AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0569230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569230 MtrunA17_Chr8g0384321 96.070 229 9 0 1 229 1 229 9.64e-156 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 52 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTATTACCTGCCTATT+GGG 0.274140 4_1:+71095948 Msa0569230:three_prime_UTR
TTCATTCCATTTCCTGCGTT+TGG 0.288245 4_1:+71093033 Msa0569230:CDS
TATGAAAACTTTCTCAGGTT+TGG 0.290971 4_1:+71095736 Msa0569230:three_prime_UTR
GACGTTTCAATATCACTAAA+AGG 0.300895 4_1:+71095378 Msa0569230:CDS
TCTCTTTCAGAACGAGTTAC+TGG 0.303046 4_1:-71093090 None:intergenic
AGCATGCTTATCTGCATATA+AGG 0.327995 4_1:-71095525 None:intergenic
CTCTGTCACCAATTTCATAT+AGG 0.334434 4_1:-71095332 None:intergenic
TTGTTCTATTACCTGCCTAT+TGG 0.336616 4_1:+71095947 Msa0569230:three_prime_UTR
GGAGAAAGGTAGAGAGTTGC+AGG 0.344873 4_1:+71093161 Msa0569230:CDS
GAAGAGTTGCAATTGTAAAC+TGG 0.356751 4_1:-71095565 None:intergenic
GCACTGGCCCTATATGAAAT+TGG 0.374815 4_1:+71095324 Msa0569230:CDS
CAGGCTCTTGGTGACTTCAA+TGG 0.375521 4_1:+71093180 Msa0569230:CDS
TCTGTCACCAATTTCATATA+GGG 0.381685 4_1:-71095331 None:intergenic
AGGAAGTGAAGTGAAAAGTA+TGG 0.383576 4_1:+71092840 Msa0569230:exon
TCGCAATGGAAGATTGGAAA+TGG 0.391615 4_1:-71092893 None:intergenic
TTCTCGTGGTGTTGAGTTGT+TGG 0.401266 4_1:+71093140 Msa0569230:CDS
ATGATTTCGCAATGGAAGAT+TGG 0.409414 4_1:-71092899 None:intergenic
CCTTCACCAAACGCAGGAAA+TGG 0.418612 4_1:-71093039 None:intergenic
AGCTATATGAAAACTTTCTC+AGG 0.432616 4_1:+71095731 Msa0569230:three_prime_UTR
GAGGTAGAAAGCAAAATATC+AGG 0.447983 4_1:+71092820 Msa0569230:five_prime_UTR
CCATTTCCTGCGTTTGGTGA+AGG 0.455033 4_1:+71093039 Msa0569230:CDS
AAAGCATTGAATATTTGATA+AGG 0.457295 4_1:+71092798 None:intergenic
AAAAGAATTCTGAATTCTGA+TGG 0.476340 4_1:-71092926 None:intergenic
ATGTTGTCTTTGATGTTGCA+TGG 0.478295 4_1:+71095869 Msa0569230:three_prime_UTR
TAGCATTCTCTGAGTATGCC+AGG 0.480134 4_1:+71095292 Msa0569230:CDS
CGCAATGGAAGATTGGAAAT+GGG 0.484979 4_1:-71092892 None:intergenic
GGTAGAGAGTTGCAGGCTCT+TGG 0.490159 4_1:+71093168 Msa0569230:CDS
AGAAGAAGCAATAGCAGAGA+TGG 0.490588 4_1:+71095353 Msa0569230:CDS
AAACGTATAAATATAATGTA+AGG 0.497500 4_1:-71095688 None:intergenic
CTCTTTCAGAACGAGTTACT+GGG 0.504101 4_1:-71093089 None:intergenic
GGTGTTGAGTTGTTGGAGAA+AGG 0.504251 4_1:+71093147 Msa0569230:CDS
TAGAGAGAGGAATAGAGAAA+AGG 0.525991 4_1:-71093002 None:intergenic
ACGCAGGAAATGGAATGAAA+AGG 0.526887 4_1:-71093029 None:intergenic
TGTTGTCTTTGATGTTGCAT+GGG 0.528597 4_1:+71095870 Msa0569230:three_prime_UTR
ATATCACTAAAAGGGTATCC+AGG 0.533062 4_1:+71095387 Msa0569230:CDS
TATGAAAGATCTGTAAAATG+AGG 0.541188 4_1:-71095593 None:intergenic
GGCCAGTGCTCTCCCTACCC+TGG 0.548080 4_1:-71095310 None:intergenic
ACGTTTCAATATCACTAAAA+GGG 0.548257 4_1:+71095379 Msa0569230:CDS
TGGCATACTCAGAGAATGCT+AGG 0.551119 4_1:-71095290 None:intergenic
GCATTGAATATTTGATAAGG+AGG 0.568760 4_1:+71092801 None:intergenic
TGCAGAGAACTAATCAGACT+TGG 0.576061 4_1:-71095641 None:intergenic
TCTCTGAGTATGCCAGGGTA+GGG 0.577295 4_1:+71095298 Msa0569230:CDS
TTCTCTGAGTATGCCAGGGT+AGG 0.578663 4_1:+71095297 Msa0569230:CDS
ATGAAAAGGAAACTAGAGAG+AGG 0.580405 4_1:-71093015 None:intergenic
AGAGAACTAATCAGACTTGG+AGG 0.581474 4_1:-71095638 None:intergenic
AGTGAAGTGAAAAGTATGGT+AGG 0.588255 4_1:+71092844 Msa0569230:exon
TGCCAGGGTAGGGAGAGCAC+TGG 0.601658 4_1:+71095308 Msa0569230:CDS
ATCTCACAAAGAGTTTCTCG+TGG 0.622042 4_1:+71093126 Msa0569230:CDS
AGCATTCTCTGAGTATGCCA+GGG 0.637209 4_1:+71095293 Msa0569230:CDS
ATGCAACATCAAAGACAACA+TGG 0.647590 4_1:-71095867 None:intergenic
CTGTCACCTTCACCAAACGC+AGG 0.685417 4_1:-71093045 None:intergenic
AATGGAAGATTGGAAATGGG+TGG 0.722480 4_1:-71092889 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATGTAAAAAAGAAAAAA+CGG - chr4_1:71095789-71095808 None:intergenic 10.0%
!!! ATTCTCTTTTAATTTTTTCT+TGG - chr4_1:71094470-71094489 None:intergenic 15.0%
!! TTATAATACTTGTATTTGTA+TGG + chr4_1:71094715-71094734 Msa0569230:intron 15.0%
!!! TATAATAAAACTGATTTTAG+AGG + chr4_1:71095019-71095038 Msa0569230:intron 15.0%
!! TATGAACATAAACTTATTAA+TGG - chr4_1:71095229-71095248 None:intergenic 15.0%
!! AAACGTATAAATATAATGTA+AGG - chr4_1:71095691-71095710 None:intergenic 15.0%
!!! GCAAATATTCATTTACTTTT+GGG - chr4_1:71093836-71093855 None:intergenic 20.0%
!!! AGCAAATATTCATTTACTTT+TGG - chr4_1:71093837-71093856 None:intergenic 20.0%
!! TCAAACATTAATTTAGTAGT+AGG - chr4_1:71093893-71093912 None:intergenic 20.0%
!!! TTGGTTGTTTATCTTTTATA+AGG + chr4_1:71093947-71093966 Msa0569230:intron 20.0%
!!! TTTTATAAGGTTATGTTGTT+TGG + chr4_1:71093960-71093979 Msa0569230:intron 20.0%
!! TATAGATTGTAAGAAATAAG+TGG + chr4_1:71094082-71094101 Msa0569230:intron 20.0%
!! AGTATGAAAAGAATTAATCT+TGG - chr4_1:71094251-71094270 None:intergenic 20.0%
!! ATAAACTATATGTATGCTTA+TGG + chr4_1:71094328-71094347 Msa0569230:intron 20.0%
!! ACCCTGAATAAATATTATTT+GGG - chr4_1:71094561-71094580 None:intergenic 20.0%
!! AACCCTGAATAAATATTATT+TGG - chr4_1:71094562-71094581 None:intergenic 20.0%
!!! TGTAAGAGTGTATTATTTTT+TGG + chr4_1:71094973-71094992 Msa0569230:intron 20.0%
! AAAAGAATTCTGAATTCTGA+TGG - chr4_1:71092929-71092948 None:intergenic 25.0%
! TTGCTTGTTTATCTTCAATT+TGG + chr4_1:71093252-71093271 Msa0569230:intron 25.0%
! GTTTATCTTCAATTTGGTAA+TGG + chr4_1:71093258-71093277 Msa0569230:intron 25.0%
!!! TCAATTTGGTAATGGATTAT+TGG + chr4_1:71093266-71093285 Msa0569230:intron 25.0%
! ACAAAAGGAAAAAGGAAAAA+CGG - chr4_1:71093319-71093338 None:intergenic 25.0%
! AATGGCAATCTAAATTGATA+TGG - chr4_1:71093530-71093549 None:intergenic 25.0%
! ATATCAATTTAGATTGCCAT+TGG + chr4_1:71093529-71093548 Msa0569230:intron 25.0%
! TTAATAGATTTCAGTAAAGG+TGG - chr4_1:71093560-71093579 None:intergenic 25.0%
! ACCTTTACTGAAATCTATTA+AGG + chr4_1:71093559-71093578 Msa0569230:intron 25.0%
! CCTTTACTGAAATCTATTAA+GGG + chr4_1:71093560-71093579 Msa0569230:intron 25.0%
! TTCTATTAAAAATGGGTGTT+TGG - chr4_1:71093810-71093829 None:intergenic 25.0%
! TGGGTGATTCTATTAAAAAT+GGG - chr4_1:71093817-71093836 None:intergenic 25.0%
! TTGGGTGATTCTATTAAAAA+TGG - chr4_1:71093818-71093837 None:intergenic 25.0%
! AATAATAAACTTGTCATCAG+AGG - chr4_1:71094062-71094081 None:intergenic 25.0%
! AAAATAGTAGATGAGATATG+AGG + chr4_1:71094126-71094145 Msa0569230:intron 25.0%
! AAATAGTAGATGAGATATGA+GGG + chr4_1:71094127-71094146 Msa0569230:intron 25.0%
! AAATGTTAGTCATCTATGTA+TGG - chr4_1:71094192-71094211 None:intergenic 25.0%
! AAGCACTAACAAAAATATCT+GGG + chr4_1:71094431-71094450 Msa0569230:intron 25.0%
! TGCCCAAATAATATTTATTC+AGG + chr4_1:71094556-71094575 Msa0569230:intron 25.0%
! GCCCAAATAATATTTATTCA+GGG + chr4_1:71094557-71094576 Msa0569230:intron 25.0%
!! TTGTATGGACTAAAAATTGT+AGG + chr4_1:71094730-71094749 Msa0569230:intron 25.0%
!! GAATAGGTTCATTTTGTATT+TGG + chr4_1:71095158-71095177 Msa0569230:intron 25.0%
! ACGTTTCAATATCACTAAAA+GGG + chr4_1:71095379-71095398 Msa0569230:CDS 25.0%
! TATGAAAGATCTGTAAAATG+AGG - chr4_1:71095596-71095615 None:intergenic 25.0%
!!! ATGGTTTTATGATTTCGCAA+TGG - chr4_1:71092910-71092929 None:intergenic 30.0%
GTATTATGTCTTGTCACAAA+AGG - chr4_1:71093334-71093353 None:intergenic 30.0%
! TGTTTTCACAAGCTCTTAAA+CGG - chr4_1:71093378-71093397 None:intergenic 30.0%
TACTACATCTCAATCTTAGA+TGG - chr4_1:71093500-71093519 None:intergenic 30.0%
CCCTTAATAGATTTCAGTAA+AGG - chr4_1:71093563-71093582 None:intergenic 30.0%
TTTCAATAATCCGAGAGATA+AGG + chr4_1:71093623-71093642 Msa0569230:intron 30.0%
TTCAATAATCCGAGAGATAA+GGG + chr4_1:71093624-71093643 Msa0569230:intron 30.0%
CAAGCACTAACAAAAATATC+TGG + chr4_1:71094430-71094449 Msa0569230:intron 30.0%
! TATCTAGAGTAAGTCTTTCA+TGG - chr4_1:71094589-71094608 None:intergenic 30.0%
GGAATTTCGAAAAAACAAAC+CGG + chr4_1:71094655-71094674 Msa0569230:intron 30.0%
TTCAGATGTACAACAAAACA+TGG - chr4_1:71094759-71094778 None:intergenic 30.0%
!!! TCTGTTGTTTTGTTTAGACA+GGG - chr4_1:71094794-71094813 None:intergenic 30.0%
! TAGGTTCATTTTGTATTTGG+TGG + chr4_1:71095161-71095180 Msa0569230:intron 30.0%
TTTCAATCACCTACAAAAAC+AGG - chr4_1:71095260-71095279 None:intergenic 30.0%
TCTGTCACCAATTTCATATA+GGG - chr4_1:71095334-71095353 None:intergenic 30.0%
GACGTTTCAATATCACTAAA+AGG + chr4_1:71095378-71095397 Msa0569230:CDS 30.0%
AGCTATATGAAAACTTTCTC+AGG + chr4_1:71095731-71095750 Msa0569230:three_prime_UTR 30.0%
TATGAAAACTTTCTCAGGTT+TGG + chr4_1:71095736-71095755 Msa0569230:three_prime_UTR 30.0%
GAGGTAGAAAGCAAAATATC+AGG + chr4_1:71092820-71092839 Msa0569230:five_prime_UTR 35.0%
AGGAAGTGAAGTGAAAAGTA+TGG + chr4_1:71092840-71092859 Msa0569230:exon 35.0%
! AGTGAAGTGAAAAGTATGGT+AGG + chr4_1:71092844-71092863 Msa0569230:exon 35.0%
ATGATTTCGCAATGGAAGAT+TGG - chr4_1:71092902-71092921 None:intergenic 35.0%
TAGAGAGAGGAATAGAGAAA+AGG - chr4_1:71093005-71093024 None:intergenic 35.0%
ATGAAAAGGAAACTAGAGAG+AGG - chr4_1:71093018-71093037 None:intergenic 35.0%
TAACCCAATATCCTTTCGTT+AGG + chr4_1:71093226-71093245 Msa0569230:intron 35.0%
GAACCTAACGAAAGGATATT+GGG - chr4_1:71093232-71093251 None:intergenic 35.0%
AGAACCTAACGAAAGGATAT+TGG - chr4_1:71093233-71093252 None:intergenic 35.0%
GTCTTGTCACAAAAGGAAAA+AGG - chr4_1:71093327-71093346 None:intergenic 35.0%
!! GAAAACATCGTGTTGCTTAT+AGG + chr4_1:71093391-71093410 Msa0569230:intron 35.0%
AACATAAGTGCGTATCACAT+AGG - chr4_1:71093452-71093471 None:intergenic 35.0%
GAAATCTATTAAGGGACGTT+TGG + chr4_1:71093568-71093587 Msa0569230:intron 35.0%
CTGCAATCATAGGCTATTTA+AGG - chr4_1:71093654-71093673 None:intergenic 35.0%
CTTAAATAGCCTATGATTGC+AGG + chr4_1:71093652-71093671 Msa0569230:intron 35.0%
AAACACTCACACAAGTGTTT+GGG + chr4_1:71093755-71093774 Msa0569230:intron 35.0%
ACTAGCAGTGAAACTTAACT+AGG - chr4_1:71093862-71093881 None:intergenic 35.0%
AACAGAGTTGAAGAACAAGA+GGG - chr4_1:71093929-71093948 None:intergenic 35.0%
! TTATGTTGTTTGGTTGTCAG+CGG + chr4_1:71093970-71093989 Msa0569230:intron 35.0%
GTACACAGATGTATGATGTA+TGG + chr4_1:71094373-71094392 Msa0569230:intron 35.0%
! ATGTTCCTCTGCAAAAGTTT+TGG - chr4_1:71094693-71094712 None:intergenic 35.0%
!!! GTCTGTTGTTTTGTTTAGAC+AGG - chr4_1:71094795-71094814 None:intergenic 35.0%
TCAAAGTTCATGCCAAGAAT+TGG + chr4_1:71094902-71094921 Msa0569230:intron 35.0%
CAAAGTTCATGCCAAGAATT+GGG + chr4_1:71094903-71094922 Msa0569230:intron 35.0%
!! ATTTTAGAGGCCTCATGATT+TGG + chr4_1:71095032-71095051 Msa0569230:intron 35.0%
TGAGAACTTTCCAAATCATG+AGG - chr4_1:71095045-71095064 None:intergenic 35.0%
! ATGATTTGGAAAGTTCTCAG+AGG + chr4_1:71095046-71095065 Msa0569230:intron 35.0%
!! AGTTAAGCCTTGTTCATACA+TGG + chr4_1:71095107-71095126 Msa0569230:intron 35.0%
TTGTTCATACATGGACTTCT+CGG + chr4_1:71095116-71095135 Msa0569230:intron 35.0%
AAAATGAACCTATTCGACGT+CGG - chr4_1:71095153-71095172 None:intergenic 35.0%
!!! AACATGCTACCTGTTTTTGT+AGG + chr4_1:71095248-71095267 Msa0569230:intron 35.0%
CTCTGTCACCAATTTCATAT+AGG - chr4_1:71095335-71095354 None:intergenic 35.0%
!! ATATCACTAAAAGGGTATCC+AGG + chr4_1:71095387-71095406 Msa0569230:CDS 35.0%
GCTATGAAATTGAACTTACC+TGG - chr4_1:71095408-71095427 None:intergenic 35.0%
AGCATGCTTATCTGCATATA+AGG - chr4_1:71095528-71095547 None:intergenic 35.0%
GAAGAGTTGCAATTGTAAAC+TGG - chr4_1:71095568-71095587 None:intergenic 35.0%
ATGCAACATCAAAGACAACA+TGG - chr4_1:71095870-71095889 None:intergenic 35.0%
ATGTTGTCTTTGATGTTGCA+TGG + chr4_1:71095869-71095888 Msa0569230:three_prime_UTR 35.0%
TGTTGTCTTTGATGTTGCAT+GGG + chr4_1:71095870-71095889 Msa0569230:three_prime_UTR 35.0%
TTGTTCTATTACCTGCCTAT+TGG + chr4_1:71095947-71095966 Msa0569230:three_prime_UTR 35.0%
AATGGAAGATTGGAAATGGG+TGG - chr4_1:71092892-71092911 None:intergenic 40.0%
CGCAATGGAAGATTGGAAAT+GGG - chr4_1:71092895-71092914 None:intergenic 40.0%
TCGCAATGGAAGATTGGAAA+TGG - chr4_1:71092896-71092915 None:intergenic 40.0%
ACGCAGGAAATGGAATGAAA+AGG - chr4_1:71093032-71093051 None:intergenic 40.0%
TTCATTCCATTTCCTGCGTT+TGG + chr4_1:71093033-71093052 Msa0569230:CDS 40.0%
CTCTTTCAGAACGAGTTACT+GGG - chr4_1:71093092-71093111 None:intergenic 40.0%
TCTCTTTCAGAACGAGTTAC+TGG - chr4_1:71093093-71093112 None:intergenic 40.0%
ATCTCACAAAGAGTTTCTCG+TGG + chr4_1:71093126-71093145 Msa0569230:CDS 40.0%
! CGCTCTTCAATACTTTTCTC+AGG + chr4_1:71093203-71093222 Msa0569230:CDS 40.0%
ACAAGCAAGAACCTAACGAA+AGG - chr4_1:71093240-71093259 None:intergenic 40.0%
AGTAAAGGTGGAAAAGCCAA+TGG - chr4_1:71093548-71093567 None:intergenic 40.0%
TAAGGCTTACCCTTATCTCT+CGG - chr4_1:71093636-71093655 None:intergenic 40.0%
CAAACACTTGTGTGAGTGTT+TGG - chr4_1:71093756-71093775 None:intergenic 40.0%
CAAACACTCACACAAGTGTT+TGG + chr4_1:71093754-71093773 Msa0569230:intron 40.0%
CAACAGAGTTGAAGAACAAG+AGG - chr4_1:71093930-71093949 None:intergenic 40.0%
CTCTTGTTCTTCAACTCTGT+TGG + chr4_1:71093928-71093947 Msa0569230:intron 40.0%
CATGTGAACAATGATGCAAC+TGG - chr4_1:71094015-71094034 None:intergenic 40.0%
GCAATCCATGTACGCTTATA+TGG + chr4_1:71094225-71094244 Msa0569230:intron 40.0%
CACACATATGTATCAGTGCA+TGG - chr4_1:71094297-71094316 None:intergenic 40.0%
TATGGCTAGATAGATACACG+AGG + chr4_1:71094391-71094410 Msa0569230:intron 40.0%
CAATCTGCTACTGAAGAACA+TGG + chr4_1:71094617-71094636 Msa0569230:intron 40.0%
! ACATGGTATGCAGTAGCTTT+TGG + chr4_1:71094634-71094653 Msa0569230:intron 40.0%
AACAAAACAACAGACACCAC+CGG + chr4_1:71094800-71094819 Msa0569230:intron 40.0%
GCTAGTAAAGTCCCAATTCT+TGG - chr4_1:71094917-71094936 None:intergenic 40.0%
TTTAGCCACATGAAGTTGCA+AGG - chr4_1:71095088-71095107 None:intergenic 40.0%
GAGAAGTCCATGTATGAACA+AGG - chr4_1:71095117-71095136 None:intergenic 40.0%
TGTTCATACATGGACTTCTC+GGG + chr4_1:71095117-71095136 Msa0569230:intron 40.0%
GTGATGCCATGAAATAGATC+AGG - chr4_1:71095192-71095211 None:intergenic 40.0%
AGAAGAAGCAATAGCAGAGA+TGG + chr4_1:71095353-71095372 Msa0569230:CDS 40.0%
! ATGTTCGAGACAAAAAGCAC+TGG + chr4_1:71095615-71095634 Msa0569230:CDS 40.0%
AGAGAACTAATCAGACTTGG+AGG - chr4_1:71095641-71095660 None:intergenic 40.0%
TGCAGAGAACTAATCAGACT+TGG - chr4_1:71095644-71095663 None:intergenic 40.0%
! TTCTCGTGGTGTTGAGTTGT+TGG + chr4_1:71093140-71093159 Msa0569230:CDS 45.0%
! GGTGTTGAGTTGTTGGAGAA+AGG + chr4_1:71093147-71093166 Msa0569230:CDS 45.0%
TTTCATGTAAGCTCCCCCAA+TGG - chr4_1:71093678-71093697 None:intergenic 45.0%
CTTGGCCATATAAGCGTACA+TGG - chr4_1:71094233-71094252 None:intergenic 45.0%
! TCAGTGCATGGAAGCATACA+AGG - chr4_1:71094285-71094304 None:intergenic 45.0%
ATACACGAGGCACACTTACT+TGG + chr4_1:71094404-71094423 Msa0569230:intron 45.0%
! ACCTGCCAAAACTTTTGCAG+AGG + chr4_1:71094685-71094704 Msa0569230:intron 45.0%
!! TCCTCTGCAAAAGTTTTGGC+AGG - chr4_1:71094689-71094708 None:intergenic 45.0%
TGTTCCTAGACTCCTAGTTC+CGG - chr4_1:71094822-71094841 None:intergenic 45.0%
TAGGAGTCTAGGAACATCTG+AGG + chr4_1:71094826-71094845 Msa0569230:intron 45.0%
GAGGCAAAGATGTCACACAA+TGG + chr4_1:71094845-71094864 Msa0569230:intron 45.0%
ATCCACCTTGCAACTTCATG+TGG + chr4_1:71095080-71095099 Msa0569230:intron 45.0%
TGAAATGACCGACGTCGAAT+AGG + chr4_1:71095142-71095161 Msa0569230:intron 45.0%
GCTCGACCTGATCTATTTCA+TGG + chr4_1:71095183-71095202 Msa0569230:intron 45.0%
TGGCATACTCAGAGAATGCT+AGG - chr4_1:71095293-71095312 None:intergenic 45.0%
TAGCATTCTCTGAGTATGCC+AGG + chr4_1:71095292-71095311 Msa0569230:CDS 45.0%
AGCATTCTCTGAGTATGCCA+GGG + chr4_1:71095293-71095312 Msa0569230:CDS 45.0%
! GCACTGGCCCTATATGAAAT+TGG + chr4_1:71095324-71095343 Msa0569230:CDS 45.0%
CCTTCACCAAACGCAGGAAA+TGG - chr4_1:71093042-71093061 None:intergenic 50.0%
! CCATTTCCTGCGTTTGGTGA+AGG + chr4_1:71093039-71093058 Msa0569230:CDS 50.0%
GGAGAAAGGTAGAGAGTTGC+AGG + chr4_1:71093161-71093180 Msa0569230:CDS 50.0%
! CAGGCTCTTGGTGACTTCAA+TGG + chr4_1:71093180-71093199 Msa0569230:CDS 50.0%
AGCCTATGATTGCAGGCCAT+TGG + chr4_1:71093659-71093678 Msa0569230:intron 50.0%
GCCTATGATTGCAGGCCATT+GGG + chr4_1:71093660-71093679 Msa0569230:intron 50.0%
CCTATGATTGCAGGCCATTG+GGG + chr4_1:71093661-71093680 Msa0569230:intron 50.0%
CTATGATTGCAGGCCATTGG+GGG + chr4_1:71093662-71093681 Msa0569230:intron 50.0%
GAAGTTGCAAGGTGGATGAG+TGG - chr4_1:71095077-71095096 None:intergenic 50.0%
AGCCACATGAAGTTGCAAGG+TGG - chr4_1:71095085-71095104 None:intergenic 50.0%
TTCTCTGAGTATGCCAGGGT+AGG + chr4_1:71095297-71095316 Msa0569230:CDS 50.0%
TCTCTGAGTATGCCAGGGTA+GGG + chr4_1:71095298-71095317 Msa0569230:CDS 50.0%
CTGTCACCTTCACCAAACGC+AGG - chr4_1:71093048-71093067 None:intergenic 55.0%
GGTAGAGAGTTGCAGGCTCT+TGG + chr4_1:71093168-71093187 Msa0569230:CDS 55.0%
CCCCAATGGCCTGCAATCAT+AGG - chr4_1:71093664-71093683 None:intergenic 55.0%
!! GTTTTGGCAGGTAGCGATGC+CGG - chr4_1:71094677-71094696 None:intergenic 55.0%
CAACAGACACCACCGGAACT+AGG + chr4_1:71094807-71094826 Msa0569230:intron 55.0%
ACCACCGGAACTAGGAGTCT+AGG + chr4_1:71094815-71094834 Msa0569230:intron 55.0%
TCCTAGACTCCTAGTTCCGG+TGG - chr4_1:71094819-71094838 None:intergenic 55.0%
! TGCCAGGGTAGGGAGAGCAC+TGG + chr4_1:71095308-71095327 Msa0569230:CDS 65.0%
GGCCAGTGCTCTCCCTACCC+TGG - chr4_1:71095313-71095332 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 71092812 71095970 71092812 ID=Msa0569230;Name=Msa0569230
chr4_1 mRNA 71092812 71095970 71092812 ID=Msa0569230-mRNA-1;Parent=Msa0569230;Name=Msa0569230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=47|1|1|1|1|1|3|285|229
chr4_1 exon 71092812 71093224 71092812 ID=Msa0569230-mRNA-1:exon:24039;Parent=Msa0569230-mRNA-1
chr4_1 exon 71095270 71095408 71095270 ID=Msa0569230-mRNA-1:exon:24040;Parent=Msa0569230-mRNA-1
chr4_1 exon 71095501 71095970 71095501 ID=Msa0569230-mRNA-1:exon:24041;Parent=Msa0569230-mRNA-1
chr4_1 five_prime_UTR 71092812 71092858 71092812 ID=Msa0569230-mRNA-1:five_prime_utr;Parent=Msa0569230-mRNA-1
chr4_1 CDS 71092859 71093224 71092859 ID=Msa0569230-mRNA-1:cds;Parent=Msa0569230-mRNA-1
chr4_1 CDS 71095270 71095408 71095270 ID=Msa0569230-mRNA-1:cds;Parent=Msa0569230-mRNA-1
chr4_1 CDS 71095501 71095685 71095501 ID=Msa0569230-mRNA-1:cds;Parent=Msa0569230-mRNA-1
chr4_1 three_prime_UTR 71095686 71095970 71095686 ID=Msa0569230-mRNA-1:three_prime_utr;Parent=Msa0569230-mRNA-1
Gene Sequence

>Msa0569230

ATGGTAGGTGCATGCAGAGCAGTAGCAGCACCACCCATTTCCAATCTTCCATTGCGAAATCATAAAACCATCAGAATTCAGAATTCTTTTCATCAGAACAAAAGCAAAGCTTTCAGAGCTCAACTTTCAAATAGACGCTTGTTCCTTTTCTCTATTCCTCTCTCTAGTTTCCTTTTCATTCCATTTCCTGCGTTTGGTGAAGGTGACAGTGTCATTTCACAAGAGTATGACCCAGTAACTCGTTCTGAAAGAGATGCAAGTGCTTTAATCTCACAAAGAGTTTCTCGTGGTGTTGAGTTGTTGGAGAAAGGTAGAGAGTTGCAGGCTCTTGGTGACTTCAATGGCGCTCTTCAATACTTTTCTCAGGTGATTGAAAGCTACAAAGACCTAGCATTCTCTGAGTATGCCAGGGTAGGGAGAGCACTGGCCCTATATGAAATTGGTGACAGAGAAGAAGCAATAGCAGAGATGGAAGACGTTTCAATATCACTAAAAGGGTATCCAGAAGTACATGCAGCTCTTGCAGCAGCCTTATATGCAGATAAGCATGCTGCTTTGCTTGCTGAAAACCAGTTTACAATTGCAACTCTTCTTGATCCTCATTTTACAGATCTTTCATATGTTCGAGACAAAAAGCACTGGCCTCCAAGTCTGATTAGTTCTCTGCAGCATTTCATTACACTATCTTAA

Protein sequence

>Msa0569230

MVGACRAVAAPPISNLPLRNHKTIRIQNSFHQNKSKAFRAQLSNRRLFLFSIPLSSFLFIPFPAFGEGDSVISQEYDPVTRSERDASALISQRVSRGVELLEKGRELQALGDFNGALQYFSQVIESYKDLAFSEYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYADKHAALLAENQFTIATLLDPHFTDLSYVRDKKHWPPSLISSLQHFITLS*