | TACTACTGTTTCTGAAATTT+AGG | - | chr6_4:47990741-47990760 | None:intergenic | 25.0% |
| !!! | TTTTAGAATTTTGGCTTTGA+TGG | + | chr6_4:47991003-47991022 | Msa0989910:intron | 25.0% |
| ! | TAAAGACACTCTTAAAATGA+AGG | - | chr6_4:47991289-47991308 | None:intergenic | 25.0% |
| !!! | TTAAGAGTGTCTTTACATAT+TGG | + | chr6_4:47991294-47991313 | Msa0989910:intron | 25.0% |
| !! | TTATTCATGCCTTATGTTTT+TGG | + | chr6_4:47991334-47991353 | Msa0989910:intron | 25.0% |
| !! | TTTTCATCTTTTTGTGATAG+TGG | + | chr6_4:47991583-47991602 | Msa0989910:intron | 25.0% |
| ! | ACCCATTAATTAAAAAGGAA+AGG | - | chr6_4:47988171-47988190 | None:intergenic | 25.0% |
| ! | TTGTAGGATTAAATTTGAGA+AGG | + | chr6_4:47988313-47988332 | Msa0989910:intron | 25.0% |
| ! | ATTAACCTAGAAAGTTATGT+AGG | + | chr6_4:47992124-47992143 | Msa0989910:intron | 25.0% |
| !! | AGTTATGTAGGAAGATATTT+TGG | + | chr6_4:47992136-47992155 | Msa0989910:intron | 25.0% |
| ! | ATCTGTTATTAAATCATCTC+CGG | - | chr6_4:47992348-47992367 | None:intergenic | 25.0% |
| TCTCAAACAATCCAAATTCA+AGG | + | chr6_4:47988143-47988162 | Msa0989910:five_prime_UTR | 30.0% | |
| CAAAAAGCAAACATGAAACA+GGG | - | chr6_4:47988420-47988439 | None:intergenic | 30.0% | |
| !!! | TTTCATGTTTGCTTTTTGCT+TGG | + | chr6_4:47988422-47988441 | Msa0989910:intron | 30.0% |
| AGAAGTCTAAGAAAAACTAC+AGG | + | chr6_4:47988897-47988916 | Msa0989910:intron | 30.0% | |
| AACCATATGTTATCTGTTTC+AGG | + | chr6_4:47989009-47989028 | Msa0989910:intron | 30.0% | |
| AACCTGAAACAGATAACATA+TGG | - | chr6_4:47989014-47989033 | None:intergenic | 30.0% | |
| !! | ATGTTATCTGTTTCAGGTTT+AGG | + | chr6_4:47989015-47989034 | Msa0989910:intron | 30.0% |
| !! | TGTTATCTGTTTCAGGTTTA+GGG | + | chr6_4:47989016-47989035 | Msa0989910:intron | 30.0% |
| !! | TATGGTTCACAAGAGTATTA+TGG | + | chr6_4:47989066-47989085 | Msa0989910:intron | 30.0% |
| ! | AAGTCTTTTCTTGCTACATA+GGG | - | chr6_4:47989114-47989133 | None:intergenic | 30.0% |
| ! | TAAGTCTTTTCTTGCTACAT+AGG | - | chr6_4:47989115-47989134 | None:intergenic | 30.0% |
| CTACTTACTTGAATCAATAG+TGG | + | chr6_4:47989215-47989234 | Msa0989910:intron | 30.0% | |
| TTCTCACATATAGAAAATGC+TGG | + | chr6_4:47989459-47989478 | Msa0989910:intron | 30.0% | |
| ! | ACATATAGAAAATGCTGGTT+TGG | + | chr6_4:47989464-47989483 | Msa0989910:intron | 30.0% |
| !! | ATATTTCTGATCCTGGTTTT+GGG | + | chr6_4:47989917-47989936 | Msa0989910:intron | 30.0% |
| ATATTAATAACCCCAAAACC+AGG | - | chr6_4:47989931-47989950 | None:intergenic | 30.0% | |
| ! | AGAGGAAAAATTGTAGGTTT+TGG | + | chr6_4:47989999-47990018 | Msa0989910:intron | 30.0% |
| ACAAAGAGATAGCCATAAAA+AGG | - | chr6_4:47990025-47990044 | None:intergenic | 30.0% | |
| TTTATGGCTATCTCTTTGTT+TGG | + | chr6_4:47990026-47990045 | Msa0989910:intron | 30.0% | |
| ! | GTAGTATGAGATGCTTTTAA+GGG | - | chr6_4:47990287-47990306 | None:intergenic | 30.0% |
| ! | AGTAGTATGAGATGCTTTTA+AGG | - | chr6_4:47990288-47990307 | None:intergenic | 30.0% |
| GATAATTATCCAAACACTTG+AGG | + | chr6_4:47990442-47990461 | Msa0989910:intron | 30.0% | |
| !!! | GATATCTAGCTTTTAATGGA+GGG | - | chr6_4:47990470-47990489 | None:intergenic | 30.0% |
| !!! | TGATATCTAGCTTTTAATGG+AGG | - | chr6_4:47990471-47990490 | None:intergenic | 30.0% |
| TCCATTAAAAGCTAGATATC+AGG | + | chr6_4:47990470-47990489 | Msa0989910:intron | 30.0% | |
| CCATTAAAAGCTAGATATCA+GGG | + | chr6_4:47990471-47990490 | Msa0989910:intron | 30.0% | |
| CATTAAAAGCTAGATATCAG+GGG | + | chr6_4:47990472-47990491 | Msa0989910:intron | 30.0% | |
| ATTAAAAGCTAGATATCAGG+GGG | + | chr6_4:47990473-47990492 | Msa0989910:intron | 30.0% | |
| TCATTTCATACTGCTTAATG+GGG | + | chr6_4:47990527-47990546 | Msa0989910:intron | 30.0% | |
| !!! | ATTCACATTTTGGAATTAGC+AGG | - | chr6_4:47991102-47991121 | None:intergenic | 30.0% |
| TGAACTTAAAGATTCTTGCA+AGG | + | chr6_4:47991208-47991227 | Msa0989910:intron | 30.0% | |
| GTCAATTTAGTTATGGATCA+TGG | + | chr6_4:47991367-47991386 | Msa0989910:intron | 30.0% | |
| AATTTAGTTATGGATCATGG+TGG | + | chr6_4:47991370-47991389 | Msa0989910:intron | 30.0% | |
| AATTTGGATTGTTTGAGAAC+AGG | - | chr6_4:47991638-47991657 | None:intergenic | 30.0% | |
| TCTCAAACAATCCAAATTCA+AGG | + | chr6_4:47988143-47988162 | Msa0989910:five_prime_UTR | 30.0% | |
| GAACTACGTATGAATAGAAT+TGG | - | chr6_4:47991857-47991876 | None:intergenic | 30.0% | |
| TCAACTATGCTAAATGTGAA+AGG | + | chr6_4:47992013-47992032 | Msa0989910:intron | 30.0% | |
| TGATAGAATCTCACTTTAAG+TGG | + | chr6_4:47992037-47992056 | Msa0989910:intron | 30.0% | |
| TTTAAGTGGTACAACATATG+TGG | + | chr6_4:47992051-47992070 | Msa0989910:intron | 30.0% | |
| ATCTTCCTACATAACTTTCT+AGG | - | chr6_4:47992132-47992151 | None:intergenic | 30.0% | |
| ACTCTAACCAACATAAATCA+CGG | - | chr6_4:47992254-47992273 | None:intergenic | 30.0% | |
| !! | TTTCTATTTTTCGTGAATCC+AGG | + | chr6_4:47992307-47992326 | Msa0989910:intron | 30.0% |
| !! | TTCTATTTTTCGTGAATCCA+GGG | + | chr6_4:47992308-47992327 | Msa0989910:intron | 30.0% |
| !! | AAGGAAAGGTACCTTGAATT+TGG | - | chr6_4:47988157-47988176 | None:intergenic | 35.0% |
| TTTCAGAAGCTGAATGTTGT+AGG | + | chr6_4:47988297-47988316 | Msa0989910:intron | 35.0% | |
| !!! | TCTTTTGAGTTCTAGAGATG+AGG | + | chr6_4:47988390-47988409 | Msa0989910:intron | 35.0% |
| GCAAAAAGCAAACATGAAAC+AGG | - | chr6_4:47988421-47988440 | None:intergenic | 35.0% | |
| !!! | TGTTTGCTTTTTGCTTGGAA+TGG | + | chr6_4:47988427-47988446 | Msa0989910:intron | 35.0% |
| TAAGAAGCCGCATTAAGAAA+AGG | - | chr6_4:47988480-47988499 | None:intergenic | 35.0% | |
| TCTTAATGCGGCTTCTTAAA+TGG | + | chr6_4:47988482-47988501 | Msa0989910:intron | 35.0% | |
| CGGCTTCTTAAATGGATAAA+TGG | + | chr6_4:47988490-47988509 | Msa0989910:intron | 35.0% | |
| TGTACACCAACATTTACTGA+GGG | - | chr6_4:47988558-47988577 | None:intergenic | 35.0% | |
| ATGTACACCAACATTTACTG+AGG | - | chr6_4:47988559-47988578 | None:intergenic | 35.0% | |
| !! | TGTCTACCTTTGGAACTATA+CGG | + | chr6_4:47988641-47988660 | Msa0989910:intron | 35.0% |
| GTTTATCCGTATAGTTCCAA+AGG | - | chr6_4:47988650-47988669 | None:intergenic | 35.0% | |
| ACTATACGGATAAACACTCT+AGG | + | chr6_4:47988655-47988674 | Msa0989910:intron | 35.0% | |
| CTATACGGATAAACACTCTA+GGG | + | chr6_4:47988656-47988675 | Msa0989910:intron | 35.0% | |
| GGATGATAGAATCTCACTTT+AGG | + | chr6_4:47988792-47988811 | Msa0989910:intron | 35.0% | |
| TGATAGAATCTCACTTTAGG+TGG | + | chr6_4:47988795-47988814 | Msa0989910:intron | 35.0% | |
| TTTAGGTGGTACAACATTTG+TGG | + | chr6_4:47988809-47988828 | Msa0989910:intron | 35.0% | |
| TGGAGGGTAGTTCAATAATT+GGG | + | chr6_4:47988870-47988889 | Msa0989910:intron | 35.0% | |
| ! | CATGATTCACCAGAGTATTA+CGG | + | chr6_4:47988965-47988984 | Msa0989910:intron | 35.0% |
| TGAAAAAGACCGTAATACTC+TGG | - | chr6_4:47988977-47988996 | None:intergenic | 35.0% | |
| ATTAAAAACCATGCTCCACT+TGG | + | chr6_4:47989180-47989199 | Msa0989910:intron | 35.0% | |
| ! | TGAAATGTGGTATGGGTTAA+AGG | - | chr6_4:47989318-47989337 | None:intergenic | 35.0% |
| GGTGCATATCAAATGAAATG+TGG | - | chr6_4:47989331-47989350 | None:intergenic | 35.0% | |
| TATATACCAACATCAAGCAC+AGG | - | chr6_4:47989431-47989450 | None:intergenic | 35.0% | |
| ACGAAGAAAGTCTATCACTT+TGG | - | chr6_4:47989666-47989685 | None:intergenic | 35.0% | |
| AATCAATGACCAGTTCATCA+GGG | - | chr6_4:47989827-47989846 | None:intergenic | 35.0% | |
| AAATCAATGACCAGTTCATC+AGG | - | chr6_4:47989828-47989847 | None:intergenic | 35.0% | |
| ! | ATGATGCATATTTCTGATCC+TGG | + | chr6_4:47989910-47989929 | Msa0989910:intron | 35.0% |
| !! | CATATTTCTGATCCTGGTTT+TGG | + | chr6_4:47989916-47989935 | Msa0989910:intron | 35.0% |
| !!! | TATTTCTGATCCTGGTTTTG+GGG | + | chr6_4:47989918-47989937 | Msa0989910:intron | 35.0% |
| !! | TGTAGGTTTTGGCCTTTTTA+TGG | + | chr6_4:47990010-47990029 | Msa0989910:intron | 35.0% |
| !! | TGTCTAGATAGAAGTACTAC+TGG | + | chr6_4:47990238-47990257 | Msa0989910:intron | 35.0% |
| !! | TATGAGATGCTTTTAAGGGA+GGG | - | chr6_4:47990283-47990302 | None:intergenic | 35.0% |
| ATACTACTCAATGTGAGACT+TGG | + | chr6_4:47990300-47990319 | Msa0989910:intron | 35.0% | |
| TACTACTCAATGTGAGACTT+GGG | + | chr6_4:47990301-47990320 | Msa0989910:intron | 35.0% | |
| GCTTTACCTATTTGAGCTAT+CGG | + | chr6_4:47990398-47990417 | Msa0989910:intron | 35.0% | |
| !!! | CCCTGATATCTAGCTTTTAA+TGG | - | chr6_4:47990474-47990493 | None:intergenic | 35.0% |
| TTAAAAGCTAGATATCAGGG+GGG | + | chr6_4:47990474-47990493 | Msa0989910:intron | 35.0% | |
| AAGCAGTATGAAATGATTGG+TGG | - | chr6_4:47990523-47990542 | None:intergenic | 35.0% | |
| CATTTCATACTGCTTAATGG+GGG | + | chr6_4:47990528-47990547 | Msa0989910:intron | 35.0% | |
| ! | CAAGTTTTCATGCTTGATGA+GGG | - | chr6_4:47990800-47990819 | None:intergenic | 35.0% |
| !!! | GAAAACTTGCTGGTTTTGTA+AGG | + | chr6_4:47990811-47990830 | Msa0989910:intron | 35.0% |
| !!! | TTTTGGCTTTGATGGAAAAC+TGG | + | chr6_4:47991011-47991030 | Msa0989910:intron | 35.0% |
| !!! | TGTCAACTACGCTTGTTTTA+TGG | + | chr6_4:47991035-47991054 | Msa0989910:intron | 35.0% |
| AACACTAAAATGACAGTTGC+TGG | + | chr6_4:47991067-47991086 | Msa0989910:intron | 35.0% | |
| AGATTCTTGCAAGGTAGAAA+TGG | + | chr6_4:47991217-47991236 | Msa0989910:intron | 35.0% | |
| TTTACGAACAGAAGTGAGTA+GGG | - | chr6_4:47991481-47991500 | None:intergenic | 35.0% | |
| !! | AAGGAAAGGTACCTTGAATT+TGG | - | chr6_4:47988157-47988176 | None:intergenic | 35.0% |
| !! | TGTCTACCTTTGGAATTACA+CGG | + | chr6_4:47991883-47991902 | Msa0989910:intron | 35.0% |
| GTTTATCCGTGTAATTCCAA+AGG | - | chr6_4:47991892-47991911 | None:intergenic | 35.0% | |
| CAATATTTGAGAAATCTCCC+TGG | - | chr6_4:47991918-47991937 | None:intergenic | 35.0% | |
| CAGGGAGATTTCTCAAATAT+TGG | + | chr6_4:47991916-47991935 | Msa0989910:intron | 35.0% | |
| AACAACATTGAACTTCGTGT+GGG | - | chr6_4:47991972-47991991 | None:intergenic | 35.0% | |
| TAACAACATTGAACTTCGTG+TGG | - | chr6_4:47991973-47991992 | None:intergenic | 35.0% | |
| TCTTTCTTAGGGGCTTATAT+AGG | - | chr6_4:47992083-47992102 | None:intergenic | 35.0% | |
| ! | TGAAACCTGATGCACATTTT+GGG | - | chr6_4:47992397-47992416 | None:intergenic | 35.0% |
| ! | TTGAAACCTGATGCACATTT+TGG | - | chr6_4:47992398-47992417 | None:intergenic | 35.0% |
| !! | GTCGAATCTGATTTTGATGA+CGG | - | chr6_4:47992442-47992461 | None:intergenic | 35.0% |
| !! | TTTGAGAATAGGAGCATCAC+CGG | - | chr6_4:47988130-47988149 | None:intergenic | 40.0% |
| TTGCTTGGAATGGTTTGATG+TGG | + | chr6_4:47988437-47988456 | Msa0989910:intron | 40.0% | |
| ! | AGCCATGCCTTTTCTTAATG+CGG | + | chr6_4:47988470-47988489 | Msa0989910:intron | 40.0% |
| GTTCATGTGTTGTCTACCTT+TGG | + | chr6_4:47988631-47988650 | Msa0989910:intron | 40.0% | |
| TTTGTGGTGAAGACCTGTAT+AGG | + | chr6_4:47988825-47988844 | Msa0989910:intron | 40.0% | |
| ! | ACCTGATTAGCTCTTCTTAG+GGG | - | chr6_4:47988851-47988870 | None:intergenic | 40.0% |
| ! | CACCTGATTAGCTCTTCTTA+GGG | - | chr6_4:47988852-47988871 | None:intergenic | 40.0% |
| GTGGAGGGTAGTTCAATAAT+TGG | + | chr6_4:47988869-47988888 | Msa0989910:intron | 40.0% | |
| GGAGGGTAGTTCAATAATTG+GGG | + | chr6_4:47988871-47988890 | Msa0989910:intron | 40.0% | |
| !! | CTTGAATCAATAGTGGGCAT+TGG | + | chr6_4:47989222-47989241 | Msa0989910:intron | 40.0% |
| ! | GGTGCAGACATTTTTCTGTA+TGG | + | chr6_4:47989401-47989420 | Msa0989910:intron | 40.0% |
| TATTTGACATGGCAGATAGC+TGG | + | chr6_4:47989626-47989645 | Msa0989910:intron | 40.0% | |
| TGTTTACCAATGACTCTCTG+TGG | - | chr6_4:47989697-47989716 | None:intergenic | 40.0% | |
| CTATTTACTCTACCCTCATC+TGG | + | chr6_4:47989721-47989740 | Msa0989910:intron | 40.0% | |
| !! | GTATGAGATGCTTTTAAGGG+AGG | - | chr6_4:47990284-47990303 | None:intergenic | 40.0% |
| ATATCAGGGGGGAATAACTA+AGG | + | chr6_4:47990485-47990504 | Msa0989910:intron | 40.0% | |
| ATACTGCTTAATGGGGGAAT+TGG | + | chr6_4:47990534-47990553 | Msa0989910:intron | 40.0% | |
| !! | TTTGCTGGAGCATTGTGATA+GGG | - | chr6_4:47990580-47990599 | None:intergenic | 40.0% |
| !! | ATTTGCTGGAGCATTGTGAT+AGG | - | chr6_4:47990581-47990600 | None:intergenic | 40.0% |
| GCTCATAGTTATAGTCTCGT+AGG | + | chr6_4:47990704-47990723 | Msa0989910:intron | 40.0% | |
| ACAGTAGTAGAACTGAACCA+CGG | + | chr6_4:47990752-47990771 | Msa0989910:intron | 40.0% | |
| TCATGCTTGATGAGGGAAAT+TGG | - | chr6_4:47990793-47990812 | None:intergenic | 40.0% | |
| ! | GCAAGTTTTCATGCTTGATG+AGG | - | chr6_4:47990801-47990820 | None:intergenic | 40.0% |
| CATCAAGCATGAAAACTTGC+TGG | + | chr6_4:47990801-47990820 | Msa0989910:intron | 40.0% | |
| ACATCAGGCTTGTCACATAT+GGG | - | chr6_4:47990861-47990880 | None:intergenic | 40.0% | |
| GGGACAAAAATATGGACATC+AGG | - | chr6_4:47990876-47990895 | None:intergenic | 40.0% | |
| !!! | ACTACGCTTGTTTTATGGCA+TGG | + | chr6_4:47991040-47991059 | Msa0989910:intron | 40.0% |
| !!! | CTACGCTTGTTTTATGGCAT+GGG | + | chr6_4:47991041-47991060 | Msa0989910:intron | 40.0% |
| !!! | TACGCTTGTTTTATGGCATG+GGG | + | chr6_4:47991042-47991061 | Msa0989910:intron | 40.0% |
| CAGTGTTCTTCACAATCTGT+TGG | + | chr6_4:47991254-47991273 | Msa0989910:intron | 40.0% | |
| CTTTACGAACAGAAGTGAGT+AGG | - | chr6_4:47991482-47991501 | None:intergenic | 40.0% | |
| CTACTCACTTCTGTTCGTAA+AGG | + | chr6_4:47991480-47991499 | Msa0989910:intron | 40.0% | |
| CTACAACATTCAGCTTCTGA+AGG | - | chr6_4:47988299-47988318 | None:intergenic | 40.0% | |
| CTTCAGAAGCTGAATGTTGT+AGG | + | chr6_4:47991765-47991784 | Msa0989910:intron | 40.0% | |
| GTTCATGTGTTGTCTACCTT+TGG | + | chr6_4:47988631-47988650 | Msa0989910:intron | 40.0% | |
| ATTACACGGATAAACACTCC+AGG | + | chr6_4:47991897-47991916 | Msa0989910:intron | 40.0% | |
| TTACACGGATAAACACTCCA+GGG | + | chr6_4:47991898-47991917 | Msa0989910:intron | 40.0% | |
| AGTGTGCACAACAAAGCTAT+AGG | - | chr6_4:47992193-47992212 | None:intergenic | 40.0% | |
| TTGTGTGCCGTGATTTATGT+TGG | + | chr6_4:47992244-47992263 | Msa0989910:intron | 40.0% | |
| ! | ATGTGCATCAGGTTTCAAGT+TGG | + | chr6_4:47992400-47992419 | Msa0989910:CDS | 40.0% |
| !! | TTTCAAGTTGGAGGAAGCAA+TGG | + | chr6_4:47992412-47992431 | Msa0989910:CDS | 40.0% |
| AGCCGCATTAAGAAAAGGCA+TGG | - | chr6_4:47988475-47988494 | None:intergenic | 45.0% | |
| ACATCGCCCTCAGTAAATGT+TGG | + | chr6_4:47988549-47988568 | Msa0989910:intron | 45.0% | |
| ! | CCACCTGATTAGCTCTTCTT+AGG | - | chr6_4:47988853-47988872 | None:intergenic | 45.0% |
| CCTAAGAAGAGCTAATCAGG+TGG | + | chr6_4:47988850-47988869 | Msa0989910:intron | 45.0% | |
| AAGAAGAGCTAATCAGGTGG+AGG | + | chr6_4:47988853-47988872 | Msa0989910:intron | 45.0% | |
| AGAAGAGCTAATCAGGTGGA+GGG | + | chr6_4:47988854-47988873 | Msa0989910:intron | 45.0% | |
| ! | CTTTTCTTGCTACATAGGGC+TGG | - | chr6_4:47989110-47989129 | None:intergenic | 45.0% |
| AAAACCATGCTCCACTTGGT+AGG | + | chr6_4:47989184-47989203 | Msa0989910:intron | 45.0% | |
| ATGCTGACAATGGGGAAAGA+AGG | + | chr6_4:47989379-47989398 | Msa0989910:intron | 45.0% | |
| TGCTGACAATGGGGAAAGAA+GGG | + | chr6_4:47989380-47989399 | Msa0989910:intron | 45.0% | |
| GGATTTCCTGTGCTTGATGT+TGG | + | chr6_4:47989422-47989441 | Msa0989910:intron | 45.0% | |
| !! | ACCCTCATCTGGCTCTTTAA+AGG | + | chr6_4:47989732-47989751 | Msa0989910:intron | 45.0% |
| ! | GCCTTTAAAGAGCCAGATGA+GGG | - | chr6_4:47989736-47989755 | None:intergenic | 45.0% |
| ! | AGCCTTTAAAGAGCCAGATG+AGG | - | chr6_4:47989737-47989756 | None:intergenic | 45.0% |
| !! | TTCATCAGGGTTCGGTGAAA+AGG | - | chr6_4:47989814-47989833 | None:intergenic | 45.0% |
| ATGACCAGTTCATCAGGGTT+CGG | - | chr6_4:47989822-47989841 | None:intergenic | 45.0% | |
| GGAGGGTTCATATGAGCTAA+TGG | - | chr6_4:47990266-47990285 | None:intergenic | 45.0% | |
| TGGTTGCCGATAGCTCAAAT+AGG | - | chr6_4:47990407-47990426 | None:intergenic | 45.0% | |
| TTGGACAACCCATAACACCA+AGG | + | chr6_4:47990553-47990572 | Msa0989910:intron | 45.0% | |
| !! | GATAGGGACCTTGGTGTTAT+GGG | - | chr6_4:47990564-47990583 | None:intergenic | 45.0% |
| !! | TGATAGGGACCTTGGTGTTA+TGG | - | chr6_4:47990565-47990584 | None:intergenic | 45.0% |
| GGATAGACAAAAAGCAACCG+TGG | - | chr6_4:47990772-47990791 | None:intergenic | 45.0% | |
| GACATCAGGCTTGTCACATA+TGG | - | chr6_4:47990862-47990881 | None:intergenic | 45.0% | |
| !! | TTTGAGAACAGGAGCATCAC+CGG | - | chr6_4:47991627-47991646 | None:intergenic | 45.0% |
| GTGGTACAACATATGTGGAG+AGG | + | chr6_4:47992056-47992075 | Msa0989910:intron | 45.0% | |
| !! | TGCATCAGGTTTCAAGTTGG+AGG | + | chr6_4:47992403-47992422 | Msa0989910:CDS | 45.0% |
| !!! | ATTAAAAATTTTAAGATTTT+GGG | + | chr6_4:47988244-47988263 | Msa0989910:intron | 5.0% |
| !!! | ATTAAAAATTTTAAGATTTT+GGG | + | chr6_4:47988244-47988263 | Msa0989910:intron | 5.0% |
| GTTGTTCATCTCAGAGCCAC+CGG | + | chr6_4:47988108-47988127 | Msa0989910:five_prime_UTR | 50.0% | |
| CTCTTCTTAGGGGCCTATAC+AGG | - | chr6_4:47988841-47988860 | None:intergenic | 50.0% | |
| GCCCCTAAGAAGAGCTAATC+AGG | + | chr6_4:47988847-47988866 | Msa0989910:intron | 50.0% | |
| CAATCCTACCAAGTGGAGCA+TGG | - | chr6_4:47989191-47989210 | None:intergenic | 50.0% | |
| CATGCTCCACTTGGTAGGAT+TGG | + | chr6_4:47989189-47989208 | Msa0989910:intron | 50.0% | |
| ACAGCTCCACAGAGAGTCAT+TGG | + | chr6_4:47989688-47989707 | Msa0989910:five_prime_UTR | 50.0% | |
| TTCACCGAACCCTGATGAAC+TGG | + | chr6_4:47989815-47989834 | Msa0989910:five_prime_UTR | 50.0% | |
| CGGGGATTTGTAGAGTCGTA+TGG | + | chr6_4:47990169-47990188 | Msa0989910:intron | 50.0% | |
| !! | CTCAAGAGCGGTGCTATGAT+AGG | - | chr6_4:47990347-47990366 | None:intergenic | 50.0% |
| TGGAGGGTTCCTCAAGTGTT+TGG | - | chr6_4:47990454-47990473 | None:intergenic | 50.0% | |
| ! | GAGCATTGTGATAGGGACCT+TGG | - | chr6_4:47990573-47990592 | None:intergenic | 50.0% |
| CAGGCTTGTCACATATGGGA+TGG | - | chr6_4:47990857-47990876 | None:intergenic | 50.0% | |
| TGAGTTTGTGCTGAAGCGTG+TGG | - | chr6_4:47991150-47991169 | None:intergenic | 50.0% | |
| GTTGTTCATCTCAGAGCCAC+CGG | + | chr6_4:47988108-47988127 | Msa0989910:five_prime_UTR | 50.0% | |
| TCGTGAATCCAGGGTGATGT+AGG | + | chr6_4:47992317-47992336 | Msa0989910:intron | 50.0% | |
| CGTGAATCCAGGGTGATGTA+GGG | + | chr6_4:47992318-47992337 | Msa0989910:intron | 50.0% | |
| CAACGCCCAAAATGTGCATC+AGG | + | chr6_4:47992389-47992408 | Msa0989910:CDS | 50.0% | |
| !! | GAGAATAGGAGCATCACCGG+TGG | - | chr6_4:47988127-47988146 | None:intergenic | 55.0% |
| GCTCCACTTGGTAGGATTGG+CGG | + | chr6_4:47989192-47989211 | Msa0989910:intron | 55.0% | |
| TAGCCGCCAATCCTACCAAG+TGG | - | chr6_4:47989198-47989217 | None:intergenic | 55.0% | |
| GGGATGTCAGCTCTCAAGAG+CGG | - | chr6_4:47990359-47990378 | None:intergenic | 55.0% | |
| GCTCTTGAGAGCTGACATCC+CGG | + | chr6_4:47990358-47990377 | Msa0989910:intron | 55.0% | |
| ATCCCGGTGGTTGCACACTA+CGG | + | chr6_4:47990374-47990393 | Msa0989910:intron | 55.0% | |
| CAGGGTGATGTAGGGAGTTC+CGG | + | chr6_4:47992326-47992345 | Msa0989910:intron | 55.0% | |
| CTTGAGAGCTGACATCCCGG+TGG | + | chr6_4:47990361-47990380 | Msa0989910:intron | 60.0% | |
| !! | GAGAACAGGAGCATCACCGG+TGG | - | chr6_4:47991624-47991643 | None:intergenic | 60.0% |
| CGGAACTCCCTACATCACCC+TGG | - | chr6_4:47992328-47992347 | None:intergenic | 60.0% | |
| CGCCGTAGTGTGCAACCACC+GGG | - | chr6_4:47990379-47990398 | None:intergenic | 65.0% | |
| GCGCCGTAGTGTGCAACCAC+CGG | - | chr6_4:47990380-47990399 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 47988028 | 47992463 | 47988028 | ID=Msa0989910;Name=Msa0989910 |
| chr6_4 | mRNA | 47988028 | 47992463 | 47988028 | ID=Msa0989910-mRNA-1;Parent=Msa0989910;Name=Msa0989910-mRNA-1;_AED=0.45;_eAED=0.52;_QI=320|0.33|0.42|0.71|0.66|0.71|7|0|68 |
| chr6_4 | exon | 47988028 | 47988164 | 47988028 | ID=Msa0989910-mRNA-1:exon:10658;Parent=Msa0989910-mRNA-1 |
| chr6_4 | exon | 47989641 | 47989709 | 47989641 | ID=Msa0989910-mRNA-1:exon:10659;Parent=Msa0989910-mRNA-1 |
| chr6_4 | exon | 47989792 | 47989854 | 47989792 | ID=Msa0989910-mRNA-1:exon:10660;Parent=Msa0989910-mRNA-1 |
| chr6_4 | exon | 47991141 | 47991192 | 47991141 | ID=Msa0989910-mRNA-1:exon:10661;Parent=Msa0989910-mRNA-1 |
| chr6_4 | exon | 47991603 | 47991661 | 47991603 | ID=Msa0989910-mRNA-1:exon:10662;Parent=Msa0989910-mRNA-1 |
| chr6_4 | exon | 47992244 | 47992252 | 47992244 | ID=Msa0989910-mRNA-1:exon:10663;Parent=Msa0989910-mRNA-1 |
| chr6_4 | exon | 47992329 | 47992463 | 47992329 | ID=Msa0989910-mRNA-1:exon:10664;Parent=Msa0989910-mRNA-1 |
| chr6_4 | five_prime_UTR | 47988028 | 47988164 | 47988028 | ID=Msa0989910-mRNA-1:five_prime_utr;Parent=Msa0989910-mRNA-1 |
| chr6_4 | five_prime_UTR | 47989641 | 47989709 | 47989641 | ID=Msa0989910-mRNA-1:five_prime_utr;Parent=Msa0989910-mRNA-1 |
| chr6_4 | five_prime_UTR | 47989792 | 47989854 | 47989792 | ID=Msa0989910-mRNA-1:five_prime_utr;Parent=Msa0989910-mRNA-1 |
| chr6_4 | five_prime_UTR | 47991141 | 47991191 | 47991141 | ID=Msa0989910-mRNA-1:five_prime_utr;Parent=Msa0989910-mRNA-1 |
| chr6_4 | CDS | 47991192 | 47991192 | 47991192 | ID=Msa0989910-mRNA-1:cds;Parent=Msa0989910-mRNA-1 |
| chr6_4 | CDS | 47991603 | 47991661 | 47991603 | ID=Msa0989910-mRNA-1:cds;Parent=Msa0989910-mRNA-1 |
| chr6_4 | CDS | 47992244 | 47992252 | 47992244 | ID=Msa0989910-mRNA-1:cds;Parent=Msa0989910-mRNA-1 |
| chr6_4 | CDS | 47992329 | 47992463 | 47992329 | ID=Msa0989910-mRNA-1:cds;Parent=Msa0989910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
