Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0994100 | Msa0994110 | 0.961670 | 5.684866e-120 | -8.615850e-47 |
| Msa0994100 | Msa1117980 | 0.814731 | 1.326649e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATGAAGAATTTCAAGATT+TGG | 0.249094 | 6_4:+68276755 | Msa0994100:three_prime_UTR |
| AAATCGATTCTCAACCAAAA+AGG | 0.286025 | 6_4:-68276046 | None:intergenic |
| AAGAGCAGCGAGCAGAGATT+TGG | 0.316481 | 6_4:-68273844 | None:intergenic |
| AGTGAGAAGATTGAGATTCT+TGG | 0.320691 | 6_4:+68274620 | Msa0994100:CDS |
| CAATAACGCAGTGACCTTCA+TGG | 0.355750 | 6_4:+68276098 | Msa0994100:three_prime_UTR |
| TTCGTTGAAACTGGTAACTT+TGG | 0.360886 | 6_4:-68276345 | None:intergenic |
| AGAGCAGCGAGCAGAGATTT+GGG | 0.372884 | 6_4:-68273843 | None:intergenic |
| TCGTTGAAACTGGTAACTTT+GGG | 0.394041 | 6_4:-68276344 | None:intergenic |
| GATTGAGATTCTTGGCTGAT+TGG | 0.399566 | 6_4:+68274628 | Msa0994100:CDS |
| GGCTGATTGGATGGCGTTGA+TGG | 0.428563 | 6_4:+68274641 | Msa0994100:CDS |
| GTGCTCTTTGCTGCTTCGTT+CGG | 0.447280 | 6_4:-68273031 | None:intergenic |
| CAATGAGTTGAAACCACTCT+TGG | 0.467612 | 6_4:-68274688 | None:intergenic |
| CTTTCTTCTTTGCACGAAAG+TGG | 0.481612 | 6_4:+68273864 | Msa0994100:CDS |
| CGGTGAGGAGGAAACGGAAA+AGG | 0.509475 | 6_4:+68273059 | Msa0994100:CDS |
| CGGTGACGGTGAGGAGGAAA+CGG | 0.526321 | 6_4:+68273053 | Msa0994100:CDS |
| GAGATTCTTGGCTGATTGGA+TGG | 0.529251 | 6_4:+68274632 | Msa0994100:CDS |
| CCTTGTCTATGTATTCACTC+TGG | 0.551566 | 6_4:-68276159 | None:intergenic |
| TGGTAAAATAGTAGATTTCG+AGG | 0.551935 | 6_4:+68274661 | Msa0994100:exon |
| GTGGTTTCAACTCATTGAGA+AGG | 0.577214 | 6_4:+68274694 | Msa0994100:three_prime_UTR |
| AGCAGCAAAGAGCACGGTGA+CGG | 0.583344 | 6_4:+68273039 | Msa0994100:CDS |
| TCTTCTTTGCACGAAAGTGG+CGG | 0.585052 | 6_4:+68273867 | Msa0994100:CDS |
| AGAGCACGGTGACGGTGAGG+AGG | 0.601358 | 6_4:+68273047 | Msa0994100:CDS |
| CAAAGAGCACGGTGACGGTG+AGG | 0.626211 | 6_4:+68273044 | Msa0994100:CDS |
| AAACATTGTCGATGGTGGTG+AGG | 0.627439 | 6_4:+68273084 | Msa0994100:CDS |
| GAACGAAGCAGCAAAGAGCA+CGG | 0.631873 | 6_4:+68273033 | Msa0994100:CDS |
| ATTTCGAGGACAGCCAAGAG+TGG | 0.642957 | 6_4:+68274675 | Msa0994100:three_prime_UTR |
| CCAGAGTGAATACATAGACA+AGG | 0.653254 | 6_4:+68276159 | Msa0994100:three_prime_UTR |
| GGTGGTGAGGAACAAAACAA+AGG | 0.712249 | 6_4:+68273097 | Msa0994100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAATTTCATACAAAT+TGG | - | chr6_4:68274446-68274465 | None:intergenic | 10.0% |
| !!! | TATGAAAATGAATTATTTTT+GGG | + | chr6_4:68275574-68275593 | Msa0994100:intron | 10.0% |
| !!! | TCATTTATAAAATGATTTTG+TGG | + | chr6_4:68273225-68273244 | Msa0994100:intron | 15.0% |
| !! | AAAAGTGATAAAATAGATTA+GGG | - | chr6_4:68273781-68273800 | None:intergenic | 15.0% |
| !! | GAAACAATAACAAAAATAAA+AGG | - | chr6_4:68274037-68274056 | None:intergenic | 15.0% |
| !! | TAAAATTCTATATTGAACAA+AGG | - | chr6_4:68274212-68274231 | None:intergenic | 15.0% |
| !! | TCATATATGTATCAAAATAA+AGG | - | chr6_4:68275478-68275497 | None:intergenic | 15.0% |
| !!! | GTATGAAAATGAATTATTTT+TGG | + | chr6_4:68275573-68275592 | Msa0994100:intron | 15.0% |
| !!! | ATGAAAATGAATTATTTTTG+GGG | + | chr6_4:68275575-68275594 | Msa0994100:intron | 15.0% |
| !!! | TAATGAATAAGTTTGTTTTT+TGG | + | chr6_4:68275983-68276002 | Msa0994100:intron | 15.0% |
| !!! | TTTTATACATAATTCAACAT+AGG | - | chr6_4:68276418-68276437 | None:intergenic | 15.0% |
| !!! | TTAGCATATATATTTTCAAT+TGG | + | chr6_4:68276650-68276669 | Msa0994100:intron | 15.0% |
| !!! | TTGATGTTTAAGTTTTTTTA+GGG | + | chr6_4:68276802-68276821 | Msa0994100:three_prime_UTR | 15.0% |
| !! | TAATTTATTATTTACACACG+TGG | + | chr6_4:68273264-68273283 | Msa0994100:intron | 20.0% |
| !!! | ATTTTGGAAGTATAATAGAA+CGG | - | chr6_4:68273461-68273480 | None:intergenic | 20.0% |
| !!! | CCTAATTTTTTTTTTATTCG+AGG | - | chr6_4:68273522-68273541 | None:intergenic | 20.0% |
| !! | CCTCGAATAAAAAAAAAATT+AGG | + | chr6_4:68273519-68273538 | Msa0994100:intron | 20.0% |
| !! | TGAAATTGAGGATAAATTTA+GGG | - | chr6_4:68273697-68273716 | None:intergenic | 20.0% |
| !! | ATAAATCTGTATGTTTATGT+TGG | + | chr6_4:68273720-68273739 | Msa0994100:intron | 20.0% |
| !! | CAAAAGTGATAAAATAGATT+AGG | - | chr6_4:68273782-68273801 | None:intergenic | 20.0% |
| !! | TGTTATTGTTTCATCAAATT+AGG | + | chr6_4:68274045-68274064 | Msa0994100:intron | 20.0% |
| !!! | AAATTAGGTTTTCCTTTTTT+TGG | + | chr6_4:68274060-68274079 | Msa0994100:intron | 20.0% |
| !!! | ATTTTCTTTGTATTTACATC+TGG | + | chr6_4:68274264-68274283 | Msa0994100:intron | 20.0% |
| !!! | TCTTTCTAATTTCTGTTTTT+CGG | + | chr6_4:68274531-68274550 | Msa0994100:intron | 20.0% |
| !!! | TTCTTTTACTTAGAAGATAA+GGG | - | chr6_4:68274895-68274914 | None:intergenic | 20.0% |
| !!! | ATTCTTTTACTTAGAAGATA+AGG | - | chr6_4:68274896-68274915 | None:intergenic | 20.0% |
| !! | TCTAAGTAAAAGAATTAGTT+TGG | + | chr6_4:68274901-68274920 | Msa0994100:intron | 20.0% |
| !! | TATAATAGACAATGACAAAT+AGG | - | chr6_4:68274957-68274976 | None:intergenic | 20.0% |
| !! | ATGATTGATATCATTTCTTA+GGG | + | chr6_4:68275427-68275446 | Msa0994100:intron | 20.0% |
| !! | TAAAAAAAAAAACTCACGTT+GGG | - | chr6_4:68275752-68275771 | None:intergenic | 20.0% |
| !! | ATAAAAAAAAAAACTCACGT+TGG | - | chr6_4:68275753-68275772 | None:intergenic | 20.0% |
| !!! | ATTTTGAACATAGAAAAGAA+AGG | - | chr6_4:68275827-68275846 | None:intergenic | 20.0% |
| !!! | TTTCTATGTTCAAAATTTTG+AGG | + | chr6_4:68275831-68275850 | Msa0994100:intron | 20.0% |
| !! | TAATCTAAATTTCTGCAATT+TGG | + | chr6_4:68276286-68276305 | Msa0994100:intron | 20.0% |
| !! | AATCTAAATTTCTGCAATTT+GGG | + | chr6_4:68276287-68276306 | Msa0994100:intron | 20.0% |
| !! | TCTTGATAAGTTAAATTGAA+AGG | + | chr6_4:68276523-68276542 | Msa0994100:intron | 20.0% |
| !! | CTTGATAAGTTAAATTGAAA+GGG | + | chr6_4:68276524-68276543 | Msa0994100:intron | 20.0% |
| !!! | GTTGATGTTTAAGTTTTTTT+AGG | + | chr6_4:68276801-68276820 | Msa0994100:three_prime_UTR | 20.0% |
| !!! | TGATGTTTTTGATACATATA+TGG | + | chr6_4:68276951-68276970 | Msa0994100:three_prime_UTR | 20.0% |
| !!! | TTGCAAGTTTTTGAAAGTTA+AGG | + | chr6_4:68273368-68273387 | Msa0994100:intron | 25.0% |
| !!! | TGCAAGTTTTTGAAAGTTAA+GGG | + | chr6_4:68273369-68273388 | Msa0994100:intron | 25.0% |
| ! | CTGAAATTGAGGATAAATTT+AGG | - | chr6_4:68273698-68273717 | None:intergenic | 25.0% |
| ! | ATAAAATAGATTAGGGAAAG+GGG | - | chr6_4:68273774-68273793 | None:intergenic | 25.0% |
| ! | GATAAAATAGATTAGGGAAA+GGG | - | chr6_4:68273775-68273794 | None:intergenic | 25.0% |
| ! | TGATAAAATAGATTAGGGAA+AGG | - | chr6_4:68273776-68273795 | None:intergenic | 25.0% |
| !! | GTTTAGAATCATCATTATTC+TGG | + | chr6_4:68273959-68273978 | Msa0994100:intron | 25.0% |
| !! | ATGACTCAGATTTTTATGAA+TGG | + | chr6_4:68274139-68274158 | Msa0994100:intron | 25.0% |
| !!! | TGTTTTAATTTACACTGTGT+TGG | + | chr6_4:68274241-68274260 | Msa0994100:intron | 25.0% |
| ! | TTTGTATTTACATCTGGTAT+TGG | + | chr6_4:68274270-68274289 | Msa0994100:intron | 25.0% |
| !!! | ATGCAAATTGTTTTTCTATC+TGG | + | chr6_4:68274297-68274316 | Msa0994100:intron | 25.0% |
| ! | ACATTTGCTTCATTTGAATT+TGG | + | chr6_4:68274403-68274422 | Msa0994100:intron | 25.0% |
| ! | TAGTTTATAATTCACCAGAT+TGG | - | chr6_4:68274493-68274512 | None:intergenic | 25.0% |
| !!! | CATTGAGAAGGTATTTAATA+TGG | + | chr6_4:68274706-68274725 | Msa0994100:intron | 25.0% |
| !!! | AATTTTTTTGAGCTGGTAAA+TGG | + | chr6_4:68274741-68274760 | Msa0994100:intron | 25.0% |
| !!! | ATTTTTTTGAGCTGGTAAAT+GGG | + | chr6_4:68274742-68274761 | Msa0994100:intron | 25.0% |
| ! | AAATCAAATTAATTTCCCCA+TGG | + | chr6_4:68274815-68274834 | Msa0994100:intron | 25.0% |
| ! | ACTAGACAATGATAAATTAG+TGG | - | chr6_4:68274841-68274860 | None:intergenic | 25.0% |
| ! | AGATAGAGGCTAAAATAAAT+TGG | - | chr6_4:68274934-68274953 | None:intergenic | 25.0% |
| ! | TACAAGAAGAATTAGCAATA+TGG | - | chr6_4:68275008-68275027 | None:intergenic | 25.0% |
| ! | ATGACTATATATGTAGATGT+AGG | - | chr6_4:68275110-68275129 | None:intergenic | 25.0% |
| ! | AATAGTGTTGTAATTGACAA+TGG | + | chr6_4:68275286-68275305 | Msa0994100:intron | 25.0% |
| ! | ATAGTGTTGTAATTGACAAT+GGG | + | chr6_4:68275287-68275306 | Msa0994100:intron | 25.0% |
| ! | GATGATTGATATCATTTCTT+AGG | + | chr6_4:68275426-68275445 | Msa0994100:intron | 25.0% |
| ! | ATGACATATTGATGAGAAAA+AGG | + | chr6_4:68275498-68275517 | Msa0994100:intron | 25.0% |
| ! | TGATGTAGTAGATATGAAAA+TGG | + | chr6_4:68275632-68275651 | Msa0994100:intron | 25.0% |
| ! | GATGTAGTAGATATGAAAAT+GGG | + | chr6_4:68275633-68275652 | Msa0994100:intron | 25.0% |
| ! | AGAAAGGAACCAATATATAT+GGG | - | chr6_4:68275811-68275830 | None:intergenic | 25.0% |
| ! | AAGAAAGGAACCAATATATA+TGG | - | chr6_4:68275812-68275831 | None:intergenic | 25.0% |
| !!! | TTTGAGGTTTTAATGTTCTT+TGG | + | chr6_4:68275847-68275866 | Msa0994100:intron | 25.0% |
| !!! | TTGAGGTTTTAATGTTCTTT+GGG | + | chr6_4:68275848-68275867 | Msa0994100:intron | 25.0% |
| !! | GAGAATCGATTTCAAAAAAT+TGG | + | chr6_4:68276057-68276076 | Msa0994100:three_prime_UTR | 25.0% |
| !! | ATCGATTTCAAAAAATTGGT+TGG | + | chr6_4:68276061-68276080 | Msa0994100:three_prime_UTR | 25.0% |
| ! | TCGATTTCAAAAAATTGGTT+GGG | + | chr6_4:68276062-68276081 | Msa0994100:three_prime_UTR | 25.0% |
| AAAAGGAAAAACATTGTCGA+TGG | + | chr6_4:68273076-68273095 | Msa0994100:CDS | 30.0% | |
| AAAAGGACTACTATTGCAAA+GGG | + | chr6_4:68273323-68273342 | Msa0994100:intron | 30.0% | |
| !! | GCAAGTTTTTGAAAGTTAAG+GGG | + | chr6_4:68273370-68273389 | Msa0994100:intron | 30.0% |
| !! | CAAGTTTTTGAAAGTTAAGG+GGG | + | chr6_4:68273371-68273390 | Msa0994100:intron | 30.0% |
| CTACTCAATTTCACAATTTC+AGG | + | chr6_4:68273663-68273682 | Msa0994100:intron | 30.0% | |
| !! | CAGATTTATCTCTGAAATTG+AGG | - | chr6_4:68273709-68273728 | None:intergenic | 30.0% |
| !!! | GTTTTCCTTTTTTTGGTAGA+TGG | + | chr6_4:68274067-68274086 | Msa0994100:intron | 30.0% |
| TGTATCCATCTACCAAAAAA+AGG | - | chr6_4:68274075-68274094 | None:intergenic | 30.0% | |
| GATTATGAATATGACCAATC+TGG | + | chr6_4:68274476-68274495 | Msa0994100:intron | 30.0% | |
| !! | TAATTTCTGTTTTTCGGCTA+AGG | + | chr6_4:68274537-68274556 | Msa0994100:intron | 30.0% |
| !!! | GAGTTGCTGTTATTTCTTTT+AGG | - | chr6_4:68274573-68274592 | None:intergenic | 30.0% |
| TGGTAAAATAGTAGATTTCG+AGG | + | chr6_4:68274661-68274680 | Msa0994100:exon | 30.0% | |
| !!! | GCTTTCTAATTTTTTTGAGC+TGG | + | chr6_4:68274734-68274753 | Msa0994100:intron | 30.0% |
| ! | GTTTTTGTTGCATCAAAGAA+TGG | + | chr6_4:68274776-68274795 | Msa0994100:intron | 30.0% |
| AATGATAAATTAGTGGCCAT+GGG | - | chr6_4:68274834-68274853 | None:intergenic | 30.0% | |
| CTTCTTGTAAAGAGAGTTAA+TGG | + | chr6_4:68275019-68275038 | Msa0994100:intron | 30.0% | |
| ! | ATTTTTCCCCATATAACTTG+TGG | + | chr6_4:68275330-68275349 | Msa0994100:intron | 30.0% |
| TTCAGTGAACAAAAAAGAGA+AGG | - | chr6_4:68275373-68275392 | None:intergenic | 30.0% | |
| TAATGATAAGCCAAAGTTAG+AGG | + | chr6_4:68275684-68275703 | Msa0994100:intron | 30.0% | |
| AATGATAAGCCAAAGTTAGA+GGG | + | chr6_4:68275685-68275704 | Msa0994100:intron | 30.0% | |
| AAAGGAACCAATATATATGG+GGG | - | chr6_4:68275809-68275828 | None:intergenic | 30.0% | |
| GAAAGGAACCAATATATATG+GGG | - | chr6_4:68275810-68275829 | None:intergenic | 30.0% | |
| ATTAAAAGAGCTTACGAACA+TGG | - | chr6_4:68275964-68275983 | None:intergenic | 30.0% | |
| ! | TAACAACTTTGTTGCCTTTT+TGG | + | chr6_4:68276032-68276051 | Msa0994100:three_prime_UTR | 30.0% |
| ! | AAATCGATTCTCAACCAAAA+AGG | - | chr6_4:68276049-68276068 | None:intergenic | 30.0% |
| TGAATGAAATTTCTGCTACA+AGG | + | chr6_4:68276250-68276269 | Msa0994100:intron | 30.0% | |
| ! | TCTTATAGCAGATTCTTTTG+AGG | + | chr6_4:68276317-68276336 | Msa0994100:intron | 30.0% |
| ACCAGTTTCAACGAAAAAAA+AGG | + | chr6_4:68276353-68276372 | Msa0994100:three_prime_UTR | 30.0% | |
| !!! | ACCTTTTTTTTCGTTGAAAC+TGG | - | chr6_4:68276357-68276376 | None:intergenic | 30.0% |
| ! | ATAAGAACTCATGATAGTGA+AGG | + | chr6_4:68276444-68276463 | Msa0994100:intron | 30.0% |
| TGCAAATAATAGTGTCTTCA+TGG | - | chr6_4:68276677-68276696 | None:intergenic | 30.0% | |
| CGATGAAGAATTTCAAGATT+TGG | + | chr6_4:68276755-68276774 | Msa0994100:three_prime_UTR | 30.0% | |
| AAAACAAAGGTGAGGAACAA+AGG | + | chr6_4:68273110-68273129 | Msa0994100:intron | 35.0% | |
| ! | CTTTGCAATAGTAGTCCTTT+TGG | - | chr6_4:68273324-68273343 | None:intergenic | 35.0% |
| CAAAAGGACTACTATTGCAA+AGG | + | chr6_4:68273322-68273341 | Msa0994100:intron | 35.0% | |
| AAAGGACTACTATTGCAAAG+GGG | + | chr6_4:68273324-68273343 | Msa0994100:intron | 35.0% | |
| AACACGGTCGGATAAATTTA+GGG | - | chr6_4:68273634-68273653 | None:intergenic | 35.0% | |
| TGAGTAGAGAATTGAGAACA+CGG | - | chr6_4:68273650-68273669 | None:intergenic | 35.0% | |
| GATGATTCTAAACTGAACAG+CGG | - | chr6_4:68273952-68273971 | None:intergenic | 35.0% | |
| TTACACGATTAATGCTCTTC+AGG | + | chr6_4:68273989-68274008 | Msa0994100:intron | 35.0% | |
| TTTCATACAAATTGGCAGCT+AGG | - | chr6_4:68274438-68274457 | None:intergenic | 35.0% | |
| AGTGAGAAGATTGAGATTCT+TGG | + | chr6_4:68274620-68274639 | Msa0994100:CDS | 35.0% | |
| AGAATGGTTTGATCTCTTTG+AGG | + | chr6_4:68274792-68274811 | Msa0994100:intron | 35.0% | |
| ATGATAAATTAGTGGCCATG+GGG | - | chr6_4:68274833-68274852 | None:intergenic | 35.0% | |
| CAATGATAAATTAGTGGCCA+TGG | - | chr6_4:68274835-68274854 | None:intergenic | 35.0% | |
| !! | TCTAGTCATTTTACTTGCCA+AGG | + | chr6_4:68274855-68274874 | Msa0994100:intron | 35.0% |
| CAATGACAAATAGGAGATAG+AGG | - | chr6_4:68274948-68274967 | None:intergenic | 35.0% | |
| CTGTATACAATTAGTGCAAG+TGG | + | chr6_4:68275229-68275248 | Msa0994100:intron | 35.0% | |
| AACCCAACCACAAGTTATAT+GGG | - | chr6_4:68275340-68275359 | None:intergenic | 35.0% | |
| TAACCCAACCACAAGTTATA+TGG | - | chr6_4:68275341-68275360 | None:intergenic | 35.0% | |
| TTGTATGCTTGTGACTATGT+TGG | + | chr6_4:68275540-68275559 | Msa0994100:intron | 35.0% | |
| AAGGAACCAATATATATGGG+GGG | - | chr6_4:68275808-68275827 | None:intergenic | 35.0% | |
| TTCAGCTTCTTGAGTGAATA+AGG | + | chr6_4:68275871-68275890 | Msa0994100:intron | 35.0% | |
| TCGTTGAAACTGGTAACTTT+GGG | - | chr6_4:68276347-68276366 | None:intergenic | 35.0% | |
| TTCGTTGAAACTGGTAACTT+TGG | - | chr6_4:68276348-68276367 | None:intergenic | 35.0% | |
| AACAACAGAGTATGCTAGTA+GGG | - | chr6_4:68276595-68276614 | None:intergenic | 35.0% | |
| AGGAAAAACATTGTCGATGG+TGG | + | chr6_4:68273079-68273098 | Msa0994100:CDS | 40.0% | |
| TGAGGAACAAAACAAAGGTG+AGG | + | chr6_4:68273102-68273121 | Msa0994100:intron | 40.0% | |
| CTGGGTCAAAATTGACCAAA+AGG | + | chr6_4:68273306-68273325 | Msa0994100:intron | 40.0% | |
| TGCAAAGGGGCTAAAACTTA+AGG | + | chr6_4:68273337-68273356 | Msa0994100:intron | 40.0% | |
| GCAAAGGGGCTAAAACTTAA+GGG | + | chr6_4:68273338-68273357 | Msa0994100:intron | 40.0% | |
| CAAAGGGGCTAAAACTTAAG+GGG | + | chr6_4:68273339-68273358 | Msa0994100:intron | 40.0% | |
| ! | GTCGGATAAATTTAGGGTTC+TGG | - | chr6_4:68273628-68273647 | None:intergenic | 40.0% |
| GAACACGGTCGGATAAATTT+AGG | - | chr6_4:68273635-68273654 | None:intergenic | 40.0% | |
| TAGAGAATTGAGAACACGGT+CGG | - | chr6_4:68273646-68273665 | None:intergenic | 40.0% | |
| CTTTCTTCTTTGCACGAAAG+TGG | + | chr6_4:68273864-68273883 | Msa0994100:CDS | 40.0% | |
| AATGCTCTTCAGGTGATTGT+TGG | + | chr6_4:68273999-68274018 | Msa0994100:intron | 40.0% | |
| ATGCTCTTCAGGTGATTGTT+GGG | + | chr6_4:68274000-68274019 | Msa0994100:intron | 40.0% | |
| GATTGAGATTCTTGGCTGAT+TGG | + | chr6_4:68274628-68274647 | Msa0994100:CDS | 40.0% | |
| ! | CAATGAGTTGAAACCACTCT+TGG | - | chr6_4:68274691-68274710 | None:intergenic | 40.0% |
| GTGGTTTCAACTCATTGAGA+AGG | + | chr6_4:68274694-68274713 | Msa0994100:three_prime_UTR | 40.0% | |
| AGATAAGGGAAAGTGATGAG+CGG | - | chr6_4:68274881-68274900 | None:intergenic | 40.0% | |
| ! | TTCCCCATATAACTTGTGGT+TGG | + | chr6_4:68275334-68275353 | Msa0994100:intron | 40.0% |
| ! | TCCCCATATAACTTGTGGTT+GGG | + | chr6_4:68275335-68275354 | Msa0994100:intron | 40.0% |
| ACCCAACCACAAGTTATATG+GGG | - | chr6_4:68275339-68275358 | None:intergenic | 40.0% | |
| !! | TGCTCTTTGTGGTTCTAGAT+TGG | - | chr6_4:68275714-68275733 | None:intergenic | 40.0% |
| !! | ATTGAGAGCATTGCTCTTTG+TGG | - | chr6_4:68275725-68275744 | None:intergenic | 40.0% |
| AGTCTGCACAAAAACCATGA+AGG | - | chr6_4:68276115-68276134 | None:intergenic | 40.0% | |
| CCTTGTCTATGTATTCACTC+TGG | - | chr6_4:68276162-68276181 | None:intergenic | 40.0% | |
| CCAGAGTGAATACATAGACA+AGG | + | chr6_4:68276159-68276178 | Msa0994100:three_prime_UTR | 40.0% | |
| GTGAACAATGTAGAAGAGTG+CGG | - | chr6_4:68276396-68276415 | None:intergenic | 40.0% | |
| CAACAACAGAGTATGCTAGT+AGG | - | chr6_4:68276596-68276615 | None:intergenic | 40.0% | |
| CTACTAGCATACTCTGTTGT+TGG | + | chr6_4:68276594-68276613 | Msa0994100:intron | 40.0% | |
| TAGCATACTCTGTTGTTGGA+AGG | + | chr6_4:68276598-68276617 | Msa0994100:intron | 40.0% | |
| AGCATACTCTGTTGTTGGAA+GGG | + | chr6_4:68276599-68276618 | Msa0994100:intron | 40.0% | |
| ! | AAACATTGTCGATGGTGGTG+AGG | + | chr6_4:68273084-68273103 | Msa0994100:CDS | 45.0% |
| GGTGGTGAGGAACAAAACAA+AGG | + | chr6_4:68273097-68273116 | Msa0994100:CDS | 45.0% | |
| AACAAAGGTCGATGACAGTG+AGG | + | chr6_4:68273125-68273144 | Msa0994100:intron | 45.0% | |
| TCTGACGAAGGAGGAAGATA+TGG | - | chr6_4:68273575-68273594 | None:intergenic | 45.0% | |
| TGAATCGAATCTGACGAAGG+AGG | - | chr6_4:68273584-68273603 | None:intergenic | 45.0% | |
| TCTTCTTTGCACGAAAGTGG+CGG | + | chr6_4:68273867-68273886 | Msa0994100:CDS | 45.0% | |
| !! | GTTTTTCGGCTAAGGTCTCA+TGG | + | chr6_4:68274545-68274564 | Msa0994100:intron | 45.0% |
| GAGATTCTTGGCTGATTGGA+TGG | + | chr6_4:68274632-68274651 | Msa0994100:CDS | 45.0% | |
| TGCTTGTGACTATGTTGGAC+AGG | + | chr6_4:68275545-68275564 | Msa0994100:intron | 45.0% | |
| GATTGGCAACCCTCTAACTT+TGG | - | chr6_4:68275697-68275716 | None:intergenic | 45.0% | |
| TTTGCGCCCCCCATATATAT+TGG | + | chr6_4:68275799-68275818 | Msa0994100:intron | 45.0% | |
| CAATAACGCAGTGACCTTCA+TGG | + | chr6_4:68276098-68276117 | Msa0994100:three_prime_UTR | 45.0% | |
| ! | AGAAGAGTGCGGAACAACAT+GGG | - | chr6_4:68276385-68276404 | None:intergenic | 45.0% |
| ! | TAGAAGAGTGCGGAACAACA+TGG | - | chr6_4:68276386-68276405 | None:intergenic | 45.0% |
| !!! | ATAAAAAATTTATAATTTGT+AGG | - | chr6_4:68273412-68273431 | None:intergenic | 5.0% |
| !!! | TATTTTATTCTTTTTTATTT+TGG | - | chr6_4:68273477-68273496 | None:intergenic | 5.0% |
| !! | AGAATAAAATATATAAAATT+AGG | + | chr6_4:68273486-68273505 | Msa0994100:intron | 5.0% |
| !!! | ATAATTAAAAATAAAGTATT+CGG | - | chr6_4:68276932-68276951 | None:intergenic | 5.0% |
| ! | GTGCTCTTTGCTGCTTCGTT+CGG | - | chr6_4:68273034-68273053 | None:intergenic | 50.0% |
| GAACGAAGCAGCAAAGAGCA+CGG | + | chr6_4:68273033-68273052 | Msa0994100:CDS | 50.0% | |
| GGGTGAATCGAATCTGACGA+AGG | - | chr6_4:68273587-68273606 | None:intergenic | 50.0% | |
| TCGATTCACCCTGCAAACCA+AGG | + | chr6_4:68273596-68273615 | Msa0994100:intron | 50.0% | |
| !! | GGACTCAACCTTGGTTTGCA+GGG | - | chr6_4:68273607-68273626 | None:intergenic | 50.0% |
| !! | TGGACTCAACCTTGGTTTGC+AGG | - | chr6_4:68273608-68273627 | None:intergenic | 50.0% |
| !! | TAGGGTTCTGGACTCAACCT+TGG | - | chr6_4:68273616-68273635 | None:intergenic | 50.0% |
| AGAGCAGCGAGCAGAGATTT+GGG | - | chr6_4:68273846-68273865 | None:intergenic | 50.0% | |
| AAGAGCAGCGAGCAGAGATT+TGG | - | chr6_4:68273847-68273866 | None:intergenic | 50.0% | |
| ATTTCGAGGACAGCCAAGAG+TGG | + | chr6_4:68274675-68274694 | Msa0994100:three_prime_UTR | 50.0% | |
| AACCATGTGTGTTCGCGCAT+AGG | + | chr6_4:68276567-68276586 | Msa0994100:intron | 50.0% | |
| ! | AGCAGCAAAGAGCACGGTGA+CGG | + | chr6_4:68273039-68273058 | Msa0994100:CDS | 55.0% |
| CGGTGAGGAGGAAACGGAAA+AGG | + | chr6_4:68273059-68273078 | Msa0994100:CDS | 55.0% | |
| AGGTCGATGACAGTGAGGAG+AGG | + | chr6_4:68273130-68273149 | Msa0994100:intron | 55.0% | |
| !! | ATGCCACGTAGGCGTTGACT+GGG | + | chr6_4:68273288-68273307 | Msa0994100:intron | 55.0% |
| ! | GGCTGATTGGATGGCGTTGA+TGG | + | chr6_4:68274641-68274660 | Msa0994100:CDS | 55.0% |
| ! | TGGGGGGCGCAAATGTTGAA+GGG | - | chr6_4:68275792-68275811 | None:intergenic | 55.0% |
| ! | ATGGGGGGCGCAAATGTTGA+AGG | - | chr6_4:68275793-68275812 | None:intergenic | 55.0% |
| CACCTATGCGCGAACACACA+TGG | - | chr6_4:68276572-68276591 | None:intergenic | 55.0% | |
| ! | CAAAGAGCACGGTGACGGTG+AGG | + | chr6_4:68273044-68273063 | Msa0994100:CDS | 60.0% |
| ! | CGGTGACGGTGAGGAGGAAA+CGG | + | chr6_4:68273053-68273072 | Msa0994100:CDS | 60.0% |
| ACACACGTGGCATGCCACGT+AGG | + | chr6_4:68273277-68273296 | Msa0994100:intron | 60.0% | |
| !! | CATGCCACGTAGGCGTTGAC+TGG | + | chr6_4:68273287-68273306 | Msa0994100:intron | 60.0% |
| TGACCCAGTCAACGCCTACG+TGG | - | chr6_4:68273294-68273313 | None:intergenic | 60.0% | |
| GGGAAAGTGATGAGCGGCCT+TGG | - | chr6_4:68274875-68274894 | None:intergenic | 60.0% | |
| ! | AGAGCACGGTGACGGTGAGG+AGG | + | chr6_4:68273047-68273066 | Msa0994100:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 68273025 | 68277004 | 68273025 | ID=Msa0994100;Name=Msa0994100 |
| chr6_4 | mRNA | 68273025 | 68277004 | 68273025 | ID=Msa0994100-mRNA-1;Parent=Msa0994100;Name=Msa0994100-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.8|0.66|0.83|0.4|0.33|6|531|91 |
| chr6_4 | exon | 68273025 | 68273118 | 68273025 | ID=Msa0994100-mRNA-1:exon:12590;Parent=Msa0994100-mRNA-1 |
| chr6_4 | exon | 68273820 | 68273888 | 68273820 | ID=Msa0994100-mRNA-1:exon:12591;Parent=Msa0994100-mRNA-1 |
| chr6_4 | exon | 68274559 | 68274715 | 68274559 | ID=Msa0994100-mRNA-1:exon:12592;Parent=Msa0994100-mRNA-1 |
| chr6_4 | exon | 68276015 | 68276180 | 68276015 | ID=Msa0994100-mRNA-1:exon:12593;Parent=Msa0994100-mRNA-1 |
| chr6_4 | exon | 68276325 | 68276374 | 68276325 | ID=Msa0994100-mRNA-1:exon:12594;Parent=Msa0994100-mRNA-1 |
| chr6_4 | exon | 68276734 | 68277004 | 68276734 | ID=Msa0994100-mRNA-1:exon:12595;Parent=Msa0994100-mRNA-1 |
| chr6_4 | CDS | 68273025 | 68273118 | 68273025 | ID=Msa0994100-mRNA-1:cds;Parent=Msa0994100-mRNA-1 |
| chr6_4 | CDS | 68273820 | 68273888 | 68273820 | ID=Msa0994100-mRNA-1:cds;Parent=Msa0994100-mRNA-1 |
| chr6_4 | CDS | 68274559 | 68274671 | 68274559 | ID=Msa0994100-mRNA-1:cds;Parent=Msa0994100-mRNA-1 |
| chr6_4 | three_prime_UTR | 68274672 | 68274715 | 68274672 | ID=Msa0994100-mRNA-1:three_prime_utr;Parent=Msa0994100-mRNA-1 |
| chr6_4 | three_prime_UTR | 68276015 | 68276180 | 68276015 | ID=Msa0994100-mRNA-1:three_prime_utr;Parent=Msa0994100-mRNA-1 |
| chr6_4 | three_prime_UTR | 68276325 | 68276374 | 68276325 | ID=Msa0994100-mRNA-1:three_prime_utr;Parent=Msa0994100-mRNA-1 |
| chr6_4 | three_prime_UTR | 68276734 | 68277004 | 68276734 | ID=Msa0994100-mRNA-1:three_prime_utr;Parent=Msa0994100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
