AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0991610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0991610 MtrunA17_Chr7g0274751 58.748 623 146 11 1 525 143 752 0.0 677
Msa0991610 MtrunA17_Chr4g0039801 61.524 538 97 7 1 430 320 855 0.0 626
Msa0991610 MtrunA17_Chr4g0039801 75.510 147 30 2 431 571 944 1090 1.65e-60 217
Msa0991610 MtrunA17_Chr5g0410641 54.529 541 130 9 1 430 299 834 0.0 560
Msa0991610 MtrunA17_Chr5g0410641 75.200 125 30 1 431 554 923 1047 2.43e-52 193
Msa0991610 MtrunA17_Chr1g0165411 50.094 533 155 9 1 430 292 816 2.89e-163 494
Msa0991610 MtrunA17_Chr1g0165411 72.441 127 34 1 432 557 906 1032 9.47e-50 186
Msa0991610 MtrunA17_Chr1g0165421 48.983 541 163 7 1 430 306 844 9.93e-156 475
Msa0991610 MtrunA17_Chr1g0165421 65.942 138 40 2 421 557 929 1060 1.44e-48 182
Msa0991610 MtrunA17_Chr2g0297351 56.579 304 97 6 152 430 444 737 2.83e-108 348
Msa0991610 MtrunA17_Chr2g0297351 53.448 174 52 1 1 145 206 379 1.67e-50 187
Msa0991610 MtrunA17_Chr2g0297351 65.625 128 43 1 431 557 826 953 2.05e-45 172
Msa0991610 MtrunA17_Chr7g0269741 56.721 305 106 4 152 430 578 882 1.30e-105 343
Msa0991610 MtrunA17_Chr7g0269741 65.541 148 44 2 431 571 971 1118 1.45e-52 194
Msa0991610 MtrunA17_Chr7g0269741 57.471 174 45 2 1 145 344 517 1.77e-51 191
Msa0991610 MtrunA17_Chr4g0073711 40.964 498 193 15 2 430 283 748 1.97e-102 333
Msa0991610 MtrunA17_Chr4g0073711 47.059 136 64 3 433 568 848 975 1.10e-31 131
Msa0991610 MtrunA17_Chr8g0352231 39.961 518 192 13 1 430 302 788 1.65e-101 331
Msa0991610 MtrunA17_Chr8g0352231 48.438 128 61 2 441 568 893 1015 1.13e-31 131
Msa0991610 MtrunA17_Chr8g0383701 40.078 514 192 16 2 428 321 805 9.24e-100 327
Msa0991610 MtrunA17_Chr8g0383701 46.154 130 64 2 439 568 910 1033 3.74e-31 129
Msa0991610 MtrunA17_Chr3g0137951 39.530 511 200 14 2 430 313 796 5.77e-99 324
Msa0991610 MtrunA17_Chr3g0137951 60.360 111 43 1 458 568 914 1023 1.34e-34 140
Msa0991610 MtrunA17_Chr8g0379241 38.845 502 204 11 2 430 228 699 8.06e-99 322
Msa0991610 MtrunA17_Chr8g0379241 42.254 142 72 3 431 568 791 926 2.64e-29 123
Msa0991610 MtrunA17_Chr1g0201731 39.641 502 210 15 2 428 323 806 5.38e-98 322
Msa0991610 MtrunA17_Chr1g0201731 45.652 138 64 3 439 571 911 1042 1.98e-25 111
Msa0991610 MtrunA17_Chr2g0284211 38.645 502 208 12 2 430 213 687 1.65e-97 318
Msa0991610 MtrunA17_Chr2g0284211 44.538 119 64 1 431 549 779 895 1.48e-28 121
Msa0991610 MtrunA17_Chr3g0088821 39.300 514 201 13 1 430 302 788 8.99e-97 318
Msa0991610 MtrunA17_Chr3g0088821 47.656 128 62 2 441 568 893 1015 5.79e-31 129
Msa0991610 MtrunA17_Chr1g0183381 37.854 494 212 12 1 430 154 616 8.06e-93 304
Msa0991610 MtrunA17_Chr1g0183381 43.704 135 73 2 431 565 707 838 4.29e-27 116
Msa0991610 MtrunA17_Chr7g0267731 40.392 510 197 16 1 430 214 696 1.18e-91 303
Msa0991610 MtrunA17_Chr7g0267731 35.829 187 105 4 400 572 747 932 3.53e-29 123
Msa0991610 MtrunA17_Chr2g0296991 36.636 535 202 15 1 430 253 755 2.16e-91 303
Msa0991610 MtrunA17_Chr2g0296991 43.478 138 76 1 431 568 846 981 4.65e-32 132
Msa0991610 MtrunA17_Chr3g0078671 37.137 517 205 11 1 428 269 754 9.20e-90 298
Msa0991610 MtrunA17_Chr3g0078671 39.552 134 77 2 439 568 853 986 1.35e-22 102
Msa0991610 MtrunA17_Chr8g0364641 37.219 489 213 13 1 430 236 689 2.47e-85 285
Msa0991610 MtrunA17_Chr8g0364641 41.880 117 62 3 439 554 793 904 2.59e-23 105
Msa0991610 MtrunA17_Chr3g0126641 53.023 215 65 5 246 430 1 209 1.38e-67 218
Msa0991610 MtrunA17_Chr2g0322371 29.053 475 227 13 1 428 49 460 5.91e-52 190
Msa0991610 MtrunA17_Chr2g0322351 30.369 461 247 14 1 430 51 468 2.33e-49 182
Msa0991610 MtrunA17_Chr2g0322361 28.452 478 231 13 1 428 54 470 3.13e-49 182
Msa0991610 MtrunA17_Chr3g0102551 33.143 350 148 9 3 288 66 393 7.61e-47 175
Msa0991610 MtrunA17_Chr4g0025201 27.615 478 222 12 1 424 51 458 1.81e-46 174
Msa0991610 MtrunA17_Chr2g0322341 32.680 306 156 7 1 274 53 340 2.31e-43 158
Msa0991610 MtrunA17_Chr3g0102541 31.476 359 147 12 1 288 53 383 1.41e-42 163
Msa0991610 MtrunA17_Chr3g0102531 31.014 345 166 10 1 288 53 382 1.64e-42 162
Msa0991610 MtrunA17_Chr3g0095791 27.254 477 233 13 1 438 48 449 8.61e-42 160
Msa0991610 MtrunA17_Chr4g0046401 27.331 472 212 13 6 425 66 458 1.02e-40 157
Msa0991610 MtrunA17_Chr2g0298581 25.934 482 234 10 1 438 48 450 6.28e-39 152
Msa0991610 MtrunA17_Chr1g0186381 30.746 335 158 8 6 288 67 379 3.38e-38 150
Msa0991610 MtrunA17_Chr2g0307191 25.875 514 244 13 1 463 48 475 1.72e-37 147
Msa0991610 MtrunA17_Chr3g0077511 25.732 478 240 13 1 438 48 450 3.55e-34 137
Msa0991610 MtrunA17_Chr0c03g0490021 40.909 110 64 1 460 569 1 109 1.37e-21 91.3
Msa0991610 MtrunA17_Chr8g0355061 60.345 58 22 1 460 517 1 57 4.08e-19 81.3
Msa0991610 MtrunA17_Chr3g0126651 54.667 75 22 2 136 210 9 71 2.39e-17 76.6
Msa0991610 MtrunA17_Chr2g0307241 37.963 108 55 3 10 117 57 152 1.29e-14 73.2
Msa0991610 MtrunA17_Chr7g0227271 58.824 51 21 0 16 66 103 153 1.69e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0991610 AT3G03050.1 57.328 539 116 8 1 430 325 858 0.0 578
Msa0991610 AT3G03050.1 72.109 147 35 2 431 571 947 1093 8.64e-58 210
Msa0991610 AT5G16910.1 58.396 536 112 9 1 430 328 858 0.0 577
Msa0991610 AT5G16910.1 70.748 147 37 2 431 571 947 1093 5.93e-57 207
Msa0991610 AT4G38190.1 47.201 536 158 8 1 430 303 819 1.64e-152 467
Msa0991610 AT4G38190.1 59.864 147 53 2 431 571 908 1054 2.59e-46 176
Msa0991610 AT2G33100.2 56.634 309 96 5 152 430 451 751 2.92e-112 359
Msa0991610 AT2G33100.2 52.874 174 53 1 1 145 214 387 8.64e-50 186
Msa0991610 AT2G33100.2 63.265 147 48 2 431 571 840 986 9.62e-49 183
Msa0991610 AT2G33100.1 56.634 309 96 5 152 430 451 751 2.92e-112 359
Msa0991610 AT2G33100.1 52.874 174 53 1 1 145 214 387 8.64e-50 186
Msa0991610 AT2G33100.1 63.265 147 48 2 431 571 840 986 9.62e-49 183
Msa0991610 AT1G02730.1 55.732 314 99 4 152 430 586 894 5.34e-104 340
Msa0991610 AT1G02730.1 64.189 148 46 2 431 571 983 1130 4.81e-52 193
Msa0991610 AT1G02730.1 56.322 174 47 2 1 145 349 522 1.55e-49 185
Msa0991610 AT2G25540.1 40.272 514 192 15 2 430 287 770 4.85e-103 335
Msa0991610 AT2G25540.1 65.306 98 33 1 458 555 888 984 3.72e-33 136
Msa0991610 AT1G32180.1 54.485 301 108 5 152 428 396 691 1.00e-102 333
Msa0991610 AT1G32180.1 56.322 174 47 1 1 145 153 326 6.82e-54 198
Msa0991610 AT1G32180.1 60.403 149 51 2 431 571 782 930 5.74e-49 183
Msa0991610 AT1G32180.2 54.485 301 108 5 152 428 396 691 1.00e-102 333
Msa0991610 AT1G32180.2 56.322 174 47 1 1 145 153 326 6.82e-54 198
Msa0991610 AT1G32180.2 60.403 149 51 2 431 571 782 930 5.74e-49 183
Msa0991610 AT4G32410.1 40.194 515 191 15 2 430 307 790 3.47e-102 333
Msa0991610 AT4G32410.1 53.125 128 55 2 441 568 895 1017 2.35e-34 139
Msa0991610 AT5G17420.1 40.081 494 204 13 2 430 270 736 9.50e-102 331
Msa0991610 AT5G17420.1 47.692 130 62 2 439 568 840 963 5.10e-32 132
Msa0991610 AT5G09870.1 39.114 519 190 14 1 428 295 778 1.25e-100 329
Msa0991610 AT5G09870.1 44.928 138 65 3 439 571 883 1014 2.77e-30 127
Msa0991610 AT5G05170.1 40.156 513 197 15 1 430 290 775 2.17e-100 328
Msa0991610 AT5G05170.1 50.781 128 58 2 441 568 880 1002 1.84e-32 134
Msa0991610 AT2G21770.1 39.766 513 193 14 2 428 314 796 3.91e-100 328
Msa0991610 AT2G21770.1 45.385 130 65 2 439 568 901 1024 1.85e-29 124
Msa0991610 AT5G64740.1 39.539 521 188 16 1 428 307 793 1.06e-99 327
Msa0991610 AT5G64740.1 46.154 130 64 2 439 568 898 1021 2.33e-30 127
Msa0991610 AT4G18780.1 38.900 509 200 12 2 430 216 693 7.91e-97 317
Msa0991610 AT4G18780.1 41.333 150 73 4 431 571 785 928 5.23e-29 123
Msa0991610 AT4G39350.1 38.953 516 194 15 2 428 309 792 2.77e-94 312
Msa0991610 AT4G39350.1 45.385 130 65 2 439 568 897 1020 5.47e-24 107
Msa0991610 AT5G44030.1 36.716 542 202 15 1 430 246 758 2.48e-91 303
Msa0991610 AT5G44030.1 47.656 128 63 1 441 568 863 986 1.01e-30 128
Msa0991610 AT5G44030.2 36.716 542 202 15 1 430 275 787 4.67e-91 303
Msa0991610 AT5G44030.2 47.656 128 63 1 441 568 892 1015 1.13e-30 128
Msa0991610 AT5G44030.3 36.162 495 180 14 48 430 9 479 7.04e-81 270
Msa0991610 AT5G44030.3 47.656 128 63 1 441 568 584 707 9.52e-31 128
Msa0991610 AT2G32620.2 28.931 477 240 14 1 433 53 474 4.24e-51 184
Msa0991610 AT2G32620.3 28.931 477 240 14 1 433 53 474 1.01e-50 185
Msa0991610 AT2G32540.1 27.704 527 275 13 1 480 53 520 3.98e-50 185
Msa0991610 AT2G32620.1 28.512 477 242 13 1 433 53 474 6.78e-50 184
Msa0991610 AT2G32530.1 28.542 480 238 13 1 433 53 474 1.97e-48 180
Msa0991610 AT2G32610.1 26.471 442 231 10 40 433 80 475 7.18e-45 170
Msa0991610 AT4G15320.3 27.708 480 241 13 1 433 53 473 7.93e-45 170
Msa0991610 AT4G15320.5 27.708 480 241 13 1 433 53 473 8.74e-45 170
Msa0991610 AT2G32620.4 28.741 421 214 11 56 433 1 378 1.45e-44 168
Msa0991610 AT1G55850.1 34.524 336 154 9 4 288 71 391 2.98e-43 165
Msa0991610 AT4G15290.1 27.083 480 244 13 1 433 53 473 7.72e-43 164
Msa0991610 AT4G15320.4 26.869 495 241 13 1 433 53 488 1.09e-42 164
Msa0991610 AT4G15320.2 25.475 526 240 14 1 433 53 519 1.71e-37 149
Msa0991610 AT4G24010.1 31.884 345 164 13 3 292 61 389 2.06e-36 145
Msa0991610 AT4G23990.1 30.655 336 168 10 6 288 83 406 7.65e-34 137
Msa0991610 AT4G24000.1 30.000 340 170 10 3 292 58 379 1.45e-33 136
Msa0991610 AT4G24000.2 38.462 130 56 3 185 292 60 187 1.18e-18 89.7
Msa0991610 AT4G23990.2 36.000 150 72 4 162 288 44 192 7.51e-18 87.4
Msa0991610 AT4G15320.1 33.835 133 77 1 1 133 53 174 3.90e-16 82.8

Find 137 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGAAGAGTTTCACTTTA+TGG 0.072307 6_4:+57133456 Msa0991610:CDS
CCCTTTCGCGAAAGGCTTAA+TGG 0.177844 6_4:+57134601 Msa0991610:CDS
TCCCTCTCCCGCAAGCAATT+TGG 0.190149 6_4:+57133621 Msa0991610:CDS
CCCTCTCCCGCAAGCAATTT+GGG 0.200263 6_4:+57133622 Msa0991610:CDS
TGTCTGTTGTTTGTGAAATA+TGG 0.253912 6_4:+57132044 Msa0991610:CDS
TTCTTGCACTTGAAATTAAA+TGG 0.256066 6_4:+57134229 Msa0991610:CDS
CATCTTGTTGCCGTGCTTCA+AGG 0.256642 6_4:+57134318 Msa0991610:CDS
CTACGATCATTCACTAAATC+AGG 0.273485 6_4:-57132478 None:intergenic
CCTGTAGGATTGTCAGGATT+TGG 0.273668 6_4:-57132160 None:intergenic
CCAAGTGATGAACCTCTTCT+TGG 0.277023 6_4:+57133031 Msa0991610:CDS
GTAAGGAATATTATTGATTC+TGG 0.279136 6_4:-57132533 None:intergenic
CCTTAAGTGTGTTCTCTTGT+TGG 0.282447 6_4:+57133790 Msa0991610:CDS
TTCACCTTGACTTCGAAATC+TGG 0.323434 6_4:+57134375 Msa0991610:CDS
AGATCGGCAAAATGATTTAC+TGG 0.325643 6_4:-57132109 None:intergenic
ATAACCAGTGAGCACTTCTT+TGG 0.328626 6_4:-57133868 None:intergenic
AAGAAGTGCTCACTGGTTAT+AGG 0.329805 6_4:+57133871 Msa0991610:CDS
CCTAGTGAAGAGTTCCATTC+TGG 0.343076 6_4:-57134538 None:intergenic
CTTTCTATAGTAGTTGCTTT+GGG 0.345268 6_4:+57133514 Msa0991610:CDS
AAATATGGTTTGCTTTCTCT+TGG 0.377407 6_4:+57132059 Msa0991610:CDS
ACTTTCTATAGTAGTTGCTT+TGG 0.390434 6_4:+57133513 Msa0991610:CDS
TTCTTGTTGTGGTCGTTACC+TGG 0.397900 6_4:-57133142 None:intergenic
GTTAGCATGCGAGCCCTTGA+TGG 0.399003 6_4:+57133396 Msa0991610:intron
CGAGCCCTTGATGGACTTCA+AGG 0.401056 6_4:+57133405 Msa0991610:CDS
CCTCAAACCTTTGAGGGAAC+TGG 0.401486 6_4:-57133324 None:intergenic
GGTGGAGAAATGAGCAGTTT+TGG 0.401803 6_4:+57134274 Msa0991610:CDS
TCAACACCGGTCAGGTCAAT+AGG 0.405480 6_4:-57133076 None:intergenic
GCACTTGAAATTAAATGGTC+AGG 0.406311 6_4:+57134234 Msa0991610:CDS
ACAAGAGATGGTTCTTTCTC+AGG 0.409534 6_4:-57132229 None:intergenic
TGAGTTCCCAAATTGCTTGC+GGG 0.415883 6_4:-57133628 None:intergenic
AATCACCCGTATTTAATGCT+TGG 0.436241 6_4:-57133575 None:intergenic
AAACACCATTCTGTCAATTC+TGG 0.444618 6_4:+57132258 Msa0991610:CDS
TTGGTTCTCTTCTGAGGTGT+TGG 0.445483 6_4:-57133556 None:intergenic
CCCAAATTGCTTGCGGGAGA+GGG 0.458205 6_4:-57133622 None:intergenic
ATTTAGTGAATGATCGTAGA+AGG 0.459761 6_4:+57132482 Msa0991610:CDS
ATCAATCCCTCAAACCTTTG+AGG 0.460787 6_4:-57133331 None:intergenic
CCCATTAAGCCTTTCGCGAA+AGG 0.462092 6_4:-57134602 None:intergenic
TAAATGGTCAGGAATTCATC+TGG 0.464380 6_4:+57134245 Msa0991610:CDS
CTGATCTTTATGTTGTCAAA+TGG 0.468924 6_4:+57134421 Msa0991610:CDS
CCAAGAAGAGGTTCATCACT+TGG 0.471138 6_4:-57133031 None:intergenic
ATGATTTACTGGACATAGCT+TGG 0.472627 6_4:-57132098 None:intergenic
TAATGCTTGGTTCTCTTCTG+AGG 0.476059 6_4:-57133562 None:intergenic
TCCCAAATTGCTTGCGGGAG+AGG 0.476282 6_4:-57133623 None:intergenic
CCATTAAGCCTTTCGCGAAA+GGG 0.476675 6_4:-57134601 None:intergenic
GGGCCAGTCTATGTAGAATC+TGG 0.477755 6_4:+57133426 Msa0991610:CDS
AGAGAACCAAGCATTAAATA+CGG 0.478767 6_4:+57133569 Msa0991610:CDS
TGAGATTTCAATGCCTGCTA+CGG 0.478771 6_4:-57134352 None:intergenic
TTGCCCCAGCTTTCTTGTTG+TGG 0.479160 6_4:-57133153 None:intergenic
TTCCTTACTCTCTCCGTGAC+AGG 0.479233 6_4:+57132548 Msa0991610:CDS
CATCTATACCCTTTCGCGAA+AGG 0.480610 6_4:+57134593 Msa0991610:CDS
AACGACCACAACAAGAAAGC+TGG 0.483864 6_4:+57133148 Msa0991610:CDS
GACCTGTCACGGAGAGAGTA+AGG 0.487247 6_4:-57132550 None:intergenic
GGTTTACTCAAAGCCGTAGC+AGG 0.493025 6_4:+57134339 Msa0991610:CDS
CTCTAGAAACATAAACAAGA+AGG 0.493620 6_4:-57133111 None:intergenic
GCATGAGTATAATGAGTTCA+AGG 0.494037 6_4:+57132510 Msa0991610:CDS
GCCTCGGCCATCATGTCAAA+TGG 0.499637 6_4:+57133193 Msa0991610:CDS
CAGGAATTCATCTGGAAGAC+TGG 0.503919 6_4:+57134253 Msa0991610:CDS
TGCCGATCTAAATGTTCTGA+AGG 0.507008 6_4:+57132123 Msa0991610:CDS
CCAACAAGAGAACACACTTA+AGG 0.507706 6_4:-57133790 None:intergenic
GACGGATATCAACACCGGTC+AGG 0.508068 6_4:-57133084 None:intergenic
GTTTCTAGAGAGAAACATCC+AGG 0.510828 6_4:+57133124 Msa0991610:CDS
GTATGCGGACAAGACTGAAT+GGG 0.513512 6_4:+57133812 Msa0991610:CDS
CATACCTTCCCTCATTGCCT+TGG 0.515377 6_4:-57133260 None:intergenic
TTGTGATCGGCGGTATCATA+AGG 0.517338 6_4:-57134449 None:intergenic
TCAATCCCTCAAACCTTTGA+GGG 0.520238 6_4:-57133330 None:intergenic
TCTAGAAACATAAACAAGAA+GGG 0.520713 6_4:-57133110 None:intergenic
GCTATGTCCAGTTCCCTCAA+AGG 0.526209 6_4:+57133317 Msa0991610:CDS
GGTATGCGGACAAGACTGAA+TGG 0.528289 6_4:+57133811 Msa0991610:CDS
GATCGGCAAGTGGCCTACCT+TGG 0.529590 6_4:-57133686 None:intergenic
CCTTGGAGTTGTATATATAG+TGG 0.530632 6_4:-57133243 None:intergenic
TTTACAATCATGATTGTGAT+CGG 0.530885 6_4:-57134462 None:intergenic
AAAAGCACCATTTGACATGA+TGG 0.531177 6_4:-57133200 None:intergenic
AAGCGTGTTGGATGGATCTA+CGG 0.533031 6_4:+57133837 Msa0991610:CDS
TTCCTTCAGAACATTTAGAT+CGG 0.534289 6_4:-57132125 None:intergenic
CTTGAAGCACGGCAACAAGA+TGG 0.534501 6_4:-57134317 None:intergenic
GGAAGGTATGTGCTTTATGA+TGG 0.535773 6_4:+57133273 Msa0991610:CDS
GAGAACCAAGCATTAAATAC+GGG 0.535986 6_4:+57133570 Msa0991610:CDS
TAAATTTATCTGACCTGTCA+CGG 0.537310 6_4:-57132561 None:intergenic
TTGAAGCACGGCAACAAGAT+GGG 0.542423 6_4:-57134316 None:intergenic
CAGTTCCACACCAACCAGAA+TGG 0.544070 6_4:+57134524 Msa0991610:CDS
CCAAATCCTGACAATCCTAC+AGG 0.546156 6_4:+57132160 Msa0991610:CDS
GAATGCATTGGTCAGAGCCT+CGG 0.547524 6_4:+57133177 Msa0991610:CDS
GATGCATCAATATGCTTGCT+AGG 0.547632 6_4:-57133753 None:intergenic
ACGACCACAACAAGAAAGCT+GGG 0.550852 6_4:+57133149 Msa0991610:CDS
CTGGCCCTTGAAGTCCATCA+AGG 0.551377 6_4:-57133410 None:intergenic
TTGAGTTCCCAAATTGCTTG+CGG 0.555464 6_4:-57133629 None:intergenic
GTGAAGAGTTCCATTCTGGT+TGG 0.556367 6_4:-57134534 None:intergenic
CTACCTTGGAACTCTGCCAC+TGG 0.557477 6_4:-57133672 None:intergenic
CATAAACAAGAAGGGGAAGA+CGG 0.558483 6_4:-57133102 None:intergenic
CAACCAGATTCTACATAGAC+TGG 0.560414 6_4:-57133429 None:intergenic
CTAGGTGTGATGAGAGCACC+AGG 0.561635 6_4:-57133735 None:intergenic
AGCTGGGGCAATGAATGCAT+TGG 0.564387 6_4:+57133165 Msa0991610:CDS
ATATATAGTGGTCGCAGTCA+AGG 0.570514 6_4:-57133231 None:intergenic
ATACAACTCCAAGGCAATGA+GGG 0.572491 6_4:+57133252 Msa0991610:CDS
AGTGCTCACTGGTTATAGGA+TGG 0.572764 6_4:+57133875 Msa0991610:CDS
CTAGAAACATAAACAAGAAG+GGG 0.575023 6_4:-57133109 None:intergenic
CCAGAATGGAACTCTTCACT+AGG 0.577391 6_4:+57134538 Msa0991610:CDS
AGCTGCCAGAATTGACAGAA+TGG 0.582836 6_4:-57132263 None:intergenic
ACCACCAGATTTCGAAGTCA+AGG 0.587968 6_4:-57134379 None:intergenic
GTGTTTGCTGTGACAAGAGA+TGG 0.591399 6_4:-57132241 None:intergenic
ATTACCAAAGAAGTGCTCAC+TGG 0.591838 6_4:+57133864 Msa0991610:CDS
ATTCCAGTGGCAGAGTTCCA+AGG 0.592139 6_4:+57133669 Msa0991610:CDS
TGCTATGTTTCTGACGACGC+GGG 0.593221 6_4:+57132310 Msa0991610:CDS
AACTCCAAGGCAATGAGGGA+AGG 0.596165 6_4:+57133256 Msa0991610:CDS
AATTTAATAGCAATAACAGT+AGG 0.597783 6_4:+57134483 Msa0991610:CDS
GAGTTCCATTCTGGTTGGTG+TGG 0.598699 6_4:-57134529 None:intergenic
TATACAACTCCAAGGCAATG+AGG 0.600261 6_4:+57133251 Msa0991610:CDS
ACCTTGACTTCGAAATCTGG+TGG 0.601426 6_4:+57134378 Msa0991610:CDS
TGGCCCTTGAAGTCCATCAA+GGG 0.606839 6_4:-57133409 None:intergenic
GAATTCATCTGGAAGACTGG+TGG 0.608712 6_4:+57134256 Msa0991610:CDS
CAGTGGCAGAGTTCCAAGGT+AGG 0.611581 6_4:+57133673 Msa0991610:CDS
TTTGAGTAAACCTTGAAGCA+CGG 0.611817 6_4:-57134328 None:intergenic
TCAGCGGCACTTCCAAGAAG+AGG 0.616482 6_4:-57133043 None:intergenic
TATGCGGACAAGACTGAATG+GGG 0.623255 6_4:+57133813 Msa0991610:CDS
TGTGTTCTCTTGTTGGTATG+CGG 0.625612 6_4:+57133797 Msa0991610:CDS
ACCATTTGACATGATGGCCG+AGG 0.627963 6_4:-57133194 None:intergenic
CCACTATATATACAACTCCA+AGG 0.635755 6_4:+57133243 Msa0991610:CDS
GAGCCCTTGATGGACTTCAA+GGG 0.641804 6_4:+57133406 Msa0991610:CDS
GCAGAAGGGTGATCGGCAAG+TGG 0.643383 6_4:-57133696 None:intergenic
AAGAAGAATGCATTGAGTCA+CGG 0.649926 6_4:-57134211 None:intergenic
AGCAGAGGCGGTCACCACCA+CGG 0.650421 6_4:-57133297 None:intergenic
AGAAGAGGTTCATCACTTGG+AGG 0.655749 6_4:-57133028 None:intergenic
ACTTATTGACTCGATTCCAG+TGG 0.657711 6_4:+57133656 Msa0991610:CDS
GGAACTGGACATAGCAGAGG+CGG 0.657815 6_4:-57133309 None:intergenic
ACAATCATGATTGTGATCGG+CGG 0.664744 6_4:-57134459 None:intergenic
GTGTGATGAGAGCACCAGGA+CGG 0.673384 6_4:-57133731 None:intergenic
AACTACTATAGAAAGTTGCG+CGG 0.673487 6_4:-57133506 None:intergenic
GAGGGAACTGGACATAGCAG+AGG 0.676027 6_4:-57133312 None:intergenic
GAAAATCCTATTGACCTGAC+CGG 0.678187 6_4:+57133070 Msa0991610:CDS
GGGAAGACGGATATCAACAC+CGG 0.679411 6_4:-57133089 None:intergenic
TGCTTTATGATGGACCGTGG+TGG 0.683848 6_4:+57133283 Msa0991610:CDS
ATGCTATGTTTCTGACGACG+CGG 0.686213 6_4:+57132309 Msa0991610:CDS
GAATGGAACTCTTCACTAGG+TGG 0.693689 6_4:+57134541 Msa0991610:CDS
CGACCACAACAAGAAAGCTG+GGG 0.697570 6_4:+57133150 Msa0991610:CDS
GAGTCACGGTAATAGCCAAG+AGG 0.715341 6_4:-57134197 None:intergenic
ACAGGAAAATCTGATCTGCG+AGG 0.717618 6_4:+57132178 Msa0991610:CDS
ATGTGCTTTATGATGGACCG+TGG 0.739026 6_4:+57133280 Msa0991610:CDS
ATGCGGACAAGACTGAATGG+GGG 0.745096 6_4:+57133814 Msa0991610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAAGAAATTTAATTCTT+GGG - chr6_4:57134044-57134063 None:intergenic 15.0%
!! ATAATAAAAAAAGAAGTGAA+AGG - chr6_4:57134096-57134115 None:intergenic 15.0%
!!! TTTTATAATATCGAAGATCA+TGG - chr6_4:57132765-57132784 None:intergenic 20.0%
!!! TTTTATAATATCGAAGATCA+TGG - chr6_4:57132765-57132784 None:intergenic 20.0%
!! TAGAAGTTAAGTTTATTGTT+GGG + chr6_4:57132947-57132966 Msa0991610:intron 20.0%
!! TTGAAGAAATTTAATTCTTG+GGG - chr6_4:57134043-57134062 None:intergenic 20.0%
!!! CTTTGAAGAAATTTAATTCT+TGG - chr6_4:57134045-57134064 None:intergenic 20.0%
!! CAAGAATTAAATTTCTTCAA+AGG + chr6_4:57134043-57134062 Msa0991610:intron 20.0%
!! AATTTAATAGCAATAACAGT+AGG + chr6_4:57134483-57134502 Msa0991610:CDS 20.0%
!!! TTTAAGTTGAAGTATGATTC+AGG - chr6_4:57132430-57132449 None:intergenic 25.0%
!!! GTAAGGAATATTATTGATTC+TGG - chr6_4:57132536-57132555 None:intergenic 25.0%
! AGATAAATTTAATGCAAGAG+AGG + chr6_4:57132573-57132592 Msa0991610:intron 25.0%
! ATAAAAAATTGCAGTCAATG+CGG + chr6_4:57132847-57132866 Msa0991610:intron 25.0%
! GTAGAAGTTAAGTTTATTGT+TGG + chr6_4:57132946-57132965 Msa0991610:intron 25.0%
! AGAAGTTAAGTTTATTGTTG+GGG + chr6_4:57132948-57132967 Msa0991610:intron 25.0%
!! AAATGATATTTTGCAGATGT+TGG + chr6_4:57133000-57133019 Msa0991610:CDS 25.0%
! TCTAGAAACATAAACAAGAA+GGG - chr6_4:57133113-57133132 None:intergenic 25.0%
! TTTAGAAGAGTTTCACTTTA+TGG + chr6_4:57133456-57133475 Msa0991610:CDS 25.0%
! TTCTTGCACTTGAAATTAAA+TGG + chr6_4:57134229-57134248 Msa0991610:CDS 25.0%
! TTTACAATCATGATTGTGAT+CGG - chr6_4:57134465-57134484 None:intergenic 25.0%
! TGTCTGTTGTTTGTGAAATA+TGG + chr6_4:57132044-57132063 Msa0991610:CDS 30.0%
!! AAATATGGTTTGCTTTCTCT+TGG + chr6_4:57132059-57132078 Msa0991610:CDS 30.0%
TTCCTTCAGAACATTTAGAT+CGG - chr6_4:57132128-57132147 None:intergenic 30.0%
!!! ACTTTTAACTTTTGAGGCAA+TGG + chr6_4:57132336-57132355 Msa0991610:CDS 30.0%
ATTTAGTGAATGATCGTAGA+AGG + chr6_4:57132482-57132501 Msa0991610:CDS 30.0%
TAAATTTATCTGACCTGTCA+CGG - chr6_4:57132564-57132583 None:intergenic 30.0%
TTTAATGCAAGAGAGGAAAT+AGG + chr6_4:57132580-57132599 Msa0991610:intron 30.0%
TTAATGCAAGAGAGGAAATA+GGG + chr6_4:57132581-57132600 Msa0991610:intron 30.0%
GTACTTGAATTATGACAGTA+TGG - chr6_4:57132716-57132735 None:intergenic 30.0%
TAAAAAATTGCAGTCAAACG+CGG + chr6_4:57132780-57132799 Msa0991610:intron 30.0%
! AATAGGATTTTCATCATCAG+CGG - chr6_4:57133062-57133081 None:intergenic 30.0%
CTAGAAACATAAACAAGAAG+GGG - chr6_4:57133112-57133131 None:intergenic 30.0%
! CTCTAGAAACATAAACAAGA+AGG - chr6_4:57133114-57133133 None:intergenic 30.0%
TGATTAGCATATCTATCAGA+GGG - chr6_4:57133357-57133376 None:intergenic 30.0%
TAGATATGCTAATCACAACA+CGG + chr6_4:57133362-57133381 Msa0991610:intron 30.0%
ACTTTCTATAGTAGTTGCTT+TGG + chr6_4:57133513-57133532 Msa0991610:CDS 30.0%
! CTTTCTATAGTAGTTGCTTT+GGG + chr6_4:57133514-57133533 Msa0991610:CDS 30.0%
AGAGAACCAAGCATTAAATA+CGG + chr6_4:57133569-57133588 Msa0991610:CDS 30.0%
! CTCTAGAAACAATCCAATTA+TGG + chr6_4:57134014-57134033 Msa0991610:intron 30.0%
CTGATCTTTATGTTGTCAAA+TGG + chr6_4:57134421-57134440 Msa0991610:CDS 30.0%
ATGATTTACTGGACATAGCT+TGG - chr6_4:57132101-57132120 None:intergenic 35.0%
AGATCGGCAAAATGATTTAC+TGG - chr6_4:57132112-57132131 None:intergenic 35.0%
AAACACCATTCTGTCAATTC+TGG + chr6_4:57132258-57132277 Msa0991610:CDS 35.0%
!! AACTCACATTTTAGCAAAGG+TGG - chr6_4:57132371-57132390 None:intergenic 35.0%
!! TGGAACTCACATTTTAGCAA+AGG - chr6_4:57132374-57132393 None:intergenic 35.0%
TAGGCTCTATATCATGTTTG+CGG - chr6_4:57132402-57132421 None:intergenic 35.0%
AAGTATGATTCAGGATTCCT+AGG - chr6_4:57132421-57132440 None:intergenic 35.0%
CTACGATCATTCACTAAATC+AGG - chr6_4:57132481-57132500 None:intergenic 35.0%
GCATGAGTATAATGAGTTCA+AGG + chr6_4:57132510-57132529 Msa0991610:CDS 35.0%
TAATGCAAGAGAGGAAATAG+GGG + chr6_4:57132582-57132601 Msa0991610:intron 35.0%
CCTGTTTAGCATGTATTAGA+GGG - chr6_4:57132924-57132943 None:intergenic 35.0%
ACCTGTTTAGCATGTATTAG+AGG - chr6_4:57132925-57132944 None:intergenic 35.0%
AAGTTTATTGTTGGGGAGAT+AGG + chr6_4:57132955-57132974 Msa0991610:intron 35.0%
! TGATATTTTGCAGATGTTGG+TGG + chr6_4:57133003-57133022 Msa0991610:CDS 35.0%
!! AAAAGCACCATTTGACATGA+TGG - chr6_4:57133203-57133222 None:intergenic 35.0%
CCTTGGAGTTGTATATATAG+TGG - chr6_4:57133246-57133265 None:intergenic 35.0%
CCACTATATATACAACTCCA+AGG + chr6_4:57133243-57133262 Msa0991610:CDS 35.0%
GTGATTAGCATATCTATCAG+AGG - chr6_4:57133358-57133377 None:intergenic 35.0%
AACTACTATAGAAAGTTGCG+CGG - chr6_4:57133509-57133528 None:intergenic 35.0%
GAGAACCAAGCATTAAATAC+GGG + chr6_4:57133570-57133589 Msa0991610:CDS 35.0%
AATCACCCGTATTTAATGCT+TGG - chr6_4:57133578-57133597 None:intergenic 35.0%
AAGGATAAATGCAGACATTG+AGG - chr6_4:57134077-57134096 None:intergenic 35.0%
AAGAAGAATGCATTGAGTCA+CGG - chr6_4:57134214-57134233 None:intergenic 35.0%
GCACTTGAAATTAAATGGTC+AGG + chr6_4:57134234-57134253 Msa0991610:CDS 35.0%
TAAATGGTCAGGAATTCATC+TGG + chr6_4:57134245-57134264 Msa0991610:CDS 35.0%
!!! AATGAGCAGTTTTGGTTGAT+TGG + chr6_4:57134282-57134301 Msa0991610:CDS 35.0%
TTTGAGTAAACCTTGAAGCA+CGG - chr6_4:57134331-57134350 None:intergenic 35.0%
! TGGTGTTTTCTTCAGCTTTT+GGG + chr6_4:57134561-57134580 Msa0991610:CDS 35.0%
TGCCGATCTAAATGTTCTGA+AGG + chr6_4:57132123-57132142 Msa0991610:CDS 40.0%
! GATTTTCCTGTAGGATTGTC+AGG - chr6_4:57132169-57132188 None:intergenic 40.0%
ACAAGAGATGGTTCTTTCTC+AGG - chr6_4:57132232-57132251 None:intergenic 40.0%
ATATCATGTTTGCGGCAGAA+TGG - chr6_4:57132394-57132413 None:intergenic 40.0%
GCAAACATGATATAGAGCCT+AGG + chr6_4:57132401-57132420 Msa0991610:intron 40.0%
!!! GTTGCTTTTGGAACCTTCAT+AGG - chr6_4:57132624-57132643 None:intergenic 40.0%
TGAAGGTTCCAAAAGCAACA+TGG + chr6_4:57132625-57132644 Msa0991610:intron 40.0%
TACTTCACCTGATCACTCTA+AGG + chr6_4:57132686-57132705 Msa0991610:intron 40.0%
ACTTCACCTGATCACTCTAA+GGG + chr6_4:57132687-57132706 Msa0991610:intron 40.0%
CCCTCTAATACATGCTAAAC+AGG + chr6_4:57132921-57132940 Msa0991610:intron 40.0%
GAAAATCCTATTGACCTGAC+CGG + chr6_4:57133070-57133089 Msa0991610:CDS 40.0%
CATAAACAAGAAGGGGAAGA+CGG - chr6_4:57133105-57133124 None:intergenic 40.0%
! GTTTCTAGAGAGAAACATCC+AGG + chr6_4:57133124-57133143 Msa0991610:CDS 40.0%
ATATATAGTGGTCGCAGTCA+AGG - chr6_4:57133234-57133253 None:intergenic 40.0%
TATACAACTCCAAGGCAATG+AGG + chr6_4:57133251-57133270 Msa0991610:CDS 40.0%
ATACAACTCCAAGGCAATGA+GGG + chr6_4:57133252-57133271 Msa0991610:CDS 40.0%
! GGAAGGTATGTGCTTTATGA+TGG + chr6_4:57133273-57133292 Msa0991610:CDS 40.0%
TCAATCCCTCAAACCTTTGA+GGG - chr6_4:57133333-57133352 None:intergenic 40.0%
ATCAATCCCTCAAACCTTTG+AGG - chr6_4:57133334-57133353 None:intergenic 40.0%
CAACCAGATTCTACATAGAC+TGG - chr6_4:57133432-57133451 None:intergenic 40.0%
! TAATGCTTGGTTCTCTTCTG+AGG - chr6_4:57133565-57133584 None:intergenic 40.0%
TTGAGTTCCCAAATTGCTTG+CGG - chr6_4:57133632-57133651 None:intergenic 40.0%
!! ACTTATTGACTCGATTCCAG+TGG + chr6_4:57133656-57133675 Msa0991610:CDS 40.0%
! ATTTTTCGCAGAAGGGTGAT+CGG - chr6_4:57133706-57133725 None:intergenic 40.0%
GATGCATCAATATGCTTGCT+AGG - chr6_4:57133756-57133775 None:intergenic 40.0%
CCAACAAGAGAACACACTTA+AGG - chr6_4:57133793-57133812 None:intergenic 40.0%
CCTTAAGTGTGTTCTCTTGT+TGG + chr6_4:57133790-57133809 Msa0991610:CDS 40.0%
TGTGTTCTCTTGTTGGTATG+CGG + chr6_4:57133797-57133816 Msa0991610:CDS 40.0%
!! ATTACCAAAGAAGTGCTCAC+TGG + chr6_4:57133864-57133883 Msa0991610:CDS 40.0%
ATAACCAGTGAGCACTTCTT+TGG - chr6_4:57133871-57133890 None:intergenic 40.0%
!! AAGAAGTGCTCACTGGTTAT+AGG + chr6_4:57133871-57133890 Msa0991610:CDS 40.0%
CTTCCATCAATCTCACTGAT+AGG + chr6_4:57133944-57133963 Msa0991610:intron 40.0%
GCTGCATCAAGTTCTTAGAT+GGG + chr6_4:57133966-57133985 Msa0991610:intron 40.0%
ATTCTTGGGGTAGCCATAAT+TGG - chr6_4:57134030-57134049 None:intergenic 40.0%
! CACTTTTCTTGCTTACCTCT+TGG + chr6_4:57134182-57134201 Msa0991610:CDS 40.0%
!!! AGCAGTTTTGGTTGATTGGA+GGG + chr6_4:57134286-57134305 Msa0991610:CDS 40.0%
TGAGATTTCAATGCCTGCTA+CGG - chr6_4:57134355-57134374 None:intergenic 40.0%
TTCACCTTGACTTCGAAATC+TGG + chr6_4:57134375-57134394 Msa0991610:CDS 40.0%
ACAATCATGATTGTGATCGG+CGG - chr6_4:57134462-57134481 None:intergenic 40.0%
! GTGGTGTTTTCTTCAGCTTT+TGG + chr6_4:57134560-57134579 Msa0991610:CDS 40.0%
CCTGTAGGATTGTCAGGATT+TGG - chr6_4:57132163-57132182 None:intergenic 45.0%
CCAAATCCTGACAATCCTAC+AGG + chr6_4:57132160-57132179 Msa0991610:CDS 45.0%
! CGCAGATCAGATTTTCCTGT+AGG - chr6_4:57132178-57132197 None:intergenic 45.0%
ACAGGAAAATCTGATCTGCG+AGG + chr6_4:57132178-57132197 Msa0991610:CDS 45.0%
!! GTGTTTGCTGTGACAAGAGA+TGG - chr6_4:57132244-57132263 None:intergenic 45.0%
AGCTGCCAGAATTGACAGAA+TGG - chr6_4:57132266-57132285 None:intergenic 45.0%
! ATGCTATGTTTCTGACGACG+CGG + chr6_4:57132309-57132328 Msa0991610:CDS 45.0%
!!! GGGCGCACTTTTAACTTTTG+AGG + chr6_4:57132330-57132349 Msa0991610:CDS 45.0%
TGAACCTGTTGAGCCTATGA+AGG + chr6_4:57132608-57132627 Msa0991610:intron 45.0%
GGTTCCAAAAGCAACATGGA+TGG + chr6_4:57132629-57132648 Msa0991610:intron 45.0%
!!! TCAGCCATCCATGTTGCTTT+TGG - chr6_4:57132636-57132655 None:intergenic 45.0%
AAAGCAACATGGATGGCTGA+TGG + chr6_4:57132636-57132655 Msa0991610:intron 45.0%
! GAAGTATTCAACCAAGTCCC+TGG - chr6_4:57132672-57132691 None:intergenic 45.0%
AATTGCAGTCAATGCGGCTT+TGG + chr6_4:57132853-57132872 Msa0991610:intron 45.0%
AGAAGAGGTTCATCACTTGG+AGG - chr6_4:57133031-57133050 None:intergenic 45.0%
CCAAGAAGAGGTTCATCACT+TGG - chr6_4:57133034-57133053 None:intergenic 45.0%
CCAAGTGATGAACCTCTTCT+TGG + chr6_4:57133031-57133050 Msa0991610:CDS 45.0%
! TTCTTGTTGTGGTCGTTACC+TGG - chr6_4:57133145-57133164 None:intergenic 45.0%
AACGACCACAACAAGAAAGC+TGG + chr6_4:57133148-57133167 Msa0991610:CDS 45.0%
ACGACCACAACAAGAAAGCT+GGG + chr6_4:57133149-57133168 Msa0991610:CDS 45.0%
!! ATGTGCTTTATGATGGACCG+TGG + chr6_4:57133280-57133299 Msa0991610:CDS 45.0%
CAGTTCCCTCAAAGGTTTGA+GGG + chr6_4:57133325-57133344 Msa0991610:intron 45.0%
! GGTTTTCTTTCGCAAGTGGA+GGG - chr6_4:57133488-57133507 None:intergenic 45.0%
!! TTGGTTCTCTTCTGAGGTGT+TGG - chr6_4:57133559-57133578 None:intergenic 45.0%
TGAGTTCCCAAATTGCTTGC+GGG - chr6_4:57133631-57133650 None:intergenic 45.0%
GATCACCCTTCTGCGAAAAA+TGG + chr6_4:57133705-57133724 Msa0991610:CDS 45.0%
GTATGCGGACAAGACTGAAT+GGG + chr6_4:57133812-57133831 Msa0991610:CDS 45.0%
TATGCGGACAAGACTGAATG+GGG + chr6_4:57133813-57133832 Msa0991610:CDS 45.0%
AAGCGTGTTGGATGGATCTA+CGG + chr6_4:57133837-57133856 Msa0991610:CDS 45.0%
! AGTGCTCACTGGTTATAGGA+TGG + chr6_4:57133875-57133894 Msa0991610:CDS 45.0%
CAGCCTATCAGTGAGATTGA+TGG - chr6_4:57133950-57133969 None:intergenic 45.0%
GGCTGCATCAAGTTCTTAGA+TGG + chr6_4:57133965-57133984 Msa0991610:intron 45.0%
AGTGAACTGTCCTGAGAAGA+GGG - chr6_4:57134145-57134164 None:intergenic 45.0%
CAGGAATTCATCTGGAAGAC+TGG + chr6_4:57134253-57134272 Msa0991610:CDS 45.0%
GAATTCATCTGGAAGACTGG+TGG + chr6_4:57134256-57134275 Msa0991610:CDS 45.0%
! GGTGGAGAAATGAGCAGTTT+TGG + chr6_4:57134274-57134293 Msa0991610:CDS 45.0%
!!! GAGCAGTTTTGGTTGATTGG+AGG + chr6_4:57134285-57134304 Msa0991610:CDS 45.0%
TTGAAGCACGGCAACAAGAT+GGG - chr6_4:57134319-57134338 None:intergenic 45.0%
ACCTTGACTTCGAAATCTGG+TGG + chr6_4:57134378-57134397 Msa0991610:CDS 45.0%
ACCACCAGATTTCGAAGTCA+AGG - chr6_4:57134382-57134401 None:intergenic 45.0%
TTGTGATCGGCGGTATCATA+AGG - chr6_4:57134452-57134471 None:intergenic 45.0%
GTGAAGAGTTCCATTCTGGT+TGG - chr6_4:57134537-57134556 None:intergenic 45.0%
CCTAGTGAAGAGTTCCATTC+TGG - chr6_4:57134541-57134560 None:intergenic 45.0%
CCAGAATGGAACTCTTCACT+AGG + chr6_4:57134538-57134557 Msa0991610:CDS 45.0%
GAATGGAACTCTTCACTAGG+TGG + chr6_4:57134541-57134560 Msa0991610:CDS 45.0%
CATCTATACCCTTTCGCGAA+AGG + chr6_4:57134593-57134612 Msa0991610:CDS 45.0%
! TGCTATGTTTCTGACGACGC+GGG + chr6_4:57132310-57132329 Msa0991610:CDS 50.0%
TTCCTTACTCTCTCCGTGAC+AGG + chr6_4:57132548-57132567 Msa0991610:CDS 50.0%
GGAACCTTCATAGGCTCAAC+AGG - chr6_4:57132615-57132634 None:intergenic 50.0%
! GGATGGCTGATGGATCTCAT+TGG + chr6_4:57132646-57132665 Msa0991610:intron 50.0%
! CTGATGGATCTCATTGGCCA+GGG + chr6_4:57132652-57132671 Msa0991610:intron 50.0%
! TCACCTGATCACTCTAAGGG+TGG + chr6_4:57132690-57132709 Msa0991610:intron 50.0%
!! GCAGTCAAACGCGGTTTTGT+AGG + chr6_4:57132789-57132808 Msa0991610:intron 50.0%
TCAACACCGGTCAGGTCAAT+AGG - chr6_4:57133079-57133098 None:intergenic 50.0%
GGGAAGACGGATATCAACAC+CGG - chr6_4:57133092-57133111 None:intergenic 50.0%
CGACCACAACAAGAAAGCTG+GGG + chr6_4:57133150-57133169 Msa0991610:CDS 50.0%
TTGCCCCAGCTTTCTTGTTG+TGG - chr6_4:57133156-57133175 None:intergenic 50.0%
AGCTGGGGCAATGAATGCAT+TGG + chr6_4:57133165-57133184 Msa0991610:CDS 50.0%
! GAATGCATTGGTCAGAGCCT+CGG + chr6_4:57133177-57133196 Msa0991610:CDS 50.0%
ACCATTTGACATGATGGCCG+AGG - chr6_4:57133197-57133216 None:intergenic 50.0%
AACTCCAAGGCAATGAGGGA+AGG + chr6_4:57133256-57133275 Msa0991610:CDS 50.0%
CATACCTTCCCTCATTGCCT+TGG - chr6_4:57133263-57133282 None:intergenic 50.0%
!! TGCTTTATGATGGACCGTGG+TGG + chr6_4:57133283-57133302 Msa0991610:CDS 50.0%
GCTATGTCCAGTTCCCTCAA+AGG + chr6_4:57133317-57133336 Msa0991610:CDS 50.0%
! CCTCAAACCTTTGAGGGAAC+TGG - chr6_4:57133327-57133346 None:intergenic 50.0%
CCAGTTCCCTCAAAGGTTTG+AGG + chr6_4:57133324-57133343 Msa0991610:intron 50.0%
!! GAGCCCTTGATGGACTTCAA+GGG + chr6_4:57133406-57133425 Msa0991610:CDS 50.0%
TGGCCCTTGAAGTCCATCAA+GGG - chr6_4:57133412-57133431 None:intergenic 50.0%
GGGCCAGTCTATGTAGAATC+TGG + chr6_4:57133426-57133445 Msa0991610:CDS 50.0%
! CGGTTTTCTTTCGCAAGTGG+AGG - chr6_4:57133489-57133508 None:intergenic 50.0%
ATTCCAGTGGCAGAGTTCCA+AGG + chr6_4:57133669-57133688 Msa0991610:CDS 50.0%
!! GGCGACCATTTTTCGCAGAA+GGG - chr6_4:57133713-57133732 None:intergenic 50.0%
GGTATGCGGACAAGACTGAA+TGG + chr6_4:57133811-57133830 Msa0991610:CDS 50.0%
ATGCGGACAAGACTGAATGG+GGG + chr6_4:57133814-57133833 Msa0991610:CDS 50.0%
ACATAACACGATGCCTTCCG+CGG + chr6_4:57133916-57133935 Msa0991610:intron 50.0%
GATTGATGGAAGCAGTTCCG+CGG - chr6_4:57133936-57133955 None:intergenic 50.0%
CAGTGAACTGTCCTGAGAAG+AGG - chr6_4:57134146-57134165 None:intergenic 50.0%
GAGTCACGGTAATAGCCAAG+AGG - chr6_4:57134200-57134219 None:intergenic 50.0%
CTTGAAGCACGGCAACAAGA+TGG - chr6_4:57134320-57134339 None:intergenic 50.0%
CATCTTGTTGCCGTGCTTCA+AGG + chr6_4:57134318-57134337 Msa0991610:CDS 50.0%
GGTTTACTCAAAGCCGTAGC+AGG + chr6_4:57134339-57134358 Msa0991610:CDS 50.0%
CAGTTCCACACCAACCAGAA+TGG + chr6_4:57134524-57134543 Msa0991610:CDS 50.0%
! GAGTTCCATTCTGGTTGGTG+TGG - chr6_4:57134532-57134551 None:intergenic 50.0%
GACCTGTCACGGAGAGAGTA+AGG - chr6_4:57132553-57132572 None:intergenic 55.0%
! GCTGATGGATCTCATTGGCC+AGG + chr6_4:57132651-57132670 Msa0991610:intron 55.0%
GATCTCATTGGCCAGGGACT+TGG + chr6_4:57132658-57132677 Msa0991610:intron 55.0%
TGGCCACCCTTAGAGTGATC+AGG - chr6_4:57132696-57132715 None:intergenic 55.0%
TCAGCGGCACTTCCAAGAAG+AGG - chr6_4:57133046-57133065 None:intergenic 55.0%
GACGGATATCAACACCGGTC+AGG - chr6_4:57133087-57133106 None:intergenic 55.0%
GCCTCGGCCATCATGTCAAA+TGG + chr6_4:57133193-57133212 Msa0991610:CDS 55.0%
GGAACTGGACATAGCAGAGG+CGG - chr6_4:57133312-57133331 None:intergenic 55.0%
GAGGGAACTGGACATAGCAG+AGG - chr6_4:57133315-57133334 None:intergenic 55.0%
GTTAGCATGCGAGCCCTTGA+TGG + chr6_4:57133396-57133415 Msa0991610:intron 55.0%
!! CGAGCCCTTGATGGACTTCA+AGG + chr6_4:57133405-57133424 Msa0991610:CDS 55.0%
CTGGCCCTTGAAGTCCATCA+AGG - chr6_4:57133413-57133432 None:intergenic 55.0%
! GCGCGGTTTTCTTTCGCAAG+TGG - chr6_4:57133492-57133511 None:intergenic 55.0%
TCCCTCTCCCGCAAGCAATT+TGG + chr6_4:57133621-57133640 Msa0991610:CDS 55.0%
CCCAAATTGCTTGCGGGAGA+GGG - chr6_4:57133625-57133644 None:intergenic 55.0%
CCCTCTCCCGCAAGCAATTT+GGG + chr6_4:57133622-57133641 Msa0991610:CDS 55.0%
TCCCAAATTGCTTGCGGGAG+AGG - chr6_4:57133626-57133645 None:intergenic 55.0%
CTACCTTGGAACTCTGCCAC+TGG - chr6_4:57133675-57133694 None:intergenic 55.0%
CAGTGGCAGAGTTCCAAGGT+AGG + chr6_4:57133673-57133692 Msa0991610:CDS 55.0%
!! CGGCGACCATTTTTCGCAGA+AGG - chr6_4:57133714-57133733 None:intergenic 55.0%
!! GTGTGATGAGAGCACCAGGA+CGG - chr6_4:57133734-57133753 None:intergenic 55.0%
!! CTAGGTGTGATGAGAGCACC+AGG - chr6_4:57133738-57133757 None:intergenic 55.0%
! ACTGAATGGGGGAAGCGTGT+TGG + chr6_4:57133825-57133844 Msa0991610:CDS 55.0%
! AATGGGGGAAGCGTGTTGGA+TGG + chr6_4:57133829-57133848 Msa0991610:CDS 55.0%
CTGTCCTGAGAAGAGGGAGA+GGG - chr6_4:57134139-57134158 None:intergenic 55.0%
ACTGTCCTGAGAAGAGGGAG+AGG - chr6_4:57134140-57134159 None:intergenic 55.0%
GATCGGCAAGTGGCCTACCT+TGG - chr6_4:57133689-57133708 None:intergenic 60.0%
GCAGAAGGGTGATCGGCAAG+TGG - chr6_4:57133699-57133718 None:intergenic 60.0%
GCGAAAAATGGTCGCCGTCC+TGG + chr6_4:57133717-57133736 Msa0991610:CDS 60.0%
GATGGAAGCAGTTCCGCGGA+AGG - chr6_4:57133932-57133951 None:intergenic 60.0%
AGCAGAGGCGGTCACCACCA+CGG - chr6_4:57133300-57133319 None:intergenic 65.0%
CCTGAGAAGAGGGAGAGGGC+AGG - chr6_4:57134135-57134154 None:intergenic 65.0%
CCTGCCCTCTCCCTCTTCTC+AGG + chr6_4:57134132-57134151 Msa0991610:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 57132043 57134620 57132043 ID=Msa0991610;Name=Msa0991610
chr6_4 mRNA 57132043 57134620 57132043 ID=Msa0991610-mRNA-1;Parent=Msa0991610;Name=Msa0991610-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0.75|0.8|5|0|584
chr6_4 exon 57132043 57132383 57132043 ID=Msa0991610-mRNA-1:exon:11415;Parent=Msa0991610-mRNA-1
chr6_4 exon 57132471 57132569 57132471 ID=Msa0991610-mRNA-1:exon:11416;Parent=Msa0991610-mRNA-1
chr6_4 exon 57132994 57133338 57132994 ID=Msa0991610-mRNA-1:exon:11417;Parent=Msa0991610-mRNA-1
chr6_4 exon 57133401 57133903 57133401 ID=Msa0991610-mRNA-1:exon:11418;Parent=Msa0991610-mRNA-1
chr6_4 exon 57134154 57134620 57134154 ID=Msa0991610-mRNA-1:exon:11419;Parent=Msa0991610-mRNA-1
chr6_4 CDS 57132043 57132383 57132043 ID=Msa0991610-mRNA-1:cds;Parent=Msa0991610-mRNA-1
chr6_4 CDS 57132471 57132569 57132471 ID=Msa0991610-mRNA-1:cds;Parent=Msa0991610-mRNA-1
chr6_4 CDS 57132994 57133338 57132994 ID=Msa0991610-mRNA-1:cds;Parent=Msa0991610-mRNA-1
chr6_4 CDS 57133401 57133903 57133401 ID=Msa0991610-mRNA-1:cds;Parent=Msa0991610-mRNA-1
chr6_4 CDS 57134154 57134620 57134154 ID=Msa0991610-mRNA-1:cds;Parent=Msa0991610-mRNA-1
Gene Sequence

>Msa0991610

ATGTCTGTTGTTTGTGAAATATGGTTTGCTTTCTCTTGGCTTCTTGATCAAGTTACCAAGCTATGTCCAGTAAATCATTTTGCCGATCTAAATGTTCTGAAGGAAAAATTTGAATCACCAAATCCTGACAATCCTACAGGAAAATCTGATCTGCGAGGCATAGAAGTCTTTGTCTCAACTGTTGATCCTGAGAAAGAACCATCTCTTGTCACAGCAAACACCATTCTGTCAATTCTGGCAGCTAATTATGCAGTTGAGAAGCTTTCATGCTATGTTTCTGACGACGCGGGCGCACTTTTAACTTTTGAGGCAATGGCTCAAGCTGCCACCTTTGCTAAAATAGTGAAACCTGATTTAGTGAATGATCGTAGAAGGCTGAAGCATGAGTATAATGAGTTCAAGGCCAGAATCAATAATATTCCTTACTCTCTCCGTGACAGTTTGATAAATGATATTTTGCAGATGTTGGTGGAACCTCCAAGTGATGAACCTCTTCTTGGAAGTGCCGCTGATGATGAAAATCCTATTGACCTGACCGGTGTTGATATCCGTCTTCCCCTTCTTGTTTATGTTTCTAGAGAGAAACATCCAGGTAACGACCACAACAAGAAAGCTGGGGCAATGAATGCATTGGTCAGAGCCTCGGCCATCATGTCAAATGGTGCTTTTATACTCAACCTTGACTGCGACCACTATATATACAACTCCAAGGCAATGAGGGAAGGTATGTGCTTTATGATGGACCGTGGTGGTGACCGCCTCTGCTATGTCCAGTTCCCTCAAAGCATGCGAGCCCTTGATGGACTTCAAGGGCCAGTCTATGTAGAATCTGGTTGTCTGTTTAGAAGAGTTTCACTTTATGGTTTTGACCCTCCACTTGCGAAAGAAAACCGCGCAACTTTCTATAGTAGTTGCTTTGGGTGTAATAAGAAGAAATTTGCCAACACCTCAGAAGAGAACCAAGCATTAAATACGGGTGATTCTGATGATGAAGAGATGAATCTTTCCCTCTCCCGCAAGCAATTTGGGAACTCAACTGTACTTATTGACTCGATTCCAGTGGCAGAGTTCCAAGGTAGGCCACTTGCCGATCACCCTTCTGCGAAAAATGGTCGCCGTCCTGGTGCTCTCATCACACCTAGCAAGCATATTGATGCATCAACATTGAATGAAGCCTTAAGTGTGTTCTCTTGTTGGTATGCGGACAAGACTGAATGGGGGAAGCGTGTTGGATGGATCTACGGATCAATTACCAAAGAAGTGCTCACTGGTTATAGGATGGAAATCAGACAGTTCACTGTTCAAACACTCTATCTCACTTTTCTTGCTTACCTCTTGGCTATTACCGTGACTCAATGCATTCTTCTTGCACTTGAAATTAAATGGTCAGGAATTCATCTGGAAGACTGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACTAGTGCCCATCTTGTTGCCGTGCTTCAAGGTTTACTCAAAGCCGTAGCAGGCATTGAAATCTCATTCACCTTGACTTCGAAATCTGGTGGTGATGTTGACGATGATTTTGCTGATCTTTATGTTGTCAAATGGTCATACCTTATGATACCGCCGATCACAATCATGATTGTAAATTTAATAGCAATAACAGTAGGAGTTAGCAGAACTATATACAGTTCCACACCAACCAGAATGGAACTCTTCACTAGGTGGTGTTTTCTTCAGCTTTTGGGTACTGAATTCATCTATACCCTTTCGCGAAAGGCTTAA
Protein sequence

>Msa0991610

MSVVCEIWFAFSWLLDQVTKLCPVNHFADLNVLKEKFESPNPDNPTGKSDLRGIEVFVSTVDPEKEPSLVTANTILSILAANYAVEKLSCYVSDDAGALLTFEAMAQAATFAKIVKPDLVNDRRRLKHEYNEFKARINNIPYSLRDSLINDILQMLVEPPSDEPLLGSAADDENPIDLTGVDIRLPLLVYVSREKHPGNDHNKKAGAMNALVRASAIMSNGAFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQSMRALDGLQGPVYVESGCLFRRVSLYGFDPPLAKENRATFYSSCFGCNKKKFANTSEENQALNTGDSDDEEMNLSLSRKQFGNSTVLIDSIPVAEFQGRPLADHPSAKNGRRPGALITPSKHIDASTLNEALSVFSCWYADKTEWGKRVGWIYGSITKEVLTGYRMEIRQFTVQTLYLTFLAYLLAITVTQCILLALEIKWSGIHLEDWWRNEQFWLIGGTSAHLVAVLQGLLKAVAGIEISFTLTSKSGGDVDDDFADLYVVKWSYLMIPPITIMIVNLIAITVGVSRTIYSSTPTRMELFTRWCFLQLLGTEFIYTLSRKA*