Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990910 | XP_024626091.1 | 86.059 | 581 | 50 | 2 | 88 | 637 | 4 | 584 | 0.0 | 1032 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990910 | sp|Q6AVI0|RSLE2_ORYSJ | 30.330 | 666 | 393 | 18 | 67 | 673 | 64 | 717 | 7.71e-95 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990910 | A0A6P5XLY3 | 48.472 | 687 | 308 | 10 | 18 | 669 | 54 | 729 | 0.0 | 635 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0286170 | Msa0990910 | 0.805362 | 1.384754e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990910 | MtrunA17_Chr7g0263231 | 30.104 | 671 | 400 | 17 | 46 | 659 | 411 | 1069 | 6.02e-95 | 317 |
| Msa0990910 | MtrunA17_Chr2g0308821 | 29.925 | 665 | 393 | 16 | 59 | 659 | 4 | 659 | 2.17e-93 | 303 |
| Msa0990910 | MtrunA17_Chr7g0263261 | 30.325 | 676 | 392 | 17 | 46 | 659 | 352 | 1010 | 1.05e-89 | 301 |
| Msa0990910 | MtrunA17_Chr8g0359341 | 28.781 | 681 | 404 | 18 | 58 | 674 | 59 | 722 | 3.02e-88 | 291 |
| Msa0990910 | MtrunA17_Chr2g0333261 | 28.824 | 680 | 411 | 20 | 39 | 658 | 12 | 678 | 3.34e-83 | 277 |
| Msa0990910 | MtrunA17_Chr4g0003151 | 26.370 | 675 | 423 | 15 | 55 | 669 | 13 | 673 | 5.98e-79 | 265 |
| Msa0990910 | MtrunA17_Chr8g0383211 | 26.261 | 674 | 390 | 12 | 50 | 658 | 4 | 635 | 1.40e-78 | 264 |
| Msa0990910 | MtrunA17_Chr8g0354631 | 29.046 | 692 | 408 | 23 | 33 | 659 | 30 | 703 | 2.86e-78 | 265 |
| Msa0990910 | MtrunA17_Chr5g0402891 | 30.862 | 580 | 336 | 16 | 134 | 659 | 11 | 579 | 3.99e-77 | 259 |
| Msa0990910 | MtrunA17_Chr4g0052681 | 30.561 | 553 | 309 | 18 | 160 | 658 | 27 | 558 | 3.09e-68 | 234 |
| Msa0990910 | MtrunA17_Chr8g0383041 | 29.939 | 491 | 289 | 12 | 210 | 658 | 78 | 555 | 7.78e-66 | 228 |
| Msa0990910 | MtrunA17_Chr8g0383081 | 27.872 | 531 | 334 | 11 | 166 | 658 | 31 | 550 | 2.04e-63 | 221 |
| Msa0990910 | MtrunA17_Chr8g0383071 | 34.752 | 282 | 145 | 6 | 224 | 470 | 33 | 310 | 1.78e-48 | 172 |
| Msa0990910 | MtrunA17_Chr4g0052601 | 29.782 | 413 | 226 | 15 | 68 | 437 | 33 | 424 | 1.31e-43 | 162 |
| Msa0990910 | MtrunA17_Chr4g0062411 | 24.653 | 649 | 414 | 17 | 65 | 676 | 55 | 665 | 7.07e-39 | 153 |
| Msa0990910 | MtrunA17_Chr4g0053391 | 32.353 | 272 | 146 | 6 | 406 | 664 | 1 | 247 | 7.43e-37 | 139 |
| Msa0990910 | MtrunA17_Chr5g0408131 | 34.483 | 203 | 126 | 2 | 456 | 658 | 23 | 218 | 1.16e-30 | 120 |
| Msa0990910 | MtrunA17_Chr1g0192041 | 34.337 | 166 | 104 | 2 | 359 | 522 | 62 | 224 | 2.85e-30 | 119 |
| Msa0990910 | MtrunA17_Chr4g0052611 | 35.981 | 214 | 114 | 6 | 453 | 660 | 9 | 205 | 3.54e-30 | 119 |
| Msa0990910 | MtrunA17_Chr8g0383051 | 28.470 | 281 | 160 | 8 | 166 | 410 | 46 | 321 | 1.80e-25 | 107 |
| Msa0990910 | MtrunA17_Chr8g0383181 | 27.869 | 244 | 148 | 6 | 67 | 306 | 22 | 241 | 8.03e-23 | 99.8 |
| Msa0990910 | MtrunA17_Chr8g0383061 | 29.952 | 207 | 131 | 6 | 456 | 658 | 1 | 197 | 4.04e-18 | 84.3 |
| Msa0990910 | MtrunA17_Chr8g0390371 | 43.836 | 73 | 38 | 1 | 592 | 664 | 11 | 80 | 3.72e-13 | 65.5 |
| Msa0990910 | MtrunA17_Chr3g0108001 | 42.466 | 73 | 39 | 1 | 592 | 664 | 7 | 76 | 9.50e-13 | 65.1 |
| Msa0990910 | MtrunA17_Chr8g0383171 | 26.257 | 179 | 119 | 5 | 483 | 658 | 63 | 231 | 2.85e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990910 | AT3G42170.2 | 28.819 | 635 | 386 | 14 | 67 | 658 | 41 | 652 | 2.03e-88 | 290 |
| Msa0990910 | AT3G42170.1 | 28.661 | 635 | 387 | 14 | 67 | 658 | 63 | 674 | 2.16e-88 | 291 |
| Msa0990910 | AT1G18560.1 | 25.305 | 656 | 406 | 20 | 67 | 676 | 48 | 665 | 4.71e-34 | 139 |
Find 115 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATTTGAAGAGACATTTA+AGG | 0.168338 | 6_4:+53949288 | Msa0990910:CDS |
| CATAAATTATATAAAGTTAA+AGG | 0.209633 | 6_4:-53951926 | None:intergenic |
| TCTGTTACAAATATAATTTC+TGG | 0.238190 | 6_4:+53950299 | Msa0990910:CDS |
| TTTGCTTGACCACGGATTTA+TGG | 0.240127 | 6_4:+53949648 | Msa0990910:CDS |
| GAAAGAAAACTTCTCCAGTT+TGG | 0.243752 | 6_4:+53949168 | Msa0990910:CDS |
| TCTTCCTCAACAATACTAAA+TGG | 0.270419 | 6_4:-53949488 | None:intergenic |
| TCATCTCCGGGGTAAATTAA+AGG | 0.288608 | 6_4:-53950539 | None:intergenic |
| CTTCAAAGAAGTGAAGTTAA+AGG | 0.299486 | 6_4:+53949196 | Msa0990910:CDS |
| TATGTCCTTTGCTTCTGTTT+TGG | 0.314212 | 6_4:+53950478 | Msa0990910:CDS |
| ATGATTGATGAGAAGCTTTC+CGG | 0.328359 | 6_4:+53949380 | Msa0990910:CDS |
| GACCACCCTGTGTCTCTTGT+TGG | 0.332360 | 6_4:-53950695 | None:intergenic |
| AGGGGAGAGCAATTGGAGTT+TGG | 0.335928 | 6_4:+53951806 | Msa0990910:three_prime_UTR |
| TTTGTTCATGTTCCTCCTCC+TGG | 0.341927 | 6_4:+53949758 | Msa0990910:CDS |
| AAAGAAAACTTCTCCAGTTT+GGG | 0.345891 | 6_4:+53949169 | Msa0990910:CDS |
| CCATTTCATTGATGCTGATT+GGG | 0.352176 | 6_4:+53949712 | Msa0990910:CDS |
| AAATCAAAAGATAGAATATA+TGG | 0.355539 | 6_4:+53949679 | Msa0990910:CDS |
| GCCATTTCATTGATGCTGAT+TGG | 0.359357 | 6_4:+53949711 | Msa0990910:CDS |
| TCTGAAGCCACAGTAGATAT+TGG | 0.367386 | 6_4:-53950911 | None:intergenic |
| CTCTTCCAGATGAAGATGAT+TGG | 0.371453 | 6_4:+53950234 | Msa0990910:CDS |
| AAGCCCTCTTCTCCATCATT+TGG | 0.374987 | 6_4:-53949008 | None:intergenic |
| AGAGTATGCTGATATGCTTC+AGG | 0.386838 | 6_4:+53950613 | Msa0990910:CDS |
| TTGCTTGTCTAAGATGGTAT+TGG | 0.387214 | 6_4:+53949981 | Msa0990910:intron |
| CTTTAATTTGTGGTGGTGAT+TGG | 0.392374 | 6_4:+53951005 | Msa0990910:CDS |
| ATAGAATATATGGTGCTAAC+TGG | 0.395733 | 6_4:+53949689 | Msa0990910:CDS |
| CCCTTAAATGTCTCTTCAAA+TGG | 0.398206 | 6_4:-53949289 | None:intergenic |
| CTTTAAATGTCTCAAAGAAT+GGG | 0.401248 | 6_4:+53949808 | Msa0990910:CDS |
| TCTTTAAATGTCTCAAAGAA+TGG | 0.404654 | 6_4:+53949807 | Msa0990910:CDS |
| ATGAGTAAATATTAAGTTGA+AGG | 0.409203 | 6_4:+53951747 | Msa0990910:three_prime_UTR |
| GTCTTGAAGGGGAGAGCAAT+TGG | 0.409399 | 6_4:+53951799 | Msa0990910:three_prime_UTR |
| CCCAATCAGCATCAATGAAA+TGG | 0.414858 | 6_4:-53949712 | None:intergenic |
| TCTTTGAAGTGATCCCAAAC+TGG | 0.416027 | 6_4:-53949182 | None:intergenic |
| TAGTACGTCAATTGAATCAT+TGG | 0.416517 | 6_4:+53948974 | Msa0990910:CDS |
| CCATTTGAAGAGACATTTAA+GGG | 0.423793 | 6_4:+53949289 | Msa0990910:CDS |
| AGCAAGATTACGAACATTCT+CGG | 0.424413 | 6_4:+53950064 | Msa0990910:CDS |
| ACATTTAAGGGAAGTATGTC+AGG | 0.427916 | 6_4:+53949301 | Msa0990910:CDS |
| GACATATGACCATTATCGTT+AGG | 0.427964 | 6_4:-53950806 | None:intergenic |
| ACTTACAACCCTAACGATAA+TGG | 0.429827 | 6_4:+53950797 | Msa0990910:CDS |
| ACGAGAAGCCACTGCACATT+GGG | 0.435944 | 6_4:+53949448 | Msa0990910:CDS |
| TTTAGTATTGTTGAGGAAGA+AGG | 0.438752 | 6_4:+53949491 | Msa0990910:CDS |
| CCACCATTCCAAGGCACAAA+AGG | 0.447229 | 6_4:-53950828 | None:intergenic |
| TCTTCCAGATGAAGATGATT+GGG | 0.455559 | 6_4:+53950235 | Msa0990910:CDS |
| GGACCCTAGGATCAAAATGA+TGG | 0.456567 | 6_4:+53950499 | Msa0990910:CDS |
| ATATAGAGTATTATCTCATA+TGG | 0.462323 | 6_4:+53950868 | Msa0990910:CDS |
| CAACGATGCTGTTATTCAAA+AGG | 0.462531 | 6_4:+53949139 | Msa0990910:CDS |
| AATTATTCTGTTGTTGCAAG+TGG | 0.466913 | 6_4:+53949257 | Msa0990910:CDS |
| GGTGTTGCTTCATTTGTTAG+TGG | 0.469430 | 6_4:-53949080 | None:intergenic |
| TCTGGAAGAGTTGTATAACT+TGG | 0.473625 | 6_4:-53950221 | None:intergenic |
| GCAAGATATAAATTAGAAGT+TGG | 0.480417 | 6_4:-53950332 | None:intergenic |
| GCAACACCGGAAAATGAAGT+TGG | 0.483664 | 6_4:+53949095 | Msa0990910:CDS |
| ACATATGACCATTATCGTTA+GGG | 0.488004 | 6_4:-53950805 | None:intergenic |
| TTATTCCCTTGATGTTAAGT+AGG | 0.495461 | 6_4:+53951175 | Msa0990910:exon |
| TTCTTGATTGCCCTACTCGT+TGG | 0.497369 | 6_4:+53950126 | Msa0990910:CDS |
| AGACATGGCAAATGCGATGA+AGG | 0.505997 | 6_4:+53950418 | Msa0990910:CDS |
| ACCGTTGAAACTTTAATTTG+TGG | 0.507663 | 6_4:+53950995 | Msa0990910:CDS |
| AACGTACCTACTTAACATCA+AGG | 0.512693 | 6_4:-53951181 | None:intergenic |
| TGGATTCATAAGTAGTGGTC+CGG | 0.516119 | 6_4:-53949399 | None:intergenic |
| CTTCAGGAGCATAGAGAAGA+TGG | 0.516761 | 6_4:+53950629 | Msa0990910:CDS |
| AGTACGTCAATTGAATCATT+GGG | 0.521505 | 6_4:+53948975 | Msa0990910:CDS |
| TTCTAATTTATATCTTGCTG+AGG | 0.525402 | 6_4:+53950337 | Msa0990910:CDS |
| CAACACCGGAAAATGAAGTT+GGG | 0.527758 | 6_4:+53949096 | Msa0990910:CDS |
| GGGAATAATGTGATTTCTGT+CGG | 0.531032 | 6_4:-53951160 | None:intergenic |
| AAATAAAATATTTAGTGTGT+CGG | 0.531663 | 6_4:+53949838 | Msa0990910:CDS |
| GTCTATTATATGCATGCTTG+TGG | 0.533217 | 6_4:+53951948 | Msa0990910:three_prime_UTR |
| CATGTTCCTCCTCCTGGACG+TGG | 0.534347 | 6_4:+53949764 | Msa0990910:CDS |
| AACTGACAACATTTGATACA+TGG | 0.534684 | 6_4:-53950153 | None:intergenic |
| TAAAATATTTAGTGTGTCGG+TGG | 0.536956 | 6_4:+53949841 | Msa0990910:CDS |
| ACCACAAATTAAAGTTTCAA+CGG | 0.539404 | 6_4:-53950996 | None:intergenic |
| ATAGTTCAACAACTAAAGCT+TGG | 0.540231 | 6_4:+53950089 | Msa0990910:CDS |
| TCATGATCATATGTAGCACT+TGG | 0.542404 | 6_4:-53949419 | None:intergenic |
| GAAGCATATCAGCATACTCT+AGG | 0.542630 | 6_4:-53950610 | None:intergenic |
| AAATATTAAGTTGAAGGCTG+TGG | 0.544022 | 6_4:+53951753 | Msa0990910:three_prime_UTR |
| GGAGGTTCATCACCAAATGA+TGG | 0.548483 | 6_4:+53948996 | Msa0990910:CDS |
| ATTGGCTTCGAGTATTGCAT+GGG | 0.548627 | 6_4:+53951023 | Msa0990910:CDS |
| ACATGGAGTTCCAACGAGTA+GGG | 0.548628 | 6_4:-53950136 | None:intergenic |
| GATTGGCTTCGAGTATTGCA+TGG | 0.550233 | 6_4:+53951022 | Msa0990910:CDS |
| TGCTTTCCTTTAATTTACCC+CGG | 0.550404 | 6_4:+53950533 | Msa0990910:CDS |
| TCGATCTTGAAAACGTGGAA+AGG | 0.551102 | 6_4:-53950195 | None:intergenic |
| ATTCAACTTCCACCATTCCA+AGG | 0.562144 | 6_4:-53950837 | None:intergenic |
| AAAGAAGTGAAGTTAAAGGA+TGG | 0.565368 | 6_4:+53949200 | Msa0990910:CDS |
| GCAATATCAACACCACGTCC+AGG | 0.566147 | 6_4:-53949776 | None:intergenic |
| AACGAGAAGCCACTGCACAT+TGG | 0.572418 | 6_4:+53949447 | Msa0990910:CDS |
| TCACCAAATGATGGAGAAGA+GGG | 0.573695 | 6_4:+53949005 | Msa0990910:CDS |
| AAATAAGATTTGCTTGACCA+CGG | 0.577624 | 6_4:+53949640 | Msa0990910:CDS |
| TTATCGTTAGGGTTGTAAGT+TGG | 0.583804 | 6_4:-53950794 | None:intergenic |
| GTTCAACAACTAAAGCTTGG+TGG | 0.587329 | 6_4:+53950092 | Msa0990910:CDS |
| ATCACCAAATGATGGAGAAG+AGG | 0.588933 | 6_4:+53949004 | Msa0990910:CDS |
| TTTCATATGAGAAAATTAGT+CGG | 0.590543 | 6_4:+53949543 | Msa0990910:CDS |
| AGAAGTTAAAGTCAACTTTG+AGG | 0.591493 | 6_4:+53949612 | Msa0990910:CDS |
| GACCCTAGGATCAAAATGAT+GGG | 0.591637 | 6_4:+53950500 | Msa0990910:CDS |
| ACATCCATTTAGTATTGTTG+AGG | 0.596544 | 6_4:+53949484 | Msa0990910:CDS |
| GCACTTGGATTCATAAGTAG+TGG | 0.598264 | 6_4:-53949404 | None:intergenic |
| AGGGTCCAAAACAGAAGCAA+AGG | 0.599251 | 6_4:-53950483 | None:intergenic |
| TCAACACCACGTCCAGGAGG+AGG | 0.600852 | 6_4:-53949770 | None:intergenic |
| TTGTGACTTCCATAAATCCG+TGG | 0.602894 | 6_4:-53949657 | None:intergenic |
| TAGAAGAATGTAGAGAAGCT+CGG | 0.609825 | 6_4:-53950973 | None:intergenic |
| AAAAGTTTGCAAGCTGCTAG+AGG | 0.611700 | 6_4:+53950268 | Msa0990910:CDS |
| GTTGAAGGCTGTGGCAAATG+TGG | 0.614214 | 6_4:+53951762 | Msa0990910:three_prime_UTR |
| TTGGAGCCAACAAGAGACAC+AGG | 0.615353 | 6_4:+53950689 | Msa0990910:CDS |
| ACGTACCTACTTAACATCAA+GGG | 0.621396 | 6_4:-53951180 | None:intergenic |
| AGCTATTCCAATATCTACTG+TGG | 0.625240 | 6_4:+53950904 | Msa0990910:CDS |
| TTTAAATGTCTCAAAGAATG+GGG | 0.629030 | 6_4:+53949809 | Msa0990910:CDS |
| CATCATAACCCAATGTGCAG+TGG | 0.633413 | 6_4:-53949456 | None:intergenic |
| GTTGAAACTTTAATTTGTGG+TGG | 0.639553 | 6_4:+53950998 | Msa0990910:CDS |
| GGTGTTTCAAATCAAGCAAG+TGG | 0.641921 | 6_4:+53950358 | Msa0990910:CDS |
| ACTAACAAATGAAGCAACAC+CGG | 0.649014 | 6_4:+53949082 | Msa0990910:CDS |
| TGATCAAAATGAGCTGACAT+TGG | 0.652396 | 6_4:+53950670 | Msa0990910:CDS |
| ACGTCAATTGAATCATTGGG+AGG | 0.653810 | 6_4:+53948978 | Msa0990910:CDS |
| TACATGGAGTTCCAACGAGT+AGG | 0.657696 | 6_4:-53950137 | None:intergenic |
| TTGCTGTCTATGAATCTGAA+AGG | 0.661595 | 6_4:+53949588 | Msa0990910:CDS |
| GGTTCTCGATCTTGAAAACG+TGG | 0.664593 | 6_4:-53950200 | None:intergenic |
| GTCTAACTTCATGAAAGACA+TGG | 0.678953 | 6_4:+53950403 | Msa0990910:CDS |
| GAATGGTGGAAGTTGAATAG+CGG | 0.711081 | 6_4:+53950842 | Msa0990910:CDS |
| TGGAGCCAACAAGAGACACA+GGG | 0.732152 | 6_4:+53950690 | Msa0990910:CDS |
| ATATCAACACCACGTCCAGG+AGG | 0.742793 | 6_4:-53949773 | None:intergenic |
| AGCCAACAAGAGACACAGGG+TGG | 0.786904 | 6_4:+53950693 | Msa0990910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAATTATATAAAGTTAA+AGG | - | chr6_4:53951929-53951948 | None:intergenic | 10.0% |
| !! | AAATCAAAAGATAGAATATA+TGG | + | chr6_4:53949679-53949698 | Msa0990910:CDS | 15.0% |
| !! | AAATAAAATATTTAGTGTGT+CGG | + | chr6_4:53949838-53949857 | Msa0990910:CDS | 15.0% |
| !! | AAGAGAAAATATATTACTTT+AGG | - | chr6_4:53951061-53951080 | None:intergenic | 15.0% |
| !!! | CAATATTTTTTATTAATAGG+TGG | + | chr6_4:53951129-53951148 | Msa0990910:intron | 15.0% |
| !! | ATCAATAAACAACTTAATAA+AGG | - | chr6_4:53951627-53951646 | None:intergenic | 15.0% |
| !! | TTTCATATGAGAAAATTAGT+CGG | + | chr6_4:53949543-53949562 | Msa0990910:CDS | 20.0% |
| !! | TCTGTTACAAATATAATTTC+TGG | + | chr6_4:53950299-53950318 | Msa0990910:CDS | 20.0% |
| !! | AGCTAGAAAAAATATAGAAA+AGG | + | chr6_4:53950562-53950581 | Msa0990910:CDS | 20.0% |
| !!! | ATATAGAGTATTATCTCATA+TGG | + | chr6_4:53950868-53950887 | Msa0990910:CDS | 20.0% |
| !! | ATAAGAAAAAAAGATGCATT+GGG | + | chr6_4:53951306-53951325 | Msa0990910:intron | 20.0% |
| !!! | TAAAGATAGCATTTTTGTAT+TGG | + | chr6_4:53951431-53951450 | Msa0990910:intron | 20.0% |
| !!! | AAAGATAGCATTTTTGTATT+GGG | + | chr6_4:53951432-53951451 | Msa0990910:intron | 20.0% |
| !!! | ATGAGTAAATATTAAGTTGA+AGG | + | chr6_4:53951747-53951766 | Msa0990910:three_prime_UTR | 20.0% |
| ! | TAAAGGATGGAACAAAAAAA+TGG | + | chr6_4:53949213-53949232 | Msa0990910:CDS | 25.0% |
| ! | TCTTTAAATGTCTCAAAGAA+TGG | + | chr6_4:53949807-53949826 | Msa0990910:CDS | 25.0% |
| ! | CTTTAAATGTCTCAAAGAAT+GGG | + | chr6_4:53949808-53949827 | Msa0990910:CDS | 25.0% |
| ! | TTTAAATGTCTCAAAGAATG+GGG | + | chr6_4:53949809-53949828 | Msa0990910:CDS | 25.0% |
| ! | GCAAGATATAAATTAGAAGT+TGG | - | chr6_4:53950335-53950354 | None:intergenic | 25.0% |
| ! | TTCTAATTTATATCTTGCTG+AGG | + | chr6_4:53950337-53950356 | Msa0990910:CDS | 25.0% |
| ! | AGGAAAAATTTGACAAGTAT+TGG | + | chr6_4:53950438-53950457 | Msa0990910:CDS | 25.0% |
| ! | ACCACAAATTAAAGTTTCAA+CGG | - | chr6_4:53950999-53951018 | None:intergenic | 25.0% |
| ! | GATAAGAAAAAAAGATGCAT+TGG | + | chr6_4:53951305-53951324 | Msa0990910:intron | 25.0% |
| ! | CAACTATGATATGACATTTA+CGG | + | chr6_4:53951532-53951551 | Msa0990910:intron | 25.0% |
| ! | AACTATGATATGACATTTAC+GGG | + | chr6_4:53951533-53951552 | Msa0990910:intron | 25.0% |
| !! | GCTAAAAGCATAACAAAAAA+AGG | - | chr6_4:53951590-53951609 | None:intergenic | 25.0% |
| !! | ATTGATATGTAGCATTTTTC+AGG | + | chr6_4:53951641-53951660 | Msa0990910:intron | 25.0% |
| !! | TGAATACAATTTTGTCTTGA+AGG | + | chr6_4:53951786-53951805 | Msa0990910:three_prime_UTR | 25.0% |
| !! | GAATACAATTTTGTCTTGAA+GGG | + | chr6_4:53951787-53951806 | Msa0990910:three_prime_UTR | 25.0% |
| !! | AATACAATTTTGTCTTGAAG+GGG | + | chr6_4:53951788-53951807 | Msa0990910:three_prime_UTR | 25.0% |
| TAGTACGTCAATTGAATCAT+TGG | + | chr6_4:53948974-53948993 | Msa0990910:CDS | 30.0% | |
| AGTACGTCAATTGAATCATT+GGG | + | chr6_4:53948975-53948994 | Msa0990910:CDS | 30.0% | |
| AAAGAAAACTTCTCCAGTTT+GGG | + | chr6_4:53949169-53949188 | Msa0990910:CDS | 30.0% | |
| CTTCAAAGAAGTGAAGTTAA+AGG | + | chr6_4:53949196-53949215 | Msa0990910:CDS | 30.0% | |
| AAAGAAGTGAAGTTAAAGGA+TGG | + | chr6_4:53949200-53949219 | Msa0990910:CDS | 30.0% | |
| AATTATTCTGTTGTTGCAAG+TGG | + | chr6_4:53949257-53949276 | Msa0990910:CDS | 30.0% | |
| CCATTTGAAGAGACATTTAA+GGG | + | chr6_4:53949289-53949308 | Msa0990910:CDS | 30.0% | |
| ACATCCATTTAGTATTGTTG+AGG | + | chr6_4:53949484-53949503 | Msa0990910:CDS | 30.0% | |
| TCTTCCTCAACAATACTAAA+TGG | - | chr6_4:53949491-53949510 | None:intergenic | 30.0% | |
| TTTAGTATTGTTGAGGAAGA+AGG | + | chr6_4:53949491-53949510 | Msa0990910:CDS | 30.0% | |
| AGAAGTTAAAGTCAACTTTG+AGG | + | chr6_4:53949612-53949631 | Msa0990910:CDS | 30.0% | |
| ! | AAATAAGATTTGCTTGACCA+CGG | + | chr6_4:53949640-53949659 | Msa0990910:CDS | 30.0% |
| ! | ATAGAATATATGGTGCTAAC+TGG | + | chr6_4:53949689-53949708 | Msa0990910:CDS | 30.0% |
| TAAAATATTTAGTGTGTCGG+TGG | + | chr6_4:53949841-53949860 | Msa0990910:CDS | 30.0% | |
| AGCTAAAAGTTCTACTTTCA+AGG | + | chr6_4:53949895-53949914 | Msa0990910:intron | 30.0% | |
| ! | TTCCATCCAACACTAATTTT+TGG | - | chr6_4:53949923-53949942 | None:intergenic | 30.0% |
| GACAAGCAAGTTTAGTATAT+GGG | - | chr6_4:53949970-53949989 | None:intergenic | 30.0% | |
| AGACAAGCAAGTTTAGTATA+TGG | - | chr6_4:53949971-53949990 | None:intergenic | 30.0% | |
| ATAGTTCAACAACTAAAGCT+TGG | + | chr6_4:53950089-53950108 | Msa0990910:CDS | 30.0% | |
| AACTGACAACATTTGATACA+TGG | - | chr6_4:53950156-53950175 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCTAGCTTCATCTC+CGG | - | chr6_4:53950555-53950574 | None:intergenic | 30.0% |
| ACATATGACCATTATCGTTA+GGG | - | chr6_4:53950808-53950827 | None:intergenic | 30.0% | |
| !! | ACCGTTGAAACTTTAATTTG+TGG | + | chr6_4:53950995-53951014 | Msa0990910:CDS | 30.0% |
| !! | GTTGAAACTTTAATTTGTGG+TGG | + | chr6_4:53950998-53951017 | Msa0990910:CDS | 30.0% |
| ! | TTTTTATTAATAGGTGGAGC+AGG | + | chr6_4:53951135-53951154 | Msa0990910:intron | 30.0% |
| TTATTCCCTTGATGTTAAGT+AGG | + | chr6_4:53951175-53951194 | Msa0990910:exon | 30.0% | |
| AAATTGACAAGAACCTATTG+TGG | + | chr6_4:53951215-53951234 | Msa0990910:intron | 30.0% | |
| AGTGATATCAAATCCACAAT+AGG | - | chr6_4:53951231-53951250 | None:intergenic | 30.0% | |
| ! | AAGCTTTTGTGGATATATGT+TGG | + | chr6_4:53951408-53951427 | Msa0990910:intron | 30.0% |
| ! | CATGCTATATTTCTAATCAG+TGG | - | chr6_4:53951464-53951483 | None:intergenic | 30.0% |
| ATGTATGTTGAGTAAGCTTA+TGG | + | chr6_4:53951481-53951500 | Msa0990910:intron | 30.0% | |
| AAGCTTATGGAATCTTCATA+AGG | + | chr6_4:53951494-53951513 | Msa0990910:intron | 30.0% | |
| !! | AAATATTAAGTTGAAGGCTG+TGG | + | chr6_4:53951753-53951772 | Msa0990910:three_prime_UTR | 30.0% |
| ! | CTCAGCTAATTGAATTTTGT+TGG | + | chr6_4:53951856-53951875 | Msa0990910:three_prime_UTR | 30.0% |
| ACTAACAAATGAAGCAACAC+CGG | + | chr6_4:53949082-53949101 | Msa0990910:CDS | 35.0% | |
| ! | TCATTCCCAACTTCATTTTC+CGG | - | chr6_4:53949104-53949123 | None:intergenic | 35.0% |
| CAACGATGCTGTTATTCAAA+AGG | + | chr6_4:53949139-53949158 | Msa0990910:CDS | 35.0% | |
| GAAAGAAAACTTCTCCAGTT+TGG | + | chr6_4:53949168-53949187 | Msa0990910:CDS | 35.0% | |
| GCCATTTGAAGAGACATTTA+AGG | + | chr6_4:53949288-53949307 | Msa0990910:CDS | 35.0% | |
| CCCTTAAATGTCTCTTCAAA+TGG | - | chr6_4:53949292-53949311 | None:intergenic | 35.0% | |
| ! | ACATTTAAGGGAAGTATGTC+AGG | + | chr6_4:53949301-53949320 | Msa0990910:CDS | 35.0% |
| !! | TCATCAATCATGCTTTTTGC+TGG | - | chr6_4:53949371-53949390 | None:intergenic | 35.0% |
| ATGATTGATGAGAAGCTTTC+CGG | + | chr6_4:53949380-53949399 | Msa0990910:CDS | 35.0% | |
| TCATGATCATATGTAGCACT+TGG | - | chr6_4:53949422-53949441 | None:intergenic | 35.0% | |
| TTGCTGTCTATGAATCTGAA+AGG | + | chr6_4:53949588-53949607 | Msa0990910:CDS | 35.0% | |
| ! | CCATTTCATTGATGCTGATT+GGG | + | chr6_4:53949712-53949731 | Msa0990910:CDS | 35.0% |
| ! | AAGGCACCAAAAATTAGTGT+TGG | + | chr6_4:53949914-53949933 | Msa0990910:intron | 35.0% |
| ! | CACCAAAAATTAGTGTTGGA+TGG | + | chr6_4:53949918-53949937 | Msa0990910:intron | 35.0% |
| TTAGTATATGGGCACAACAA+CGG | - | chr6_4:53949959-53949978 | None:intergenic | 35.0% | |
| ! | CTAAACTTGCTTGTCTAAGA+TGG | + | chr6_4:53949975-53949994 | Msa0990910:intron | 35.0% |
| ! | TTGCTTGTCTAAGATGGTAT+TGG | + | chr6_4:53949981-53950000 | Msa0990910:intron | 35.0% |
| AGCAAGATTACGAACATTCT+CGG | + | chr6_4:53950064-53950083 | Msa0990910:CDS | 35.0% | |
| TCTGGAAGAGTTGTATAACT+TGG | - | chr6_4:53950224-53950243 | None:intergenic | 35.0% | |
| TCTTCCAGATGAAGATGATT+GGG | + | chr6_4:53950235-53950254 | Msa0990910:CDS | 35.0% | |
| ! | TTTTCCCAATCATCTTCATC+TGG | - | chr6_4:53950242-53950261 | None:intergenic | 35.0% |
| GTCTAACTTCATGAAAGACA+TGG | + | chr6_4:53950403-53950422 | Msa0990910:CDS | 35.0% | |
| ! | TATGTCCTTTGCTTCTGTTT+TGG | + | chr6_4:53950478-53950497 | Msa0990910:CDS | 35.0% |
| ! | TGCTTTCCTTTAATTTACCC+CGG | + | chr6_4:53950533-53950552 | Msa0990910:CDS | 35.0% |
| !!! | TTTTTTCTAGCTTCATCTCC+GGG | - | chr6_4:53950554-53950573 | None:intergenic | 35.0% |
| TGATCAAAATGAGCTGACAT+TGG | + | chr6_4:53950670-53950689 | Msa0990910:CDS | 35.0% | |
| ! | TGAACTTCAGATTTTACAGC+AGG | - | chr6_4:53950758-53950777 | None:intergenic | 35.0% |
| TTATCGTTAGGGTTGTAAGT+TGG | - | chr6_4:53950797-53950816 | None:intergenic | 35.0% | |
| ACTTACAACCCTAACGATAA+TGG | + | chr6_4:53950797-53950816 | Msa0990910:CDS | 35.0% | |
| GACATATGACCATTATCGTT+AGG | - | chr6_4:53950809-53950828 | None:intergenic | 35.0% | |
| AGCTATTCCAATATCTACTG+TGG | + | chr6_4:53950904-53950923 | Msa0990910:CDS | 35.0% | |
| TAGAAGAATGTAGAGAAGCT+CGG | - | chr6_4:53950976-53950995 | None:intergenic | 35.0% | |
| !! | CTTTAATTTGTGGTGGTGAT+TGG | + | chr6_4:53951005-53951024 | Msa0990910:CDS | 35.0% |
| GGGAATAATGTGATTTCTGT+CGG | - | chr6_4:53951163-53951182 | None:intergenic | 35.0% | |
| ACGTACCTACTTAACATCAA+GGG | - | chr6_4:53951183-53951202 | None:intergenic | 35.0% | |
| AACGTACCTACTTAACATCA+AGG | - | chr6_4:53951184-53951203 | None:intergenic | 35.0% | |
| TCTCAGAAGTTCTTATCCAT+AGG | - | chr6_4:53951287-53951306 | None:intergenic | 35.0% | |
| !!! | AAGGATTTTTAGCATAGTCC+AGG | + | chr6_4:53951563-53951582 | Msa0990910:intron | 35.0% |
| AGCATAACAAAAAAAGGTCC+TGG | - | chr6_4:53951584-53951603 | None:intergenic | 35.0% | |
| CTGAAAAACAAACGAGAAAG+TGG | - | chr6_4:53951675-53951694 | None:intergenic | 35.0% | |
| ACGTCAATTGAATCATTGGG+AGG | + | chr6_4:53948978-53948997 | Msa0990910:CDS | 40.0% | |
| ! | ATCACCAAATGATGGAGAAG+AGG | + | chr6_4:53949004-53949023 | Msa0990910:CDS | 40.0% |
| ! | TCACCAAATGATGGAGAAGA+GGG | + | chr6_4:53949005-53949024 | Msa0990910:CDS | 40.0% |
| !! | GGTGTTGCTTCATTTGTTAG+TGG | - | chr6_4:53949083-53949102 | None:intergenic | 40.0% |
| CAACACCGGAAAATGAAGTT+GGG | + | chr6_4:53949096-53949115 | Msa0990910:CDS | 40.0% | |
| !! | TCTTTGAAGTGATCCCAAAC+TGG | - | chr6_4:53949185-53949204 | None:intergenic | 40.0% |
| TGGATTCATAAGTAGTGGTC+CGG | - | chr6_4:53949402-53949421 | None:intergenic | 40.0% | |
| GCACTTGGATTCATAAGTAG+TGG | - | chr6_4:53949407-53949426 | None:intergenic | 40.0% | |
| TTTGCTTGACCACGGATTTA+TGG | + | chr6_4:53949648-53949667 | Msa0990910:CDS | 40.0% | |
| TTGTGACTTCCATAAATCCG+TGG | - | chr6_4:53949660-53949679 | None:intergenic | 40.0% | |
| GCCATTTCATTGATGCTGAT+TGG | + | chr6_4:53949711-53949730 | Msa0990910:CDS | 40.0% | |
| CCCAATCAGCATCAATGAAA+TGG | - | chr6_4:53949715-53949734 | None:intergenic | 40.0% | |
| ! | AAAAAGTGTGTGACAGTGTG+AGG | + | chr6_4:53950024-53950043 | Msa0990910:CDS | 40.0% |
| GTTCAACAACTAAAGCTTGG+TGG | + | chr6_4:53950092-53950111 | Msa0990910:CDS | 40.0% | |
| TCGATCTTGAAAACGTGGAA+AGG | - | chr6_4:53950198-53950217 | None:intergenic | 40.0% | |
| CTCTTCCAGATGAAGATGAT+TGG | + | chr6_4:53950234-53950253 | Msa0990910:CDS | 40.0% | |
| AAAAGTTTGCAAGCTGCTAG+AGG | + | chr6_4:53950268-53950287 | Msa0990910:CDS | 40.0% | |
| GGTGTTTCAAATCAAGCAAG+TGG | + | chr6_4:53950358-53950377 | Msa0990910:CDS | 40.0% | |
| GACCCTAGGATCAAAATGAT+GGG | + | chr6_4:53950500-53950519 | Msa0990910:CDS | 40.0% | |
| !! | CTCCCATCATTTTGATCCTA+GGG | - | chr6_4:53950505-53950524 | None:intergenic | 40.0% |
| !! | ACTCCCATCATTTTGATCCT+AGG | - | chr6_4:53950506-53950525 | None:intergenic | 40.0% |
| TCATCTCCGGGGTAAATTAA+AGG | - | chr6_4:53950542-53950561 | None:intergenic | 40.0% | |
| !!! | TTTTTCTAGCTTCATCTCCG+GGG | - | chr6_4:53950553-53950572 | None:intergenic | 40.0% |
| GAAGCATATCAGCATACTCT+AGG | - | chr6_4:53950613-53950632 | None:intergenic | 40.0% | |
| AGAGTATGCTGATATGCTTC+AGG | + | chr6_4:53950613-53950632 | Msa0990910:CDS | 40.0% | |
| ! | TCATATGTCCTTTTGTGCCT+TGG | + | chr6_4:53950820-53950839 | Msa0990910:CDS | 40.0% |
| ATTCAACTTCCACCATTCCA+AGG | - | chr6_4:53950840-53950859 | None:intergenic | 40.0% | |
| ! | GAATGGTGGAAGTTGAATAG+CGG | + | chr6_4:53950842-53950861 | Msa0990910:CDS | 40.0% |
| ! | TCTGAAGCCACAGTAGATAT+TGG | - | chr6_4:53950914-53950933 | None:intergenic | 40.0% |
| !!! | TCAGAGTCAACTTTTAGAGC+CGG | + | chr6_4:53950929-53950948 | Msa0990910:CDS | 40.0% |
| ! | ATTGGCTTCGAGTATTGCAT+GGG | + | chr6_4:53951023-53951042 | Msa0990910:CDS | 40.0% |
| TGCTCATTGTTCTTGACCTA+TGG | + | chr6_4:53951268-53951287 | Msa0990910:intron | 40.0% | |
| ! | CTGTGATGCATAAGCTTTTG+TGG | + | chr6_4:53951397-53951416 | Msa0990910:intron | 40.0% |
| GACATTTACGGGCATGTATA+AGG | + | chr6_4:53951544-53951563 | Msa0990910:intron | 40.0% | |
| GGAGGTTCATCACCAAATGA+TGG | + | chr6_4:53948996-53949015 | Msa0990910:CDS | 45.0% | |
| AAGCCCTCTTCTCCATCATT+TGG | - | chr6_4:53949011-53949030 | None:intergenic | 45.0% | |
| GCAACACCGGAAAATGAAGT+TGG | + | chr6_4:53949095-53949114 | Msa0990910:CDS | 45.0% | |
| CATCATAACCCAATGTGCAG+TGG | - | chr6_4:53949459-53949478 | None:intergenic | 45.0% | |
| TTTGTTCATGTTCCTCCTCC+TGG | + | chr6_4:53949758-53949777 | Msa0990910:CDS | 45.0% | |
| TTCTTGATTGCCCTACTCGT+TGG | + | chr6_4:53950126-53950145 | Msa0990910:CDS | 45.0% | |
| ACATGGAGTTCCAACGAGTA+GGG | - | chr6_4:53950139-53950158 | None:intergenic | 45.0% | |
| TACATGGAGTTCCAACGAGT+AGG | - | chr6_4:53950140-53950159 | None:intergenic | 45.0% | |
| GGTTCTCGATCTTGAAAACG+TGG | - | chr6_4:53950203-53950222 | None:intergenic | 45.0% | |
| AGACATGGCAAATGCGATGA+AGG | + | chr6_4:53950418-53950437 | Msa0990910:CDS | 45.0% | |
| AGGGTCCAAAACAGAAGCAA+AGG | - | chr6_4:53950486-53950505 | None:intergenic | 45.0% | |
| !! | TTGCTTCTGTTTTGGACCCT+AGG | + | chr6_4:53950486-53950505 | Msa0990910:CDS | 45.0% |
| GGACCCTAGGATCAAAATGA+TGG | + | chr6_4:53950499-53950518 | Msa0990910:CDS | 45.0% | |
| ! | CTTCAGGAGCATAGAGAAGA+TGG | + | chr6_4:53950629-53950648 | Msa0990910:CDS | 45.0% |
| ! | TGTCCTTTTGTGCCTTGGAA+TGG | + | chr6_4:53950825-53950844 | Msa0990910:CDS | 45.0% |
| !!! | CAGAGTCAACTTTTAGAGCC+GGG | + | chr6_4:53950930-53950949 | Msa0990910:CDS | 45.0% |
| !!! | AGAGTCAACTTTTAGAGCCG+GGG | + | chr6_4:53950931-53950950 | Msa0990910:CDS | 45.0% |
| !! | GATTGGCTTCGAGTATTGCA+TGG | + | chr6_4:53951022-53951041 | Msa0990910:CDS | 45.0% |
| !!! | TATCAATATTTTTTATTAAT+AGG | + | chr6_4:53951126-53951145 | Msa0990910:intron | 5.0% |
| AACGAGAAGCCACTGCACAT+TGG | + | chr6_4:53949447-53949466 | Msa0990910:CDS | 50.0% | |
| ACGAGAAGCCACTGCACATT+GGG | + | chr6_4:53949448-53949467 | Msa0990910:CDS | 50.0% | |
| ATATCAACACCACGTCCAGG+AGG | - | chr6_4:53949776-53949795 | None:intergenic | 50.0% | |
| GCAATATCAACACCACGTCC+AGG | - | chr6_4:53949779-53949798 | None:intergenic | 50.0% | |
| TTGGAGCCAACAAGAGACAC+AGG | + | chr6_4:53950689-53950708 | Msa0990910:CDS | 50.0% | |
| TGGAGCCAACAAGAGACACA+GGG | + | chr6_4:53950690-53950709 | Msa0990910:CDS | 50.0% | |
| CCACCATTCCAAGGCACAAA+AGG | - | chr6_4:53950831-53950850 | None:intergenic | 50.0% | |
| ! | CCTTTTGTGCCTTGGAATGG+TGG | + | chr6_4:53950828-53950847 | Msa0990910:CDS | 50.0% |
| !!! | GAGTCAACTTTTAGAGCCGG+GGG | + | chr6_4:53950932-53950951 | Msa0990910:CDS | 50.0% |
| !!! | AGTCAACTTTTAGAGCCGGG+GGG | + | chr6_4:53950933-53950952 | Msa0990910:CDS | 50.0% |
| TGAGTCAATAACTCTCCCCC+CGG | - | chr6_4:53950951-53950970 | None:intergenic | 50.0% | |
| GTTGAAGGCTGTGGCAAATG+TGG | + | chr6_4:53951762-53951781 | Msa0990910:three_prime_UTR | 50.0% | |
| GTCTTGAAGGGGAGAGCAAT+TGG | + | chr6_4:53951799-53951818 | Msa0990910:three_prime_UTR | 50.0% | |
| AGGGGAGAGCAATTGGAGTT+TGG | + | chr6_4:53951806-53951825 | Msa0990910:three_prime_UTR | 50.0% | |
| AGCCAACAAGAGACACAGGG+TGG | + | chr6_4:53950693-53950712 | Msa0990910:CDS | 55.0% | |
| GACCACCCTGTGTCTCTTGT+TGG | - | chr6_4:53950698-53950717 | None:intergenic | 55.0% | |
| CATGTTCCTCCTCCTGGACG+TGG | + | chr6_4:53949764-53949783 | Msa0990910:CDS | 60.0% | |
| TCAACACCACGTCCAGGAGG+AGG | - | chr6_4:53949773-53949792 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 53948966 | 53951967 | 53948966 | ID=Msa0990910;Name=Msa0990910 |
| chr6_4 | mRNA | 53948966 | 53951967 | 53948966 | ID=Msa0990910-mRNA-1;Parent=Msa0990910;Name=Msa0990910-mRNA-1;_AED=0.07;_eAED=0.20;_QI=0|0.66|0.5|1|0.66|0.5|4|283|681 |
| chr6_4 | exon | 53948966 | 53949902 | 53948966 | ID=Msa0990910-mRNA-1:exon:11121;Parent=Msa0990910-mRNA-1 |
| chr6_4 | exon | 53949994 | 53951063 | 53949994 | ID=Msa0990910-mRNA-1:exon:11122;Parent=Msa0990910-mRNA-1 |
| chr6_4 | exon | 53951148 | 53951196 | 53951148 | ID=Msa0990910-mRNA-1:exon:11123;Parent=Msa0990910-mRNA-1 |
| chr6_4 | exon | 53951695 | 53951967 | 53951695 | ID=Msa0990910-mRNA-1:exon:11124;Parent=Msa0990910-mRNA-1 |
| chr6_4 | CDS | 53948966 | 53949902 | 53948966 | ID=Msa0990910-mRNA-1:cds;Parent=Msa0990910-mRNA-1 |
| chr6_4 | CDS | 53949994 | 53951063 | 53949994 | ID=Msa0990910-mRNA-1:cds;Parent=Msa0990910-mRNA-1 |
| chr6_4 | CDS | 53951148 | 53951186 | 53951148 | ID=Msa0990910-mRNA-1:cds;Parent=Msa0990910-mRNA-1 |
| chr6_4 | three_prime_UTR | 53951187 | 53951196 | 53951187 | ID=Msa0990910-mRNA-1:three_prime_utr;Parent=Msa0990910-mRNA-1 |
| chr6_4 | three_prime_UTR | 53951695 | 53951967 | 53951695 | ID=Msa0990910-mRNA-1:three_prime_utr;Parent=Msa0990910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
