Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520750 | XP_003609734.2 | 81.098 | 164 | 17 | 2 | 75 | 224 | 226 | 389 | 3.72e-85 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520750 | sp|Q9FJ06|TBL4_ARATH | 50.299 | 167 | 67 | 4 | 73 | 224 | 210 | 375 | 1.51e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520750 | G7JMR6 | 81.098 | 164 | 17 | 2 | 75 | 224 | 226 | 389 | 1.78e-85 | 270 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa0520750 | 0.832648 | 8.385440e-56 | -8.615850e-47 |
| Msa0014710 | Msa0520750 | 0.801994 | 6.922887e-49 | -8.615850e-47 |
| Msa0020300 | Msa0520750 | 0.801506 | 8.720325e-49 | -8.615850e-47 |
| Msa0028660 | Msa0520750 | 0.821063 | 4.925876e-53 | -8.615850e-47 |
| Msa0052640 | Msa0520750 | 0.807689 | 4.469941e-50 | -8.615850e-47 |
| Msa0052770 | Msa0520750 | 0.821890 | 3.174896e-53 | -8.615850e-47 |
| Msa0115270 | Msa0520750 | 0.801354 | 9.367624e-49 | -8.615850e-47 |
| Msa0165220 | Msa0520750 | 0.813528 | 2.445134e-51 | -8.615850e-47 |
| Msa0222890 | Msa0520750 | 0.812239 | 4.686298e-51 | -8.615850e-47 |
| Msa0383800 | Msa0520750 | 0.818045 | 2.405096e-52 | -8.615850e-47 |
| Msa0389340 | Msa0520750 | 0.809028 | 2.316887e-50 | -8.615850e-47 |
| Msa0404030 | Msa0520750 | 0.802505 | 5.435549e-49 | -8.615850e-47 |
| Msa0431880 | Msa0520750 | 0.871302 | 7.578228e-67 | -8.615850e-47 |
| Msa0434180 | Msa0520750 | 0.807296 | 5.416990e-50 | -8.615850e-47 |
| Msa0288100 | Msa0520750 | 0.809482 | 1.851265e-50 | -8.615850e-47 |
| Msa0309770 | Msa0520750 | 0.826037 | 3.378896e-54 | -8.615850e-47 |
| Msa0318980 | Msa0520750 | 0.803313 | 3.699927e-49 | -8.615850e-47 |
| Msa0351030 | Msa0520750 | 0.801331 | 9.469199e-49 | -8.615850e-47 |
| Msa0351810 | Msa0520750 | 0.809591 | 1.754315e-50 | -8.615850e-47 |
| Msa0484780 | Msa0520750 | 0.810300 | 1.234250e-50 | -8.615850e-47 |
| Msa0520750 | Msa0562440 | 0.823644 | 1.239909e-53 | -8.615850e-47 |
| Msa0520750 | Msa0592440 | 0.820638 | 6.169549e-53 | -8.615850e-47 |
| Msa0520750 | Msa0593650 | 0.808801 | 2.591157e-50 | -8.615850e-47 |
| Msa0520750 | Msa0602390 | 0.814168 | 1.767340e-51 | -8.615850e-47 |
| Msa0520750 | Msa0621490 | 0.835715 | 1.427958e-56 | -8.615850e-47 |
| Msa0520750 | Msa0661190 | -0.808905 | 2.461504e-50 | -8.615850e-47 |
| Msa0520750 | Msa0663240 | 0.831371 | 1.733751e-55 | -8.615850e-47 |
| Msa0520750 | Msa0688480 | 0.818598 | 1.803379e-52 | -8.615850e-47 |
| Msa0520750 | Msa0689800 | 0.806906 | 6.551350e-50 | -8.615850e-47 |
| Msa0520750 | Msa0692230 | 0.820422 | 6.915691e-53 | -8.615850e-47 |
| Msa0520750 | Msa0716840 | 0.826282 | 2.954293e-54 | -8.615850e-47 |
| Msa0520750 | Msa0745790 | 0.812341 | 4.451342e-51 | -8.615850e-47 |
| Msa0520750 | Msa0777230 | 0.800343 | 1.506609e-48 | -8.615850e-47 |
| Msa0520750 | Msa0804230 | 0.827154 | 1.829383e-54 | -8.615850e-47 |
| Msa0520750 | Msa0860430 | 0.801330 | 9.473237e-49 | -8.615850e-47 |
| Msa0520750 | Msa0925250 | 0.816076 | 6.662140e-52 | -8.615850e-47 |
| Msa0520750 | Msa0925290 | 0.820920 | 5.314794e-53 | -8.615850e-47 |
| Msa0520750 | Msa0935410 | 0.800470 | 1.419496e-48 | -8.615850e-47 |
| Msa0520750 | Msa0938220 | 0.804590 | 2.008390e-49 | -8.615850e-47 |
| Msa0520750 | Msa0993020 | 0.810624 | 1.050760e-50 | -8.615850e-47 |
| Msa0520750 | Msa1014540 | 0.809578 | 1.765273e-50 | -8.615850e-47 |
| Msa0520750 | Msa1021540 | 0.801982 | 6.964340e-49 | -8.615850e-47 |
| Msa0520750 | Msa1082500 | 0.824060 | 9.904468e-54 | -8.615850e-47 |
| Msa0520750 | Msa1131220 | 0.805347 | 1.394669e-49 | -8.615850e-47 |
| Msa0520750 | Msa1172400 | 0.813305 | 2.737140e-51 | -8.615850e-47 |
| Msa0520750 | Msa1173140 | 0.823764 | 1.161973e-53 | -8.615850e-47 |
| Msa0520750 | Msa1194920 | 0.818632 | 1.771441e-52 | -8.615850e-47 |
| Msa0520750 | Msa1195080 | 0.801665 | 8.090559e-49 | -8.615850e-47 |
| Msa0520750 | Msa1203250 | 0.823272 | 1.514315e-53 | -8.615850e-47 |
| Msa0520750 | Msa1233890 | 0.824626 | 7.288853e-54 | -8.615850e-47 |
| Msa0520750 | Msa1244250 | 0.804026 | 2.631454e-49 | -8.615850e-47 |
| Msa0520750 | Msa1298260 | 0.817092 | 3.944916e-52 | -8.615850e-47 |
| Msa0520750 | Msa1333410 | 0.811687 | 6.181418e-51 | -8.615850e-47 |
| Msa0520750 | Msa1368590 | 0.891881 | 2.649928e-74 | -8.615850e-47 |
| Msa0520750 | Msa1371430 | 0.803798 | 2.935486e-49 | -8.615850e-47 |
| Msa0520750 | Msa1384350 | 0.808482 | 3.031516e-50 | -8.615850e-47 |
| Msa0520750 | Msa1403480 | 0.827746 | 1.319263e-54 | -8.615850e-47 |
| Msa0520750 | Msa1411020 | 0.814901 | 1.216549e-51 | -8.615850e-47 |
| Msa0520750 | Msa1420290 | 0.823192 | 1.580906e-53 | -8.615850e-47 |
| Msa0520750 | Msa1420490 | 0.816382 | 5.691075e-52 | -8.615850e-47 |
| Msa0520750 | Msa1423390 | 0.816130 | 6.479118e-52 | -8.615850e-47 |
| Msa0520750 | Msa1424290 | 0.810071 | 1.382988e-50 | -8.615850e-47 |
| Msa0520750 | Msa1434350 | 0.809562 | 1.779380e-50 | -8.615850e-47 |
| Msa0520750 | Msa1439320 | 0.814316 | 1.639731e-51 | -8.615850e-47 |
| Msa0520750 | Msa1440370 | 0.818528 | 1.869804e-52 | -8.615850e-47 |
| Msa0520750 | Msa1440810 | 0.816050 | 6.753370e-52 | -8.615850e-47 |
| Msa0520750 | Msa1440910 | 0.806387 | 8.430112e-50 | -8.615850e-47 |
| Msa0520750 | Msa1443060 | 0.815920 | 7.219019e-52 | -8.615850e-47 |
| Msa0520750 | Msa1454120 | 0.806807 | 6.876296e-50 | -8.615850e-47 |
| Msa0520750 | Msa1455490 | 0.810413 | 1.167122e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520750 | MtrunA17_Chr4g0068111 | 81.098 | 164 | 17 | 2 | 75 | 224 | 226 | 389 | 3.43e-89 | 270 |
| Msa0520750 | MtrunA17_Chr7g0258851 | 47.134 | 157 | 69 | 2 | 81 | 224 | 366 | 521 | 8.18e-45 | 157 |
| Msa0520750 | MtrunA17_Chr1g0175671 | 39.013 | 223 | 102 | 6 | 33 | 224 | 224 | 443 | 4.77e-44 | 154 |
| Msa0520750 | MtrunA17_Chr8g0368461 | 47.771 | 157 | 67 | 2 | 81 | 224 | 308 | 462 | 4.64e-43 | 152 |
| Msa0520750 | MtrunA17_Chr1g0213281 | 41.081 | 185 | 92 | 4 | 54 | 224 | 268 | 449 | 1.93e-42 | 150 |
| Msa0520750 | MtrunA17_Chr5g0413271 | 45.570 | 158 | 71 | 2 | 80 | 224 | 255 | 410 | 1.78e-40 | 144 |
| Msa0520750 | MtrunA17_Chr4g0071391 | 39.490 | 157 | 81 | 2 | 81 | 224 | 227 | 382 | 8.27e-34 | 125 |
| Msa0520750 | MtrunA17_Chr1g0150371 | 94.545 | 55 | 2 | 1 | 27 | 81 | 61 | 114 | 5.75e-29 | 106 |
| Msa0520750 | MtrunA17_Chr7g0269991 | 36.667 | 180 | 97 | 4 | 58 | 224 | 233 | 408 | 6.94e-28 | 110 |
| Msa0520750 | MtrunA17_Chr3g0105301 | 31.098 | 164 | 86 | 3 | 82 | 224 | 155 | 312 | 2.19e-19 | 85.5 |
| Msa0520750 | MtrunA17_Chr2g0287901 | 28.947 | 152 | 94 | 2 | 65 | 203 | 200 | 350 | 2.43e-16 | 77.0 |
| Msa0520750 | MtrunA17_Chr7g0259711 | 29.412 | 153 | 92 | 3 | 65 | 203 | 194 | 344 | 3.05e-16 | 77.0 |
| Msa0520750 | MtrunA17_Chr4g0045951 | 27.184 | 206 | 115 | 6 | 45 | 224 | 110 | 306 | 7.24e-16 | 75.5 |
| Msa0520750 | MtrunA17_Chr4g0045941 | 26.220 | 164 | 96 | 4 | 77 | 224 | 140 | 294 | 1.35e-14 | 71.6 |
| Msa0520750 | MtrunA17_Chr1g0171171 | 24.528 | 159 | 106 | 2 | 75 | 224 | 157 | 310 | 1.73e-14 | 71.6 |
| Msa0520750 | MtrunA17_Chr3g0126021 | 33.645 | 107 | 71 | 0 | 81 | 187 | 251 | 357 | 3.73e-14 | 70.9 |
| Msa0520750 | MtrunA17_Chr2g0283581 | 24.375 | 160 | 96 | 4 | 81 | 224 | 152 | 302 | 4.47e-14 | 70.5 |
| Msa0520750 | MtrunA17_Chr5g0430371 | 32.075 | 106 | 66 | 1 | 82 | 187 | 170 | 269 | 4.53e-14 | 70.5 |
| Msa0520750 | MtrunA17_Chr1g0210771 | 28.261 | 138 | 85 | 2 | 82 | 210 | 170 | 302 | 1.50e-13 | 68.9 |
| Msa0520750 | MtrunA17_Chr8g0384151 | 26.250 | 160 | 105 | 2 | 28 | 187 | 168 | 314 | 3.99e-13 | 67.8 |
| Msa0520750 | MtrunA17_Chr2g0314801 | 30.233 | 129 | 74 | 3 | 111 | 224 | 169 | 296 | 4.44e-13 | 67.4 |
| Msa0520750 | MtrunA17_Chr2g0314791 | 31.429 | 140 | 81 | 4 | 82 | 214 | 148 | 279 | 8.20e-13 | 66.6 |
| Msa0520750 | MtrunA17_Chr4g0005491 | 27.053 | 207 | 121 | 8 | 41 | 224 | 137 | 336 | 2.92e-12 | 65.1 |
| Msa0520750 | MtrunA17_Chr2g0325481 | 27.848 | 158 | 93 | 4 | 81 | 224 | 161 | 311 | 8.96e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520750 | AT5G49340.1 | 50.299 | 167 | 67 | 4 | 73 | 224 | 210 | 375 | 1.54e-46 | 160 |
| Msa0520750 | AT3G12060.1 | 45.223 | 157 | 72 | 2 | 81 | 224 | 314 | 469 | 6.73e-44 | 155 |
| Msa0520750 | AT5G06700.1 | 44.586 | 157 | 73 | 2 | 81 | 224 | 373 | 528 | 4.12e-43 | 153 |
| Msa0520750 | AT1G60790.1 | 46.951 | 164 | 72 | 3 | 75 | 224 | 303 | 465 | 5.13e-41 | 147 |
| Msa0520750 | AT5G20590.1 | 38.217 | 157 | 83 | 2 | 81 | 224 | 260 | 415 | 2.81e-34 | 128 |
| Msa0520750 | AT3G62390.1 | 37.179 | 156 | 82 | 3 | 82 | 224 | 257 | 409 | 3.02e-30 | 117 |
| Msa0520750 | AT5G20590.2 | 40.952 | 105 | 61 | 1 | 81 | 185 | 260 | 363 | 1.62e-24 | 100 |
| Msa0520750 | AT3G62390.2 | 40.566 | 106 | 61 | 1 | 82 | 187 | 257 | 360 | 1.13e-23 | 98.2 |
| Msa0520750 | AT5G19160.1 | 32.386 | 176 | 100 | 4 | 51 | 212 | 191 | 361 | 2.67e-23 | 97.4 |
| Msa0520750 | AT5G58600.1 | 31.765 | 170 | 83 | 5 | 59 | 209 | 163 | 318 | 2.15e-21 | 91.7 |
| Msa0520750 | AT5G19160.2 | 34.783 | 138 | 84 | 3 | 51 | 187 | 191 | 323 | 3.48e-21 | 90.5 |
| Msa0520750 | AT5G58600.2 | 33.846 | 130 | 71 | 3 | 59 | 187 | 163 | 278 | 2.12e-19 | 84.7 |
| Msa0520750 | AT3G06080.2 | 29.101 | 189 | 114 | 5 | 51 | 224 | 195 | 378 | 2.38e-19 | 86.3 |
| Msa0520750 | AT3G06080.1 | 31.884 | 138 | 88 | 3 | 51 | 187 | 195 | 327 | 3.15e-17 | 79.7 |
| Msa0520750 | AT3G11570.1 | 26.974 | 152 | 98 | 1 | 86 | 224 | 205 | 356 | 1.63e-16 | 78.2 |
| Msa0520750 | AT1G29050.1 | 24.272 | 206 | 122 | 5 | 45 | 224 | 126 | 323 | 2.21e-15 | 74.7 |
| Msa0520750 | AT1G48880.1 | 28.750 | 160 | 101 | 2 | 28 | 187 | 193 | 339 | 4.83e-15 | 73.9 |
| Msa0520750 | AT1G78710.1 | 28.155 | 206 | 114 | 8 | 45 | 224 | 102 | 299 | 1.42e-14 | 72.0 |
| Msa0520750 | AT5G06230.2 | 27.044 | 159 | 102 | 2 | 65 | 210 | 130 | 287 | 7.41e-14 | 70.1 |
| Msa0520750 | AT5G06230.1 | 27.044 | 159 | 102 | 2 | 65 | 210 | 171 | 328 | 8.33e-14 | 70.1 |
| Msa0520750 | AT2G31110.1 | 24.845 | 161 | 96 | 4 | 80 | 224 | 7 | 158 | 2.55e-13 | 67.0 |
| Msa0520750 | AT2G31110.2 | 25.625 | 160 | 94 | 4 | 81 | 224 | 156 | 306 | 2.81e-13 | 68.6 |
| Msa0520750 | AT2G30900.1 | 31.013 | 158 | 86 | 5 | 83 | 224 | 158 | 308 | 7.63e-12 | 64.3 |
| Msa0520750 | AT3G54260.1 | 24.812 | 133 | 89 | 3 | 82 | 208 | 162 | 289 | 2.35e-11 | 62.8 |
| Msa0520750 | AT2G30010.2 | 23.596 | 178 | 104 | 5 | 73 | 224 | 203 | 374 | 4.48e-11 | 62.0 |
| Msa0520750 | AT2G30010.1 | 23.596 | 178 | 104 | 5 | 73 | 224 | 160 | 331 | 4.50e-11 | 62.0 |
Find 53 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATGTTAATTAGGATTA+TGG | 0.236100 | 3_4:-73280645 | Msa0520750:intron |
| TTCCATTCTTGTACAAGAAA+TGG | 0.283805 | 3_4:+73280597 | None:intergenic |
| ACCTAACATACTTCCTATAA+TGG | 0.306753 | 3_4:+73279982 | None:intergenic |
| GTGCAGGATTTGATTGATAA+AGG | 0.344148 | 3_4:-73281460 | Msa0520750:intron |
| ATTAAATAAATTTAAATGCC+TGG | 0.346786 | 3_4:-73279785 | None:intergenic |
| CACTGCCCCTTCAGATTCAT+AGG | 0.352061 | 3_4:+73281724 | None:intergenic |
| TCCATTCTTGTACAAGAAAT+GGG | 0.352802 | 3_4:+73280598 | None:intergenic |
| TGGGGATTTCACAATGTCTA+TGG | 0.361987 | 3_4:+73280617 | None:intergenic |
| CCCCATTTCTTGTACAAGAA+TGG | 0.370184 | 3_4:-73280599 | Msa0520750:CDS |
| AAGATAGCTTTCATTTGTAA+TGG | 0.380265 | 3_4:+73280057 | None:intergenic |
| TTCCTCAAAGAGAAACTCTT+AGG | 0.383679 | 3_4:-73280554 | Msa0520750:CDS |
| AGCCTAAGAGTTTCTCTTTG+AGG | 0.386378 | 3_4:+73280552 | None:intergenic |
| AGATAGCTTTCATTTGTAAT+GGG | 0.396515 | 3_4:+73280058 | None:intergenic |
| TCATCATCTTCACTAGTAAA+GGG | 0.406935 | 3_4:+73281376 | None:intergenic |
| CGCATTCACTAACTTCAAAC+AGG | 0.413377 | 3_4:-73281353 | Msa0520750:intron |
| ATATGTGTGTGATCCATTAT+AGG | 0.428230 | 3_4:-73279995 | Msa0520750:exon |
| TCGACAATTCCCATTGTCAA+TGG | 0.442380 | 3_4:+73280025 | None:intergenic |
| TTAAATAAATTTAAATGCCT+GGG | 0.445165 | 3_4:-73279784 | None:intergenic |
| GTCATCATCTTCACTAGTAA+AGG | 0.461764 | 3_4:+73281375 | None:intergenic |
| TGAGCTTCTTGCTGCTAAGC+AGG | 0.466569 | 3_4:-73281698 | Msa0520750:CDS |
| AGGATGAGACATTATCAATC+GGG | 0.489141 | 3_4:-73279933 | Msa0520750:three_prime_UTR |
| AAGGATGAGACATTATCAAT+CGG | 0.498917 | 3_4:-73279934 | Msa0520750:three_prime_UTR |
| TCCATTATAGGAAGTATGTT+AGG | 0.502786 | 3_4:-73279983 | Msa0520750:three_prime_UTR |
| CATTTAAGACATGGGCTAAG+TGG | 0.503496 | 3_4:-73280279 | Msa0520750:CDS |
| CTTGCGGTGGGAGAATCCGC+AGG | 0.518468 | 3_4:+73284020 | None:intergenic |
| TAGAAATTTAGTGCAGCGTA+TGG | 0.518555 | 3_4:-73281416 | Msa0520750:CDS |
| AACTCTGGAGGTAAATGTGA+TGG | 0.519732 | 3_4:-73280091 | Msa0520750:CDS |
| GGCAAACCCTATGAATCTGA+AGG | 0.520434 | 3_4:-73281731 | Msa0520750:CDS |
| GGAAGTATGTTAGGTGGTGT+TGG | 0.525857 | 3_4:-73279974 | Msa0520750:three_prime_UTR |
| GCAGCATATCCATTGACAAT+GGG | 0.531435 | 3_4:-73280034 | Msa0520750:CDS |
| ATTTAAGACATGGGCTAAGT+GGG | 0.550470 | 3_4:-73280278 | Msa0520750:CDS |
| ACTGCCCCTTCAGATTCATA+GGG | 0.561633 | 3_4:+73281725 | None:intergenic |
| ACTCTGGAGGTAAATGTGAT+GGG | 0.561757 | 3_4:-73280090 | Msa0520750:CDS |
| GGTGGGAGAATCCGCAGGAA+AGG | 0.578166 | 3_4:+73284025 | None:intergenic |
| CCATTCTTGTACAAGAAATG+GGG | 0.584992 | 3_4:+73280599 | None:intergenic |
| TACAACAAGCATTTAAGACA+TGG | 0.597685 | 3_4:-73280288 | Msa0520750:CDS |
| AGCATCATAATATTGAGACT+TGG | 0.603108 | 3_4:+73280512 | None:intergenic |
| TGCAGCATATCCATTGACAA+TGG | 0.605023 | 3_4:-73280035 | Msa0520750:CDS |
| CAGCGTATGGAATCATCTGT+GGG | 0.612923 | 3_4:-73281403 | Msa0520750:CDS |
| GCAAACCCTATGAATCTGAA+GGG | 0.614234 | 3_4:-73281730 | Msa0520750:CDS |
| ACAACAAGCATTTAAGACAT+GGG | 0.616597 | 3_4:-73280287 | Msa0520750:CDS |
| GCAGCGTATGGAATCATCTG+TGG | 0.620380 | 3_4:-73281404 | Msa0520750:CDS |
| TATACTGTGGTCCTTTCCTG+CGG | 0.628763 | 3_4:-73284036 | Msa0520750:CDS |
| CATCATCTTCACTAGTAAAG+GGG | 0.629037 | 3_4:+73281377 | None:intergenic |
| AGTAGAAACTACTTTCAGCA+AGG | 0.629801 | 3_4:-73280349 | Msa0520750:CDS |
| CTCTGGAGGTAAATGTGATG+GGG | 0.640338 | 3_4:-73280089 | Msa0520750:CDS |
| GGATGAGACATTATCAATCG+GGG | 0.648771 | 3_4:-73279932 | Msa0520750:three_prime_UTR |
| CCCACCGCAAGAAAATCCGC+AGG | 0.653724 | 3_4:-73284008 | Msa0520750:intron |
| CGTGTGCTTGCTATCAACTG+TGG | 0.660073 | 3_4:+73280249 | None:intergenic |
| ATTATAGGAAGTATGTTAGG+TGG | 0.660255 | 3_4:-73279980 | Msa0520750:three_prime_UTR |
| ATGCGGGTATCGTTATACTG+TGG | 0.680419 | 3_4:-73284049 | Msa0520750:CDS |
| CAAACCCTATGAATCTGAAG+GGG | 0.696980 | 3_4:-73281729 | Msa0520750:CDS |
| GCTTCTTGCTGCTAAGCAGG+TGG | 0.701727 | 3_4:-73281695 | Msa0520750:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTAAATTTAATATTGTA+GGG | + | chr3_4:73280046-73280065 | None:intergenic | 10.0% |
| !! | CAATGTTAATATAAAATTAA+TGG | - | chr3_4:73280120-73280139 | Msa0520750:intron | 10.0% |
| !! | ATTTATATATAATTATGATG+AGG | + | chr3_4:73280313-73280332 | None:intergenic | 10.0% |
| !!! | ATTTTATCATATATTTTTGT+AGG | + | chr3_4:73280770-73280789 | None:intergenic | 10.0% |
| !! | GAACTTAAATTTAATATTGT+AGG | + | chr3_4:73280047-73280066 | None:intergenic | 15.0% |
| !! | CCAATGAAAAATATTTAAAT+AGG | + | chr3_4:73280148-73280167 | None:intergenic | 15.0% |
| !!! | CCTATTTAAATATTTTTCAT+TGG | - | chr3_4:73280145-73280164 | Msa0520750:intron | 15.0% |
| !!! | AAATGTGTATCTTTTTTATT+TGG | + | chr3_4:73280244-73280263 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr3_4:73280439-73280458 | None:intergenic | 15.0% |
| !! | AAACTAACTAATAGTTAATA+AGG | + | chr3_4:73280448-73280467 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr3_4:73280462-73280481 | Msa0520750:CDS | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | - | chr3_4:73280565-73280584 | Msa0520750:CDS | 15.0% |
| !!! | TTTAATCTAATTTGAGTTTT+AGG | - | chr3_4:73281555-73281574 | Msa0520750:intron | 15.0% |
| !!! | ACTTAGTAAAAATTGAATTT+TGG | - | chr3_4:73281642-73281661 | Msa0520750:intron | 15.0% |
| !! | TTGAAATAAATTAAGTAACA+AGG | + | chr3_4:73281804-73281823 | None:intergenic | 15.0% |
| !! | GTTAACAAACAAAATTAAAT+AGG | + | chr3_4:73281852-73281871 | None:intergenic | 15.0% |
| !! | TTGTAATAATATACATATGT+TGG | - | chr3_4:73282301-73282320 | Msa0520750:intron | 15.0% |
| !! | ATTATTAATAAGTAGTTCAA+AGG | - | chr3_4:73283436-73283455 | Msa0520750:intron | 15.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr3_4:73280405-73280424 | Msa0520750:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr3_4:73280525-73280544 | Msa0520750:CDS | 20.0% |
| !! | TATGATAAAATTAAAGTGAC+CGG | - | chr3_4:73280779-73280798 | Msa0520750:intron | 20.0% |
| !!! | GATTTTTCAATCAAAGATTT+GGG | + | chr3_4:73280839-73280858 | None:intergenic | 20.0% |
| !! | ATTAGATTAAACTCACAATT+AGG | + | chr3_4:73281546-73281565 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTTAGATTCTTA+CGG | - | chr3_4:73281571-73281590 | Msa0520750:intron | 20.0% |
| !!! | TAAAAATTGAATTTTGGAGA+AGG | - | chr3_4:73281648-73281667 | Msa0520750:intron | 20.0% |
| !! | ATTCACGAATATTATAACAA+AGG | + | chr3_4:73281874-73281893 | None:intergenic | 20.0% |
| !! | AATTAAAAAGAGTGAAAAAG+GGG | + | chr3_4:73282038-73282057 | None:intergenic | 20.0% |
| !! | GAATTAAAAAGAGTGAAAAA+GGG | + | chr3_4:73282039-73282058 | None:intergenic | 20.0% |
| !! | TGAATTAAAAAGAGTGAAAA+AGG | + | chr3_4:73282040-73282059 | None:intergenic | 20.0% |
| !! | ATGTGCTTTATATTGAAATT+GGG | - | chr3_4:73282073-73282092 | Msa0520750:intron | 20.0% |
| !!! | ATTCTAGAAATGATATACAA+GGG | + | chr3_4:73283005-73283024 | None:intergenic | 20.0% |
| !!! | AATTCTAGAAATGATATACA+AGG | + | chr3_4:73283006-73283025 | None:intergenic | 20.0% |
| !! | AATCATGAAAAGACAAAAAA+TGG | - | chr3_4:73283379-73283398 | Msa0520750:intron | 20.0% |
| !! | ATCATGAAAAGACAAAAAAT+GGG | - | chr3_4:73283380-73283399 | Msa0520750:intron | 20.0% |
| !!! | TGAAATTTCAGTGTTTTTAA+AGG | - | chr3_4:73283971-73283990 | Msa0520750:intron | 20.0% |
| ! | AAAATAAAATACAAATCCGC+AGG | + | chr3_4:73279917-73279936 | None:intergenic | 25.0% |
| !!! | ACTTACACCTTATGTTTTTT+TGG | - | chr3_4:73280268-73280287 | Msa0520750:CDS | 25.0% |
| ! | AAACCAACCAAAAAAACATA+AGG | + | chr3_4:73280278-73280297 | None:intergenic | 25.0% |
| ! | TCCAAGTTAATAGCATATAA+CGG | - | chr3_4:73280737-73280756 | Msa0520750:intron | 25.0% |
| !!! | CGATTTTTCAATCAAAGATT+TGG | + | chr3_4:73280840-73280859 | None:intergenic | 25.0% |
| !! | AGTGATTTTCACATAAATCT+AGG | + | chr3_4:73280977-73280996 | None:intergenic | 25.0% |
| !! | TGATCTAATCTATGAGTTTT+AGG | - | chr3_4:73281455-73281474 | Msa0520750:CDS | 25.0% |
| ! | ATTAAAAAGAGTGAAAAAGG+GGG | + | chr3_4:73282037-73282056 | None:intergenic | 25.0% |
| ! | TTCAATATAAAGCACATCAA+AGG | + | chr3_4:73282070-73282089 | None:intergenic | 25.0% |
| ! | GATGTGCTTTATATTGAAAT+TGG | - | chr3_4:73282072-73282091 | Msa0520750:intron | 25.0% |
| !! | TGTTATACTTCAATGCATTT+TGG | - | chr3_4:73282177-73282196 | Msa0520750:intron | 25.0% |
| ! | TATGTAGAATTGGATTTGAA+TGG | - | chr3_4:73282209-73282228 | Msa0520750:intron | 25.0% |
| ! | TAATATAACAGTGACAATGT+CGG | - | chr3_4:73282233-73282252 | Msa0520750:intron | 25.0% |
| !! | TATACATATGTTGGTTGAAT+TGG | - | chr3_4:73282310-73282329 | Msa0520750:intron | 25.0% |
| !! | ATACATATGTTGGTTGAATT+GGG | - | chr3_4:73282311-73282330 | Msa0520750:intron | 25.0% |
| ! | AAGAACACACATTCAAATAT+AGG | + | chr3_4:73282560-73282579 | None:intergenic | 25.0% |
| ! | TTACATGAACAAAATCAAAG+AGG | + | chr3_4:73282662-73282681 | None:intergenic | 25.0% |
| ! | TTGTCAAATAGCAGTTATAT+CGG | - | chr3_4:73282789-73282808 | Msa0520750:intron | 25.0% |
| !!! | TGCTAGTAGATTTTAACAAA+CGG | - | chr3_4:73282865-73282884 | Msa0520750:intron | 25.0% |
| ! | TACACTACTAGATTAAAGTT+AGG | - | chr3_4:73282921-73282940 | Msa0520750:intron | 25.0% |
| ! | AAACTACTATACTAACTTAC+AGG | + | chr3_4:73283051-73283070 | None:intergenic | 25.0% |
| ! | ATAGTAGTTTGACTGTAATT+TGG | - | chr3_4:73283061-73283080 | Msa0520750:intron | 25.0% |
| ! | TGTGATGTTAATTAGGATTA+TGG | - | chr3_4:73283190-73283209 | Msa0520750:intron | 25.0% |
| !! | GATATAATCATTTTCAACAC+AGG | - | chr3_4:73283346-73283365 | Msa0520750:intron | 25.0% |
| ! | TAGTTAAGTAATTGCTTCTA+TGG | - | chr3_4:73283695-73283714 | Msa0520750:intron | 25.0% |
| ! | AGATAGCTTTCATTTGTAAT+GGG | + | chr3_4:73283780-73283799 | None:intergenic | 25.0% |
| ! | AAGATAGCTTTCATTTGTAA+TGG | + | chr3_4:73283781-73283800 | None:intergenic | 25.0% |
| ! | ATTTTGTTGCGAAAATGTGT+TGG | - | chr3_4:73279871-73279890 | Msa0520750:three_prime_UTR | 30.0% |
| TTCTCTTTACATTGTGAACA+TGG | - | chr3_4:73280019-73280038 | Msa0520750:CDS | 30.0% | |
| TTGTTGCCAATACACTAATA+AGG | + | chr3_4:73280174-73280193 | None:intergenic | 30.0% | |
| ! | ATTAGTGTATTGGCAACAAT+AGG | - | chr3_4:73280175-73280194 | Msa0520750:intron | 30.0% |
| TAGGCTTCTATGAAAACAAT+TGG | - | chr3_4:73280194-73280213 | Msa0520750:intron | 30.0% | |
| !!! | ACACCTTATGTTTTTTTGGT+TGG | - | chr3_4:73280272-73280291 | Msa0520750:CDS | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr3_4:73280356-73280375 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr3_4:73280357-73280376 | Msa0520750:intron | 30.0% |
| !! | TTCATCCTTTACGTTTTTAG+CGG | + | chr3_4:73280696-73280715 | None:intergenic | 30.0% |
| AGAAACTGGAAGTAAAAACT+AGG | - | chr3_4:73281078-73281097 | Msa0520750:intron | 30.0% | |
| !! | AGAGAAAATGAAGTGTTGTA+TGG | - | chr3_4:73281134-73281153 | Msa0520750:intron | 30.0% |
| ! | TATACTTCAATGCATTTTGG+TGG | - | chr3_4:73282180-73282199 | Msa0520750:intron | 30.0% |
| !! | ATACTTCAATGCATTTTGGT+GGG | - | chr3_4:73282181-73282200 | Msa0520750:intron | 30.0% |
| AATATAACAGTGACAATGTC+GGG | - | chr3_4:73282234-73282253 | Msa0520750:intron | 30.0% | |
| TTGAATTGGGAATAAGATCT+AGG | - | chr3_4:73282324-73282343 | Msa0520750:intron | 30.0% | |
| TCATCATCTTCACTAGTAAA+GGG | + | chr3_4:73282462-73282481 | None:intergenic | 30.0% | |
| !!! | TCTTTGATTTGCCTTTTTTG+TGG | - | chr3_4:73282576-73282595 | Msa0520750:intron | 30.0% |
| !!! | CTTTGATTTGCCTTTTTTGT+GGG | - | chr3_4:73282577-73282596 | Msa0520750:intron | 30.0% |
| ATGCATACATGAATGAGTAA+AGG | + | chr3_4:73282618-73282637 | None:intergenic | 30.0% | |
| AGATGCATTAGTTAGTCATA+AGG | - | chr3_4:73282697-73282716 | Msa0520750:intron | 30.0% | |
| GAAATGATATACAAGGGAAA+AGG | + | chr3_4:73282999-73283018 | None:intergenic | 30.0% | |
| TAGTTTGACTGTAATTTGGT+GGG | - | chr3_4:73283065-73283084 | Msa0520750:intron | 30.0% | |
| ! | TTTTGCTTGCATAAGGTTTA+AGG | - | chr3_4:73283143-73283162 | Msa0520750:intron | 30.0% |
| GATGTGTTGTGATGTTAATT+AGG | - | chr3_4:73283183-73283202 | Msa0520750:intron | 30.0% | |
| TCCATTCTTGTACAAGAAAT+GGG | + | chr3_4:73283240-73283259 | None:intergenic | 30.0% | |
| TTCCATTCTTGTACAAGAAA+TGG | + | chr3_4:73283241-73283260 | None:intergenic | 30.0% | |
| AGCATCATAATATTGAGACT+TGG | + | chr3_4:73283326-73283345 | None:intergenic | 30.0% | |
| ! | TACAACAAGCATTTAAGACA+TGG | - | chr3_4:73283547-73283566 | Msa0520750:intron | 30.0% |
| ! | ACAACAAGCATTTAAGACAT+GGG | - | chr3_4:73283548-73283567 | Msa0520750:intron | 30.0% |
| ATATGTGTGTGATCCATTAT+AGG | - | chr3_4:73283840-73283859 | Msa0520750:intron | 30.0% | |
| ! | TCCATTATAGGAAGTATGTT+AGG | - | chr3_4:73283852-73283871 | Msa0520750:intron | 30.0% |
| ACCTAACATACTTCCTATAA+TGG | + | chr3_4:73283856-73283875 | None:intergenic | 30.0% | |
| ! | ATTATAGGAAGTATGTTAGG+TGG | - | chr3_4:73283855-73283874 | Msa0520750:intron | 30.0% |
| AAGGATGAGACATTATCAAT+CGG | - | chr3_4:73283901-73283920 | Msa0520750:intron | 30.0% | |
| ACAAAAGTTACAGTTACCTG+CGG | + | chr3_4:73279846-73279865 | None:intergenic | 35.0% | |
| ! | GGTAACTGTAACTTTTGTTG+AGG | - | chr3_4:73279848-73279867 | Msa0520750:three_prime_UTR | 35.0% |
| TGGAGTCCTTATTAGTGTAT+TGG | - | chr3_4:73280165-73280184 | Msa0520750:intron | 35.0% | |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr3_4:73280487-73280506 | Msa0520750:CDS | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr3_4:73280491-73280510 | Msa0520750:CDS | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr3_4:73280591-73280610 | Msa0520750:CDS | 35.0% |
| GCCGTTATATGCTATTAACT+TGG | + | chr3_4:73280741-73280760 | None:intergenic | 35.0% | |
| ATTTCATCATCTAAGTGTGG+TGG | + | chr3_4:73280941-73280960 | None:intergenic | 35.0% | |
| GTGATTTCATCATCTAAGTG+TGG | + | chr3_4:73280944-73280963 | None:intergenic | 35.0% | |
| ACAGAGAGAAAAAGATGATG+AGG | - | chr3_4:73281010-73281029 | Msa0520750:intron | 35.0% | |
| CAGAGAGAAAAAGATGATGA+GGG | - | chr3_4:73281011-73281030 | Msa0520750:intron | 35.0% | |
| AGAGAGAAAAAGATGATGAG+GGG | - | chr3_4:73281012-73281031 | Msa0520750:intron | 35.0% | |
| ACTTCCAGTTTCTTCATTGA+GGG | + | chr3_4:73281071-73281090 | None:intergenic | 35.0% | |
| TACTTCCAGTTTCTTCATTG+AGG | + | chr3_4:73281072-73281091 | None:intergenic | 35.0% | |
| ! | GTAGAATTTGTTCAAACTCG+TGG | - | chr3_4:73281363-73281382 | Msa0520750:CDS | 35.0% |
| ! | AGCTTTTCATTCGAGGAAAT+AGG | - | chr3_4:73281606-73281625 | Msa0520750:intron | 35.0% |
| AGCAAATTGAACCTGAGATT+TGG | + | chr3_4:73281752-73281771 | None:intergenic | 35.0% | |
| ! | TTTCTCTTTTCTCTTTCTCC+TGG | - | chr3_4:73281898-73281917 | Msa0520750:intron | 35.0% |
| TATTGAAATTGGGTTTCTGC+AGG | - | chr3_4:73282083-73282102 | Msa0520750:intron | 35.0% | |
| GTGGGTTCTTTATGTAGAAT+TGG | - | chr3_4:73282199-73282218 | Msa0520750:intron | 35.0% | |
| ATATAACAGTGACAATGTCG+GGG | - | chr3_4:73282235-73282254 | Msa0520750:intron | 35.0% | |
| GTGCAGGATTTGATTGATAA+AGG | - | chr3_4:73282375-73282394 | Msa0520750:intron | 35.0% | |
| TAGAAATTTAGTGCAGCGTA+TGG | - | chr3_4:73282419-73282438 | Msa0520750:intron | 35.0% | |
| CATCATCTTCACTAGTAAAG+GGG | + | chr3_4:73282461-73282480 | None:intergenic | 35.0% | |
| GTCATCATCTTCACTAGTAA+AGG | + | chr3_4:73282463-73282482 | None:intergenic | 35.0% | |
| TAGTTAGTCATAAGGTCTGT+AGG | - | chr3_4:73282705-73282724 | Msa0520750:intron | 35.0% | |
| TCAATTCCTTCAATGAAGAG+AGG | - | chr3_4:73282740-73282759 | Msa0520750:intron | 35.0% | |
| AAATCACTATAGTGCTGTAG+TGG | - | chr3_4:73282837-73282856 | Msa0520750:intron | 35.0% | |
| ! | TGTACCAGTGTTGTTAATCA+CGG | + | chr3_4:73282905-73282924 | None:intergenic | 35.0% |
| TGATATACAAGGGAAAAGGA+TGG | + | chr3_4:73282995-73283014 | None:intergenic | 35.0% | |
| GTAGTTTGACTGTAATTTGG+TGG | - | chr3_4:73283064-73283083 | Msa0520750:intron | 35.0% | |
| ! | ATAGAGCTTTTGCTTGCATA+AGG | - | chr3_4:73283136-73283155 | Msa0520750:intron | 35.0% |
| CCATTCTTGTACAAGAAATG+GGG | + | chr3_4:73283239-73283258 | None:intergenic | 35.0% | |
| TTCCTCAAAGAGAAACTCTT+AGG | - | chr3_4:73283281-73283300 | Msa0520750:intron | 35.0% | |
| ! | TCATTTTCAACACAGGATAC+TGG | - | chr3_4:73283353-73283372 | Msa0520750:intron | 35.0% |
| AGTAGAAACTACTTTCAGCA+AGG | - | chr3_4:73283486-73283505 | Msa0520750:intron | 35.0% | |
| ! | ATTTAAGACATGGGCTAAGT+GGG | - | chr3_4:73283557-73283576 | Msa0520750:intron | 35.0% |
| !! | GGTGTAACAAACTTTTGAGA+AGG | - | chr3_4:73283882-73283901 | Msa0520750:intron | 35.0% |
| AGGATGAGACATTATCAATC+GGG | - | chr3_4:73283902-73283921 | Msa0520750:intron | 35.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr3_4:73280595-73280614 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr3_4:73280490-73280509 | Msa0520750:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+TGG | - | chr3_4:73280595-73280614 | Msa0520750:CDS | 40.0% |
| CAACACCGCTAAAAACGTAA+AGG | - | chr3_4:73280688-73280707 | Msa0520750:intron | 40.0% | |
| TAAAGTGACCGGAATATCCA+TGG | - | chr3_4:73280790-73280809 | Msa0520750:intron | 40.0% | |
| AAATGAACACCGCAAGAAGA+CGG | - | chr3_4:73280877-73280896 | Msa0520750:intron | 40.0% | |
| ! | TTTGATTTCCCGTCTTCTTG+CGG | + | chr3_4:73280889-73280908 | None:intergenic | 40.0% |
| GAGAGAAAAAGATGATGAGG+GGG | - | chr3_4:73281013-73281032 | Msa0520750:intron | 40.0% | |
| CTTCCAGTTTCTTCATTGAG+GGG | + | chr3_4:73281070-73281089 | None:intergenic | 40.0% | |
| CTGGAAGTAAAAACTAGGAC+CGG | - | chr3_4:73281083-73281102 | Msa0520750:intron | 40.0% | |
| ! | AACTCGTGGTCTTTTAAGCT+CGG | - | chr3_4:73281377-73281396 | Msa0520750:CDS | 40.0% |
| ! | GTCTTTTAAGCTCGGATTTG+TGG | - | chr3_4:73281385-73281404 | Msa0520750:CDS | 40.0% |
| CTACTGTTATGCCAAATCTC+AGG | - | chr3_4:73281738-73281757 | Msa0520750:intron | 40.0% | |
| ! | GGTTCAATTTGCTCCTAAAC+AGG | - | chr3_4:73281759-73281778 | Msa0520750:intron | 40.0% |
| ! | AGCTTGTTTGAAGCCTGTTT+AGG | + | chr3_4:73281775-73281794 | None:intergenic | 40.0% |
| AATATGAGCATCACAACACC+AGG | + | chr3_4:73281919-73281938 | None:intergenic | 40.0% | |
| GCAAACCCTATGAATCTGAA+GGG | - | chr3_4:73282105-73282124 | Msa0520750:intron | 40.0% | |
| CAAACCCTATGAATCTGAAG+GGG | - | chr3_4:73282106-73282125 | Msa0520750:intron | 40.0% | |
| ! | GTTTGCTTGTTGAATTGTGC+AGG | - | chr3_4:73282359-73282378 | Msa0520750:intron | 40.0% |
| CGCATTCACTAACTTCAAAC+AGG | - | chr3_4:73282482-73282501 | Msa0520750:intron | 40.0% | |
| !!! | TGATTTGCCTTTTTTGTGGG+TGG | - | chr3_4:73282580-73282599 | Msa0520750:intron | 40.0% |
| TGAAATGCCACCCACAAAAA+AGG | + | chr3_4:73282590-73282609 | None:intergenic | 40.0% | |
| AGGACATCACTAAGACATCA+TGG | + | chr3_4:73282959-73282978 | None:intergenic | 40.0% | |
| GTCTTAGTGATGTCCTTGTA+TGG | - | chr3_4:73282963-73282982 | Msa0520750:intron | 40.0% | |
| ACAGGTTTGTGTTAGGATGT+TGG | - | chr3_4:73283088-73283107 | Msa0520750:intron | 40.0% | |
| GGATGTTGGATGTGTTTGTT+TGG | - | chr3_4:73283102-73283121 | Msa0520750:intron | 40.0% | |
| TGGGGATTTCACAATGTCTA+TGG | + | chr3_4:73283221-73283240 | None:intergenic | 40.0% | |
| CCCCATTTCTTGTACAAGAA+TGG | - | chr3_4:73283236-73283255 | Msa0520750:intron | 40.0% | |
| AGCCTAAGAGTTTCTCTTTG+AGG | + | chr3_4:73283286-73283305 | None:intergenic | 40.0% | |
| ! | TTTTCAACACAGGATACTGG+TGG | - | chr3_4:73283356-73283375 | Msa0520750:intron | 40.0% |
| ! | CATTTAAGACATGGGCTAAG+TGG | - | chr3_4:73283556-73283575 | Msa0520750:intron | 40.0% |
| TCTATGGCTGAAATTTGCAG+AGG | - | chr3_4:73283711-73283730 | Msa0520750:intron | 40.0% | |
| CTATGGCTGAAATTTGCAGA+GGG | - | chr3_4:73283712-73283731 | Msa0520750:intron | 40.0% | |
| TATGGCTGAAATTTGCAGAG+GGG | - | chr3_4:73283713-73283732 | Msa0520750:intron | 40.0% | |
| ! | AACTCTGGAGGTAAATGTGA+TGG | - | chr3_4:73283744-73283763 | Msa0520750:intron | 40.0% |
| ! | ACTCTGGAGGTAAATGTGAT+GGG | - | chr3_4:73283745-73283764 | Msa0520750:intron | 40.0% |
| TGCAGCATATCCATTGACAA+TGG | - | chr3_4:73283800-73283819 | Msa0520750:intron | 40.0% | |
| GCAGCATATCCATTGACAAT+GGG | - | chr3_4:73283801-73283820 | Msa0520750:intron | 40.0% | |
| TCGACAATTCCCATTGTCAA+TGG | + | chr3_4:73283813-73283832 | None:intergenic | 40.0% | |
| GGATGAGACATTATCAATCG+GGG | - | chr3_4:73283903-73283922 | Msa0520750:intron | 40.0% | |
| ! | ATGCGGGTATCGTTATACTG+TGG | - | chr3_4:73279786-73279805 | Msa0520750:three_prime_UTR | 45.0% |
| TATACTGTGGTCCTTTCCTG+CGG | - | chr3_4:73279799-73279818 | Msa0520750:three_prime_UTR | 45.0% | |
| ! | GTTACCTGCGGATTTTCTTG+CGG | + | chr3_4:73279834-73279853 | None:intergenic | 45.0% |
| !!! | TGTGTTGGTCACTTTTCCTG+CGG | - | chr3_4:73279886-73279905 | Msa0520750:three_prime_UTR | 45.0% |
| ! | TTTTCCTGCGGAATTTCCTG+CGG | - | chr3_4:73279898-73279917 | Msa0520750:three_prime_UTR | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr3_4:73280594-73280613 | None:intergenic | 45.0% |
| AATGAACACCGCAAGAAGAC+GGG | - | chr3_4:73280878-73280897 | Msa0520750:intron | 45.0% | |
| ! | TTGTTGTTCGTCGTCTTGTG+CGG | + | chr3_4:73280917-73280936 | None:intergenic | 45.0% |
| ! | CTTCATTGAGGGGTGGTTTT+GGG | + | chr3_4:73281060-73281079 | None:intergenic | 45.0% |
| ! | TCTTCATTGAGGGGTGGTTT+TGG | + | chr3_4:73281061-73281080 | None:intergenic | 45.0% |
| !! | AAAAACTAGGACCGGCTTGT+TGG | - | chr3_4:73281091-73281110 | Msa0520750:intron | 45.0% |
| GTGGTCTCTTACTCTCTGAT+TGG | - | chr3_4:73281404-73281423 | Msa0520750:CDS | 45.0% | |
| ! | GATGACGAGCTTTTCATTCG+AGG | - | chr3_4:73281599-73281618 | Msa0520750:intron | 45.0% |
| GGCAAACCCTATGAATCTGA+AGG | - | chr3_4:73282104-73282123 | Msa0520750:intron | 45.0% | |
| ACTGCCCCTTCAGATTCATA+GGG | + | chr3_4:73282113-73282132 | None:intergenic | 45.0% | |
| GACAATGTCGGGGACTAATT+TGG | - | chr3_4:73282245-73282264 | Msa0520750:intron | 45.0% | |
| AATGTCGGGGACTAATTTGG+TGG | - | chr3_4:73282248-73282267 | Msa0520750:intron | 45.0% | |
| CAGCGTATGGAATCATCTGT+GGG | - | chr3_4:73282432-73282451 | Msa0520750:intron | 45.0% | |
| !! | TAAGGTCTGTAGGAGTGCTT+AGG | - | chr3_4:73282715-73282734 | Msa0520750:intron | 45.0% |
| !! | AAGGTCTGTAGGAGTGCTTA+GGG | - | chr3_4:73282716-73282735 | Msa0520750:intron | 45.0% |
| CACTCTCCTCTCTTCATTGA+AGG | + | chr3_4:73282749-73282768 | None:intergenic | 45.0% | |
| CTTCAATGAAGAGAGGAGAG+TGG | - | chr3_4:73282747-73282766 | Msa0520750:intron | 45.0% | |
| ! | CCAGTGTTGTTAATCACGGA+TGG | + | chr3_4:73282901-73282920 | None:intergenic | 45.0% |
| CCATCCGTGATTAACAACAC+TGG | - | chr3_4:73282898-73282917 | Msa0520750:intron | 45.0% | |
| AGGATGGAAGACACCATACA+AGG | + | chr3_4:73282979-73282998 | None:intergenic | 45.0% | |
| ! | TGACTGTAATTTGGTGGGAC+AGG | - | chr3_4:73283070-73283089 | Msa0520750:intron | 45.0% |
| TGATAGCAAGCACACGTACA+AGG | - | chr3_4:73283593-73283612 | Msa0520750:intron | 45.0% | |
| GATAGCAAGCACACGTACAA+GGG | - | chr3_4:73283594-73283613 | Msa0520750:intron | 45.0% | |
| !! | CGTACAAGGGTCTTTTTCAC+TGG | - | chr3_4:73283607-73283626 | Msa0520750:intron | 45.0% |
| ATGGCTGAAATTTGCAGAGG+GGG | - | chr3_4:73283714-73283733 | Msa0520750:intron | 45.0% | |
| ! | CTCTGGAGGTAAATGTGATG+GGG | - | chr3_4:73283746-73283765 | Msa0520750:intron | 45.0% |
| ! | GGAAGTATGTTAGGTGGTGT+TGG | - | chr3_4:73283861-73283880 | Msa0520750:intron | 45.0% |
| !! | AATGTTAATATAAAATTAAT+GGG | - | chr3_4:73280121-73280140 | Msa0520750:intron | 5.0% |
| AAATCCGCAGGAAATTCCGC+AGG | + | chr3_4:73279905-73279924 | None:intergenic | 50.0% | |
| ACCGGAATATCCATGGTCTC+CGG | - | chr3_4:73280797-73280816 | Msa0520750:intron | 50.0% | |
| TCCGGAGACCATGGATATTC+CGG | + | chr3_4:73280801-73280820 | None:intergenic | 50.0% | |
| GATGATGAGGGGGTGATTTC+AGG | - | chr3_4:73281023-73281042 | Msa0520750:intron | 50.0% | |
| CCAGTTTCTTCATTGAGGGG+TGG | + | chr3_4:73281067-73281086 | None:intergenic | 50.0% | |
| CCACCCCTCAATGAAGAAAC+TGG | - | chr3_4:73281064-73281083 | Msa0520750:intron | 50.0% | |
| GAAGCTTTGCGTTGCTGGAA+GGG | + | chr3_4:73281287-73281306 | None:intergenic | 50.0% | |
| TGAAGCTTTGCGTTGCTGGA+AGG | + | chr3_4:73281288-73281307 | None:intergenic | 50.0% | |
| AGCTTGAAGCTTTGCGTTGC+TGG | + | chr3_4:73281292-73281311 | None:intergenic | 50.0% | |
| CACTGCCCCTTCAGATTCAT+AGG | + | chr3_4:73282114-73282133 | None:intergenic | 50.0% | |
| TGAGCTTCTTGCTGCTAAGC+AGG | - | chr3_4:73282137-73282156 | Msa0520750:intron | 50.0% | |
| GCAGCGTATGGAATCATCTG+TGG | - | chr3_4:73282431-73282450 | Msa0520750:intron | 50.0% | |
| AGAGGAGAGTGGAGTTCAGA+TGG | - | chr3_4:73282758-73282777 | Msa0520750:intron | 50.0% | |
| !! | ATATCGGCTCTGCAGTGTTG+TGG | - | chr3_4:73282805-73282824 | Msa0520750:intron | 50.0% |
| TGGTGGGACAGGTTTGTGTT+AGG | - | chr3_4:73283081-73283100 | Msa0520750:intron | 50.0% | |
| !! | CGTGTGCTTGCTATCAACTG+TGG | + | chr3_4:73283589-73283608 | None:intergenic | 50.0% |
| TGGCTGAAATTTGCAGAGGG+GGG | - | chr3_4:73283715-73283734 | Msa0520750:intron | 50.0% | |
| ! | CCTGCGGATTTTCTTGCGGT+GGG | + | chr3_4:73279830-73279849 | None:intergenic | 55.0% |
| ! | ACCTGCGGATTTTCTTGCGG+TGG | + | chr3_4:73279831-73279850 | None:intergenic | 55.0% |
| !! | TAGGACCGGCTTGTTGGAGA+GGG | - | chr3_4:73281097-73281116 | Msa0520750:intron | 55.0% |
| GTTGCTGGAAGGGAGATGAG+CGG | + | chr3_4:73281277-73281296 | None:intergenic | 55.0% | |
| GCTTCTTGCTGCTAAGCAGG+TGG | - | chr3_4:73282140-73282159 | Msa0520750:intron | 55.0% | |
| TGAAATTTGCAGAGGGGGGC+AGG | - | chr3_4:73283719-73283738 | Msa0520750:intron | 55.0% | |
| GAAATTTGCAGAGGGGGGCA+GGG | - | chr3_4:73283720-73283739 | Msa0520750:intron | 55.0% | |
| AAATTTGCAGAGGGGGGCAG+GGG | - | chr3_4:73283721-73283740 | Msa0520750:intron | 55.0% | |
| GGTGGGAGAATCCGCAGGAA+AGG | + | chr3_4:73279813-73279832 | None:intergenic | 60.0% | |
| CCCACCGCAAGAAAATCCGC+AGG | - | chr3_4:73279827-73279846 | Msa0520750:three_prime_UTR | 60.0% | |
| CGTTGCAGATCCGGAGACCA+TGG | + | chr3_4:73280810-73280829 | None:intergenic | 60.0% | |
| GGGCGTCAACGTTGCAGATC+CGG | + | chr3_4:73280819-73280838 | None:intergenic | 60.0% | |
| !! | CTAGGACCGGCTTGTTGGAG+AGG | - | chr3_4:73281096-73281115 | Msa0520750:intron | 60.0% |
| !! | ACCGGCTTGTTGGAGAGGGA+GGG | - | chr3_4:73281101-73281120 | Msa0520750:intron | 60.0% |
| GTGGTCGAACGCTGGTGGAA+CGG | + | chr3_4:73281255-73281274 | None:intergenic | 60.0% | |
| CTTGCGGTGGGAGAATCCGC+AGG | + | chr3_4:73279818-73279837 | None:intergenic | 65.0% | |
| !! | GACCGGCTTGTTGGAGAGGG+AGG | - | chr3_4:73281100-73281119 | Msa0520750:intron | 65.0% |
| CCCCTCCCTCTCCAACAAGC+CGG | + | chr3_4:73281105-73281124 | None:intergenic | 65.0% | |
| !! | CCGGCTTGTTGGAGAGGGAG+GGG | - | chr3_4:73281102-73281121 | Msa0520750:intron | 65.0% |
| GTCGAACGCTGGTGGAACGG+CGG | + | chr3_4:73281252-73281271 | None:intergenic | 65.0% | |
| GATGAGCGGTGGTCGAACGC+TGG | + | chr3_4:73281263-73281282 | None:intergenic | 65.0% | |
| GCTGGAAGGGAGATGAGCGG+TGG | + | chr3_4:73281274-73281293 | None:intergenic | 65.0% | |
| CTGGTGGAACGGCGGTGGAG+CGG | + | chr3_4:73281244-73281263 | None:intergenic | 70.0% | |
| GAACGCTGGTGGAACGGCGG+TGG | + | chr3_4:73281249-73281268 | None:intergenic | 70.0% | |
| GAGCGGTGGTCGAACGCTGG+TGG | + | chr3_4:73281260-73281279 | None:intergenic | 70.0% | |
| AGAGGGGGGCAGGGGAACTC+TGG | - | chr3_4:73283729-73283748 | Msa0520750:intron | 70.0% | |
| GGGGGGCAGGGGAACTCTGG+AGG | - | chr3_4:73283732-73283751 | Msa0520750:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 73279786 | 73284071 | 73279786 | ID=Msa0520750;Name=Msa0520750 |
| chr3_4 | mRNA | 73279786 | 73284071 | 73279786 | ID=Msa0520750-mRNA-1;Parent=Msa0520750;Name=Msa0520750-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.4|0.5|0.83|1|1|6|220|226 |
| chr3_4 | exon | 73279786 | 73280126 | 73279786 | ID=Msa0520750-mRNA-1:exon:20526;Parent=Msa0520750-mRNA-1 |
| chr3_4 | exon | 73280250 | 73280369 | 73280250 | ID=Msa0520750-mRNA-1:exon:20525;Parent=Msa0520750-mRNA-1 |
| chr3_4 | exon | 73280456 | 73280652 | 73280456 | ID=Msa0520750-mRNA-1:exon:20524;Parent=Msa0520750-mRNA-1 |
| chr3_4 | exon | 73281354 | 73281476 | 73281354 | ID=Msa0520750-mRNA-1:exon:20523;Parent=Msa0520750-mRNA-1 |
| chr3_4 | exon | 73281696 | 73281752 | 73281696 | ID=Msa0520750-mRNA-1:exon:20522;Parent=Msa0520750-mRNA-1 |
| chr3_4 | exon | 73284009 | 73284071 | 73284009 | ID=Msa0520750-mRNA-1:exon:20521;Parent=Msa0520750-mRNA-1 |
| chr3_4 | CDS | 73284009 | 73284071 | 73284009 | ID=Msa0520750-mRNA-1:cds;Parent=Msa0520750-mRNA-1 |
| chr3_4 | CDS | 73281696 | 73281752 | 73281696 | ID=Msa0520750-mRNA-1:cds;Parent=Msa0520750-mRNA-1 |
| chr3_4 | CDS | 73281354 | 73281476 | 73281354 | ID=Msa0520750-mRNA-1:cds;Parent=Msa0520750-mRNA-1 |
| chr3_4 | CDS | 73280456 | 73280652 | 73280456 | ID=Msa0520750-mRNA-1:cds;Parent=Msa0520750-mRNA-1 |
| chr3_4 | CDS | 73280250 | 73280369 | 73280250 | ID=Msa0520750-mRNA-1:cds;Parent=Msa0520750-mRNA-1 |
| chr3_4 | CDS | 73280006 | 73280126 | 73280006 | ID=Msa0520750-mRNA-1:cds;Parent=Msa0520750-mRNA-1 |
| chr3_4 | three_prime_UTR | 73279786 | 73280005 | 73279786 | ID=Msa0520750-mRNA-1:three_prime_utr;Parent=Msa0520750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
