Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257450 | XP_003618578.2 | 100.000 | 65 | 0 | 0 | 1 | 65 | 1 | 65 | 7.24e-38 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257450 | sp|P46302|RS28_MAIZE | 90.769 | 65 | 6 | 0 | 1 | 65 | 1 | 65 | 1.10e-35 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257450 | A0A1S2XHG9 | 100.000 | 65 | 0 | 0 | 1 | 65 | 1 | 65 | 3.46e-38 | 130 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0257450 | 0.878057 | 3.820552e-69 | -8.615850e-47 |
| Msa0002790 | Msa0257450 | 0.873389 | 1.526875e-67 | -8.615850e-47 |
| Msa0032780 | Msa0257450 | 0.810981 | 8.797107e-51 | -8.615850e-47 |
| Msa0044890 | Msa0257450 | 0.843715 | 1.181525e-58 | -8.615850e-47 |
| Msa0049690 | Msa0257450 | 0.807487 | 4.935133e-50 | -8.615850e-47 |
| Msa0068970 | Msa0257450 | 0.836049 | 1.175165e-56 | -8.615850e-47 |
| Msa0074030 | Msa0257450 | 0.811185 | 7.945480e-51 | -8.615850e-47 |
| Msa0085780 | Msa0257450 | 0.811943 | 5.436571e-51 | -8.615850e-47 |
| Msa0086750 | Msa0257450 | 0.806173 | 9.352851e-50 | -8.615850e-47 |
| Msa0116670 | Msa0257450 | 0.830577 | 2.716164e-55 | -8.615850e-47 |
| Msa0133540 | Msa0257450 | 0.805573 | 1.250874e-49 | -8.615850e-47 |
| Msa0140850 | Msa0257450 | 0.817721 | 2.846985e-52 | -8.615850e-47 |
| Msa0172900 | Msa0257450 | 0.800380 | 1.481050e-48 | -8.615850e-47 |
| Msa0173530 | Msa0257450 | 0.832682 | 8.221658e-56 | -8.615850e-47 |
| Msa0181490 | Msa0257450 | 0.806633 | 7.482105e-50 | -8.615850e-47 |
| Msa0183090 | Msa0257450 | 0.867833 | 1.022147e-65 | -8.615850e-47 |
| Msa0189700 | Msa0257450 | 0.839659 | 1.388608e-57 | -8.615850e-47 |
| Msa0210330 | Msa0257450 | 0.838114 | 3.485053e-57 | -8.615850e-47 |
| Msa0210360 | Msa0257450 | 0.849986 | 2.273105e-60 | -8.615850e-47 |
| Msa0217620 | Msa0257450 | 0.843665 | 1.218616e-58 | -8.615850e-47 |
| Msa0221030 | Msa0257450 | 0.826685 | 2.368868e-54 | -8.615850e-47 |
| Msa0232010 | Msa0257450 | 0.833890 | 4.111566e-56 | -8.615850e-47 |
| Msa0232080 | Msa0257450 | 0.831381 | 1.723675e-55 | -8.615850e-47 |
| Msa0250820 | Msa0257450 | 0.840795 | 7.009401e-58 | -8.615850e-47 |
| Msa0257450 | Msa0296720 | 0.938736 | 4.105317e-99 | -8.615850e-47 |
| Msa0257450 | Msa0306690 | 0.802380 | 5.766944e-49 | -8.615850e-47 |
| Msa0257450 | Msa0327300 | 0.811657 | 6.274123e-51 | -8.615850e-47 |
| Msa0257450 | Msa0327330 | 0.814361 | 1.602140e-51 | -8.615850e-47 |
| Msa0257450 | Msa0341880 | 0.846627 | 1.928568e-59 | -8.615850e-47 |
| Msa0257450 | Msa0471880 | 0.822981 | 1.770967e-53 | -8.615850e-47 |
| Msa0257450 | Msa0481850 | 0.820367 | 7.119492e-53 | -8.615850e-47 |
| Msa0257450 | Msa0486070 | 0.835086 | 2.058430e-56 | -8.615850e-47 |
| Msa0257450 | Msa0521050 | 0.801704 | 7.942127e-49 | -8.615850e-47 |
| Msa0257450 | Msa0550420 | 0.808536 | 2.951313e-50 | -8.615850e-47 |
| Msa0257450 | Msa0584030 | 0.839682 | 1.368845e-57 | -8.615850e-47 |
| Msa0257450 | Msa0588360 | 0.810715 | 1.004279e-50 | -8.615850e-47 |
| Msa0257450 | Msa0625570 | 0.802167 | 6.379141e-49 | -8.615850e-47 |
| Msa0257450 | Msa0698780 | 0.807493 | 4.919973e-50 | -8.615850e-47 |
| Msa0257450 | Msa0705800 | 0.805714 | 1.168436e-49 | -8.615850e-47 |
| Msa0257450 | Msa0712610 | 0.849277 | 3.585344e-60 | -8.615850e-47 |
| Msa0257450 | Msa0729200 | 0.828925 | 6.853611e-55 | -8.615850e-47 |
| Msa0257450 | Msa0769590 | 0.826102 | 3.261768e-54 | -8.615850e-47 |
| Msa0257450 | Msa0785130 | 0.800253 | 1.572045e-48 | -8.615850e-47 |
| Msa0257450 | Msa0792420 | 0.843672 | 1.212958e-58 | -8.615850e-47 |
| Msa0257450 | Msa0806880 | 0.819053 | 1.421541e-52 | -8.615850e-47 |
| Msa0257450 | Msa0817540 | 0.823764 | 1.161834e-53 | -8.615850e-47 |
| Msa0257450 | Msa0881290 | 0.838771 | 2.359631e-57 | -8.615850e-47 |
| Msa0257450 | Msa0888810 | 0.853292 | 2.631249e-61 | -8.615850e-47 |
| Msa0257450 | Msa0915540 | 0.819833 | 9.434298e-53 | -8.615850e-47 |
| Msa0257450 | Msa0991620 | 0.802499 | 5.449582e-49 | -8.615850e-47 |
| Msa0257450 | Msa1037290 | 0.815643 | 8.321492e-52 | -8.615850e-47 |
| Msa0257450 | Msa1078870 | 0.852987 | 3.217019e-61 | -8.615850e-47 |
| Msa0257450 | Msa1078980 | 0.824918 | 6.221435e-54 | -8.615850e-47 |
| Msa0257450 | Msa1080350 | 0.847685 | 9.889603e-60 | -8.615850e-47 |
| Msa0257450 | Msa1088490 | 0.841004 | 6.181087e-58 | -8.615850e-47 |
| Msa0257450 | Msa1125860 | 0.848758 | 4.997088e-60 | -8.615850e-47 |
| Msa0257450 | Msa1126060 | 0.840865 | 6.720792e-58 | -8.615850e-47 |
| Msa0257450 | Msa1167540 | 0.821132 | 4.750198e-53 | -8.615850e-47 |
| Msa0257450 | Msa1167550 | 0.804430 | 2.168196e-49 | -8.615850e-47 |
| Msa0257450 | Msa1169180 | 0.820204 | 7.762072e-53 | -8.615850e-47 |
| Msa0257450 | Msa1215820 | 0.880181 | 6.780072e-70 | -8.615850e-47 |
| Msa0257450 | Msa1256840 | 0.861197 | 1.215417e-63 | -8.615850e-47 |
| Msa0257450 | Msa1311400 | 0.857916 | 1.178229e-62 | -8.615850e-47 |
| Msa0257450 | Msa1321790 | 0.850977 | 1.197416e-60 | -8.615850e-47 |
| Msa0257450 | Msa1332250 | 0.825862 | 3.717990e-54 | -8.615850e-47 |
| Msa0257450 | Msa1338190 | 0.877425 | 6.351856e-69 | -8.615850e-47 |
| Msa0257450 | Msa1343260 | 0.847166 | 1.373154e-59 | -8.615850e-47 |
| Msa0257450 | Msa1356790 | 0.855824 | 4.868622e-62 | -8.615850e-47 |
| Msa0257450 | Msa1364480 | 0.819034 | 1.435676e-52 | -8.615850e-47 |
| Msa0257450 | Msa1366180 | 0.834776 | 2.465194e-56 | -8.615850e-47 |
| Msa0257450 | Msa1368920 | 0.814627 | 1.399310e-51 | -8.615850e-47 |
| Msa0257450 | Msa1392590 | 0.817022 | 4.089739e-52 | -8.615850e-47 |
| Msa0257450 | Msa1397100 | 0.824663 | 7.142977e-54 | -8.615850e-47 |
| Msa0257450 | Msa1403910 | 0.800583 | 1.346642e-48 | -8.615850e-47 |
| Msa0257450 | Msa1413500 | 0.818677 | 1.729947e-52 | -8.615850e-47 |
| Msa0257450 | Msa1418770 | 0.809453 | 1.878209e-50 | -8.615850e-47 |
| Msa0257450 | Msa1426120 | 0.856509 | 3.066741e-62 | -8.615850e-47 |
| Msa0257450 | Msa1426370 | 0.839340 | 1.680253e-57 | -8.615850e-47 |
| Msa0257450 | Msa1426490 | 0.851552 | 8.241827e-61 | -8.615850e-47 |
| Msa0257450 | Msa1437280 | 0.812393 | 4.337549e-51 | -8.615850e-47 |
| Msa0257450 | Msa1456050 | 0.831664 | 1.468841e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257450 | MtrunA17_Chr6g0453811 | 100.000 | 65 | 0 | 0 | 1 | 65 | 1 | 65 | 6.66e-42 | 130 |
| Msa0257450 | MtrunA17_Chr4g0041861 | 90.769 | 65 | 6 | 0 | 1 | 65 | 1 | 65 | 3.30e-37 | 118 |
| Msa0257450 | MtrunA17_Chr6g0453911 | 81.538 | 65 | 11 | 1 | 1 | 65 | 1 | 64 | 1.49e-31 | 103 |
| Msa0257450 | MtrunA17_Chr8g0381481 | 83.673 | 49 | 8 | 0 | 1 | 49 | 1 | 49 | 8.05e-25 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257450 | AT5G03850.1 | 90.769 | 65 | 5 | 1 | 1 | 65 | 1 | 64 | 1.33e-35 | 114 |
| Msa0257450 | AT3G10090.1 | 90.769 | 65 | 5 | 1 | 1 | 65 | 1 | 64 | 1.33e-35 | 114 |
| Msa0257450 | AT5G64140.1 | 89.231 | 65 | 6 | 1 | 1 | 65 | 1 | 64 | 1.14e-34 | 112 |
Find 36 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAAGTTGGTTGCTAAAA+TGG | 0.117951 | 2_2:+53336506 | None:intergenic |
| ACCTGCTATTCAAGGAAATT+AGG | 0.247464 | 2_2:+53335095 | None:intergenic |
| TGATTGATATTTGATTAGTT+TGG | 0.323942 | 2_2:-53335064 | Msa0257450:three_prime_UTR |
| TTCTTATAACCTGCTATTCA+AGG | 0.363273 | 2_2:+53335087 | None:intergenic |
| ACCTAATTTCCTTGAATAGC+AGG | 0.397759 | 2_2:-53335096 | Msa0257450:three_prime_UTR |
| GCTGTTGTTGTGAAAGTTAT+GGG | 0.420809 | 2_2:-53335548 | Msa0257450:CDS |
| AGGATGTCTCCCTCCCTAAC+TGG | 0.425936 | 2_2:+53335437 | None:intergenic |
| TGCTGTTGTTGTGAAAGTTA+TGG | 0.441002 | 2_2:-53335549 | Msa0257450:CDS |
| TTATGGGTCGTACTGGATCC+AGG | 0.451262 | 2_2:-53335532 | Msa0257450:CDS |
| AACCTGAGTGACTTGTCCCC+TGG | 0.461687 | 2_2:+53335514 | None:intergenic |
| GAATGTGAAGGGACCAGTTA+GGG | 0.464736 | 2_2:-53335450 | Msa0257450:CDS |
| AGCTCTTAAAACTGTTGTGT+TGG | 0.468388 | 2_2:-53335314 | Msa0257450:three_prime_UTR |
| TGTGACTTAGATATAAAATC+TGG | 0.471929 | 2_2:-53335186 | Msa0257450:three_prime_UTR |
| GGAATGTGAAGGGACCAGTT+AGG | 0.473428 | 2_2:-53335451 | Msa0257450:CDS |
| TAAAATGGAAAGTGCAGAAT+CGG | 0.485027 | 2_2:+53336521 | None:intergenic |
| TCTCAGACTCGAGGAGGGTA+AGG | 0.488938 | 2_2:+53335417 | None:intergenic |
| AGGAAATTAGGTTTGAGACT+TGG | 0.499121 | 2_2:+53335107 | None:intergenic |
| TATATGTTGTTCAATATGTC+AGG | 0.499645 | 2_2:-53335163 | Msa0257450:three_prime_UTR |
| GAGAGAAACGAACTTGAAGT+TGG | 0.505451 | 2_2:+53336494 | None:intergenic |
| GTGAAAGTTATGGGTCGTAC+TGG | 0.530087 | 2_2:-53335539 | Msa0257450:CDS |
| GCGAAGAAGCTAGCTGCGTA+TGG | 0.560787 | 2_2:+53336559 | None:intergenic |
| TGTGAAGGGACCAGTTAGGG+AGG | 0.582336 | 2_2:-53335447 | Msa0257450:CDS |
| ATCAGAATCGTCACATCATG+AGG | 0.584464 | 2_2:-53335472 | Msa0257450:CDS |
| TTGCTTCTCTCTCAGACTCG+AGG | 0.586554 | 2_2:+53335408 | None:intergenic |
| AAACATCGAGACTCTTCTAT+CGG | 0.589119 | 2_2:+53335378 | None:intergenic |
| CTTCTCTCTCAGACTCGAGG+AGG | 0.606831 | 2_2:+53335411 | None:intergenic |
| TATGGGTCGTACTGGATCCA+GGG | 0.613108 | 2_2:-53335531 | Msa0257450:CDS |
| GGAAAGTGCAGAATCGGCGT+GGG | 0.619085 | 2_2:+53336527 | None:intergenic |
| TCACATCATGAGGAATGTGA+AGG | 0.626309 | 2_2:-53335462 | Msa0257450:CDS |
| TGGAAAGTGCAGAATCGGCG+TGG | 0.632732 | 2_2:+53336526 | None:intergenic |
| CACATCATGAGGAATGTGAA+GGG | 0.632733 | 2_2:-53335461 | Msa0257450:CDS |
| ATCCAGGGGACAAGTCACTC+AGG | 0.638739 | 2_2:-53335516 | Msa0257450:CDS |
| TTCTCTCTCAGACTCGAGGA+GGG | 0.644799 | 2_2:+53335412 | None:intergenic |
| GTGAAGGGACCAGTTAGGGA+GGG | 0.647685 | 2_2:-53335446 | Msa0257450:CDS |
| ATGCTGTCTTGTTTATACGA+TGG | 0.664216 | 2_2:-53335135 | Msa0257450:three_prime_UTR |
| ATGGGTCGTACTGGATCCAG+GGG | 0.674814 | 2_2:-53335530 | Msa0257450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTGTTTTAATTAATGA+AGG | - | chr2_2:53336409-53336428 | Msa0257450:intron | 10.0% |
| !!! | TATTTGTTTTAATTAATGAA+GGG | - | chr2_2:53336410-53336429 | Msa0257450:intron | 10.0% |
| !!! | TTATTTGTTTTAATTAATGA+AGG | - | chr2_2:53336409-53336428 | Msa0257450:intron | 10.0% |
| !!! | TATTTGTTTTAATTAATGAA+GGG | - | chr2_2:53336410-53336429 | Msa0257450:intron | 10.0% |
| !! | TAGTTTAATAAAAATCAAAG+AGG | + | chr2_2:53335786-53335805 | None:intergenic | 15.0% |
| !! | AAATTATGATTTAAATAGTC+TGG | - | chr2_2:53335895-53335914 | Msa0257450:intron | 15.0% |
| !! | TAGTTTAATAAAAATCAAAG+AGG | + | chr2_2:53335786-53335805 | None:intergenic | 15.0% |
| !! | AAATTATGATTTAAATAGTC+TGG | - | chr2_2:53335895-53335914 | Msa0257450:intron | 15.0% |
| !! | GCTAAAAATATAGATCAATA+AGG | + | chr2_2:53335189-53335208 | None:intergenic | 20.0% |
| !!! | GATTTTTTTTTGGTTGATTT+AGG | - | chr2_2:53335264-53335283 | Msa0257450:three_prime_UTR | 20.0% |
| !! | AGTTAAAAAAGTCATTTCTA+AGG | + | chr2_2:53335587-53335606 | None:intergenic | 20.0% |
| !!! | ATCAACTTCACTTTATTTTT+TGG | + | chr2_2:53335862-53335881 | None:intergenic | 20.0% |
| !!! | TGATTGATATTTGATTAGTT+TGG | - | chr2_2:53336572-53336591 | Msa0257450:five_prime_UTR | 20.0% |
| !! | GCTAAAAATATAGATCAATA+AGG | + | chr2_2:53335189-53335208 | None:intergenic | 20.0% |
| !!! | GATTTTTTTTTGGTTGATTT+AGG | - | chr2_2:53335264-53335283 | Msa0257450:three_prime_UTR | 20.0% |
| !! | AGTTAAAAAAGTCATTTCTA+AGG | + | chr2_2:53335587-53335606 | None:intergenic | 20.0% |
| !!! | ATCAACTTCACTTTATTTTT+TGG | + | chr2_2:53335862-53335881 | None:intergenic | 20.0% |
| !!! | TTTTTTTGGTTGATTTAGGT+TGG | - | chr2_2:53335268-53335287 | Msa0257450:three_prime_UTR | 25.0% |
| !! | TTTAAAATGTGTGAAAGATG+AGG | - | chr2_2:53335438-53335457 | Msa0257450:CDS | 25.0% |
| !! | TGATTGCTATTAATTGTGTT+TGG | - | chr2_2:53335618-53335637 | Msa0257450:intron | 25.0% |
| !!! | TTGATTGCTTATTTTGTGTT+TGG | - | chr2_2:53335811-53335830 | Msa0257450:intron | 25.0% |
| !!! | GATAAAAAAGTGTTTTTCAG+TGG | - | chr2_2:53335931-53335950 | Msa0257450:intron | 25.0% |
| ! | ACACATTCACAATTGTTAAT+AGG | + | chr2_2:53336034-53336053 | None:intergenic | 25.0% |
| ! | TGTGACTTAGATATAAAATC+TGG | - | chr2_2:53336450-53336469 | Msa0257450:intron | 25.0% |
| ! | TATATGTTGTTCAATATGTC+AGG | - | chr2_2:53336473-53336492 | Msa0257450:intron | 25.0% |
| !!! | TTGATATTTGATTAGTTTGG+AGG | - | chr2_2:53336575-53336594 | Msa0257450:five_prime_UTR | 25.0% |
| !!! | TTTTTTTGGTTGATTTAGGT+TGG | - | chr2_2:53335268-53335287 | Msa0257450:three_prime_UTR | 25.0% |
| !! | TTTAAAATGTGTGAAAGATG+AGG | - | chr2_2:53335438-53335457 | Msa0257450:CDS | 25.0% |
| !! | TGATTGCTATTAATTGTGTT+TGG | - | chr2_2:53335618-53335637 | Msa0257450:intron | 25.0% |
| !!! | TTGATTGCTTATTTTGTGTT+TGG | - | chr2_2:53335811-53335830 | Msa0257450:intron | 25.0% |
| !!! | GATAAAAAAGTGTTTTTCAG+TGG | - | chr2_2:53335931-53335950 | Msa0257450:intron | 25.0% |
| ! | ACACATTCACAATTGTTAAT+AGG | + | chr2_2:53336034-53336053 | None:intergenic | 25.0% |
| ! | TGTGACTTAGATATAAAATC+TGG | - | chr2_2:53336450-53336469 | Msa0257450:intron | 25.0% |
| ! | TATATGTTGTTCAATATGTC+AGG | - | chr2_2:53336473-53336492 | Msa0257450:intron | 25.0% |
| ! | TAAAATGGAAAGTGCAGAAT+CGG | + | chr2_2:53335118-53335137 | None:intergenic | 30.0% |
| TTCTTATAACCTGCTATTCA+AGG | + | chr2_2:53336552-53336571 | None:intergenic | 30.0% | |
| ! | TAAAATGGAAAGTGCAGAAT+CGG | + | chr2_2:53335118-53335137 | None:intergenic | 30.0% |
| TTCTTATAACCTGCTATTCA+AGG | + | chr2_2:53336552-53336571 | None:intergenic | 30.0% | |
| ! | CTTGAAGTTGGTTGCTAAAA+TGG | + | chr2_2:53335133-53335152 | None:intergenic | 35.0% |
| TCAACAAATTAAGCTGAAGC+TGG | + | chr2_2:53335523-53335542 | None:intergenic | 35.0% | |
| CAATTGTTAATAGGAGAGCA+AGG | + | chr2_2:53336025-53336044 | None:intergenic | 35.0% | |
| TGCTGTTGTTGTGAAAGTTA+TGG | - | chr2_2:53336087-53336106 | Msa0257450:intron | 35.0% | |
| GCTGTTGTTGTGAAAGTTAT+GGG | - | chr2_2:53336088-53336107 | Msa0257450:intron | 35.0% | |
| ! | TCAGGTTAGAGTGAAGTTTT+TGG | - | chr2_2:53336138-53336157 | Msa0257450:intron | 35.0% |
| AAACATCGAGACTCTTCTAT+CGG | + | chr2_2:53336261-53336280 | None:intergenic | 35.0% | |
| AGCTCTTAAAACTGTTGTGT+TGG | - | chr2_2:53336322-53336341 | Msa0257450:intron | 35.0% | |
| !! | ATGCTGTCTTGTTTATACGA+TGG | - | chr2_2:53336501-53336520 | Msa0257450:intron | 35.0% |
| ! | AGGAAATTAGGTTTGAGACT+TGG | + | chr2_2:53336532-53336551 | None:intergenic | 35.0% |
| ACCTAATTTCCTTGAATAGC+AGG | - | chr2_2:53336540-53336559 | Msa0257450:five_prime_UTR | 35.0% | |
| ACCTGCTATTCAAGGAAATT+AGG | + | chr2_2:53336544-53336563 | None:intergenic | 35.0% | |
| ! | CTTGAAGTTGGTTGCTAAAA+TGG | + | chr2_2:53335133-53335152 | None:intergenic | 35.0% |
| TCAACAAATTAAGCTGAAGC+TGG | + | chr2_2:53335523-53335542 | None:intergenic | 35.0% | |
| CAATTGTTAATAGGAGAGCA+AGG | + | chr2_2:53336025-53336044 | None:intergenic | 35.0% | |
| TGCTGTTGTTGTGAAAGTTA+TGG | - | chr2_2:53336087-53336106 | Msa0257450:intron | 35.0% | |
| GCTGTTGTTGTGAAAGTTAT+GGG | - | chr2_2:53336088-53336107 | Msa0257450:intron | 35.0% | |
| ! | TCAGGTTAGAGTGAAGTTTT+TGG | - | chr2_2:53336138-53336157 | Msa0257450:intron | 35.0% |
| AAACATCGAGACTCTTCTAT+CGG | + | chr2_2:53336261-53336280 | None:intergenic | 35.0% | |
| AGCTCTTAAAACTGTTGTGT+TGG | - | chr2_2:53336322-53336341 | Msa0257450:intron | 35.0% | |
| !! | ATGCTGTCTTGTTTATACGA+TGG | - | chr2_2:53336501-53336520 | Msa0257450:intron | 35.0% |
| ! | AGGAAATTAGGTTTGAGACT+TGG | + | chr2_2:53336532-53336551 | None:intergenic | 35.0% |
| ACCTAATTTCCTTGAATAGC+AGG | - | chr2_2:53336540-53336559 | Msa0257450:five_prime_UTR | 35.0% | |
| ACCTGCTATTCAAGGAAATT+AGG | + | chr2_2:53336544-53336563 | None:intergenic | 35.0% | |
| GAGAGAAACGAACTTGAAGT+TGG | + | chr2_2:53335145-53335164 | None:intergenic | 40.0% | |
| ATCAGAATCGTCACATCATG+AGG | - | chr2_2:53336164-53336183 | Msa0257450:intron | 40.0% | |
| TCACATCATGAGGAATGTGA+AGG | - | chr2_2:53336174-53336193 | Msa0257450:intron | 40.0% | |
| CACATCATGAGGAATGTGAA+GGG | - | chr2_2:53336175-53336194 | Msa0257450:intron | 40.0% | |
| GAGAGAAACGAACTTGAAGT+TGG | + | chr2_2:53335145-53335164 | None:intergenic | 40.0% | |
| ATCAGAATCGTCACATCATG+AGG | - | chr2_2:53336164-53336183 | Msa0257450:intron | 40.0% | |
| TCACATCATGAGGAATGTGA+AGG | - | chr2_2:53336174-53336193 | Msa0257450:intron | 40.0% | |
| CACATCATGAGGAATGTGAA+GGG | - | chr2_2:53336175-53336194 | Msa0257450:intron | 40.0% | |
| GTGAATGTGTGTGTTTGAGC+AGG | - | chr2_2:53336044-53336063 | Msa0257450:intron | 45.0% | |
| ATGTGTGTGTTTGAGCAGGA+TGG | - | chr2_2:53336048-53336067 | Msa0257450:intron | 45.0% | |
| GTGAAAGTTATGGGTCGTAC+TGG | - | chr2_2:53336097-53336116 | Msa0257450:intron | 45.0% | |
| GAATGTGAAGGGACCAGTTA+GGG | - | chr2_2:53336186-53336205 | Msa0257450:intron | 45.0% | |
| GTGAATGTGTGTGTTTGAGC+AGG | - | chr2_2:53336044-53336063 | Msa0257450:intron | 45.0% | |
| ATGTGTGTGTTTGAGCAGGA+TGG | - | chr2_2:53336048-53336067 | Msa0257450:intron | 45.0% | |
| GTGAAAGTTATGGGTCGTAC+TGG | - | chr2_2:53336097-53336116 | Msa0257450:intron | 45.0% | |
| GAATGTGAAGGGACCAGTTA+GGG | - | chr2_2:53336186-53336205 | Msa0257450:intron | 45.0% | |
| !! | TCAAAATAAAAAAATTAATA+TGG | + | chr2_2:53335246-53335265 | None:intergenic | 5.0% |
| !!! | TTTTTATTTTGATTTTTTTT+TGG | - | chr2_2:53335254-53335273 | Msa0257450:three_prime_UTR | 5.0% |
| !! | TCAAAATAAAAAAATTAATA+TGG | + | chr2_2:53335246-53335265 | None:intergenic | 5.0% |
| !!! | TTTTTATTTTGATTTTTTTT+TGG | - | chr2_2:53335254-53335273 | Msa0257450:three_prime_UTR | 5.0% |
| TTATGGGTCGTACTGGATCC+AGG | - | chr2_2:53336104-53336123 | Msa0257450:intron | 50.0% | |
| TATGGGTCGTACTGGATCCA+GGG | - | chr2_2:53336105-53336124 | Msa0257450:intron | 50.0% | |
| GGAATGTGAAGGGACCAGTT+AGG | - | chr2_2:53336185-53336204 | Msa0257450:intron | 50.0% | |
| TTCTCTCTCAGACTCGAGGA+GGG | + | chr2_2:53336227-53336246 | None:intergenic | 50.0% | |
| TTGCTTCTCTCTCAGACTCG+AGG | + | chr2_2:53336231-53336250 | None:intergenic | 50.0% | |
| TTATGGGTCGTACTGGATCC+AGG | - | chr2_2:53336104-53336123 | Msa0257450:intron | 50.0% | |
| TATGGGTCGTACTGGATCCA+GGG | - | chr2_2:53336105-53336124 | Msa0257450:intron | 50.0% | |
| GGAATGTGAAGGGACCAGTT+AGG | - | chr2_2:53336185-53336204 | Msa0257450:intron | 50.0% | |
| TTCTCTCTCAGACTCGAGGA+GGG | + | chr2_2:53336227-53336246 | None:intergenic | 50.0% | |
| TTGCTTCTCTCTCAGACTCG+AGG | + | chr2_2:53336231-53336250 | None:intergenic | 50.0% | |
| GCGAAGAAGCTAGCTGCGTA+TGG | + | chr2_2:53335080-53335099 | None:intergenic | 55.0% | |
| ! | GGAAAGTGCAGAATCGGCGT+GGG | + | chr2_2:53335112-53335131 | None:intergenic | 55.0% |
| ! | TGGAAAGTGCAGAATCGGCG+TGG | + | chr2_2:53335113-53335132 | None:intergenic | 55.0% |
| ATGGGTCGTACTGGATCCAG+GGG | - | chr2_2:53336106-53336125 | Msa0257450:intron | 55.0% | |
| ATCCAGGGGACAAGTCACTC+AGG | - | chr2_2:53336120-53336139 | Msa0257450:intron | 55.0% | |
| ! | AACCTGAGTGACTTGTCCCC+TGG | + | chr2_2:53336125-53336144 | None:intergenic | 55.0% |
| TGTGAAGGGACCAGTTAGGG+AGG | - | chr2_2:53336189-53336208 | Msa0257450:intron | 55.0% | |
| GTGAAGGGACCAGTTAGGGA+GGG | - | chr2_2:53336190-53336209 | Msa0257450:intron | 55.0% | |
| AGGATGTCTCCCTCCCTAAC+TGG | + | chr2_2:53336202-53336221 | None:intergenic | 55.0% | |
| TCTCAGACTCGAGGAGGGTA+AGG | + | chr2_2:53336222-53336241 | None:intergenic | 55.0% | |
| CTTCTCTCTCAGACTCGAGG+AGG | + | chr2_2:53336228-53336247 | None:intergenic | 55.0% | |
| GCGAAGAAGCTAGCTGCGTA+TGG | + | chr2_2:53335080-53335099 | None:intergenic | 55.0% | |
| ! | GGAAAGTGCAGAATCGGCGT+GGG | + | chr2_2:53335112-53335131 | None:intergenic | 55.0% |
| ! | TGGAAAGTGCAGAATCGGCG+TGG | + | chr2_2:53335113-53335132 | None:intergenic | 55.0% |
| ATGGGTCGTACTGGATCCAG+GGG | - | chr2_2:53336106-53336125 | Msa0257450:intron | 55.0% | |
| ATCCAGGGGACAAGTCACTC+AGG | - | chr2_2:53336120-53336139 | Msa0257450:intron | 55.0% | |
| ! | AACCTGAGTGACTTGTCCCC+TGG | + | chr2_2:53336125-53336144 | None:intergenic | 55.0% |
| TGTGAAGGGACCAGTTAGGG+AGG | - | chr2_2:53336189-53336208 | Msa0257450:intron | 55.0% | |
| GTGAAGGGACCAGTTAGGGA+GGG | - | chr2_2:53336190-53336209 | Msa0257450:intron | 55.0% | |
| AGGATGTCTCCCTCCCTAAC+TGG | + | chr2_2:53336202-53336221 | None:intergenic | 55.0% | |
| TCTCAGACTCGAGGAGGGTA+AGG | + | chr2_2:53336222-53336241 | None:intergenic | 55.0% | |
| CTTCTCTCTCAGACTCGAGG+AGG | + | chr2_2:53336228-53336247 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 53335064 | 53336594 | 53335064 | ID=Msa0257450;Name=Msa0257450 |
| chr2_2 | mRNA | 53335064 | 53336594 | 53335064 | ID=Msa0257450-mRNA-1;Parent=Msa0257450;Name=Msa0257450-mRNA-1;_AED=0.12;_eAED=0.12;_QI=88|0|0.5|1|0|0.5|2|330|65 |
| chr2_2 | exon | 53335064 | 53335591 | 53335064 | ID=Msa0257450-mRNA-1:exon:16029;Parent=Msa0257450-mRNA-1 |
| chr2_2 | exon | 53336507 | 53336594 | 53336507 | ID=Msa0257450-mRNA-1:exon:16028;Parent=Msa0257450-mRNA-1 |
| chr2_2 | five_prime_UTR | 53336507 | 53336594 | 53336507 | ID=Msa0257450-mRNA-1:five_prime_utr;Parent=Msa0257450-mRNA-1 |
| chr2_2 | CDS | 53335394 | 53335591 | 53335394 | ID=Msa0257450-mRNA-1:cds;Parent=Msa0257450-mRNA-1 |
| chr2_2 | three_prime_UTR | 53335064 | 53335393 | 53335064 | ID=Msa0257450-mRNA-1:three_prime_utr;Parent=Msa0257450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
