Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991620 | XP_013443358.1 | 97.222 | 144 | 4 | 0 | 1 | 144 | 1 | 144 | 4.82e-94 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991620 | sp|Q9FJ98|RPD6A_ARATH | 79.310 | 145 | 28 | 2 | 1 | 144 | 1 | 144 | 1.06e-71 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991620 | A0A072TKL5 | 97.222 | 144 | 4 | 0 | 1 | 144 | 1 | 144 | 2.30e-94 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0257450 | Msa0991620 | 0.802499 | 5.449582e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991620 | MtrunA17_Chr6g0472581 | 97.222 | 144 | 4 | 0 | 1 | 144 | 1 | 144 | 4.43e-98 | 278 |
| Msa0991620 | MtrunA17_Chr7g0258091 | 84.138 | 145 | 22 | 1 | 1 | 144 | 1 | 145 | 7.51e-73 | 214 |
| Msa0991620 | MtrunA17_Chr6g0471881 | 95.349 | 43 | 2 | 0 | 102 | 144 | 1 | 43 | 1.10e-24 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991620 | AT5G51940.1 | 79.310 | 145 | 28 | 2 | 1 | 144 | 1 | 144 | 1.08e-72 | 214 |
| Msa0991620 | AT2G04630.1 | 79.310 | 145 | 28 | 2 | 1 | 144 | 1 | 144 | 9.91e-72 | 212 |
Find 56 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATGAGCGTGCACGGATTT+TGG | 0.198808 | 6_4:-57209841 | Msa0991620:CDS |
| GTGTAAGGGGTTTAAGAATT+AGG | 0.217928 | 6_4:-57211298 | None:intergenic |
| TTTCTCTCGAAGCTCTTTCA+TGG | 0.343115 | 6_4:+57208663 | None:intergenic |
| GACTCATGGAAGAGGCAAAT+TGG | 0.371145 | 6_4:-57208427 | Msa0991620:CDS |
| GCCTATTGAAACCGAGGAAA+AGG | 0.427074 | 6_4:-57209916 | Msa0991620:CDS |
| GAATTCCTTACTTCAATCTC+AGG | 0.430246 | 6_4:+57210075 | None:intergenic |
| AATTGTGCAGCTATGAAGAT+TGG | 0.435283 | 6_4:-57208474 | Msa0991620:intron |
| ATTGTGCAGCTATGAAGATT+GGG | 0.436731 | 6_4:-57208473 | Msa0991620:intron |
| GTCTTTCGAGGCCTTTCTGT+TGG | 0.438965 | 6_4:+57209882 | None:intergenic |
| AATCCGTGCACGCTCATACT+TGG | 0.443078 | 6_4:+57209845 | None:intergenic |
| GTACCCGTGCTCTTCAAATC+AGG | 0.449097 | 6_4:-57209818 | Msa0991620:intron |
| GGCAAATTGGTGGTGATTGA+TGG | 0.457288 | 6_4:-57208414 | Msa0991620:exon |
| CATAACCTCTTATTATGCCT+TGG | 0.463278 | 6_4:-57208263 | Msa0991620:three_prime_UTR |
| ATATATTTCGATGTCTTTCG+AGG | 0.473400 | 6_4:+57209870 | None:intergenic |
| ACTTCAATCTCAGGATCTAC+TGG | 0.475450 | 6_4:+57210084 | None:intergenic |
| GACTACAATGACTTGGACAT+CGG | 0.488556 | 6_4:-57211221 | Msa0991620:CDS |
| AAGTACCAAGGCATAATAAG+AGG | 0.489624 | 6_4:+57208258 | None:intergenic |
| GATTGTAATTACCTTCCATC+AGG | 0.491559 | 6_4:+57208610 | None:intergenic |
| ACAAGCGGAGCTTCAGCGTA+AGG | 0.505281 | 6_4:-57211269 | Msa0991620:five_prime_UTR |
| GGGAGTTGATGAATTGATTG+TGG | 0.509393 | 6_4:-57208452 | Msa0991620:CDS |
| CCTTCCAACTCAACCATGAC+AGG | 0.524719 | 6_4:+57209682 | None:intergenic |
| ACTACAATGACTTGGACATC+GGG | 0.528904 | 6_4:-57211220 | Msa0991620:intron |
| AAGTAACGACGGATCGTGAA+GGG | 0.541998 | 6_4:+57208634 | None:intergenic |
| CGACGACGACTACAATGACT+TGG | 0.542431 | 6_4:-57211228 | Msa0991620:CDS |
| TGCACCTGTCATGGTTGAGT+TGG | 0.544974 | 6_4:-57209686 | Msa0991620:CDS |
| ATCCGTCGTTACTTGCCTGA+TGG | 0.545359 | 6_4:-57208625 | Msa0991620:CDS |
| CAACATTAGTACCACACTAC+AGG | 0.545512 | 6_4:+57208333 | None:intergenic |
| CTGTCATGGTTGAGTTGGAA+GGG | 0.548671 | 6_4:-57209681 | Msa0991620:CDS |
| AATTGATTGTGGAAGACTCA+TGG | 0.564886 | 6_4:-57208441 | Msa0991620:CDS |
| GACAACAATGATGAGATGGC+TGG | 0.565670 | 6_4:-57209942 | Msa0991620:CDS |
| AAAGTTTCTCGTACCTCAAG+CGG | 0.565990 | 6_4:+57209649 | None:intergenic |
| AACAAGAAGAGCCAACAGAA+AGG | 0.566880 | 6_4:-57209893 | Msa0991620:CDS |
| AATACCTGATTTGAAGAGCA+CGG | 0.568038 | 6_4:+57209814 | None:intergenic |
| CAAGTAACGACGGATCGTGA+AGG | 0.577624 | 6_4:+57208633 | None:intergenic |
| ATACCTGATTTGAAGAGCAC+GGG | 0.578359 | 6_4:+57209815 | None:intergenic |
| CTGTAGTGTGGTACTAATGT+TGG | 0.582574 | 6_4:-57208332 | Msa0991620:three_prime_UTR |
| TGACCAAGTATGAGCGTGCA+CGG | 0.583030 | 6_4:-57209848 | Msa0991620:CDS |
| GTCGTTACTTGCCTGATGGA+AGG | 0.583890 | 6_4:-57208621 | Msa0991620:intron |
| CAAGCGGAGCTTCAGCGTAA+GGG | 0.585456 | 6_4:-57211268 | Msa0991620:five_prime_UTR |
| TTGTGGAAGACTCATGGAAG+AGG | 0.587346 | 6_4:-57208435 | Msa0991620:CDS |
| CCTGTCATGGTTGAGTTGGA+AGG | 0.591673 | 6_4:-57209682 | Msa0991620:CDS |
| AAGTTTCTCGTACCTCAAGC+GGG | 0.593900 | 6_4:+57209650 | None:intergenic |
| CAAGTCATTGTAGTCGTCGT+CGG | 0.596315 | 6_4:+57211229 | None:intergenic |
| AAGTATGAATGCACCTGTCA+TGG | 0.600527 | 6_4:-57209695 | Msa0991620:CDS |
| TTGATAGGAAGGTGCAGAGG+TGG | 0.602482 | 6_4:-57209979 | Msa0991620:intron |
| TGTCATGGTTGAGTTGGAAG+GGG | 0.604272 | 6_4:-57209680 | Msa0991620:CDS |
| AGGGGAAACTGACCCGCTTG+AGG | 0.609424 | 6_4:-57209662 | Msa0991620:intron |
| TCATGGAAGAGGCAAATTGG+TGG | 0.616416 | 6_4:-57208424 | Msa0991620:CDS |
| CAACGACAACAATGATGAGA+TGG | 0.626792 | 6_4:-57209946 | Msa0991620:CDS |
| TGGAGAGCCTATTGAAACCG+AGG | 0.643087 | 6_4:-57209922 | Msa0991620:CDS |
| TTCCATCAGGCAAGTAACGA+CGG | 0.645675 | 6_4:+57208623 | None:intergenic |
| TTGTGCAGCTATGAAGATTG+GGG | 0.646097 | 6_4:-57208472 | Msa0991620:intron |
| CATAAACTTGACCTGTAGTG+TGG | 0.646378 | 6_4:-57208344 | Msa0991620:three_prime_UTR |
| AGAATTAGGACACAAACAAG+CGG | 0.655310 | 6_4:-57211284 | Msa0991620:five_prime_UTR |
| TGGTTGATAGGAAGGTGCAG+AGG | 0.655672 | 6_4:-57209982 | Msa0991620:intron |
| GTAAGGGTTTCTCATCACAA+TGG | 0.725059 | 6_4:-57211252 | Msa0991620:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+GGG | + | chr6_4:57210902-57210921 | None:intergenic | 0.0% |
| !! | TAAAAAAAAAAAAAAAAAAA+AGG | + | chr6_4:57210903-57210922 | None:intergenic | 0.0% |
| !! | TCAAAAATGAAAATTAAATT+GGG | + | chr6_4:57208349-57208368 | None:intergenic | 10.0% |
| !! | TTCAAAAATGAAAATTAAAT+TGG | + | chr6_4:57208350-57208369 | None:intergenic | 10.0% |
| !! | TAATTTAAAAAATTCATCAA+CGG | + | chr6_4:57209471-57209490 | None:intergenic | 10.0% |
| !!! | TGATGAATTTTTTAAATTAT+TGG | - | chr6_4:57209472-57209491 | Msa0991620:intron | 10.0% |
| !! | ATTATTGTAATATGAAAATA+TGG | + | chr6_4:57210263-57210282 | None:intergenic | 10.0% |
| !! | TTTATAATCTTATTATTCAA+AGG | + | chr6_4:57210619-57210638 | None:intergenic | 10.0% |
| !! | AAAACAATTAATAATCAATT+TGG | + | chr6_4:57210677-57210696 | None:intergenic | 10.0% |
| !! | CAAAAATGAAAATTAAATTG+GGG | + | chr6_4:57208348-57208367 | None:intergenic | 15.0% |
| !! | GGAATTAATTATTATCAATA+AGG | + | chr6_4:57208376-57208395 | None:intergenic | 15.0% |
| !! | AAAAATAATAAAACGATATC+AGG | + | chr6_4:57208397-57208416 | None:intergenic | 15.0% |
| !! | ACAAACATATATGAATATTA+AGG | - | chr6_4:57209439-57209458 | Msa0991620:intron | 15.0% |
| !!! | TTTTTAAATTATTGGTTGAT+AGG | - | chr6_4:57209480-57209499 | Msa0991620:intron | 15.0% |
| !!! | TTTTTTTTTTAGTTTTGGAA+AGG | - | chr6_4:57210912-57210931 | Msa0991620:intron | 15.0% |
| !!! | TTTTTTTTTAGTTTTGGAAA+GGG | - | chr6_4:57210913-57210932 | Msa0991620:intron | 15.0% |
| !! | ACAAAACATAAAAATGAACA+TGG | + | chr6_4:57208451-57208470 | None:intergenic | 20.0% |
| !! | TATAGGAAGAAAAAACAAAA+AGG | + | chr6_4:57208499-57208518 | None:intergenic | 20.0% |
| !! | GCTTAAAAACATGAATATAT+AGG | + | chr6_4:57208516-57208535 | None:intergenic | 20.0% |
| !! | ATAAGCATTTATCATGATAA+AGG | - | chr6_4:57208888-57208907 | Msa0991620:intron | 20.0% |
| !!! | AATCTTTAAAGACATGTATA+TGG | + | chr6_4:57208964-57208983 | None:intergenic | 20.0% |
| !!! | TAAACTGTATGATCTTTTTT+AGG | + | chr6_4:57209247-57209266 | None:intergenic | 20.0% |
| !! | AAAAGATCATACAGTTTAAA+AGG | - | chr6_4:57209249-57209268 | Msa0991620:intron | 20.0% |
| !! | ATCATGTTAAAACATTTACA+AGG | + | chr6_4:57209739-57209758 | None:intergenic | 20.0% |
| !! | TCTAATTTCAAAACATATGT+CGG | - | chr6_4:57209992-57210011 | Msa0991620:intron | 20.0% |
| !!! | TTTATTTTGAAATATAGACC+AGG | + | chr6_4:57210178-57210197 | None:intergenic | 20.0% |
| !! | ATATGAAAATATGGAAAGAA+GGG | + | chr6_4:57210254-57210273 | None:intergenic | 20.0% |
| !! | AATATGAAAATATGGAAAGA+AGG | + | chr6_4:57210255-57210274 | None:intergenic | 20.0% |
| !!! | AAATTTTAATATGTGAAGAG+TGG | - | chr6_4:57210286-57210305 | Msa0991620:intron | 20.0% |
| !! | AAGATTATAAATATCTCCTT+TGG | - | chr6_4:57210628-57210647 | Msa0991620:intron | 20.0% |
| !!! | ATCAATTTGGAATTGATATA+TGG | + | chr6_4:57210664-57210683 | None:intergenic | 20.0% |
| !! | AAAAAGGTTACATTTTGCTT+TGG | + | chr6_4:57208483-57208502 | None:intergenic | 25.0% |
| !!! | TTTAAGCTTGTTTTGCATTA+TGG | - | chr6_4:57208529-57208548 | Msa0991620:intron | 25.0% |
| !!! | TTAAGCTTGTTTTGCATTAT+GGG | - | chr6_4:57208530-57208549 | Msa0991620:intron | 25.0% |
| !! | GCTTATTTGAGTTTATCTAA+TGG | - | chr6_4:57208566-57208585 | Msa0991620:intron | 25.0% |
| !!! | TTTTTTTTTGTACGTTCTCT+AGG | - | chr6_4:57208792-57208811 | Msa0991620:intron | 25.0% |
| !! | TACATGTCTTTAAAGATTGA+AGG | - | chr6_4:57208966-57208985 | Msa0991620:intron | 25.0% |
| ! | TTGAATGTAATAACATGTGT+CGG | - | chr6_4:57209124-57209143 | Msa0991620:intron | 25.0% |
| !! | GGAAAAATTTGTTCTTTCAA+AGG | + | chr6_4:57209226-57209245 | None:intergenic | 25.0% |
| ! | ATCATACAGTTTAAAAGGAA+TGG | - | chr6_4:57209254-57209273 | Msa0991620:intron | 25.0% |
| ! | AAAACACATATCTCATTAAC+TGG | + | chr6_4:57209302-57209321 | None:intergenic | 25.0% |
| !! | GTTTTGTAGTATATTACTAG+TGG | - | chr6_4:57209317-57209336 | Msa0991620:intron | 25.0% |
| ! | TCTCTCATAACAAATTTGAA+TGG | - | chr6_4:57209346-57209365 | Msa0991620:intron | 25.0% |
| ! | TCATATATGTTTGTGTTAGT+CGG | + | chr6_4:57209433-57209452 | None:intergenic | 25.0% |
| !!! | TAAATTATTGGTTGATAGGA+AGG | - | chr6_4:57209484-57209503 | Msa0991620:intron | 25.0% |
| ! | GTGAAGTTAAAATATTGTTC+TGG | - | chr6_4:57209704-57209723 | Msa0991620:intron | 25.0% |
| ! | AGATACTAACATATCAAGTT+AGG | + | chr6_4:57209936-57209955 | None:intergenic | 25.0% |
| ! | GAGCTAAACATTCAAATTAT+AGG | + | chr6_4:57210352-57210371 | None:intergenic | 25.0% |
| !! | AAACCTAAACATTCATTTTG+TGG | - | chr6_4:57210453-57210472 | Msa0991620:intron | 25.0% |
| ! | TAATGTTCATTGAAAAGAAC+TGG | - | chr6_4:57210518-57210537 | Msa0991620:intron | 25.0% |
| !!! | TACATATGTTTTGAAGTCAA+CGG | + | chr6_4:57210564-57210583 | None:intergenic | 25.0% |
| ! | TTATAAATATCTCCTTTGGA+TGG | - | chr6_4:57210632-57210651 | Msa0991620:intron | 25.0% |
| ! | TTGGAATTGATATATGGTAT+TGG | + | chr6_4:57210658-57210677 | None:intergenic | 25.0% |
| !!! | TTCAAATTCATTAGTTTGCA+AGG | - | chr6_4:57210704-57210723 | Msa0991620:intron | 25.0% |
| !!! | TCAAATTCATTAGTTTGCAA+GGG | - | chr6_4:57210705-57210724 | Msa0991620:intron | 25.0% |
| !! | CTTAACCATTTGATACATTT+TGG | - | chr6_4:57210746-57210765 | Msa0991620:intron | 25.0% |
| ! | TATCCAAAAATTAAGTACCA+AGG | + | chr6_4:57211231-57211250 | None:intergenic | 25.0% |
| CATTATGGGTATGTTTGAAT+TGG | - | chr6_4:57208544-57208563 | Msa0991620:intron | 30.0% | |
| TTGAACATAATCACATGTGT+TGG | - | chr6_4:57208657-57208676 | Msa0991620:CDS | 30.0% | |
| TTAAACTGTTTAGCCAAACA+TGG | - | chr6_4:57208931-57208950 | Msa0991620:intron | 30.0% | |
| ATACAGTTTAAAAGGAATGG+AGG | - | chr6_4:57209257-57209276 | Msa0991620:intron | 30.0% | |
| TACAGTTTAAAAGGAATGGA+GGG | - | chr6_4:57209258-57209277 | Msa0991620:intron | 30.0% | |
| ATATATTTCGATGTCTTTCG+AGG | + | chr6_4:57209607-57209626 | None:intergenic | 30.0% | |
| ! | TAACATGATGTCTTGTCTTT+TGG | - | chr6_4:57209750-57209769 | Msa0991620:intron | 30.0% |
| CTAACTTTAATCACTCACTT+TGG | - | chr6_4:57210068-57210087 | Msa0991620:intron | 30.0% | |
| ! | TTTCTCTTTAGTTTCCTAGA+AGG | - | chr6_4:57210150-57210169 | Msa0991620:intron | 30.0% |
| CTGAAATCTTTCATTTACAG+GGG | + | chr6_4:57210420-57210439 | None:intergenic | 30.0% | |
| CCTGAAATCTTTCATTTACA+GGG | + | chr6_4:57210421-57210440 | None:intergenic | 30.0% | |
| AAATGAAAGATTTCAGGCTT+TGG | - | chr6_4:57210424-57210443 | Msa0991620:intron | 30.0% | |
| GAACCACAAAATGAATGTTT+AGG | + | chr6_4:57210459-57210478 | None:intergenic | 30.0% | |
| !!! | ACATATGTTTTGAAGTCAAC+GGG | + | chr6_4:57210563-57210582 | None:intergenic | 30.0% |
| TGTGTCCAAAATGTATCAAA+TGG | + | chr6_4:57210754-57210773 | None:intergenic | 30.0% | |
| ! | ATGCCTTGGTACTTAATTTT+TGG | - | chr6_4:57211225-57211244 | Msa0991620:CDS | 30.0% |
| AGAATTAGGACACAAACAAG+CGG | - | chr6_4:57208190-57208209 | Msa0991620:three_prime_UTR | 35.0% | |
| ATTACCACACTCACCAAATT+AGG | - | chr6_4:57208316-57208335 | Msa0991620:three_prime_UTR | 35.0% | |
| TTACCACACTCACCAAATTA+GGG | - | chr6_4:57208317-57208336 | Msa0991620:three_prime_UTR | 35.0% | |
| ATTGGGGAAAAACCCTAATT+TGG | + | chr6_4:57208332-57208351 | None:intergenic | 35.0% | |
| ATGGCTAAACAAGACATTTG+TGG | + | chr6_4:57208432-57208451 | None:intergenic | 35.0% | |
| ! | ATAATCACATGTGTTGGTGT+TGG | - | chr6_4:57208663-57208682 | Msa0991620:CDS | 35.0% |
| !!! | ACAGAGGTTCTAAGACTTTT+TGG | - | chr6_4:57208714-57208733 | Msa0991620:intron | 35.0% |
| ATATGGACTTAGACCATGTT+TGG | + | chr6_4:57208947-57208966 | None:intergenic | 35.0% | |
| TAGATCCTGAGATTGAAGTA+AGG | - | chr6_4:57209394-57209413 | Msa0991620:intron | 35.0% | |
| GAATTCCTTACTTCAATCTC+AGG | + | chr6_4:57209402-57209421 | None:intergenic | 35.0% | |
| ! | AATACCTGATTTGAAGAGCA+CGG | + | chr6_4:57209663-57209682 | None:intergenic | 35.0% |
| TGCATTTGAGTATGTCTGAA+GGG | - | chr6_4:57209891-57209910 | Msa0991620:CDS | 35.0% | |
| CAGAGGAAACATGAACTATA+AGG | + | chr6_4:57210391-57210410 | None:intergenic | 35.0% | |
| CCCTGTAAATGAAAGATTTC+AGG | - | chr6_4:57210418-57210437 | Msa0991620:intron | 35.0% | |
| GCCTGAAATCTTTCATTTAC+AGG | + | chr6_4:57210422-57210441 | None:intergenic | 35.0% | |
| GATTGTAATTACCTTCCATC+AGG | + | chr6_4:57210867-57210886 | None:intergenic | 35.0% | |
| AATTGTGCAGCTATGAAGAT+TGG | - | chr6_4:57211000-57211019 | Msa0991620:intron | 35.0% | |
| ATTGTGCAGCTATGAAGATT+GGG | - | chr6_4:57211001-57211020 | Msa0991620:intron | 35.0% | |
| AATTGATTGTGGAAGACTCA+TGG | - | chr6_4:57211033-57211052 | Msa0991620:intron | 35.0% | |
| CATAACCTCTTATTATGCCT+TGG | - | chr6_4:57211211-57211230 | Msa0991620:intron | 35.0% | |
| AAGTACCAAGGCATAATAAG+AGG | + | chr6_4:57211219-57211238 | None:intergenic | 35.0% | |
| GTAAGGGTTTCTCATCACAA+TGG | - | chr6_4:57208222-57208241 | Msa0991620:three_prime_UTR | 40.0% | |
| ! | GACTACAATGACTTGGACAT+CGG | - | chr6_4:57208253-57208272 | Msa0991620:three_prime_UTR | 40.0% |
| ! | ACTACAATGACTTGGACATC+GGG | - | chr6_4:57208254-57208273 | Msa0991620:three_prime_UTR | 40.0% |
| ! | AAACCCTAATTTGGTGAGTG+TGG | + | chr6_4:57208323-57208342 | None:intergenic | 40.0% |
| TATTACCAGTGTAGACGTGT+CGG | + | chr6_4:57208618-57208637 | None:intergenic | 40.0% | |
| !!! | TTTTGTACGTTCTCTAGGAC+AGG | - | chr6_4:57208797-57208816 | Msa0991620:intron | 40.0% |
| ACTTCAATCTCAGGATCTAC+TGG | + | chr6_4:57209393-57209412 | None:intergenic | 40.0% | |
| CAACGACAACAATGATGAGA+TGG | - | chr6_4:57209528-57209547 | Msa0991620:intron | 40.0% | |
| ! | TCCTTTTCCTCGGTTTCAAT+AGG | + | chr6_4:57209562-57209581 | None:intergenic | 40.0% |
| ! | CTCTTCTTGTTCCTTTTCCT+CGG | + | chr6_4:57209572-57209591 | None:intergenic | 40.0% |
| AACAAGAAGAGCCAACAGAA+AGG | - | chr6_4:57209581-57209600 | Msa0991620:intron | 40.0% | |
| ! | ATACCTGATTTGAAGAGCAC+GGG | + | chr6_4:57209662-57209681 | None:intergenic | 40.0% |
| AAGTATGAATGCACCTGTCA+TGG | - | chr6_4:57209779-57209798 | Msa0991620:intron | 40.0% | |
| AAAGTTTCTCGTACCTCAAG+CGG | + | chr6_4:57209828-57209847 | None:intergenic | 40.0% | |
| CTGCATTTGAGTATGTCTGA+AGG | - | chr6_4:57209890-57209909 | Msa0991620:CDS | 40.0% | |
| CATATGTCGGTATAGACTAG+TGG | - | chr6_4:57210005-57210024 | Msa0991620:intron | 40.0% | |
| ATAGACTAGTGGCCTTCATA+TGG | - | chr6_4:57210016-57210035 | Msa0991620:intron | 40.0% | |
| TAGTGGCCTTCATATGGAAT+TGG | - | chr6_4:57210022-57210041 | Msa0991620:intron | 40.0% | |
| AGTGGCCTTCATATGGAATT+GGG | - | chr6_4:57210023-57210042 | Msa0991620:intron | 40.0% | |
| CTTTCCCCAATTCCATATGA+AGG | + | chr6_4:57210031-57210050 | None:intergenic | 40.0% | |
| !! | TGTCCTTGACTTGCTAACTA+TGG | - | chr6_4:57210113-57210132 | Msa0991620:intron | 40.0% |
| CATCCATAGTTAGCAAGTCA+AGG | + | chr6_4:57210119-57210138 | None:intergenic | 40.0% | |
| !! | TGACTTGCTAACTATGGATG+TGG | - | chr6_4:57210119-57210138 | Msa0991620:intron | 40.0% |
| !! | TTAGTTTCCTAGAAGGTACC+TGG | - | chr6_4:57210157-57210176 | Msa0991620:intron | 40.0% |
| ATATAGACCAGGTACCTTCT+AGG | + | chr6_4:57210167-57210186 | None:intergenic | 40.0% | |
| ! | ACTGCTAAAGTGCTCATGTA+TGG | - | chr6_4:57210212-57210231 | Msa0991620:intron | 40.0% |
| ! | CTGCTAAAGTGCTCATGTAT+GGG | - | chr6_4:57210213-57210232 | Msa0991620:intron | 40.0% |
| !! | ATATGGTATTGGCCATCCAA+AGG | + | chr6_4:57210647-57210666 | None:intergenic | 40.0% |
| TTTCTCTCGAAGCTCTTTCA+TGG | + | chr6_4:57210814-57210833 | None:intergenic | 40.0% | |
| !!! | TAGTTTTGGAAAGGGTTGAG+TGG | - | chr6_4:57210921-57210940 | Msa0991620:intron | 40.0% |
| ACAGAAAACGCATGACATGA+AGG | + | chr6_4:57210972-57210991 | None:intergenic | 40.0% | |
| TTGTGCAGCTATGAAGATTG+GGG | - | chr6_4:57211002-57211021 | Msa0991620:intron | 40.0% | |
| !! | GGGAGTTGATGAATTGATTG+TGG | - | chr6_4:57211022-57211041 | Msa0991620:intron | 40.0% |
| CATAAACTTGACCTGTAGTG+TGG | - | chr6_4:57211130-57211149 | Msa0991620:intron | 40.0% | |
| CAACATTAGTACCACACTAC+AGG | + | chr6_4:57211144-57211163 | None:intergenic | 40.0% | |
| CTGTAGTGTGGTACTAATGT+TGG | - | chr6_4:57211142-57211161 | Msa0991620:intron | 40.0% | |
| CAAGTCATTGTAGTCGTCGT+CGG | + | chr6_4:57208248-57208267 | None:intergenic | 45.0% | |
| !! | TGAACTATGAAGCACCGACA+CGG | - | chr6_4:57209041-57209060 | Msa0991620:intron | 45.0% |
| TACTACCAGTGTCAACGTGT+CGG | + | chr6_4:57209081-57209100 | None:intergenic | 45.0% | |
| !! | TGTCGGTGTCGTGTTGATAT+CGG | - | chr6_4:57209141-57209160 | Msa0991620:intron | 45.0% |
| GACAACAATGATGAGATGGC+TGG | - | chr6_4:57209532-57209551 | Msa0991620:intron | 45.0% | |
| GCCTATTGAAACCGAGGAAA+AGG | - | chr6_4:57209558-57209577 | Msa0991620:intron | 45.0% | |
| ! | TATGAGCGTGCACGGATTTT+GGG | - | chr6_4:57209634-57209653 | Msa0991620:intron | 45.0% |
| !! | CTGTCATGGTTGAGTTGGAA+GGG | - | chr6_4:57209793-57209812 | Msa0991620:intron | 45.0% |
| !! | TGTCATGGTTGAGTTGGAAG+GGG | - | chr6_4:57209794-57209813 | Msa0991620:intron | 45.0% |
| AAGTTTCTCGTACCTCAAGC+GGG | + | chr6_4:57209827-57209846 | None:intergenic | 45.0% | |
| GTGGCCTTCATATGGAATTG+GGG | - | chr6_4:57210024-57210043 | Msa0991620:intron | 45.0% | |
| AGTCAAGGACACCGTTAACT+GGG | + | chr6_4:57210104-57210123 | None:intergenic | 45.0% | |
| AAGTCAAGGACACCGTTAAC+TGG | + | chr6_4:57210105-57210124 | None:intergenic | 45.0% | |
| AGAGTGGTTCTCTTGTGAGA+TGG | - | chr6_4:57210302-57210321 | Msa0991620:intron | 45.0% | |
| TCTTTCATTTACAGGGGCCA+GGG | + | chr6_4:57210414-57210433 | None:intergenic | 45.0% | |
| ATCTTTCATTTACAGGGGCC+AGG | + | chr6_4:57210415-57210434 | None:intergenic | 45.0% | |
| AAGTAACGACGGATCGTGAA+GGG | + | chr6_4:57210843-57210862 | None:intergenic | 45.0% | |
| TTCCATCAGGCAAGTAACGA+CGG | + | chr6_4:57210854-57210873 | None:intergenic | 45.0% | |
| TTGTGGAAGACTCATGGAAG+AGG | - | chr6_4:57211039-57211058 | Msa0991620:intron | 45.0% | |
| GACTCATGGAAGAGGCAAAT+TGG | - | chr6_4:57211047-57211066 | Msa0991620:intron | 45.0% | |
| TCATGGAAGAGGCAAATTGG+TGG | - | chr6_4:57211050-57211069 | Msa0991620:intron | 45.0% | |
| !! | GGCAAATTGGTGGTGATTGA+TGG | - | chr6_4:57211060-57211079 | Msa0991620:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTTAGTTT+TGG | - | chr6_4:57210907-57210926 | Msa0991620:intron | 5.0% |
| CGACGACGACTACAATGACT+TGG | - | chr6_4:57208246-57208265 | Msa0991620:three_prime_UTR | 50.0% | |
| ! | TAGACGTGTCGGTGCTTCAT+AGG | + | chr6_4:57208607-57208626 | None:intergenic | 50.0% |
| !! | CATGTGTTGGTGTTGGACAC+CGG | - | chr6_4:57208670-57208689 | Msa0991620:CDS | 50.0% |
| CACCAACACCTCTGATTGTC+CGG | + | chr6_4:57208692-57208711 | None:intergenic | 50.0% | |
| TGTCAGTGTTGTGTCCGTGT+CGG | + | chr6_4:57209058-57209077 | None:intergenic | 50.0% | |
| ! | GCACTGACACATCTGATCGA+AGG | + | chr6_4:57209196-57209215 | None:intergenic | 50.0% |
| !! | TGGTTGATAGGAAGGTGCAG+AGG | - | chr6_4:57209492-57209511 | Msa0991620:intron | 50.0% |
| ! | TTGATAGGAAGGTGCAGAGG+TGG | - | chr6_4:57209495-57209514 | Msa0991620:intron | 50.0% |
| TGGAGAGCCTATTGAAACCG+AGG | - | chr6_4:57209552-57209571 | Msa0991620:intron | 50.0% | |
| GTCTTTCGAGGCCTTTCTGT+TGG | + | chr6_4:57209595-57209614 | None:intergenic | 50.0% | |
| TGACCAAGTATGAGCGTGCA+CGG | - | chr6_4:57209626-57209645 | Msa0991620:intron | 50.0% | |
| AATCCGTGCACGCTCATACT+TGG | + | chr6_4:57209632-57209651 | None:intergenic | 50.0% | |
| ! | GTATGAGCGTGCACGGATTT+TGG | - | chr6_4:57209633-57209652 | Msa0991620:intron | 50.0% |
| GTACCCGTGCTCTTCAAATC+AGG | - | chr6_4:57209656-57209675 | Msa0991620:intron | 50.0% | |
| TGCACCTGTCATGGTTGAGT+TGG | - | chr6_4:57209788-57209807 | Msa0991620:intron | 50.0% | |
| CCTTCCAACTCAACCATGAC+AGG | + | chr6_4:57209795-57209814 | None:intergenic | 50.0% | |
| !! | CCTGTCATGGTTGAGTTGGA+AGG | - | chr6_4:57209792-57209811 | Msa0991620:intron | 50.0% |
| GTGACCTTCTCCCCAGTTAA+CGG | - | chr6_4:57210090-57210109 | Msa0991620:CDS | 50.0% | |
| GTCAAGGACACCGTTAACTG+GGG | + | chr6_4:57210103-57210122 | None:intergenic | 50.0% | |
| AGTTCATGTTTCCTCTGCCC+TGG | - | chr6_4:57210394-57210413 | Msa0991620:intron | 50.0% | |
| CAAGTAACGACGGATCGTGA+AGG | + | chr6_4:57210844-57210863 | None:intergenic | 50.0% | |
| ATCCGTCGTTACTTGCCTGA+TGG | - | chr6_4:57210849-57210868 | Msa0991620:intron | 50.0% | |
| GTCGTTACTTGCCTGATGGA+AGG | - | chr6_4:57210853-57210872 | Msa0991620:intron | 50.0% | |
| ACAAGCGGAGCTTCAGCGTA+AGG | - | chr6_4:57208205-57208224 | Msa0991620:three_prime_UTR | 55.0% | |
| CAAGCGGAGCTTCAGCGTAA+GGG | - | chr6_4:57208206-57208225 | Msa0991620:three_prime_UTR | 55.0% | |
| !! | AAGCACCGACACGTCTACAC+TGG | - | chr6_4:57208610-57208629 | Msa0991620:intron | 55.0% |
| GTTGGACACCGGACAATCAG+AGG | - | chr6_4:57208681-57208700 | Msa0991620:intron | 55.0% | |
| ! | CACCGGACAATCAGAGGTGT+TGG | - | chr6_4:57208687-57208706 | Msa0991620:intron | 55.0% |
| !! | CAGAGGTGTTGGTGCTACAG+AGG | - | chr6_4:57208698-57208717 | Msa0991620:intron | 55.0% |
| TGACACCGACACGTTGACAC+TGG | - | chr6_4:57209073-57209092 | Msa0991620:intron | 55.0% | |
| ! | CATCTGATCGAAGGCGTGTC+TGG | + | chr6_4:57209187-57209206 | None:intergenic | 55.0% |
| GACACCGTTAACTGGGGAGA+AGG | + | chr6_4:57210097-57210116 | None:intergenic | 55.0% | |
| AGGGGAAACTGACCCGCTTG+AGG | - | chr6_4:57209812-57209831 | Msa0991620:intron | 60.0% | |
| ATTTACAGGGGCCAGGGCAG+AGG | + | chr6_4:57210408-57210427 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 57208183 | 57211313 | 57208183 | ID=Msa0991620;Name=Msa0991620 |
| chr6_4 | mRNA | 57208183 | 57211313 | 57208183 | ID=Msa0991620-mRNA-1;Parent=Msa0991620;Name=Msa0991620-mRNA-1;_AED=0.10;_eAED=0.10;_QI=58|1|1|1|1|1|6|234|144 |
| chr6_4 | exon | 57208183 | 57208486 | 57208183 | ID=Msa0991620-mRNA-1:exon:11451;Parent=Msa0991620-mRNA-1 |
| chr6_4 | exon | 57208622 | 57208689 | 57208622 | ID=Msa0991620-mRNA-1:exon:11450;Parent=Msa0991620-mRNA-1 |
| chr6_4 | exon | 57209663 | 57209714 | 57209663 | ID=Msa0991620-mRNA-1:exon:11449;Parent=Msa0991620-mRNA-1 |
| chr6_4 | exon | 57209819 | 57209994 | 57209819 | ID=Msa0991620-mRNA-1:exon:11448;Parent=Msa0991620-mRNA-1 |
| chr6_4 | exon | 57210086 | 57210119 | 57210086 | ID=Msa0991620-mRNA-1:exon:11447;Parent=Msa0991620-mRNA-1 |
| chr6_4 | exon | 57211221 | 57211313 | 57211221 | ID=Msa0991620-mRNA-1:exon:11446;Parent=Msa0991620-mRNA-1 |
| chr6_4 | five_prime_UTR | 57211256 | 57211313 | 57211256 | ID=Msa0991620-mRNA-1:five_prime_utr;Parent=Msa0991620-mRNA-1 |
| chr6_4 | CDS | 57211221 | 57211255 | 57211221 | ID=Msa0991620-mRNA-1:cds;Parent=Msa0991620-mRNA-1 |
| chr6_4 | CDS | 57210086 | 57210119 | 57210086 | ID=Msa0991620-mRNA-1:cds;Parent=Msa0991620-mRNA-1 |
| chr6_4 | CDS | 57209819 | 57209994 | 57209819 | ID=Msa0991620-mRNA-1:cds;Parent=Msa0991620-mRNA-1 |
| chr6_4 | CDS | 57209663 | 57209714 | 57209663 | ID=Msa0991620-mRNA-1:cds;Parent=Msa0991620-mRNA-1 |
| chr6_4 | CDS | 57208622 | 57208689 | 57208622 | ID=Msa0991620-mRNA-1:cds;Parent=Msa0991620-mRNA-1 |
| chr6_4 | CDS | 57208417 | 57208486 | 57208417 | ID=Msa0991620-mRNA-1:cds;Parent=Msa0991620-mRNA-1 |
| chr6_4 | three_prime_UTR | 57208183 | 57208416 | 57208183 | ID=Msa0991620-mRNA-1:three_prime_utr;Parent=Msa0991620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
