AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0993020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993020 MtrunA17_Chr4g0068111 80.982 163 18 1 17 166 227 389 6.78e-91 272
Msa0993020 MtrunA17_Chr7g0258851 48.077 156 67 2 24 166 367 521 1.03e-46 160
Msa0993020 MtrunA17_Chr1g0175671 46.795 156 69 2 24 166 289 443 1.20e-45 156
Msa0993020 MtrunA17_Chr8g0368461 48.077 156 66 2 24 166 309 462 2.81e-44 153
Msa0993020 MtrunA17_Chr1g0213281 44.304 158 73 3 23 166 293 449 1.17e-43 151
Msa0993020 MtrunA17_Chr5g0413271 45.455 165 73 3 15 166 250 410 1.44e-42 147
Msa0993020 MtrunA17_Chr4g0071391 40.385 156 79 2 24 166 228 382 2.27e-35 127
Msa0993020 MtrunA17_Chr7g0269991 39.490 157 79 3 23 166 255 408 1.18e-29 112
Msa0993020 MtrunA17_Chr3g0105301 30.409 171 92 3 17 166 148 312 1.48e-20 87.0
Msa0993020 MtrunA17_Chr7g0259711 30.282 142 86 1 17 145 203 344 2.62e-18 80.9
Msa0993020 MtrunA17_Chr2g0287901 29.577 142 87 1 17 145 209 350 6.90e-18 79.7
Msa0993020 MtrunA17_Chr1g0171171 25.949 158 103 2 18 166 158 310 6.78e-17 76.6
Msa0993020 MtrunA17_Chr3g0126021 33.333 114 76 0 16 129 244 357 7.98e-17 76.6
Msa0993020 MtrunA17_Chr4g0045951 30.189 159 86 5 24 166 157 306 3.48e-16 74.7
Msa0993020 MtrunA17_Chr1g0210771 27.044 159 101 3 17 166 163 315 4.11e-16 74.3
Msa0993020 MtrunA17_Chr5g0430371 32.710 107 66 1 23 129 169 269 8.68e-16 73.6
Msa0993020 MtrunA17_Chr8g0384151 31.579 114 78 0 16 129 201 314 2.23e-15 72.4
Msa0993020 MtrunA17_Chr2g0314791 32.335 167 93 6 1 156 122 279 3.96e-15 71.6
Msa0993020 MtrunA17_Chr4g0045941 28.662 157 91 5 24 166 145 294 4.32e-15 71.6
Msa0993020 MtrunA17_Chr2g0283581 27.389 157 93 5 24 166 153 302 4.99e-15 71.2
Msa0993020 MtrunA17_Chr2g0314801 31.008 129 73 3 53 166 169 296 8.15e-15 70.9
Msa0993020 MtrunA17_Chr4g0006991 26.667 165 93 6 11 154 188 345 8.84e-13 65.1
Msa0993020 MtrunA17_Chr2g0325481 28.025 157 92 4 24 166 162 311 9.02e-13 65.1
Msa0993020 MtrunA17_Chr4g0005491 27.879 165 98 5 21 166 174 336 4.32e-12 63.2
Msa0993020 MtrunA17_Chr5g0413851 33.562 146 73 8 43 166 159 302 9.63e-12 62.0
Msa0993020 MtrunA17_Chr7g0242701 28.000 125 77 4 11 129 188 305 4.52e-11 60.1
Msa0993020 MtrunA17_Chr3g0097891 26.761 142 82 4 25 151 144 278 7.94e-11 59.3
Msa0993020 MtrunA17_Chr1g0209921 33.962 106 59 3 25 129 160 255 9.43e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993020 AT5G49340.1 52.866 157 59 3 24 166 220 375 6.56e-48 161
Msa0993020 AT3G12060.1 46.154 156 70 2 24 166 315 469 7.96e-46 157
Msa0993020 AT5G06700.1 44.872 156 72 2 24 166 374 528 2.66e-44 154
Msa0993020 AT1G60790.1 47.239 163 72 2 17 166 304 465 8.96e-43 149
Msa0993020 AT5G20590.1 39.103 156 81 2 24 166 261 415 9.84e-36 129
Msa0993020 AT3G62390.1 38.217 157 81 3 23 166 256 409 1.07e-32 121
Msa0993020 AT3G62390.2 42.056 107 60 1 23 129 256 360 4.21e-26 102
Msa0993020 AT5G20590.2 42.308 104 59 1 24 127 261 363 5.43e-26 102
Msa0993020 AT5G19160.1 34.028 144 82 1 24 154 218 361 6.12e-24 97.4
Msa0993020 AT5G58600.1 34.014 147 73 3 23 151 178 318 9.69e-23 93.6
Msa0993020 AT5G19160.2 37.736 106 66 0 24 129 218 323 5.01e-22 90.9
Msa0993020 AT5G58600.2 37.383 107 61 1 23 129 178 278 9.34e-21 86.7
Msa0993020 AT3G06080.2 29.878 164 101 2 17 166 215 378 2.16e-20 87.4
Msa0993020 AT3G11570.1 26.380 163 107 1 17 166 194 356 1.14e-18 82.4
Msa0993020 AT3G06080.1 33.628 113 75 0 17 129 215 327 1.16e-18 81.6
Msa0993020 AT1G48880.1 32.456 114 77 0 16 129 226 339 6.29e-16 74.7
Msa0993020 AT1G78710.1 31.250 160 84 5 24 166 149 299 8.24e-16 73.9
Msa0993020 AT5G06230.1 28.986 138 85 1 28 152 191 328 1.25e-15 73.6
Msa0993020 AT5G06230.2 28.986 138 85 1 28 152 150 287 1.35e-15 73.6
Msa0993020 AT1G29050.1 25.786 159 94 4 24 166 173 323 3.10e-15 72.4
Msa0993020 AT2G31110.1 26.061 165 97 5 18 166 3 158 4.59e-14 67.4
Msa0993020 AT3G54260.1 24.460 139 94 3 18 150 156 289 1.91e-13 67.4
Msa0993020 AT2G30900.1 32.500 160 81 6 25 166 158 308 2.37e-13 67.0
Msa0993020 AT2G31110.2 26.415 159 92 5 24 166 157 306 6.56e-13 65.9
Msa0993020 AT5G06230.3 30.612 98 68 0 28 125 191 288 2.46e-12 63.9
Msa0993020 AT2G30010.1 29.825 114 73 2 17 129 163 270 3.92e-12 63.5
Msa0993020 AT2G30010.2 24.000 175 102 4 17 166 206 374 4.84e-12 63.5
Msa0993020 AT2G30900.2 32.500 120 66 4 25 138 158 268 6.57e-11 59.7
Msa0993020 AT2G42570.1 26.115 157 95 5 24 166 159 308 8.06e-11 59.7

Find 33 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGATGTTAATTAGGATTA+TGG 0.236100 6_4:-64224475 Msa0993020:intron
TTCCATTCTTGTACAAGAAA+TGG 0.283805 6_4:+64224427 None:intergenic
CACTGCCCCTTCAGATTCAT+AGG 0.352061 6_4:+64225283 None:intergenic
TCCATTCTTGTACAAGAAAT+GGG 0.352802 6_4:+64224428 None:intergenic
TGGGGATTTCACAATGTCTA+TGG 0.361987 6_4:+64224447 None:intergenic
CCCCATTTCTTGTACAAGAA+TGG 0.370184 6_4:-64224429 Msa0993020:CDS
AAGATAGCTTTCATTTGTAA+TGG 0.380265 6_4:+64223875 None:intergenic
TTCCTCAAAGAGAAACTCTT+AGG 0.383679 6_4:-64224384 Msa0993020:CDS
AGCCTAAGAGTTTCTCTTTG+AGG 0.395436 6_4:+64224382 None:intergenic
AGATAGCTTTCATTTGTAAT+GGG 0.396515 6_4:+64223876 None:intergenic
AGCTAACATACTTCCTATAA+TGG 0.399388 6_4:+64223800 None:intergenic
ATATGTGTGTGATCCATTAT+AGG 0.428230 6_4:-64223813 Msa0993020:exon
TCGACAATTCCCATTGTCAA+TGG 0.442380 6_4:+64223843 None:intergenic
TGAGCTTCTTGCTGCTAAGC+AGG 0.466569 6_4:-64225257 Msa0993020:CDS
GAAACACTAGCGCTAGTCAA+TGG 0.489892 6_4:+64223763 None:intergenic
CATTTAAGACATGGGCTAAG+TGG 0.503496 6_4:-64224109 Msa0993020:CDS
AACTCTGGAGGTAAATGTGA+TGG 0.519732 6_4:-64223909 Msa0993020:CDS
GGCAAACCCTATGAATCTGA+AGG 0.520434 6_4:-64225290 Msa0993020:CDS
GCAGCATATCCATTGACAAT+GGG 0.531435 6_4:-64223852 Msa0993020:CDS
ATTTAAGACATGGGCTAAGT+GGG 0.550470 6_4:-64224108 Msa0993020:CDS
ACTGCCCCTTCAGATTCATA+GGG 0.561633 6_4:+64225284 None:intergenic
ACTCTGGAGGTAAATGTGAT+GGG 0.561757 6_4:-64223908 Msa0993020:CDS
CCATTCTTGTACAAGAAATG+GGG 0.584992 6_4:+64224429 None:intergenic
TACAACAAGCATTTAAGACA+TGG 0.597685 6_4:-64224118 Msa0993020:CDS
AGCATCATAATATTGAGACT+TGG 0.603108 6_4:+64224342 None:intergenic
TGCAGCATATCCATTGACAA+TGG 0.605023 6_4:-64223853 Msa0993020:CDS
GCAAACCCTATGAATCTGAA+GGG 0.614234 6_4:-64225289 Msa0993020:CDS
ACAACAAGCATTTAAGACAT+GGG 0.616597 6_4:-64224117 Msa0993020:CDS
AGTAGAAACTACTTTCAGCA+AGG 0.629801 6_4:-64224179 Msa0993020:CDS
CTCTGGAGGTAAATGTGATG+GGG 0.640338 6_4:-64223907 Msa0993020:CDS
CGTGTGCTTGCTATCAACTG+TGG 0.660073 6_4:+64224079 None:intergenic
CAAACCCTATGAATCTGAAG+GGG 0.696980 6_4:-64225288 Msa0993020:CDS
GCTTCTTGCTGCTAAGCAGG+TGG 0.701727 6_4:-64225254 Msa0993020:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTAATAATATACATATGT+TGG - chr6_4:64224195-64224214 Msa0993020:intron 15.0%
!! ATTATTAATAAGTAGTTCAA+AGG - chr6_4:64225059-64225078 Msa0993020:intron 15.0%
!! TTGTAATAATATACATATGT+TGG - chr6_4:64224195-64224214 Msa0993020:intron 15.0%
!! ATTATTAATAAGTAGTTCAA+AGG - chr6_4:64225059-64225078 Msa0993020:intron 15.0%
!! ATTAGATTAAACTCACAATT+AGG + chr6_4:64223732-64223751 None:intergenic 20.0%
!! ATTCACGAATATTATAACAA+AGG + chr6_4:64223768-64223787 None:intergenic 20.0%
!! AATTAAAAAGAGTGAAAAAG+GGG + chr6_4:64223932-64223951 None:intergenic 20.0%
!! GAATTAAAAAGAGTGAAAAA+GGG + chr6_4:64223933-64223952 None:intergenic 20.0%
!! TGAATTAAAAAGAGTGAAAA+AGG + chr6_4:64223934-64223953 None:intergenic 20.0%
!! ATGTGCTTTATATTGAAATT+GGG - chr6_4:64223967-64223986 Msa0993020:intron 20.0%
!! AATCATGAAAAGACAAAAAA+TGG - chr6_4:64225002-64225021 Msa0993020:intron 20.0%
!! ATCATGAAAAGACAAAAAAT+GGG - chr6_4:64225003-64225022 Msa0993020:intron 20.0%
!!! TAGTTAAGTAATTGATTCTA+TGG - chr6_4:64225330-64225349 Msa0993020:intron 20.0%
!! ATTAGATTAAACTCACAATT+AGG + chr6_4:64223732-64223751 None:intergenic 20.0%
!! ATTCACGAATATTATAACAA+AGG + chr6_4:64223768-64223787 None:intergenic 20.0%
!! AATTAAAAAGAGTGAAAAAG+GGG + chr6_4:64223932-64223951 None:intergenic 20.0%
!! GAATTAAAAAGAGTGAAAAA+GGG + chr6_4:64223933-64223952 None:intergenic 20.0%
!! TGAATTAAAAAGAGTGAAAA+AGG + chr6_4:64223934-64223953 None:intergenic 20.0%
!! ATGTGCTTTATATTGAAATT+GGG - chr6_4:64223967-64223986 Msa0993020:intron 20.0%
!! AATCATGAAAAGACAAAAAA+TGG - chr6_4:64225002-64225021 Msa0993020:intron 20.0%
!! ATCATGAAAAGACAAAAAAT+GGG - chr6_4:64225003-64225022 Msa0993020:intron 20.0%
!!! TAGTTAAGTAATTGATTCTA+TGG - chr6_4:64225330-64225349 Msa0993020:intron 20.0%
! ATTAAAAAGAGTGAAAAAGG+GGG + chr6_4:64223931-64223950 None:intergenic 25.0%
! TTCAATATAAAGCACATCAA+AGG + chr6_4:64223964-64223983 None:intergenic 25.0%
! GATGTGCTTTATATTGAAAT+TGG - chr6_4:64223966-64223985 Msa0993020:intron 25.0%
!! TGTTATACTTCAATGCATTT+TGG - chr6_4:64224071-64224090 Msa0993020:intron 25.0%
! TATGTAGAATTGGATTTGAA+TGG - chr6_4:64224103-64224122 Msa0993020:CDS 25.0%
! TAATATAACAGTGACAATGT+CGG - chr6_4:64224127-64224146 Msa0993020:CDS 25.0%
!! TATACATATGTTGGTTGAAT+TGG - chr6_4:64224204-64224223 Msa0993020:intron 25.0%
!! ATACATATGTTGGTTGAATT+GGG - chr6_4:64224205-64224224 Msa0993020:intron 25.0%
! AAGAACACACATTCAAATAT+AGG + chr6_4:64224292-64224311 None:intergenic 25.0%
! TTACATGAACAAAATCAAAG+AGG + chr6_4:64224394-64224413 None:intergenic 25.0%
! TTGTCAAATAGCAGTTATAT+CGG - chr6_4:64224521-64224540 Msa0993020:intron 25.0%
! TACACTACTAGATTAAAGTT+AGG - chr6_4:64224653-64224672 Msa0993020:intron 25.0%
! TGTGATGTTAATTAGGATTA+TGG - chr6_4:64224813-64224832 Msa0993020:intron 25.0%
!! GATATAATCATTTTCAACAC+AGG - chr6_4:64224969-64224988 Msa0993020:intron 25.0%
! AGATAGCTTTCATTTGTAAT+GGG + chr6_4:64225415-64225434 None:intergenic 25.0%
! AAGATAGCTTTCATTTGTAA+TGG + chr6_4:64225416-64225435 None:intergenic 25.0%
! ATTAAAAAGAGTGAAAAAGG+GGG + chr6_4:64223931-64223950 None:intergenic 25.0%
! TTCAATATAAAGCACATCAA+AGG + chr6_4:64223964-64223983 None:intergenic 25.0%
! GATGTGCTTTATATTGAAAT+TGG - chr6_4:64223966-64223985 Msa0993020:intron 25.0%
!! TGTTATACTTCAATGCATTT+TGG - chr6_4:64224071-64224090 Msa0993020:intron 25.0%
! TATGTAGAATTGGATTTGAA+TGG - chr6_4:64224103-64224122 Msa0993020:CDS 25.0%
! TAATATAACAGTGACAATGT+CGG - chr6_4:64224127-64224146 Msa0993020:CDS 25.0%
!! TATACATATGTTGGTTGAAT+TGG - chr6_4:64224204-64224223 Msa0993020:intron 25.0%
!! ATACATATGTTGGTTGAATT+GGG - chr6_4:64224205-64224224 Msa0993020:intron 25.0%
! AAGAACACACATTCAAATAT+AGG + chr6_4:64224292-64224311 None:intergenic 25.0%
! TTACATGAACAAAATCAAAG+AGG + chr6_4:64224394-64224413 None:intergenic 25.0%
! TTGTCAAATAGCAGTTATAT+CGG - chr6_4:64224521-64224540 Msa0993020:intron 25.0%
! TACACTACTAGATTAAAGTT+AGG - chr6_4:64224653-64224672 Msa0993020:intron 25.0%
! TGTGATGTTAATTAGGATTA+TGG - chr6_4:64224813-64224832 Msa0993020:intron 25.0%
!! GATATAATCATTTTCAACAC+AGG - chr6_4:64224969-64224988 Msa0993020:intron 25.0%
! AGATAGCTTTCATTTGTAAT+GGG + chr6_4:64225415-64225434 None:intergenic 25.0%
! AAGATAGCTTTCATTTGTAA+TGG + chr6_4:64225416-64225435 None:intergenic 25.0%
! TTTCTATTTTCTCTTTCTCC+TGG - chr6_4:64223792-64223811 Msa0993020:three_prime_UTR 30.0%
! TATACTTCAATGCATTTTGG+TGG - chr6_4:64224074-64224093 Msa0993020:intron 30.0%
!! ATACTTCAATGCATTTTGGT+GGG - chr6_4:64224075-64224094 Msa0993020:intron 30.0%
AATATAACAGTGACAATGTC+GGG - chr6_4:64224128-64224147 Msa0993020:CDS 30.0%
TTGAATTGGGAATAAGATCT+AGG - chr6_4:64224218-64224237 Msa0993020:intron 30.0%
!!! TCTTTGATTTGCCTTTTTTG+TGG - chr6_4:64224308-64224327 Msa0993020:CDS 30.0%
!!! CTTTGATTTGCCTTTTTTGT+GGG - chr6_4:64224309-64224328 Msa0993020:CDS 30.0%
ATGCATACATGAATGAGTAA+AGG + chr6_4:64224350-64224369 None:intergenic 30.0%
AGATGCATTAGTTAGTCATA+AGG - chr6_4:64224429-64224448 Msa0993020:CDS 30.0%
!! TGCGAGTAGATTTTAACAAA+CGG - chr6_4:64224597-64224616 Msa0993020:intron 30.0%
! TTTTGCTTGCATAAGGTTTA+AGG - chr6_4:64224766-64224785 Msa0993020:intron 30.0%
GATGTGTTGTGATGTTAATT+AGG - chr6_4:64224806-64224825 Msa0993020:intron 30.0%
TCCATTCTTGTACAAGAAAT+GGG + chr6_4:64224863-64224882 None:intergenic 30.0%
TTCCATTCTTGTACAAGAAA+TGG + chr6_4:64224864-64224883 None:intergenic 30.0%
AGCATCATAATATTGAGACT+TGG + chr6_4:64224949-64224968 None:intergenic 30.0%
! TACAACAAGCATTTAAGACA+TGG - chr6_4:64225170-64225189 Msa0993020:intron 30.0%
! ACAACAAGCATTTAAGACAT+GGG - chr6_4:64225171-64225190 Msa0993020:intron 30.0%
ATATGTGTGTGATCCATTAT+AGG - chr6_4:64225475-64225494 Msa0993020:intron 30.0%
AGCTAACATACTTCCTATAA+TGG + chr6_4:64225491-64225510 None:intergenic 30.0%
! TTTCTATTTTCTCTTTCTCC+TGG - chr6_4:64223792-64223811 Msa0993020:three_prime_UTR 30.0%
! TATACTTCAATGCATTTTGG+TGG - chr6_4:64224074-64224093 Msa0993020:intron 30.0%
!! ATACTTCAATGCATTTTGGT+GGG - chr6_4:64224075-64224094 Msa0993020:intron 30.0%
AATATAACAGTGACAATGTC+GGG - chr6_4:64224128-64224147 Msa0993020:CDS 30.0%
TTGAATTGGGAATAAGATCT+AGG - chr6_4:64224218-64224237 Msa0993020:intron 30.0%
!!! TCTTTGATTTGCCTTTTTTG+TGG - chr6_4:64224308-64224327 Msa0993020:CDS 30.0%
!!! CTTTGATTTGCCTTTTTTGT+GGG - chr6_4:64224309-64224328 Msa0993020:CDS 30.0%
ATGCATACATGAATGAGTAA+AGG + chr6_4:64224350-64224369 None:intergenic 30.0%
AGATGCATTAGTTAGTCATA+AGG - chr6_4:64224429-64224448 Msa0993020:CDS 30.0%
!! TGCGAGTAGATTTTAACAAA+CGG - chr6_4:64224597-64224616 Msa0993020:intron 30.0%
! TTTTGCTTGCATAAGGTTTA+AGG - chr6_4:64224766-64224785 Msa0993020:intron 30.0%
GATGTGTTGTGATGTTAATT+AGG - chr6_4:64224806-64224825 Msa0993020:intron 30.0%
TCCATTCTTGTACAAGAAAT+GGG + chr6_4:64224863-64224882 None:intergenic 30.0%
TTCCATTCTTGTACAAGAAA+TGG + chr6_4:64224864-64224883 None:intergenic 30.0%
AGCATCATAATATTGAGACT+TGG + chr6_4:64224949-64224968 None:intergenic 30.0%
! TACAACAAGCATTTAAGACA+TGG - chr6_4:64225170-64225189 Msa0993020:intron 30.0%
! ACAACAAGCATTTAAGACAT+GGG - chr6_4:64225171-64225190 Msa0993020:intron 30.0%
ATATGTGTGTGATCCATTAT+AGG - chr6_4:64225475-64225494 Msa0993020:intron 30.0%
AGCTAACATACTTCCTATAA+TGG + chr6_4:64225491-64225510 None:intergenic 30.0%
TATTGAAATTGGGTTTCTGC+AGG - chr6_4:64223977-64223996 Msa0993020:intron 35.0%
GTGGGTTCTTTATGTAGAAT+TGG - chr6_4:64224093-64224112 Msa0993020:CDS 35.0%
ATATAACAGTGACAATGTCG+GGG - chr6_4:64224129-64224148 Msa0993020:CDS 35.0%
TAGTTAGTCATAAGGTCTGT+AGG - chr6_4:64224437-64224456 Msa0993020:CDS 35.0%
TCAATTCCTTCAATGAAGAG+AGG - chr6_4:64224472-64224491 Msa0993020:intron 35.0%
AAATCACTATAGTGCTGTAG+TGG - chr6_4:64224569-64224588 Msa0993020:intron 35.0%
! TGTACCAGTGTTGTTAATCA+CGG + chr6_4:64224637-64224656 None:intergenic 35.0%
! ATAGAGCTTTTGCTTGCATA+AGG - chr6_4:64224759-64224778 Msa0993020:intron 35.0%
CCATTCTTGTACAAGAAATG+GGG + chr6_4:64224862-64224881 None:intergenic 35.0%
TTCCTCAAAGAGAAACTCTT+AGG - chr6_4:64224904-64224923 Msa0993020:intron 35.0%
! TCATTTTCAACACAGGATAC+TGG - chr6_4:64224976-64224995 Msa0993020:intron 35.0%
AGTAGAAACTACTTTCAGCA+AGG - chr6_4:64225109-64225128 Msa0993020:intron 35.0%
! ATTTAAGACATGGGCTAAGT+GGG - chr6_4:64225180-64225199 Msa0993020:intron 35.0%
TATTGAAATTGGGTTTCTGC+AGG - chr6_4:64223977-64223996 Msa0993020:intron 35.0%
GTGGGTTCTTTATGTAGAAT+TGG - chr6_4:64224093-64224112 Msa0993020:CDS 35.0%
ATATAACAGTGACAATGTCG+GGG - chr6_4:64224129-64224148 Msa0993020:CDS 35.0%
TAGTTAGTCATAAGGTCTGT+AGG - chr6_4:64224437-64224456 Msa0993020:CDS 35.0%
TCAATTCCTTCAATGAAGAG+AGG - chr6_4:64224472-64224491 Msa0993020:intron 35.0%
AAATCACTATAGTGCTGTAG+TGG - chr6_4:64224569-64224588 Msa0993020:intron 35.0%
! TGTACCAGTGTTGTTAATCA+CGG + chr6_4:64224637-64224656 None:intergenic 35.0%
! ATAGAGCTTTTGCTTGCATA+AGG - chr6_4:64224759-64224778 Msa0993020:intron 35.0%
CCATTCTTGTACAAGAAATG+GGG + chr6_4:64224862-64224881 None:intergenic 35.0%
TTCCTCAAAGAGAAACTCTT+AGG - chr6_4:64224904-64224923 Msa0993020:intron 35.0%
! TCATTTTCAACACAGGATAC+TGG - chr6_4:64224976-64224995 Msa0993020:intron 35.0%
AGTAGAAACTACTTTCAGCA+AGG - chr6_4:64225109-64225128 Msa0993020:intron 35.0%
! ATTTAAGACATGGGCTAAGT+GGG - chr6_4:64225180-64225199 Msa0993020:intron 35.0%
AATATGAGCATCACAACACC+AGG + chr6_4:64223813-64223832 None:intergenic 40.0%
GCAAACCCTATGAATCTGAA+GGG - chr6_4:64223999-64224018 Msa0993020:intron 40.0%
CAAACCCTATGAATCTGAAG+GGG - chr6_4:64224000-64224019 Msa0993020:intron 40.0%
!!! TGATTTGCCTTTTTTGTGGG+TGG - chr6_4:64224312-64224331 Msa0993020:CDS 40.0%
TGAAATGCCACCCACAAAAA+AGG + chr6_4:64224322-64224341 None:intergenic 40.0%
GGATGTTGGATGTGTTTGTT+TGG - chr6_4:64224725-64224744 Msa0993020:intron 40.0%
TGGGGATTTCACAATGTCTA+TGG + chr6_4:64224844-64224863 None:intergenic 40.0%
CCCCATTTCTTGTACAAGAA+TGG - chr6_4:64224859-64224878 Msa0993020:intron 40.0%
AGCCTAAGAGTTTCTCTTTG+AGG + chr6_4:64224909-64224928 None:intergenic 40.0%
! TTTTCAACACAGGATACTGG+TGG - chr6_4:64224979-64224998 Msa0993020:intron 40.0%
! CATTTAAGACATGGGCTAAG+TGG - chr6_4:64225179-64225198 Msa0993020:intron 40.0%
TCTATGGCTGAAATTTGCAG+AGG - chr6_4:64225346-64225365 Msa0993020:intron 40.0%
CTATGGCTGAAATTTGCAGA+GGG - chr6_4:64225347-64225366 Msa0993020:intron 40.0%
TATGGCTGAAATTTGCAGAG+GGG - chr6_4:64225348-64225367 Msa0993020:intron 40.0%
! AACTCTGGAGGTAAATGTGA+TGG - chr6_4:64225379-64225398 Msa0993020:intron 40.0%
! ACTCTGGAGGTAAATGTGAT+GGG - chr6_4:64225380-64225399 Msa0993020:intron 40.0%
TGCAGCATATCCATTGACAA+TGG - chr6_4:64225435-64225454 Msa0993020:intron 40.0%
GCAGCATATCCATTGACAAT+GGG - chr6_4:64225436-64225455 Msa0993020:intron 40.0%
TCGACAATTCCCATTGTCAA+TGG + chr6_4:64225448-64225467 None:intergenic 40.0%
AATATGAGCATCACAACACC+AGG + chr6_4:64223813-64223832 None:intergenic 40.0%
GCAAACCCTATGAATCTGAA+GGG - chr6_4:64223999-64224018 Msa0993020:intron 40.0%
CAAACCCTATGAATCTGAAG+GGG - chr6_4:64224000-64224019 Msa0993020:intron 40.0%
!!! TGATTTGCCTTTTTTGTGGG+TGG - chr6_4:64224312-64224331 Msa0993020:CDS 40.0%
TGAAATGCCACCCACAAAAA+AGG + chr6_4:64224322-64224341 None:intergenic 40.0%
GGATGTTGGATGTGTTTGTT+TGG - chr6_4:64224725-64224744 Msa0993020:intron 40.0%
TGGGGATTTCACAATGTCTA+TGG + chr6_4:64224844-64224863 None:intergenic 40.0%
CCCCATTTCTTGTACAAGAA+TGG - chr6_4:64224859-64224878 Msa0993020:intron 40.0%
AGCCTAAGAGTTTCTCTTTG+AGG + chr6_4:64224909-64224928 None:intergenic 40.0%
! TTTTCAACACAGGATACTGG+TGG - chr6_4:64224979-64224998 Msa0993020:intron 40.0%
! CATTTAAGACATGGGCTAAG+TGG - chr6_4:64225179-64225198 Msa0993020:intron 40.0%
TCTATGGCTGAAATTTGCAG+AGG - chr6_4:64225346-64225365 Msa0993020:intron 40.0%
CTATGGCTGAAATTTGCAGA+GGG - chr6_4:64225347-64225366 Msa0993020:intron 40.0%
TATGGCTGAAATTTGCAGAG+GGG - chr6_4:64225348-64225367 Msa0993020:intron 40.0%
! AACTCTGGAGGTAAATGTGA+TGG - chr6_4:64225379-64225398 Msa0993020:intron 40.0%
! ACTCTGGAGGTAAATGTGAT+GGG - chr6_4:64225380-64225399 Msa0993020:intron 40.0%
TGCAGCATATCCATTGACAA+TGG - chr6_4:64225435-64225454 Msa0993020:intron 40.0%
GCAGCATATCCATTGACAAT+GGG - chr6_4:64225436-64225455 Msa0993020:intron 40.0%
TCGACAATTCCCATTGTCAA+TGG + chr6_4:64225448-64225467 None:intergenic 40.0%
GGCAAACCCTATGAATCTGA+AGG - chr6_4:64223998-64224017 Msa0993020:intron 45.0%
ACTGCCCCTTCAGATTCATA+GGG + chr6_4:64224007-64224026 None:intergenic 45.0%
GACAATGTCGGGGACTAATT+TGG - chr6_4:64224139-64224158 Msa0993020:CDS 45.0%
AATGTCGGGGACTAATTTGG+TGG - chr6_4:64224142-64224161 Msa0993020:CDS 45.0%
!! TAAGGTCTGTAGGAGTGCTT+AGG - chr6_4:64224447-64224466 Msa0993020:CDS 45.0%
!! AAGGTCTGTAGGAGTGCTTA+GGG - chr6_4:64224448-64224467 Msa0993020:CDS 45.0%
CACTCTCCTCTCTTCATTGA+AGG + chr6_4:64224481-64224500 None:intergenic 45.0%
CTTCAATGAAGAGAGGAGAG+TGG - chr6_4:64224479-64224498 Msa0993020:intron 45.0%
! CCAGTGTTGTTAATCACGGA+TGG + chr6_4:64224633-64224652 None:intergenic 45.0%
CCATCCGTGATTAACAACAC+TGG - chr6_4:64224630-64224649 Msa0993020:intron 45.0%
AGGACATGACTAAGACAGCA+TGG + chr6_4:64224691-64224710 None:intergenic 45.0%
GTCTTAGTCATGTCCTTGCA+TGG - chr6_4:64224695-64224714 Msa0993020:intron 45.0%
ATGTCCTTGCATGGTGTGTT+AGG - chr6_4:64224704-64224723 Msa0993020:intron 45.0%
ACATCCTAACACACCATGCA+AGG + chr6_4:64224711-64224730 None:intergenic 45.0%
TGCATGGTGTGTTAGGATGT+TGG - chr6_4:64224711-64224730 Msa0993020:intron 45.0%
TGATAGCAAGCACACGTACA+AGG - chr6_4:64225216-64225235 Msa0993020:intron 45.0%
GATAGCAAGCACACGTACAA+GGG - chr6_4:64225217-64225236 Msa0993020:intron 45.0%
!! CGTACAAGGGTCTTTTTCAC+TGG - chr6_4:64225230-64225249 Msa0993020:intron 45.0%
ATGGCTGAAATTTGCAGAGG+GGG - chr6_4:64225349-64225368 Msa0993020:intron 45.0%
! CTCTGGAGGTAAATGTGATG+GGG - chr6_4:64225381-64225400 Msa0993020:intron 45.0%
GAAACACTAGCGCTAGTCAA+TGG + chr6_4:64225528-64225547 None:intergenic 45.0%
GGCAAACCCTATGAATCTGA+AGG - chr6_4:64223998-64224017 Msa0993020:intron 45.0%
ACTGCCCCTTCAGATTCATA+GGG + chr6_4:64224007-64224026 None:intergenic 45.0%
GACAATGTCGGGGACTAATT+TGG - chr6_4:64224139-64224158 Msa0993020:CDS 45.0%
AATGTCGGGGACTAATTTGG+TGG - chr6_4:64224142-64224161 Msa0993020:CDS 45.0%
!! TAAGGTCTGTAGGAGTGCTT+AGG - chr6_4:64224447-64224466 Msa0993020:CDS 45.0%
!! AAGGTCTGTAGGAGTGCTTA+GGG - chr6_4:64224448-64224467 Msa0993020:CDS 45.0%
CACTCTCCTCTCTTCATTGA+AGG + chr6_4:64224481-64224500 None:intergenic 45.0%
CTTCAATGAAGAGAGGAGAG+TGG - chr6_4:64224479-64224498 Msa0993020:intron 45.0%
! CCAGTGTTGTTAATCACGGA+TGG + chr6_4:64224633-64224652 None:intergenic 45.0%
CCATCCGTGATTAACAACAC+TGG - chr6_4:64224630-64224649 Msa0993020:intron 45.0%
AGGACATGACTAAGACAGCA+TGG + chr6_4:64224691-64224710 None:intergenic 45.0%
GTCTTAGTCATGTCCTTGCA+TGG - chr6_4:64224695-64224714 Msa0993020:intron 45.0%
ATGTCCTTGCATGGTGTGTT+AGG - chr6_4:64224704-64224723 Msa0993020:intron 45.0%
ACATCCTAACACACCATGCA+AGG + chr6_4:64224711-64224730 None:intergenic 45.0%
TGCATGGTGTGTTAGGATGT+TGG - chr6_4:64224711-64224730 Msa0993020:intron 45.0%
TGATAGCAAGCACACGTACA+AGG - chr6_4:64225216-64225235 Msa0993020:intron 45.0%
GATAGCAAGCACACGTACAA+GGG - chr6_4:64225217-64225236 Msa0993020:intron 45.0%
!! CGTACAAGGGTCTTTTTCAC+TGG - chr6_4:64225230-64225249 Msa0993020:intron 45.0%
ATGGCTGAAATTTGCAGAGG+GGG - chr6_4:64225349-64225368 Msa0993020:intron 45.0%
! CTCTGGAGGTAAATGTGATG+GGG - chr6_4:64225381-64225400 Msa0993020:intron 45.0%
GAAACACTAGCGCTAGTCAA+TGG + chr6_4:64225528-64225547 None:intergenic 45.0%
CACTGCCCCTTCAGATTCAT+AGG + chr6_4:64224008-64224027 None:intergenic 50.0%
TGAGCTTCTTGCTGCTAAGC+AGG - chr6_4:64224031-64224050 Msa0993020:intron 50.0%
AGAGGAGAGTGGAGTTCAGA+TGG - chr6_4:64224490-64224509 Msa0993020:intron 50.0%
!! ATATCGGCTCTGCAGTGTTG+TGG - chr6_4:64224537-64224556 Msa0993020:intron 50.0%
!! CGTGTGCTTGCTATCAACTG+TGG + chr6_4:64225212-64225231 None:intergenic 50.0%
TGGCTGAAATTTGCAGAGGG+GGG - chr6_4:64225350-64225369 Msa0993020:intron 50.0%
CACTGCCCCTTCAGATTCAT+AGG + chr6_4:64224008-64224027 None:intergenic 50.0%
TGAGCTTCTTGCTGCTAAGC+AGG - chr6_4:64224031-64224050 Msa0993020:intron 50.0%
AGAGGAGAGTGGAGTTCAGA+TGG - chr6_4:64224490-64224509 Msa0993020:intron 50.0%
!! ATATCGGCTCTGCAGTGTTG+TGG - chr6_4:64224537-64224556 Msa0993020:intron 50.0%
!! CGTGTGCTTGCTATCAACTG+TGG + chr6_4:64225212-64225231 None:intergenic 50.0%
TGGCTGAAATTTGCAGAGGG+GGG - chr6_4:64225350-64225369 Msa0993020:intron 50.0%
GCTTCTTGCTGCTAAGCAGG+TGG - chr6_4:64224034-64224053 Msa0993020:intron 55.0%
TGAAATTTGCAGAGGGGGGC+AGG - chr6_4:64225354-64225373 Msa0993020:intron 55.0%
GAAATTTGCAGAGGGGGGCA+GGG - chr6_4:64225355-64225374 Msa0993020:intron 55.0%
AAATTTGCAGAGGGGGGCAG+GGG - chr6_4:64225356-64225375 Msa0993020:intron 55.0%
GCTTCTTGCTGCTAAGCAGG+TGG - chr6_4:64224034-64224053 Msa0993020:intron 55.0%
TGAAATTTGCAGAGGGGGGC+AGG - chr6_4:64225354-64225373 Msa0993020:intron 55.0%
GAAATTTGCAGAGGGGGGCA+GGG - chr6_4:64225355-64225374 Msa0993020:intron 55.0%
AAATTTGCAGAGGGGGGCAG+GGG - chr6_4:64225356-64225375 Msa0993020:intron 55.0%
AGAGGGGGGCAGGGGAACTC+TGG - chr6_4:64225364-64225383 Msa0993020:intron 70.0%
AGAGGGGGGCAGGGGAACTC+TGG - chr6_4:64225364-64225383 Msa0993020:intron 70.0%
GGGGGGCAGGGGAACTCTGG+AGG - chr6_4:64225367-64225386 Msa0993020:intron 75.0%
GGGGGGCAGGGGAACTCTGG+AGG - chr6_4:64225367-64225386 Msa0993020:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 64223724 64225586 64223724 ID=Msa0993020;Name=Msa0993020
chr6_4 mRNA 64223724 64225586 64223724 ID=Msa0993020-mRNA-1;Parent=Msa0993020;Name=Msa0993020-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.25|0.4|0.8|1|1|5|100|168
chr6_4 exon 64223724 64223944 64223724 ID=Msa0993020-mRNA-1:exon:12148;Parent=Msa0993020-mRNA-1
chr6_4 exon 64224080 64224199 64224080 ID=Msa0993020-mRNA-1:exon:12147;Parent=Msa0993020-mRNA-1
chr6_4 exon 64224286 64224482 64224286 ID=Msa0993020-mRNA-1:exon:12146;Parent=Msa0993020-mRNA-1
chr6_4 exon 64225255 64225311 64225255 ID=Msa0993020-mRNA-1:exon:12145;Parent=Msa0993020-mRNA-1
chr6_4 exon 64225575 64225586 64225575 ID=Msa0993020-mRNA-1:exon:12144;Parent=Msa0993020-mRNA-1
chr6_4 CDS 64225575 64225586 64225575 ID=Msa0993020-mRNA-1:cds;Parent=Msa0993020-mRNA-1
chr6_4 CDS 64225255 64225311 64225255 ID=Msa0993020-mRNA-1:cds;Parent=Msa0993020-mRNA-1
chr6_4 CDS 64224286 64224482 64224286 ID=Msa0993020-mRNA-1:cds;Parent=Msa0993020-mRNA-1
chr6_4 CDS 64224080 64224199 64224080 ID=Msa0993020-mRNA-1:cds;Parent=Msa0993020-mRNA-1
chr6_4 CDS 64223824 64223944 64223824 ID=Msa0993020-mRNA-1:cds;Parent=Msa0993020-mRNA-1
chr6_4 three_prime_UTR 64223724 64223823 64223724 ID=Msa0993020-mRNA-1:three_prime_utr;Parent=Msa0993020-mRNA-1
Gene Sequence

>Msa0993020

ATGATCCTAATTGCAAACCCTATGAATCTGAAGGGGCAGTGTCATGAGCTTCTTGCTGCTAAGCAGGTGGATTATGGATGCTCCATAGACATTGTGAAATCCCCATTTCTTGTACAAGAATGGAAAGTGTCACGTAACGATGAAGTTCCTCAAAGAGAAACTCTTAGGCTTGATATGATTCAAGCTTCCAAGTCTCAATATTATGATGCTGATATAATCATTTTCAACACAGGATACTGGTGGAATCATGAAAAGACAAAAAATGGTAGAAACTACTTTCAGCAAGGTAATCATGTCTATGACAGATTAGAAGTTTCTGAAGCATTACAACAAGCATTTAAGACATGGGCTAAGTGGGTTGATTCCACAGTTGATAGCAAGCACACAGGGGGGCAGGGGAACTCTGGAGGTAAATGTGATGGGGAGAGACAACCCATTACAAATGAAAGCTATCTTGCAGCATATCCATTGACAATGGGAATTGTCGAAGATGTTATATGTGTGTGA

Protein sequence

>Msa0993020

MILIANPMNLKGQCHELLAAKQVDYGCSIDIVKSPFLVQEWKVSRNDEVPQRETLRLDMIQASKSQYYDADIIIFNTGYWWNHEKTKNGRNYFQQGNHVYDRLEVSEALQQAFKTWAKWVDSTVDSKHTGGQGNSGGKCDGERQPITNESYLAAYPLTMGIVEDVICV*