Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0993020 | XP_003609734.2 | 80.982 | 163 | 18 | 1 | 17 | 166 | 227 | 389 | 7.37e-87 | 272 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0993020 | sp|Q9FJ06|TBL4_ARATH | 52.866 | 157 | 59 | 3 | 24 | 166 | 220 | 375 | 6.46e-47 | 161 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0993020 | G7JMR6 | 80.982 | 163 | 18 | 1 | 17 | 166 | 227 | 389 | 3.52e-87 | 272 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0520750 | Msa0993020 | 0.810624 | 1.050760e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0993020 | MtrunA17_Chr4g0068111 | 80.982 | 163 | 18 | 1 | 17 | 166 | 227 | 389 | 6.78e-91 | 272 |
Msa0993020 | MtrunA17_Chr7g0258851 | 48.077 | 156 | 67 | 2 | 24 | 166 | 367 | 521 | 1.03e-46 | 160 |
Msa0993020 | MtrunA17_Chr1g0175671 | 46.795 | 156 | 69 | 2 | 24 | 166 | 289 | 443 | 1.20e-45 | 156 |
Msa0993020 | MtrunA17_Chr8g0368461 | 48.077 | 156 | 66 | 2 | 24 | 166 | 309 | 462 | 2.81e-44 | 153 |
Msa0993020 | MtrunA17_Chr1g0213281 | 44.304 | 158 | 73 | 3 | 23 | 166 | 293 | 449 | 1.17e-43 | 151 |
Msa0993020 | MtrunA17_Chr5g0413271 | 45.455 | 165 | 73 | 3 | 15 | 166 | 250 | 410 | 1.44e-42 | 147 |
Msa0993020 | MtrunA17_Chr4g0071391 | 40.385 | 156 | 79 | 2 | 24 | 166 | 228 | 382 | 2.27e-35 | 127 |
Msa0993020 | MtrunA17_Chr7g0269991 | 39.490 | 157 | 79 | 3 | 23 | 166 | 255 | 408 | 1.18e-29 | 112 |
Msa0993020 | MtrunA17_Chr3g0105301 | 30.409 | 171 | 92 | 3 | 17 | 166 | 148 | 312 | 1.48e-20 | 87.0 |
Msa0993020 | MtrunA17_Chr7g0259711 | 30.282 | 142 | 86 | 1 | 17 | 145 | 203 | 344 | 2.62e-18 | 80.9 |
Msa0993020 | MtrunA17_Chr2g0287901 | 29.577 | 142 | 87 | 1 | 17 | 145 | 209 | 350 | 6.90e-18 | 79.7 |
Msa0993020 | MtrunA17_Chr1g0171171 | 25.949 | 158 | 103 | 2 | 18 | 166 | 158 | 310 | 6.78e-17 | 76.6 |
Msa0993020 | MtrunA17_Chr3g0126021 | 33.333 | 114 | 76 | 0 | 16 | 129 | 244 | 357 | 7.98e-17 | 76.6 |
Msa0993020 | MtrunA17_Chr4g0045951 | 30.189 | 159 | 86 | 5 | 24 | 166 | 157 | 306 | 3.48e-16 | 74.7 |
Msa0993020 | MtrunA17_Chr1g0210771 | 27.044 | 159 | 101 | 3 | 17 | 166 | 163 | 315 | 4.11e-16 | 74.3 |
Msa0993020 | MtrunA17_Chr5g0430371 | 32.710 | 107 | 66 | 1 | 23 | 129 | 169 | 269 | 8.68e-16 | 73.6 |
Msa0993020 | MtrunA17_Chr8g0384151 | 31.579 | 114 | 78 | 0 | 16 | 129 | 201 | 314 | 2.23e-15 | 72.4 |
Msa0993020 | MtrunA17_Chr2g0314791 | 32.335 | 167 | 93 | 6 | 1 | 156 | 122 | 279 | 3.96e-15 | 71.6 |
Msa0993020 | MtrunA17_Chr4g0045941 | 28.662 | 157 | 91 | 5 | 24 | 166 | 145 | 294 | 4.32e-15 | 71.6 |
Msa0993020 | MtrunA17_Chr2g0283581 | 27.389 | 157 | 93 | 5 | 24 | 166 | 153 | 302 | 4.99e-15 | 71.2 |
Msa0993020 | MtrunA17_Chr2g0314801 | 31.008 | 129 | 73 | 3 | 53 | 166 | 169 | 296 | 8.15e-15 | 70.9 |
Msa0993020 | MtrunA17_Chr4g0006991 | 26.667 | 165 | 93 | 6 | 11 | 154 | 188 | 345 | 8.84e-13 | 65.1 |
Msa0993020 | MtrunA17_Chr2g0325481 | 28.025 | 157 | 92 | 4 | 24 | 166 | 162 | 311 | 9.02e-13 | 65.1 |
Msa0993020 | MtrunA17_Chr4g0005491 | 27.879 | 165 | 98 | 5 | 21 | 166 | 174 | 336 | 4.32e-12 | 63.2 |
Msa0993020 | MtrunA17_Chr5g0413851 | 33.562 | 146 | 73 | 8 | 43 | 166 | 159 | 302 | 9.63e-12 | 62.0 |
Msa0993020 | MtrunA17_Chr7g0242701 | 28.000 | 125 | 77 | 4 | 11 | 129 | 188 | 305 | 4.52e-11 | 60.1 |
Msa0993020 | MtrunA17_Chr3g0097891 | 26.761 | 142 | 82 | 4 | 25 | 151 | 144 | 278 | 7.94e-11 | 59.3 |
Msa0993020 | MtrunA17_Chr1g0209921 | 33.962 | 106 | 59 | 3 | 25 | 129 | 160 | 255 | 9.43e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0993020 | AT5G49340.1 | 52.866 | 157 | 59 | 3 | 24 | 166 | 220 | 375 | 6.56e-48 | 161 |
Msa0993020 | AT3G12060.1 | 46.154 | 156 | 70 | 2 | 24 | 166 | 315 | 469 | 7.96e-46 | 157 |
Msa0993020 | AT5G06700.1 | 44.872 | 156 | 72 | 2 | 24 | 166 | 374 | 528 | 2.66e-44 | 154 |
Msa0993020 | AT1G60790.1 | 47.239 | 163 | 72 | 2 | 17 | 166 | 304 | 465 | 8.96e-43 | 149 |
Msa0993020 | AT5G20590.1 | 39.103 | 156 | 81 | 2 | 24 | 166 | 261 | 415 | 9.84e-36 | 129 |
Msa0993020 | AT3G62390.1 | 38.217 | 157 | 81 | 3 | 23 | 166 | 256 | 409 | 1.07e-32 | 121 |
Msa0993020 | AT3G62390.2 | 42.056 | 107 | 60 | 1 | 23 | 129 | 256 | 360 | 4.21e-26 | 102 |
Msa0993020 | AT5G20590.2 | 42.308 | 104 | 59 | 1 | 24 | 127 | 261 | 363 | 5.43e-26 | 102 |
Msa0993020 | AT5G19160.1 | 34.028 | 144 | 82 | 1 | 24 | 154 | 218 | 361 | 6.12e-24 | 97.4 |
Msa0993020 | AT5G58600.1 | 34.014 | 147 | 73 | 3 | 23 | 151 | 178 | 318 | 9.69e-23 | 93.6 |
Msa0993020 | AT5G19160.2 | 37.736 | 106 | 66 | 0 | 24 | 129 | 218 | 323 | 5.01e-22 | 90.9 |
Msa0993020 | AT5G58600.2 | 37.383 | 107 | 61 | 1 | 23 | 129 | 178 | 278 | 9.34e-21 | 86.7 |
Msa0993020 | AT3G06080.2 | 29.878 | 164 | 101 | 2 | 17 | 166 | 215 | 378 | 2.16e-20 | 87.4 |
Msa0993020 | AT3G11570.1 | 26.380 | 163 | 107 | 1 | 17 | 166 | 194 | 356 | 1.14e-18 | 82.4 |
Msa0993020 | AT3G06080.1 | 33.628 | 113 | 75 | 0 | 17 | 129 | 215 | 327 | 1.16e-18 | 81.6 |
Msa0993020 | AT1G48880.1 | 32.456 | 114 | 77 | 0 | 16 | 129 | 226 | 339 | 6.29e-16 | 74.7 |
Msa0993020 | AT1G78710.1 | 31.250 | 160 | 84 | 5 | 24 | 166 | 149 | 299 | 8.24e-16 | 73.9 |
Msa0993020 | AT5G06230.1 | 28.986 | 138 | 85 | 1 | 28 | 152 | 191 | 328 | 1.25e-15 | 73.6 |
Msa0993020 | AT5G06230.2 | 28.986 | 138 | 85 | 1 | 28 | 152 | 150 | 287 | 1.35e-15 | 73.6 |
Msa0993020 | AT1G29050.1 | 25.786 | 159 | 94 | 4 | 24 | 166 | 173 | 323 | 3.10e-15 | 72.4 |
Msa0993020 | AT2G31110.1 | 26.061 | 165 | 97 | 5 | 18 | 166 | 3 | 158 | 4.59e-14 | 67.4 |
Msa0993020 | AT3G54260.1 | 24.460 | 139 | 94 | 3 | 18 | 150 | 156 | 289 | 1.91e-13 | 67.4 |
Msa0993020 | AT2G30900.1 | 32.500 | 160 | 81 | 6 | 25 | 166 | 158 | 308 | 2.37e-13 | 67.0 |
Msa0993020 | AT2G31110.2 | 26.415 | 159 | 92 | 5 | 24 | 166 | 157 | 306 | 6.56e-13 | 65.9 |
Msa0993020 | AT5G06230.3 | 30.612 | 98 | 68 | 0 | 28 | 125 | 191 | 288 | 2.46e-12 | 63.9 |
Msa0993020 | AT2G30010.1 | 29.825 | 114 | 73 | 2 | 17 | 129 | 163 | 270 | 3.92e-12 | 63.5 |
Msa0993020 | AT2G30010.2 | 24.000 | 175 | 102 | 4 | 17 | 166 | 206 | 374 | 4.84e-12 | 63.5 |
Msa0993020 | AT2G30900.2 | 32.500 | 120 | 66 | 4 | 25 | 138 | 158 | 268 | 6.57e-11 | 59.7 |
Msa0993020 | AT2G42570.1 | 26.115 | 157 | 95 | 5 | 24 | 166 | 159 | 308 | 8.06e-11 | 59.7 |
Find 33 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGATGTTAATTAGGATTA+TGG | 0.236100 | 6_4:-64224475 | Msa0993020:intron |
TTCCATTCTTGTACAAGAAA+TGG | 0.283805 | 6_4:+64224427 | None:intergenic |
CACTGCCCCTTCAGATTCAT+AGG | 0.352061 | 6_4:+64225283 | None:intergenic |
TCCATTCTTGTACAAGAAAT+GGG | 0.352802 | 6_4:+64224428 | None:intergenic |
TGGGGATTTCACAATGTCTA+TGG | 0.361987 | 6_4:+64224447 | None:intergenic |
CCCCATTTCTTGTACAAGAA+TGG | 0.370184 | 6_4:-64224429 | Msa0993020:CDS |
AAGATAGCTTTCATTTGTAA+TGG | 0.380265 | 6_4:+64223875 | None:intergenic |
TTCCTCAAAGAGAAACTCTT+AGG | 0.383679 | 6_4:-64224384 | Msa0993020:CDS |
AGCCTAAGAGTTTCTCTTTG+AGG | 0.395436 | 6_4:+64224382 | None:intergenic |
AGATAGCTTTCATTTGTAAT+GGG | 0.396515 | 6_4:+64223876 | None:intergenic |
AGCTAACATACTTCCTATAA+TGG | 0.399388 | 6_4:+64223800 | None:intergenic |
ATATGTGTGTGATCCATTAT+AGG | 0.428230 | 6_4:-64223813 | Msa0993020:exon |
TCGACAATTCCCATTGTCAA+TGG | 0.442380 | 6_4:+64223843 | None:intergenic |
TGAGCTTCTTGCTGCTAAGC+AGG | 0.466569 | 6_4:-64225257 | Msa0993020:CDS |
GAAACACTAGCGCTAGTCAA+TGG | 0.489892 | 6_4:+64223763 | None:intergenic |
CATTTAAGACATGGGCTAAG+TGG | 0.503496 | 6_4:-64224109 | Msa0993020:CDS |
AACTCTGGAGGTAAATGTGA+TGG | 0.519732 | 6_4:-64223909 | Msa0993020:CDS |
GGCAAACCCTATGAATCTGA+AGG | 0.520434 | 6_4:-64225290 | Msa0993020:CDS |
GCAGCATATCCATTGACAAT+GGG | 0.531435 | 6_4:-64223852 | Msa0993020:CDS |
ATTTAAGACATGGGCTAAGT+GGG | 0.550470 | 6_4:-64224108 | Msa0993020:CDS |
ACTGCCCCTTCAGATTCATA+GGG | 0.561633 | 6_4:+64225284 | None:intergenic |
ACTCTGGAGGTAAATGTGAT+GGG | 0.561757 | 6_4:-64223908 | Msa0993020:CDS |
CCATTCTTGTACAAGAAATG+GGG | 0.584992 | 6_4:+64224429 | None:intergenic |
TACAACAAGCATTTAAGACA+TGG | 0.597685 | 6_4:-64224118 | Msa0993020:CDS |
AGCATCATAATATTGAGACT+TGG | 0.603108 | 6_4:+64224342 | None:intergenic |
TGCAGCATATCCATTGACAA+TGG | 0.605023 | 6_4:-64223853 | Msa0993020:CDS |
GCAAACCCTATGAATCTGAA+GGG | 0.614234 | 6_4:-64225289 | Msa0993020:CDS |
ACAACAAGCATTTAAGACAT+GGG | 0.616597 | 6_4:-64224117 | Msa0993020:CDS |
AGTAGAAACTACTTTCAGCA+AGG | 0.629801 | 6_4:-64224179 | Msa0993020:CDS |
CTCTGGAGGTAAATGTGATG+GGG | 0.640338 | 6_4:-64223907 | Msa0993020:CDS |
CGTGTGCTTGCTATCAACTG+TGG | 0.660073 | 6_4:+64224079 | None:intergenic |
CAAACCCTATGAATCTGAAG+GGG | 0.696980 | 6_4:-64225288 | Msa0993020:CDS |
GCTTCTTGCTGCTAAGCAGG+TGG | 0.701727 | 6_4:-64225254 | Msa0993020:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTGTAATAATATACATATGT+TGG | - | chr6_4:64224195-64224214 | Msa0993020:intron | 15.0% |
!! | ATTATTAATAAGTAGTTCAA+AGG | - | chr6_4:64225059-64225078 | Msa0993020:intron | 15.0% |
!! | TTGTAATAATATACATATGT+TGG | - | chr6_4:64224195-64224214 | Msa0993020:intron | 15.0% |
!! | ATTATTAATAAGTAGTTCAA+AGG | - | chr6_4:64225059-64225078 | Msa0993020:intron | 15.0% |
!! | ATTAGATTAAACTCACAATT+AGG | + | chr6_4:64223732-64223751 | None:intergenic | 20.0% |
!! | ATTCACGAATATTATAACAA+AGG | + | chr6_4:64223768-64223787 | None:intergenic | 20.0% |
!! | AATTAAAAAGAGTGAAAAAG+GGG | + | chr6_4:64223932-64223951 | None:intergenic | 20.0% |
!! | GAATTAAAAAGAGTGAAAAA+GGG | + | chr6_4:64223933-64223952 | None:intergenic | 20.0% |
!! | TGAATTAAAAAGAGTGAAAA+AGG | + | chr6_4:64223934-64223953 | None:intergenic | 20.0% |
!! | ATGTGCTTTATATTGAAATT+GGG | - | chr6_4:64223967-64223986 | Msa0993020:intron | 20.0% |
!! | AATCATGAAAAGACAAAAAA+TGG | - | chr6_4:64225002-64225021 | Msa0993020:intron | 20.0% |
!! | ATCATGAAAAGACAAAAAAT+GGG | - | chr6_4:64225003-64225022 | Msa0993020:intron | 20.0% |
!!! | TAGTTAAGTAATTGATTCTA+TGG | - | chr6_4:64225330-64225349 | Msa0993020:intron | 20.0% |
!! | ATTAGATTAAACTCACAATT+AGG | + | chr6_4:64223732-64223751 | None:intergenic | 20.0% |
!! | ATTCACGAATATTATAACAA+AGG | + | chr6_4:64223768-64223787 | None:intergenic | 20.0% |
!! | AATTAAAAAGAGTGAAAAAG+GGG | + | chr6_4:64223932-64223951 | None:intergenic | 20.0% |
!! | GAATTAAAAAGAGTGAAAAA+GGG | + | chr6_4:64223933-64223952 | None:intergenic | 20.0% |
!! | TGAATTAAAAAGAGTGAAAA+AGG | + | chr6_4:64223934-64223953 | None:intergenic | 20.0% |
!! | ATGTGCTTTATATTGAAATT+GGG | - | chr6_4:64223967-64223986 | Msa0993020:intron | 20.0% |
!! | AATCATGAAAAGACAAAAAA+TGG | - | chr6_4:64225002-64225021 | Msa0993020:intron | 20.0% |
!! | ATCATGAAAAGACAAAAAAT+GGG | - | chr6_4:64225003-64225022 | Msa0993020:intron | 20.0% |
!!! | TAGTTAAGTAATTGATTCTA+TGG | - | chr6_4:64225330-64225349 | Msa0993020:intron | 20.0% |
! | ATTAAAAAGAGTGAAAAAGG+GGG | + | chr6_4:64223931-64223950 | None:intergenic | 25.0% |
! | TTCAATATAAAGCACATCAA+AGG | + | chr6_4:64223964-64223983 | None:intergenic | 25.0% |
! | GATGTGCTTTATATTGAAAT+TGG | - | chr6_4:64223966-64223985 | Msa0993020:intron | 25.0% |
!! | TGTTATACTTCAATGCATTT+TGG | - | chr6_4:64224071-64224090 | Msa0993020:intron | 25.0% |
! | TATGTAGAATTGGATTTGAA+TGG | - | chr6_4:64224103-64224122 | Msa0993020:CDS | 25.0% |
! | TAATATAACAGTGACAATGT+CGG | - | chr6_4:64224127-64224146 | Msa0993020:CDS | 25.0% |
!! | TATACATATGTTGGTTGAAT+TGG | - | chr6_4:64224204-64224223 | Msa0993020:intron | 25.0% |
!! | ATACATATGTTGGTTGAATT+GGG | - | chr6_4:64224205-64224224 | Msa0993020:intron | 25.0% |
! | AAGAACACACATTCAAATAT+AGG | + | chr6_4:64224292-64224311 | None:intergenic | 25.0% |
! | TTACATGAACAAAATCAAAG+AGG | + | chr6_4:64224394-64224413 | None:intergenic | 25.0% |
! | TTGTCAAATAGCAGTTATAT+CGG | - | chr6_4:64224521-64224540 | Msa0993020:intron | 25.0% |
! | TACACTACTAGATTAAAGTT+AGG | - | chr6_4:64224653-64224672 | Msa0993020:intron | 25.0% |
! | TGTGATGTTAATTAGGATTA+TGG | - | chr6_4:64224813-64224832 | Msa0993020:intron | 25.0% |
!! | GATATAATCATTTTCAACAC+AGG | - | chr6_4:64224969-64224988 | Msa0993020:intron | 25.0% |
! | AGATAGCTTTCATTTGTAAT+GGG | + | chr6_4:64225415-64225434 | None:intergenic | 25.0% |
! | AAGATAGCTTTCATTTGTAA+TGG | + | chr6_4:64225416-64225435 | None:intergenic | 25.0% |
! | ATTAAAAAGAGTGAAAAAGG+GGG | + | chr6_4:64223931-64223950 | None:intergenic | 25.0% |
! | TTCAATATAAAGCACATCAA+AGG | + | chr6_4:64223964-64223983 | None:intergenic | 25.0% |
! | GATGTGCTTTATATTGAAAT+TGG | - | chr6_4:64223966-64223985 | Msa0993020:intron | 25.0% |
!! | TGTTATACTTCAATGCATTT+TGG | - | chr6_4:64224071-64224090 | Msa0993020:intron | 25.0% |
! | TATGTAGAATTGGATTTGAA+TGG | - | chr6_4:64224103-64224122 | Msa0993020:CDS | 25.0% |
! | TAATATAACAGTGACAATGT+CGG | - | chr6_4:64224127-64224146 | Msa0993020:CDS | 25.0% |
!! | TATACATATGTTGGTTGAAT+TGG | - | chr6_4:64224204-64224223 | Msa0993020:intron | 25.0% |
!! | ATACATATGTTGGTTGAATT+GGG | - | chr6_4:64224205-64224224 | Msa0993020:intron | 25.0% |
! | AAGAACACACATTCAAATAT+AGG | + | chr6_4:64224292-64224311 | None:intergenic | 25.0% |
! | TTACATGAACAAAATCAAAG+AGG | + | chr6_4:64224394-64224413 | None:intergenic | 25.0% |
! | TTGTCAAATAGCAGTTATAT+CGG | - | chr6_4:64224521-64224540 | Msa0993020:intron | 25.0% |
! | TACACTACTAGATTAAAGTT+AGG | - | chr6_4:64224653-64224672 | Msa0993020:intron | 25.0% |
! | TGTGATGTTAATTAGGATTA+TGG | - | chr6_4:64224813-64224832 | Msa0993020:intron | 25.0% |
!! | GATATAATCATTTTCAACAC+AGG | - | chr6_4:64224969-64224988 | Msa0993020:intron | 25.0% |
! | AGATAGCTTTCATTTGTAAT+GGG | + | chr6_4:64225415-64225434 | None:intergenic | 25.0% |
! | AAGATAGCTTTCATTTGTAA+TGG | + | chr6_4:64225416-64225435 | None:intergenic | 25.0% |
! | TTTCTATTTTCTCTTTCTCC+TGG | - | chr6_4:64223792-64223811 | Msa0993020:three_prime_UTR | 30.0% |
! | TATACTTCAATGCATTTTGG+TGG | - | chr6_4:64224074-64224093 | Msa0993020:intron | 30.0% |
!! | ATACTTCAATGCATTTTGGT+GGG | - | chr6_4:64224075-64224094 | Msa0993020:intron | 30.0% |
AATATAACAGTGACAATGTC+GGG | - | chr6_4:64224128-64224147 | Msa0993020:CDS | 30.0% | |
TTGAATTGGGAATAAGATCT+AGG | - | chr6_4:64224218-64224237 | Msa0993020:intron | 30.0% | |
!!! | TCTTTGATTTGCCTTTTTTG+TGG | - | chr6_4:64224308-64224327 | Msa0993020:CDS | 30.0% |
!!! | CTTTGATTTGCCTTTTTTGT+GGG | - | chr6_4:64224309-64224328 | Msa0993020:CDS | 30.0% |
ATGCATACATGAATGAGTAA+AGG | + | chr6_4:64224350-64224369 | None:intergenic | 30.0% | |
AGATGCATTAGTTAGTCATA+AGG | - | chr6_4:64224429-64224448 | Msa0993020:CDS | 30.0% | |
!! | TGCGAGTAGATTTTAACAAA+CGG | - | chr6_4:64224597-64224616 | Msa0993020:intron | 30.0% |
! | TTTTGCTTGCATAAGGTTTA+AGG | - | chr6_4:64224766-64224785 | Msa0993020:intron | 30.0% |
GATGTGTTGTGATGTTAATT+AGG | - | chr6_4:64224806-64224825 | Msa0993020:intron | 30.0% | |
TCCATTCTTGTACAAGAAAT+GGG | + | chr6_4:64224863-64224882 | None:intergenic | 30.0% | |
TTCCATTCTTGTACAAGAAA+TGG | + | chr6_4:64224864-64224883 | None:intergenic | 30.0% | |
AGCATCATAATATTGAGACT+TGG | + | chr6_4:64224949-64224968 | None:intergenic | 30.0% | |
! | TACAACAAGCATTTAAGACA+TGG | - | chr6_4:64225170-64225189 | Msa0993020:intron | 30.0% |
! | ACAACAAGCATTTAAGACAT+GGG | - | chr6_4:64225171-64225190 | Msa0993020:intron | 30.0% |
ATATGTGTGTGATCCATTAT+AGG | - | chr6_4:64225475-64225494 | Msa0993020:intron | 30.0% | |
AGCTAACATACTTCCTATAA+TGG | + | chr6_4:64225491-64225510 | None:intergenic | 30.0% | |
! | TTTCTATTTTCTCTTTCTCC+TGG | - | chr6_4:64223792-64223811 | Msa0993020:three_prime_UTR | 30.0% |
! | TATACTTCAATGCATTTTGG+TGG | - | chr6_4:64224074-64224093 | Msa0993020:intron | 30.0% |
!! | ATACTTCAATGCATTTTGGT+GGG | - | chr6_4:64224075-64224094 | Msa0993020:intron | 30.0% |
AATATAACAGTGACAATGTC+GGG | - | chr6_4:64224128-64224147 | Msa0993020:CDS | 30.0% | |
TTGAATTGGGAATAAGATCT+AGG | - | chr6_4:64224218-64224237 | Msa0993020:intron | 30.0% | |
!!! | TCTTTGATTTGCCTTTTTTG+TGG | - | chr6_4:64224308-64224327 | Msa0993020:CDS | 30.0% |
!!! | CTTTGATTTGCCTTTTTTGT+GGG | - | chr6_4:64224309-64224328 | Msa0993020:CDS | 30.0% |
ATGCATACATGAATGAGTAA+AGG | + | chr6_4:64224350-64224369 | None:intergenic | 30.0% | |
AGATGCATTAGTTAGTCATA+AGG | - | chr6_4:64224429-64224448 | Msa0993020:CDS | 30.0% | |
!! | TGCGAGTAGATTTTAACAAA+CGG | - | chr6_4:64224597-64224616 | Msa0993020:intron | 30.0% |
! | TTTTGCTTGCATAAGGTTTA+AGG | - | chr6_4:64224766-64224785 | Msa0993020:intron | 30.0% |
GATGTGTTGTGATGTTAATT+AGG | - | chr6_4:64224806-64224825 | Msa0993020:intron | 30.0% | |
TCCATTCTTGTACAAGAAAT+GGG | + | chr6_4:64224863-64224882 | None:intergenic | 30.0% | |
TTCCATTCTTGTACAAGAAA+TGG | + | chr6_4:64224864-64224883 | None:intergenic | 30.0% | |
AGCATCATAATATTGAGACT+TGG | + | chr6_4:64224949-64224968 | None:intergenic | 30.0% | |
! | TACAACAAGCATTTAAGACA+TGG | - | chr6_4:64225170-64225189 | Msa0993020:intron | 30.0% |
! | ACAACAAGCATTTAAGACAT+GGG | - | chr6_4:64225171-64225190 | Msa0993020:intron | 30.0% |
ATATGTGTGTGATCCATTAT+AGG | - | chr6_4:64225475-64225494 | Msa0993020:intron | 30.0% | |
AGCTAACATACTTCCTATAA+TGG | + | chr6_4:64225491-64225510 | None:intergenic | 30.0% | |
TATTGAAATTGGGTTTCTGC+AGG | - | chr6_4:64223977-64223996 | Msa0993020:intron | 35.0% | |
GTGGGTTCTTTATGTAGAAT+TGG | - | chr6_4:64224093-64224112 | Msa0993020:CDS | 35.0% | |
ATATAACAGTGACAATGTCG+GGG | - | chr6_4:64224129-64224148 | Msa0993020:CDS | 35.0% | |
TAGTTAGTCATAAGGTCTGT+AGG | - | chr6_4:64224437-64224456 | Msa0993020:CDS | 35.0% | |
TCAATTCCTTCAATGAAGAG+AGG | - | chr6_4:64224472-64224491 | Msa0993020:intron | 35.0% | |
AAATCACTATAGTGCTGTAG+TGG | - | chr6_4:64224569-64224588 | Msa0993020:intron | 35.0% | |
! | TGTACCAGTGTTGTTAATCA+CGG | + | chr6_4:64224637-64224656 | None:intergenic | 35.0% |
! | ATAGAGCTTTTGCTTGCATA+AGG | - | chr6_4:64224759-64224778 | Msa0993020:intron | 35.0% |
CCATTCTTGTACAAGAAATG+GGG | + | chr6_4:64224862-64224881 | None:intergenic | 35.0% | |
TTCCTCAAAGAGAAACTCTT+AGG | - | chr6_4:64224904-64224923 | Msa0993020:intron | 35.0% | |
! | TCATTTTCAACACAGGATAC+TGG | - | chr6_4:64224976-64224995 | Msa0993020:intron | 35.0% |
AGTAGAAACTACTTTCAGCA+AGG | - | chr6_4:64225109-64225128 | Msa0993020:intron | 35.0% | |
! | ATTTAAGACATGGGCTAAGT+GGG | - | chr6_4:64225180-64225199 | Msa0993020:intron | 35.0% |
TATTGAAATTGGGTTTCTGC+AGG | - | chr6_4:64223977-64223996 | Msa0993020:intron | 35.0% | |
GTGGGTTCTTTATGTAGAAT+TGG | - | chr6_4:64224093-64224112 | Msa0993020:CDS | 35.0% | |
ATATAACAGTGACAATGTCG+GGG | - | chr6_4:64224129-64224148 | Msa0993020:CDS | 35.0% | |
TAGTTAGTCATAAGGTCTGT+AGG | - | chr6_4:64224437-64224456 | Msa0993020:CDS | 35.0% | |
TCAATTCCTTCAATGAAGAG+AGG | - | chr6_4:64224472-64224491 | Msa0993020:intron | 35.0% | |
AAATCACTATAGTGCTGTAG+TGG | - | chr6_4:64224569-64224588 | Msa0993020:intron | 35.0% | |
! | TGTACCAGTGTTGTTAATCA+CGG | + | chr6_4:64224637-64224656 | None:intergenic | 35.0% |
! | ATAGAGCTTTTGCTTGCATA+AGG | - | chr6_4:64224759-64224778 | Msa0993020:intron | 35.0% |
CCATTCTTGTACAAGAAATG+GGG | + | chr6_4:64224862-64224881 | None:intergenic | 35.0% | |
TTCCTCAAAGAGAAACTCTT+AGG | - | chr6_4:64224904-64224923 | Msa0993020:intron | 35.0% | |
! | TCATTTTCAACACAGGATAC+TGG | - | chr6_4:64224976-64224995 | Msa0993020:intron | 35.0% |
AGTAGAAACTACTTTCAGCA+AGG | - | chr6_4:64225109-64225128 | Msa0993020:intron | 35.0% | |
! | ATTTAAGACATGGGCTAAGT+GGG | - | chr6_4:64225180-64225199 | Msa0993020:intron | 35.0% |
AATATGAGCATCACAACACC+AGG | + | chr6_4:64223813-64223832 | None:intergenic | 40.0% | |
GCAAACCCTATGAATCTGAA+GGG | - | chr6_4:64223999-64224018 | Msa0993020:intron | 40.0% | |
CAAACCCTATGAATCTGAAG+GGG | - | chr6_4:64224000-64224019 | Msa0993020:intron | 40.0% | |
!!! | TGATTTGCCTTTTTTGTGGG+TGG | - | chr6_4:64224312-64224331 | Msa0993020:CDS | 40.0% |
TGAAATGCCACCCACAAAAA+AGG | + | chr6_4:64224322-64224341 | None:intergenic | 40.0% | |
GGATGTTGGATGTGTTTGTT+TGG | - | chr6_4:64224725-64224744 | Msa0993020:intron | 40.0% | |
TGGGGATTTCACAATGTCTA+TGG | + | chr6_4:64224844-64224863 | None:intergenic | 40.0% | |
CCCCATTTCTTGTACAAGAA+TGG | - | chr6_4:64224859-64224878 | Msa0993020:intron | 40.0% | |
AGCCTAAGAGTTTCTCTTTG+AGG | + | chr6_4:64224909-64224928 | None:intergenic | 40.0% | |
! | TTTTCAACACAGGATACTGG+TGG | - | chr6_4:64224979-64224998 | Msa0993020:intron | 40.0% |
! | CATTTAAGACATGGGCTAAG+TGG | - | chr6_4:64225179-64225198 | Msa0993020:intron | 40.0% |
TCTATGGCTGAAATTTGCAG+AGG | - | chr6_4:64225346-64225365 | Msa0993020:intron | 40.0% | |
CTATGGCTGAAATTTGCAGA+GGG | - | chr6_4:64225347-64225366 | Msa0993020:intron | 40.0% | |
TATGGCTGAAATTTGCAGAG+GGG | - | chr6_4:64225348-64225367 | Msa0993020:intron | 40.0% | |
! | AACTCTGGAGGTAAATGTGA+TGG | - | chr6_4:64225379-64225398 | Msa0993020:intron | 40.0% |
! | ACTCTGGAGGTAAATGTGAT+GGG | - | chr6_4:64225380-64225399 | Msa0993020:intron | 40.0% |
TGCAGCATATCCATTGACAA+TGG | - | chr6_4:64225435-64225454 | Msa0993020:intron | 40.0% | |
GCAGCATATCCATTGACAAT+GGG | - | chr6_4:64225436-64225455 | Msa0993020:intron | 40.0% | |
TCGACAATTCCCATTGTCAA+TGG | + | chr6_4:64225448-64225467 | None:intergenic | 40.0% | |
AATATGAGCATCACAACACC+AGG | + | chr6_4:64223813-64223832 | None:intergenic | 40.0% | |
GCAAACCCTATGAATCTGAA+GGG | - | chr6_4:64223999-64224018 | Msa0993020:intron | 40.0% | |
CAAACCCTATGAATCTGAAG+GGG | - | chr6_4:64224000-64224019 | Msa0993020:intron | 40.0% | |
!!! | TGATTTGCCTTTTTTGTGGG+TGG | - | chr6_4:64224312-64224331 | Msa0993020:CDS | 40.0% |
TGAAATGCCACCCACAAAAA+AGG | + | chr6_4:64224322-64224341 | None:intergenic | 40.0% | |
GGATGTTGGATGTGTTTGTT+TGG | - | chr6_4:64224725-64224744 | Msa0993020:intron | 40.0% | |
TGGGGATTTCACAATGTCTA+TGG | + | chr6_4:64224844-64224863 | None:intergenic | 40.0% | |
CCCCATTTCTTGTACAAGAA+TGG | - | chr6_4:64224859-64224878 | Msa0993020:intron | 40.0% | |
AGCCTAAGAGTTTCTCTTTG+AGG | + | chr6_4:64224909-64224928 | None:intergenic | 40.0% | |
! | TTTTCAACACAGGATACTGG+TGG | - | chr6_4:64224979-64224998 | Msa0993020:intron | 40.0% |
! | CATTTAAGACATGGGCTAAG+TGG | - | chr6_4:64225179-64225198 | Msa0993020:intron | 40.0% |
TCTATGGCTGAAATTTGCAG+AGG | - | chr6_4:64225346-64225365 | Msa0993020:intron | 40.0% | |
CTATGGCTGAAATTTGCAGA+GGG | - | chr6_4:64225347-64225366 | Msa0993020:intron | 40.0% | |
TATGGCTGAAATTTGCAGAG+GGG | - | chr6_4:64225348-64225367 | Msa0993020:intron | 40.0% | |
! | AACTCTGGAGGTAAATGTGA+TGG | - | chr6_4:64225379-64225398 | Msa0993020:intron | 40.0% |
! | ACTCTGGAGGTAAATGTGAT+GGG | - | chr6_4:64225380-64225399 | Msa0993020:intron | 40.0% |
TGCAGCATATCCATTGACAA+TGG | - | chr6_4:64225435-64225454 | Msa0993020:intron | 40.0% | |
GCAGCATATCCATTGACAAT+GGG | - | chr6_4:64225436-64225455 | Msa0993020:intron | 40.0% | |
TCGACAATTCCCATTGTCAA+TGG | + | chr6_4:64225448-64225467 | None:intergenic | 40.0% | |
GGCAAACCCTATGAATCTGA+AGG | - | chr6_4:64223998-64224017 | Msa0993020:intron | 45.0% | |
ACTGCCCCTTCAGATTCATA+GGG | + | chr6_4:64224007-64224026 | None:intergenic | 45.0% | |
GACAATGTCGGGGACTAATT+TGG | - | chr6_4:64224139-64224158 | Msa0993020:CDS | 45.0% | |
AATGTCGGGGACTAATTTGG+TGG | - | chr6_4:64224142-64224161 | Msa0993020:CDS | 45.0% | |
!! | TAAGGTCTGTAGGAGTGCTT+AGG | - | chr6_4:64224447-64224466 | Msa0993020:CDS | 45.0% |
!! | AAGGTCTGTAGGAGTGCTTA+GGG | - | chr6_4:64224448-64224467 | Msa0993020:CDS | 45.0% |
CACTCTCCTCTCTTCATTGA+AGG | + | chr6_4:64224481-64224500 | None:intergenic | 45.0% | |
CTTCAATGAAGAGAGGAGAG+TGG | - | chr6_4:64224479-64224498 | Msa0993020:intron | 45.0% | |
! | CCAGTGTTGTTAATCACGGA+TGG | + | chr6_4:64224633-64224652 | None:intergenic | 45.0% |
CCATCCGTGATTAACAACAC+TGG | - | chr6_4:64224630-64224649 | Msa0993020:intron | 45.0% | |
AGGACATGACTAAGACAGCA+TGG | + | chr6_4:64224691-64224710 | None:intergenic | 45.0% | |
GTCTTAGTCATGTCCTTGCA+TGG | - | chr6_4:64224695-64224714 | Msa0993020:intron | 45.0% | |
ATGTCCTTGCATGGTGTGTT+AGG | - | chr6_4:64224704-64224723 | Msa0993020:intron | 45.0% | |
ACATCCTAACACACCATGCA+AGG | + | chr6_4:64224711-64224730 | None:intergenic | 45.0% | |
TGCATGGTGTGTTAGGATGT+TGG | - | chr6_4:64224711-64224730 | Msa0993020:intron | 45.0% | |
TGATAGCAAGCACACGTACA+AGG | - | chr6_4:64225216-64225235 | Msa0993020:intron | 45.0% | |
GATAGCAAGCACACGTACAA+GGG | - | chr6_4:64225217-64225236 | Msa0993020:intron | 45.0% | |
!! | CGTACAAGGGTCTTTTTCAC+TGG | - | chr6_4:64225230-64225249 | Msa0993020:intron | 45.0% |
ATGGCTGAAATTTGCAGAGG+GGG | - | chr6_4:64225349-64225368 | Msa0993020:intron | 45.0% | |
! | CTCTGGAGGTAAATGTGATG+GGG | - | chr6_4:64225381-64225400 | Msa0993020:intron | 45.0% |
GAAACACTAGCGCTAGTCAA+TGG | + | chr6_4:64225528-64225547 | None:intergenic | 45.0% | |
GGCAAACCCTATGAATCTGA+AGG | - | chr6_4:64223998-64224017 | Msa0993020:intron | 45.0% | |
ACTGCCCCTTCAGATTCATA+GGG | + | chr6_4:64224007-64224026 | None:intergenic | 45.0% | |
GACAATGTCGGGGACTAATT+TGG | - | chr6_4:64224139-64224158 | Msa0993020:CDS | 45.0% | |
AATGTCGGGGACTAATTTGG+TGG | - | chr6_4:64224142-64224161 | Msa0993020:CDS | 45.0% | |
!! | TAAGGTCTGTAGGAGTGCTT+AGG | - | chr6_4:64224447-64224466 | Msa0993020:CDS | 45.0% |
!! | AAGGTCTGTAGGAGTGCTTA+GGG | - | chr6_4:64224448-64224467 | Msa0993020:CDS | 45.0% |
CACTCTCCTCTCTTCATTGA+AGG | + | chr6_4:64224481-64224500 | None:intergenic | 45.0% | |
CTTCAATGAAGAGAGGAGAG+TGG | - | chr6_4:64224479-64224498 | Msa0993020:intron | 45.0% | |
! | CCAGTGTTGTTAATCACGGA+TGG | + | chr6_4:64224633-64224652 | None:intergenic | 45.0% |
CCATCCGTGATTAACAACAC+TGG | - | chr6_4:64224630-64224649 | Msa0993020:intron | 45.0% | |
AGGACATGACTAAGACAGCA+TGG | + | chr6_4:64224691-64224710 | None:intergenic | 45.0% | |
GTCTTAGTCATGTCCTTGCA+TGG | - | chr6_4:64224695-64224714 | Msa0993020:intron | 45.0% | |
ATGTCCTTGCATGGTGTGTT+AGG | - | chr6_4:64224704-64224723 | Msa0993020:intron | 45.0% | |
ACATCCTAACACACCATGCA+AGG | + | chr6_4:64224711-64224730 | None:intergenic | 45.0% | |
TGCATGGTGTGTTAGGATGT+TGG | - | chr6_4:64224711-64224730 | Msa0993020:intron | 45.0% | |
TGATAGCAAGCACACGTACA+AGG | - | chr6_4:64225216-64225235 | Msa0993020:intron | 45.0% | |
GATAGCAAGCACACGTACAA+GGG | - | chr6_4:64225217-64225236 | Msa0993020:intron | 45.0% | |
!! | CGTACAAGGGTCTTTTTCAC+TGG | - | chr6_4:64225230-64225249 | Msa0993020:intron | 45.0% |
ATGGCTGAAATTTGCAGAGG+GGG | - | chr6_4:64225349-64225368 | Msa0993020:intron | 45.0% | |
! | CTCTGGAGGTAAATGTGATG+GGG | - | chr6_4:64225381-64225400 | Msa0993020:intron | 45.0% |
GAAACACTAGCGCTAGTCAA+TGG | + | chr6_4:64225528-64225547 | None:intergenic | 45.0% | |
CACTGCCCCTTCAGATTCAT+AGG | + | chr6_4:64224008-64224027 | None:intergenic | 50.0% | |
TGAGCTTCTTGCTGCTAAGC+AGG | - | chr6_4:64224031-64224050 | Msa0993020:intron | 50.0% | |
AGAGGAGAGTGGAGTTCAGA+TGG | - | chr6_4:64224490-64224509 | Msa0993020:intron | 50.0% | |
!! | ATATCGGCTCTGCAGTGTTG+TGG | - | chr6_4:64224537-64224556 | Msa0993020:intron | 50.0% |
!! | CGTGTGCTTGCTATCAACTG+TGG | + | chr6_4:64225212-64225231 | None:intergenic | 50.0% |
TGGCTGAAATTTGCAGAGGG+GGG | - | chr6_4:64225350-64225369 | Msa0993020:intron | 50.0% | |
CACTGCCCCTTCAGATTCAT+AGG | + | chr6_4:64224008-64224027 | None:intergenic | 50.0% | |
TGAGCTTCTTGCTGCTAAGC+AGG | - | chr6_4:64224031-64224050 | Msa0993020:intron | 50.0% | |
AGAGGAGAGTGGAGTTCAGA+TGG | - | chr6_4:64224490-64224509 | Msa0993020:intron | 50.0% | |
!! | ATATCGGCTCTGCAGTGTTG+TGG | - | chr6_4:64224537-64224556 | Msa0993020:intron | 50.0% |
!! | CGTGTGCTTGCTATCAACTG+TGG | + | chr6_4:64225212-64225231 | None:intergenic | 50.0% |
TGGCTGAAATTTGCAGAGGG+GGG | - | chr6_4:64225350-64225369 | Msa0993020:intron | 50.0% | |
GCTTCTTGCTGCTAAGCAGG+TGG | - | chr6_4:64224034-64224053 | Msa0993020:intron | 55.0% | |
TGAAATTTGCAGAGGGGGGC+AGG | - | chr6_4:64225354-64225373 | Msa0993020:intron | 55.0% | |
GAAATTTGCAGAGGGGGGCA+GGG | - | chr6_4:64225355-64225374 | Msa0993020:intron | 55.0% | |
AAATTTGCAGAGGGGGGCAG+GGG | - | chr6_4:64225356-64225375 | Msa0993020:intron | 55.0% | |
GCTTCTTGCTGCTAAGCAGG+TGG | - | chr6_4:64224034-64224053 | Msa0993020:intron | 55.0% | |
TGAAATTTGCAGAGGGGGGC+AGG | - | chr6_4:64225354-64225373 | Msa0993020:intron | 55.0% | |
GAAATTTGCAGAGGGGGGCA+GGG | - | chr6_4:64225355-64225374 | Msa0993020:intron | 55.0% | |
AAATTTGCAGAGGGGGGCAG+GGG | - | chr6_4:64225356-64225375 | Msa0993020:intron | 55.0% | |
AGAGGGGGGCAGGGGAACTC+TGG | - | chr6_4:64225364-64225383 | Msa0993020:intron | 70.0% | |
AGAGGGGGGCAGGGGAACTC+TGG | - | chr6_4:64225364-64225383 | Msa0993020:intron | 70.0% | |
GGGGGGCAGGGGAACTCTGG+AGG | - | chr6_4:64225367-64225386 | Msa0993020:intron | 75.0% | |
GGGGGGCAGGGGAACTCTGG+AGG | - | chr6_4:64225367-64225386 | Msa0993020:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 64223724 | 64225586 | 64223724 | ID=Msa0993020;Name=Msa0993020 |
chr6_4 | mRNA | 64223724 | 64225586 | 64223724 | ID=Msa0993020-mRNA-1;Parent=Msa0993020;Name=Msa0993020-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.25|0.4|0.8|1|1|5|100|168 |
chr6_4 | exon | 64223724 | 64223944 | 64223724 | ID=Msa0993020-mRNA-1:exon:12148;Parent=Msa0993020-mRNA-1 |
chr6_4 | exon | 64224080 | 64224199 | 64224080 | ID=Msa0993020-mRNA-1:exon:12147;Parent=Msa0993020-mRNA-1 |
chr6_4 | exon | 64224286 | 64224482 | 64224286 | ID=Msa0993020-mRNA-1:exon:12146;Parent=Msa0993020-mRNA-1 |
chr6_4 | exon | 64225255 | 64225311 | 64225255 | ID=Msa0993020-mRNA-1:exon:12145;Parent=Msa0993020-mRNA-1 |
chr6_4 | exon | 64225575 | 64225586 | 64225575 | ID=Msa0993020-mRNA-1:exon:12144;Parent=Msa0993020-mRNA-1 |
chr6_4 | CDS | 64225575 | 64225586 | 64225575 | ID=Msa0993020-mRNA-1:cds;Parent=Msa0993020-mRNA-1 |
chr6_4 | CDS | 64225255 | 64225311 | 64225255 | ID=Msa0993020-mRNA-1:cds;Parent=Msa0993020-mRNA-1 |
chr6_4 | CDS | 64224286 | 64224482 | 64224286 | ID=Msa0993020-mRNA-1:cds;Parent=Msa0993020-mRNA-1 |
chr6_4 | CDS | 64224080 | 64224199 | 64224080 | ID=Msa0993020-mRNA-1:cds;Parent=Msa0993020-mRNA-1 |
chr6_4 | CDS | 64223824 | 64223944 | 64223824 | ID=Msa0993020-mRNA-1:cds;Parent=Msa0993020-mRNA-1 |
chr6_4 | three_prime_UTR | 64223724 | 64223823 | 64223724 | ID=Msa0993020-mRNA-1:three_prime_utr;Parent=Msa0993020-mRNA-1 |
Gene Sequence |
Protein sequence |