Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994110 | KEH33157.1 | 80.000 | 45 | 3 | 1 | 1 | 45 | 1 | 39 | 3.40e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994110 | A0A072UU30 | 80.000 | 45 | 3 | 1 | 1 | 45 | 1 | 39 | 1.62e-12 | 67.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0994100 | Msa0994110 | 0.961670 | 5.684866e-120 | -8.615850e-47 |
| Msa0994110 | Msa1117980 | 0.811810 | 5.812043e-51 | -8.615850e-47 |
| Msa0994110 | Msa1350600 | 0.810935 | 9.001999e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATGAAGAATTTCAAGATT+TGG | 0.249094 | 6_4:+68378244 | Msa0994110:three_prime_UTR |
| AAATCGATTCTCAACCAAAA+AGG | 0.286025 | 6_4:-68377535 | None:intergenic |
| CAAAAGTGATAAAATAGATT+AGG | 0.315327 | 6_4:-68375263 | None:intergenic |
| AAGAGCAGCGAGCAGAGATT+TGG | 0.316481 | 6_4:-68375328 | None:intergenic |
| AGTGAGAAGATTGAGATTCT+TGG | 0.320691 | 6_4:+68376104 | Msa0994110:CDS |
| CAATAACGCAGTGACCTTCA+TGG | 0.355750 | 6_4:+68377587 | Msa0994110:three_prime_UTR |
| TTCGTTGAAACTGGTAACTT+TGG | 0.360886 | 6_4:-68377834 | None:intergenic |
| AGAGCAGCGAGCAGAGATTT+GGG | 0.372884 | 6_4:-68375327 | None:intergenic |
| AAAAGTGATAAAATAGATTA+GGG | 0.384886 | 6_4:-68375262 | None:intergenic |
| TCGTTGAAACTGGTAACTTT+GGG | 0.394041 | 6_4:-68377833 | None:intergenic |
| GATTGAGATTCTTGGCTGAT+TGG | 0.399566 | 6_4:+68376112 | Msa0994110:CDS |
| GATAAAATAGATTAGGGAAA+GGG | 0.420393 | 6_4:-68375256 | None:intergenic |
| GGCTGATTGGATGGCGTTGA+TGG | 0.428563 | 6_4:+68376125 | Msa0994110:CDS |
| GTGCTCTTTGCTGCTTCGTT+CGG | 0.447280 | 6_4:-68374514 | None:intergenic |
| CAATGAGTTGAAACCACTCT+TGG | 0.467612 | 6_4:-68376172 | None:intergenic |
| CTTTCTTCTTTGCACGAAAG+TGG | 0.481612 | 6_4:+68375348 | Msa0994110:CDS |
| ATAAAATAGATTAGGGAAAG+GGG | 0.508000 | 6_4:-68375255 | None:intergenic |
| CGGTGAGGAGGAAACGGAAA+AGG | 0.509475 | 6_4:+68374542 | Msa0994110:CDS |
| CGGTGACGGTGAGGAGGAAA+CGG | 0.526321 | 6_4:+68374536 | Msa0994110:CDS |
| GAGATTCTTGGCTGATTGGA+TGG | 0.529251 | 6_4:+68376116 | Msa0994110:CDS |
| CCTTGTCTATGTATTCACTC+TGG | 0.551566 | 6_4:-68377648 | None:intergenic |
| TGGTAAAATAGTAGATTTCG+AGG | 0.551935 | 6_4:+68376145 | Msa0994110:exon |
| TGATAAAATAGATTAGGGAA+AGG | 0.570380 | 6_4:-68375257 | None:intergenic |
| GTGGTTTCAACTCATTGAGA+AGG | 0.577214 | 6_4:+68376178 | Msa0994110:three_prime_UTR |
| AGCAGCAAAGAGCACGGTGA+CGG | 0.583344 | 6_4:+68374522 | Msa0994110:CDS |
| TCTTCTTTGCACGAAAGTGG+CGG | 0.585052 | 6_4:+68375351 | Msa0994110:CDS |
| AAAACAAAGGTGAGGAACAA+AGG | 0.600570 | 6_4:+68374593 | Msa0994110:CDS |
| AGAGCACGGTGACGGTGAGG+AGG | 0.601358 | 6_4:+68374530 | Msa0994110:CDS |
| CAAAGAGCACGGTGACGGTG+AGG | 0.626211 | 6_4:+68374527 | Msa0994110:CDS |
| AAACATTGTCGATGGTGGTG+AGG | 0.627439 | 6_4:+68374567 | Msa0994110:CDS |
| AGGTCGATGACAGTGAGGAG+AGG | 0.627793 | 6_4:+68374613 | Msa0994110:CDS |
| GAACGAAGCAGCAAAGAGCA+CGG | 0.631873 | 6_4:+68374516 | Msa0994110:CDS |
| ATTTCGAGGACAGCCAAGAG+TGG | 0.642957 | 6_4:+68376159 | Msa0994110:three_prime_UTR |
| CCAGAGTGAATACATAGACA+AGG | 0.653254 | 6_4:+68377648 | Msa0994110:three_prime_UTR |
| AACAAAGGTCGATGACAGTG+AGG | 0.681505 | 6_4:+68374608 | Msa0994110:CDS |
| GGTGGTGAGGAACAAAACAA+AGG | 0.712249 | 6_4:+68374580 | Msa0994110:CDS |
| TGAGGAACAAAACAAAGGTG+AGG | 0.713334 | 6_4:+68374585 | Msa0994110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAATTTCATACAAAT+TGG | - | chr6_4:68375930-68375949 | None:intergenic | 10.0% |
| !!! | TATGAAAATGAATTATTTTT+GGG | + | chr6_4:68377062-68377081 | Msa0994110:intron | 10.0% |
| !!! | TCATTTATAAAATGATTTTG+TGG | + | chr6_4:68374708-68374727 | Msa0994110:intron | 15.0% |
| !!! | CTAATTTTTTTTTTTATTCG+AGG | - | chr6_4:68375005-68375024 | None:intergenic | 15.0% |
| !! | CTCGAATAAAAAAAAAAATT+AGG | + | chr6_4:68375003-68375022 | Msa0994110:intron | 15.0% |
| !! | AAAAGTGATAAAATAGATTA+GGG | - | chr6_4:68375265-68375284 | None:intergenic | 15.0% |
| !! | GAAACAATAACAAAAATAAA+AGG | - | chr6_4:68375521-68375540 | None:intergenic | 15.0% |
| !! | TAAAATTCTATATTGAACAA+AGG | - | chr6_4:68375696-68375715 | None:intergenic | 15.0% |
| !! | TCATATATGTATCAAAATAA+AGG | - | chr6_4:68376966-68376985 | None:intergenic | 15.0% |
| !!! | GTATGAAAATGAATTATTTT+TGG | + | chr6_4:68377061-68377080 | Msa0994110:intron | 15.0% |
| !!! | ATGAAAATGAATTATTTTTG+GGG | + | chr6_4:68377063-68377082 | Msa0994110:intron | 15.0% |
| !!! | TAATGAATAAGTTTGTTTTT+TGG | + | chr6_4:68377472-68377491 | Msa0994110:intron | 15.0% |
| !!! | TTTTATACATAATTCAACAT+AGG | - | chr6_4:68377907-68377926 | None:intergenic | 15.0% |
| !!! | TTAGCATATATATTTTCAAT+TGG | + | chr6_4:68378139-68378158 | Msa0994110:intron | 15.0% |
| !!! | TTGATGTTTAAGTTTTTTTA+GGG | + | chr6_4:68378291-68378310 | Msa0994110:three_prime_UTR | 15.0% |
| !! | TAATTTATTATTTACACACG+TGG | + | chr6_4:68374747-68374766 | Msa0994110:intron | 20.0% |
| !!! | ATTTTGGAAGTATAATAGAA+CGG | - | chr6_4:68374944-68374963 | None:intergenic | 20.0% |
| !! | TGAAATTGAGGATAAATTTA+GGG | - | chr6_4:68375181-68375200 | None:intergenic | 20.0% |
| !! | ATAAATCTGTATGTTTATGT+TGG | + | chr6_4:68375204-68375223 | Msa0994110:intron | 20.0% |
| !! | CAAAAGTGATAAAATAGATT+AGG | - | chr6_4:68375266-68375285 | None:intergenic | 20.0% |
| !! | TGTTATTGTTTCATCAAATT+AGG | + | chr6_4:68375529-68375548 | Msa0994110:intron | 20.0% |
| !!! | AAATTAGGTTTTCCTTTTTT+TGG | + | chr6_4:68375544-68375563 | Msa0994110:intron | 20.0% |
| !!! | ATTTTCTTTGTATTTACATC+TGG | + | chr6_4:68375748-68375767 | Msa0994110:intron | 20.0% |
| !!! | TCTTTCTAATTTCTGTTTTT+CGG | + | chr6_4:68376015-68376034 | Msa0994110:intron | 20.0% |
| !!! | TTCTTTTACTTAGAAGATAA+GGG | - | chr6_4:68376379-68376398 | None:intergenic | 20.0% |
| !!! | ATTCTTTTACTTAGAAGATA+AGG | - | chr6_4:68376380-68376399 | None:intergenic | 20.0% |
| !! | TCTAAGTAAAAGAATTAGTT+TGG | + | chr6_4:68376385-68376404 | Msa0994110:intron | 20.0% |
| !! | TATAATAGACAATGACAAAT+AGG | - | chr6_4:68376441-68376460 | None:intergenic | 20.0% |
| !! | ATGATTGATATCATTTCTTA+GGG | + | chr6_4:68376915-68376934 | Msa0994110:intron | 20.0% |
| !! | ATAAAAAAAAAACTCACGTT+GGG | - | chr6_4:68377240-68377259 | None:intergenic | 20.0% |
| !!! | TTTCTATGTTCAAAATTTTG+AGG | + | chr6_4:68377319-68377338 | Msa0994110:intron | 20.0% |
| !! | TAATCTAAATTTCTGCAATT+TGG | + | chr6_4:68377775-68377794 | Msa0994110:intron | 20.0% |
| !! | AATCTAAATTTCTGCAATTT+GGG | + | chr6_4:68377776-68377795 | Msa0994110:intron | 20.0% |
| !! | TCTTGATAAGTTAAATTGAA+AGG | + | chr6_4:68378012-68378031 | Msa0994110:intron | 20.0% |
| !! | CTTGATAAGTTAAATTGAAA+GGG | + | chr6_4:68378013-68378032 | Msa0994110:intron | 20.0% |
| !!! | GTTGATGTTTAAGTTTTTTT+AGG | + | chr6_4:68378290-68378309 | Msa0994110:three_prime_UTR | 20.0% |
| !!! | TGATGTTTTTGATACATATA+TGG | + | chr6_4:68378440-68378459 | Msa0994110:three_prime_UTR | 20.0% |
| !! | CTTTCAAAAACTTGCAATTT+TGG | - | chr6_4:68374848-68374867 | None:intergenic | 25.0% |
| !!! | TTGCAAGTTTTTGAAAGTTA+AGG | + | chr6_4:68374851-68374870 | Msa0994110:intron | 25.0% |
| !!! | TGCAAGTTTTTGAAAGTTAA+GGG | + | chr6_4:68374852-68374871 | Msa0994110:intron | 25.0% |
| ! | CTGAAATTGAGGATAAATTT+AGG | - | chr6_4:68375182-68375201 | None:intergenic | 25.0% |
| ! | ATAAAATAGATTAGGGAAAG+GGG | - | chr6_4:68375258-68375277 | None:intergenic | 25.0% |
| ! | GATAAAATAGATTAGGGAAA+GGG | - | chr6_4:68375259-68375278 | None:intergenic | 25.0% |
| ! | TGATAAAATAGATTAGGGAA+AGG | - | chr6_4:68375260-68375279 | None:intergenic | 25.0% |
| !! | GTTTAGAATCATCATTATTC+TGG | + | chr6_4:68375443-68375462 | Msa0994110:intron | 25.0% |
| !! | ATGACTCAGATTTTTATGAA+TGG | + | chr6_4:68375623-68375642 | Msa0994110:intron | 25.0% |
| !!! | TGTTTTAATTTACACTGTGT+TGG | + | chr6_4:68375725-68375744 | Msa0994110:intron | 25.0% |
| ! | TTTGTATTTACATCTGGTAT+TGG | + | chr6_4:68375754-68375773 | Msa0994110:intron | 25.0% |
| !!! | ATGCAAATTGTTTTTCTATC+TGG | + | chr6_4:68375781-68375800 | Msa0994110:intron | 25.0% |
| ! | ACATTTGCTTCATTTGAATT+TGG | + | chr6_4:68375887-68375906 | Msa0994110:intron | 25.0% |
| ! | TAGTTTATAATTCACCAGAT+TGG | - | chr6_4:68375977-68375996 | None:intergenic | 25.0% |
| !!! | CATTGAGAAGGTATTTAATA+TGG | + | chr6_4:68376190-68376209 | Msa0994110:intron | 25.0% |
| !!! | AATTTTTTTGAGCTGGTAAA+TGG | + | chr6_4:68376225-68376244 | Msa0994110:intron | 25.0% |
| !!! | ATTTTTTTGAGCTGGTAAAT+GGG | + | chr6_4:68376226-68376245 | Msa0994110:intron | 25.0% |
| ! | AAATCAAATTAATTTCCCCA+TGG | + | chr6_4:68376299-68376318 | Msa0994110:intron | 25.0% |
| ! | ACTAGACAATGATAAATTAG+TGG | - | chr6_4:68376325-68376344 | None:intergenic | 25.0% |
| ! | AGATAGAGGCTAAAATAAAT+TGG | - | chr6_4:68376418-68376437 | None:intergenic | 25.0% |
| ! | TACAAGAAGAATTAGCAATA+TGG | - | chr6_4:68376492-68376511 | None:intergenic | 25.0% |
| ! | ATGACTATATATGTAGATGT+AGG | - | chr6_4:68376594-68376613 | None:intergenic | 25.0% |
| ! | AATAGTGTTGTAATTGACAA+TGG | + | chr6_4:68376770-68376789 | Msa0994110:intron | 25.0% |
| ! | ATAGTGTTGTAATTGACAAT+GGG | + | chr6_4:68376771-68376790 | Msa0994110:intron | 25.0% |
| ! | GATGATTGATATCATTTCTT+AGG | + | chr6_4:68376914-68376933 | Msa0994110:intron | 25.0% |
| ! | ATGACATATTGATGAGAAAA+AGG | + | chr6_4:68376986-68377005 | Msa0994110:intron | 25.0% |
| ! | TGATGTAGTAGATATGAAAA+TGG | + | chr6_4:68377120-68377139 | Msa0994110:intron | 25.0% |
| ! | GATGTAGTAGATATGAAAAT+GGG | + | chr6_4:68377121-68377140 | Msa0994110:intron | 25.0% |
| ! | GATAAAAAAAAAACTCACGT+TGG | - | chr6_4:68377241-68377260 | None:intergenic | 25.0% |
| !! | TTTTGAACATAGAAAAGAAG+AGG | - | chr6_4:68377314-68377333 | None:intergenic | 25.0% |
| !!! | TTTGAGGTTTTAATGTTCTT+TGG | + | chr6_4:68377335-68377354 | Msa0994110:intron | 25.0% |
| !!! | TTGAGGTTTTAATGTTCTTT+GGG | + | chr6_4:68377336-68377355 | Msa0994110:intron | 25.0% |
| !! | GAGAATCGATTTCAAAAAAT+TGG | + | chr6_4:68377546-68377565 | Msa0994110:three_prime_UTR | 25.0% |
| !! | ATCGATTTCAAAAAATTGGT+AGG | + | chr6_4:68377550-68377569 | Msa0994110:three_prime_UTR | 25.0% |
| ! | TCGATTTCAAAAAATTGGTA+GGG | + | chr6_4:68377551-68377570 | Msa0994110:three_prime_UTR | 25.0% |
| AAAAGGAAAAACATTGTCGA+TGG | + | chr6_4:68374559-68374578 | Msa0994110:CDS | 30.0% | |
| AAAAGGACTACTATTGCAAA+GGG | + | chr6_4:68374806-68374825 | Msa0994110:intron | 30.0% | |
| !! | GCAAGTTTTTGAAAGTTAAG+GGG | + | chr6_4:68374853-68374872 | Msa0994110:intron | 30.0% |
| !! | CAAGTTTTTGAAAGTTAAGG+GGG | + | chr6_4:68374854-68374873 | Msa0994110:intron | 30.0% |
| CTACTCAATTTCACAATTTC+AGG | + | chr6_4:68375147-68375166 | Msa0994110:intron | 30.0% | |
| !! | CAGATTTATCTCTGAAATTG+AGG | - | chr6_4:68375193-68375212 | None:intergenic | 30.0% |
| !!! | GTTTTCCTTTTTTTGGTAGA+TGG | + | chr6_4:68375551-68375570 | Msa0994110:intron | 30.0% |
| GATTATGAATATGACCAATC+TGG | + | chr6_4:68375960-68375979 | Msa0994110:intron | 30.0% | |
| !! | TAATTTCTGTTTTTCGGCTA+AGG | + | chr6_4:68376021-68376040 | Msa0994110:intron | 30.0% |
| !!! | GAGTTGCTGTTATTTCTTTT+AGG | - | chr6_4:68376057-68376076 | None:intergenic | 30.0% |
| TGGTAAAATAGTAGATTTCG+AGG | + | chr6_4:68376145-68376164 | Msa0994110:exon | 30.0% | |
| !!! | GCTTTCTAATTTTTTTGAGC+TGG | + | chr6_4:68376218-68376237 | Msa0994110:intron | 30.0% |
| ! | GTTTTTGTTGCATCAAAGAA+TGG | + | chr6_4:68376260-68376279 | Msa0994110:intron | 30.0% |
| AATGATAAATTAGTGGCCAT+GGG | - | chr6_4:68376318-68376337 | None:intergenic | 30.0% | |
| CTTCTTGTAAAGAGAGTTAA+TGG | + | chr6_4:68376503-68376522 | Msa0994110:intron | 30.0% | |
| ! | ATTTTTCCCCATATAACTTG+TGG | + | chr6_4:68376814-68376833 | Msa0994110:intron | 30.0% |
| TAATGATAAGCCAAAGTTAG+AGG | + | chr6_4:68377172-68377191 | Msa0994110:intron | 30.0% | |
| AATGATAAGCCAAAGTTAGA+GGG | + | chr6_4:68377173-68377192 | Msa0994110:intron | 30.0% | |
| AAGAGGAACCAATATATATG+GGG | - | chr6_4:68377297-68377316 | None:intergenic | 30.0% | |
| GAAGAGGAACCAATATATAT+GGG | - | chr6_4:68377298-68377317 | None:intergenic | 30.0% | |
| AGAAGAGGAACCAATATATA+TGG | - | chr6_4:68377299-68377318 | None:intergenic | 30.0% | |
| ATTAAAAGAGCTTACGAACA+TGG | - | chr6_4:68377453-68377472 | None:intergenic | 30.0% | |
| ! | TAACAACTTTGTTGCCTTTT+TGG | + | chr6_4:68377521-68377540 | Msa0994110:three_prime_UTR | 30.0% |
| ! | AAATCGATTCTCAACCAAAA+AGG | - | chr6_4:68377538-68377557 | None:intergenic | 30.0% |
| TGAATGAAATTTCTGCTACA+AGG | + | chr6_4:68377739-68377758 | Msa0994110:intron | 30.0% | |
| ! | TCTTATAGCAGATTCTTTTG+AGG | + | chr6_4:68377806-68377825 | Msa0994110:intron | 30.0% |
| ACCAGTTTCAACGAAAAAAA+AGG | + | chr6_4:68377842-68377861 | Msa0994110:three_prime_UTR | 30.0% | |
| !!! | ACCTTTTTTTTCGTTGAAAC+TGG | - | chr6_4:68377846-68377865 | None:intergenic | 30.0% |
| ! | ATAAGAACTCATGATAGTGA+AGG | + | chr6_4:68377933-68377952 | Msa0994110:intron | 30.0% |
| TGCAAATAATAGTGTCTTCA+TGG | - | chr6_4:68378166-68378185 | None:intergenic | 30.0% | |
| CGATGAAGAATTTCAAGATT+TGG | + | chr6_4:68378244-68378263 | Msa0994110:three_prime_UTR | 30.0% | |
| AAAACAAAGGTGAGGAACAA+AGG | + | chr6_4:68374593-68374612 | Msa0994110:CDS | 35.0% | |
| ! | CTTTGCAATAGTAGTCCTTT+TGG | - | chr6_4:68374807-68374826 | None:intergenic | 35.0% |
| CAAAAGGACTACTATTGCAA+AGG | + | chr6_4:68374805-68374824 | Msa0994110:intron | 35.0% | |
| AAAGGACTACTATTGCAAAG+GGG | + | chr6_4:68374807-68374826 | Msa0994110:intron | 35.0% | |
| ! | GGAAGTATAATAGAACGGTT+TGG | - | chr6_4:68374939-68374958 | None:intergenic | 35.0% |
| AACACGGTCGGATAAATTTA+GGG | - | chr6_4:68375118-68375137 | None:intergenic | 35.0% | |
| TGAGTAGAGAATTGAGAACA+CGG | - | chr6_4:68375134-68375153 | None:intergenic | 35.0% | |
| GATGATTCTAAACTGAACAG+CGG | - | chr6_4:68375436-68375455 | None:intergenic | 35.0% | |
| TTACACGATTAATGCTCTTC+AGG | + | chr6_4:68375473-68375492 | Msa0994110:intron | 35.0% | |
| CGTATCCATCTACCAAAAAA+AGG | - | chr6_4:68375559-68375578 | None:intergenic | 35.0% | |
| TTTCATACAAATTGGCAGCT+AGG | - | chr6_4:68375922-68375941 | None:intergenic | 35.0% | |
| AGTGAGAAGATTGAGATTCT+TGG | + | chr6_4:68376104-68376123 | Msa0994110:CDS | 35.0% | |
| AGAATGGTTTGATCTCTTTG+AGG | + | chr6_4:68376276-68376295 | Msa0994110:intron | 35.0% | |
| ATGATAAATTAGTGGCCATG+GGG | - | chr6_4:68376317-68376336 | None:intergenic | 35.0% | |
| CAATGATAAATTAGTGGCCA+TGG | - | chr6_4:68376319-68376338 | None:intergenic | 35.0% | |
| !! | TCTAGTCATTTTACTTGCCA+AGG | + | chr6_4:68376339-68376358 | Msa0994110:intron | 35.0% |
| CAATGACAAATAGGAGATAG+AGG | - | chr6_4:68376432-68376451 | None:intergenic | 35.0% | |
| CTGTATACAATTAGTGCAAG+TGG | + | chr6_4:68376713-68376732 | Msa0994110:intron | 35.0% | |
| AACCCAACCACAAGTTATAT+GGG | - | chr6_4:68376824-68376843 | None:intergenic | 35.0% | |
| TAACCCAACCACAAGTTATA+TGG | - | chr6_4:68376825-68376844 | None:intergenic | 35.0% | |
| TTCAGTGAACAACAAAGAGA+AGG | - | chr6_4:68376857-68376876 | None:intergenic | 35.0% | |
| TTGTATGCTTGTGACTATGT+TGG | + | chr6_4:68377028-68377047 | Msa0994110:intron | 35.0% | |
| AGAGGAACCAATATATATGG+GGG | - | chr6_4:68377296-68377315 | None:intergenic | 35.0% | |
| TTCAGCTTCTTGAGTGAATA+AGG | + | chr6_4:68377359-68377378 | Msa0994110:intron | 35.0% | |
| TCGTTGAAACTGGTAACTTT+GGG | - | chr6_4:68377836-68377855 | None:intergenic | 35.0% | |
| TTCGTTGAAACTGGTAACTT+TGG | - | chr6_4:68377837-68377856 | None:intergenic | 35.0% | |
| AACAACAGAGTATGCTAGTA+GGG | - | chr6_4:68378084-68378103 | None:intergenic | 35.0% | |
| AGGAAAAACATTGTCGATGG+TGG | + | chr6_4:68374562-68374581 | Msa0994110:CDS | 40.0% | |
| TGAGGAACAAAACAAAGGTG+AGG | + | chr6_4:68374585-68374604 | Msa0994110:CDS | 40.0% | |
| CTGGGTCAAAATTGACCAAA+AGG | + | chr6_4:68374789-68374808 | Msa0994110:intron | 40.0% | |
| TGCAAAGGGGCTAAAACTTA+AGG | + | chr6_4:68374820-68374839 | Msa0994110:intron | 40.0% | |
| GCAAAGGGGCTAAAACTTAA+GGG | + | chr6_4:68374821-68374840 | Msa0994110:intron | 40.0% | |
| CAAAGGGGCTAAAACTTAAG+GGG | + | chr6_4:68374822-68374841 | Msa0994110:intron | 40.0% | |
| ! | GTCGGATAAATTTAGGGTTC+TGG | - | chr6_4:68375112-68375131 | None:intergenic | 40.0% |
| GAACACGGTCGGATAAATTT+AGG | - | chr6_4:68375119-68375138 | None:intergenic | 40.0% | |
| TAGAGAATTGAGAACACGGT+CGG | - | chr6_4:68375130-68375149 | None:intergenic | 40.0% | |
| CTTTCTTCTTTGCACGAAAG+TGG | + | chr6_4:68375348-68375367 | Msa0994110:CDS | 40.0% | |
| AATGCTCTTCAGGTGATTGT+TGG | + | chr6_4:68375483-68375502 | Msa0994110:intron | 40.0% | |
| ATGCTCTTCAGGTGATTGTT+GGG | + | chr6_4:68375484-68375503 | Msa0994110:intron | 40.0% | |
| GATTGAGATTCTTGGCTGAT+TGG | + | chr6_4:68376112-68376131 | Msa0994110:CDS | 40.0% | |
| ! | CAATGAGTTGAAACCACTCT+TGG | - | chr6_4:68376175-68376194 | None:intergenic | 40.0% |
| GTGGTTTCAACTCATTGAGA+AGG | + | chr6_4:68376178-68376197 | Msa0994110:three_prime_UTR | 40.0% | |
| AGATAAGGGAAAGTGATGAG+CGG | - | chr6_4:68376365-68376384 | None:intergenic | 40.0% | |
| ! | TTCCCCATATAACTTGTGGT+TGG | + | chr6_4:68376818-68376837 | Msa0994110:intron | 40.0% |
| ! | TCCCCATATAACTTGTGGTT+GGG | + | chr6_4:68376819-68376838 | Msa0994110:intron | 40.0% |
| ACCCAACCACAAGTTATATG+GGG | - | chr6_4:68376823-68376842 | None:intergenic | 40.0% | |
| !! | TGCTCTTTGTGGTTCTAGAT+TGG | - | chr6_4:68377202-68377221 | None:intergenic | 40.0% |
| !! | ATTGAGAGCATTGCTCTTTG+TGG | - | chr6_4:68377213-68377232 | None:intergenic | 40.0% |
| GAGGAACCAATATATATGGG+GGG | - | chr6_4:68377295-68377314 | None:intergenic | 40.0% | |
| AGTCTGCACAAAAACCATGA+AGG | - | chr6_4:68377604-68377623 | None:intergenic | 40.0% | |
| CCTTGTCTATGTATTCACTC+TGG | - | chr6_4:68377651-68377670 | None:intergenic | 40.0% | |
| CCAGAGTGAATACATAGACA+AGG | + | chr6_4:68377648-68377667 | Msa0994110:three_prime_UTR | 40.0% | |
| GTGAACAATGTAGAAGAGTG+CGG | - | chr6_4:68377885-68377904 | None:intergenic | 40.0% | |
| CAACAACAGAGTATGCTAGT+AGG | - | chr6_4:68378085-68378104 | None:intergenic | 40.0% | |
| CTACTAGCATACTCTGTTGT+TGG | + | chr6_4:68378083-68378102 | Msa0994110:intron | 40.0% | |
| TAGCATACTCTGTTGTTGGA+AGG | + | chr6_4:68378087-68378106 | Msa0994110:intron | 40.0% | |
| AGCATACTCTGTTGTTGGAA+GGG | + | chr6_4:68378088-68378107 | Msa0994110:intron | 40.0% | |
| ! | AAACATTGTCGATGGTGGTG+AGG | + | chr6_4:68374567-68374586 | Msa0994110:CDS | 45.0% |
| GGTGGTGAGGAACAAAACAA+AGG | + | chr6_4:68374580-68374599 | Msa0994110:CDS | 45.0% | |
| AACAAAGGTCGATGACAGTG+AGG | + | chr6_4:68374608-68374627 | Msa0994110:CDS | 45.0% | |
| TCTGACGAAGGAGGAAGATA+TGG | - | chr6_4:68375059-68375078 | None:intergenic | 45.0% | |
| TGAATCGAATCTGACGAAGG+AGG | - | chr6_4:68375068-68375087 | None:intergenic | 45.0% | |
| TCTTCTTTGCACGAAAGTGG+CGG | + | chr6_4:68375351-68375370 | Msa0994110:CDS | 45.0% | |
| !! | GTTTTTCGGCTAAGGTCTCA+TGG | + | chr6_4:68376029-68376048 | Msa0994110:intron | 45.0% |
| GAGATTCTTGGCTGATTGGA+TGG | + | chr6_4:68376116-68376135 | Msa0994110:CDS | 45.0% | |
| TGCTTGTGACTATGTTGGAC+AGG | + | chr6_4:68377033-68377052 | Msa0994110:intron | 45.0% | |
| GATTGGCAACCCTCTAACTT+TGG | - | chr6_4:68377185-68377204 | None:intergenic | 45.0% | |
| TTTGCGCCCCCCATATATAT+TGG | + | chr6_4:68377286-68377305 | Msa0994110:intron | 45.0% | |
| CAATAACGCAGTGACCTTCA+TGG | + | chr6_4:68377587-68377606 | Msa0994110:three_prime_UTR | 45.0% | |
| ! | AGAAGAGTGCGGAACAACAT+GGG | - | chr6_4:68377874-68377893 | None:intergenic | 45.0% |
| ! | TAGAAGAGTGCGGAACAACA+TGG | - | chr6_4:68377875-68377894 | None:intergenic | 45.0% |
| !!! | ATAAAAAATTTATAATTTGT+AGG | - | chr6_4:68374895-68374914 | None:intergenic | 5.0% |
| !!! | TATTTTATTCTTTTTTATTT+TGG | - | chr6_4:68374960-68374979 | None:intergenic | 5.0% |
| !! | AGAATAAAATATATAAAATT+AGG | + | chr6_4:68374969-68374988 | Msa0994110:intron | 5.0% |
| !!! | ATAATTAAAAATAAAGTATT+CGG | - | chr6_4:68378421-68378440 | None:intergenic | 5.0% |
| ! | GTGCTCTTTGCTGCTTCGTT+CGG | - | chr6_4:68374517-68374536 | None:intergenic | 50.0% |
| GAACGAAGCAGCAAAGAGCA+CGG | + | chr6_4:68374516-68374535 | Msa0994110:CDS | 50.0% | |
| GGGTGAATCGAATCTGACGA+AGG | - | chr6_4:68375071-68375090 | None:intergenic | 50.0% | |
| TCGATTCACCCTGCAAACCA+AGG | + | chr6_4:68375080-68375099 | Msa0994110:intron | 50.0% | |
| !! | GGACTCAACCTTGGTTTGCA+GGG | - | chr6_4:68375091-68375110 | None:intergenic | 50.0% |
| !! | TGGACTCAACCTTGGTTTGC+AGG | - | chr6_4:68375092-68375111 | None:intergenic | 50.0% |
| !! | TAGGGTTCTGGACTCAACCT+TGG | - | chr6_4:68375100-68375119 | None:intergenic | 50.0% |
| AGAGCAGCGAGCAGAGATTT+GGG | - | chr6_4:68375330-68375349 | None:intergenic | 50.0% | |
| AAGAGCAGCGAGCAGAGATT+TGG | - | chr6_4:68375331-68375350 | None:intergenic | 50.0% | |
| ATTTCGAGGACAGCCAAGAG+TGG | + | chr6_4:68376159-68376178 | Msa0994110:three_prime_UTR | 50.0% | |
| AACCATGTGTGTTCGCGCAT+AGG | + | chr6_4:68378056-68378075 | Msa0994110:intron | 50.0% | |
| ! | AGCAGCAAAGAGCACGGTGA+CGG | + | chr6_4:68374522-68374541 | Msa0994110:CDS | 55.0% |
| CGGTGAGGAGGAAACGGAAA+AGG | + | chr6_4:68374542-68374561 | Msa0994110:CDS | 55.0% | |
| AGGTCGATGACAGTGAGGAG+AGG | + | chr6_4:68374613-68374632 | Msa0994110:CDS | 55.0% | |
| !! | ATGCCACGTAGGCGTTGACT+GGG | + | chr6_4:68374771-68374790 | Msa0994110:intron | 55.0% |
| ! | GGCTGATTGGATGGCGTTGA+TGG | + | chr6_4:68376125-68376144 | Msa0994110:CDS | 55.0% |
| ! | TGGGGGGCGCAAATGTTGAA+GGG | - | chr6_4:68377279-68377298 | None:intergenic | 55.0% |
| ! | ATGGGGGGCGCAAATGTTGA+AGG | - | chr6_4:68377280-68377299 | None:intergenic | 55.0% |
| CACCTATGCGCGAACACACA+TGG | - | chr6_4:68378061-68378080 | None:intergenic | 55.0% | |
| ! | CAAAGAGCACGGTGACGGTG+AGG | + | chr6_4:68374527-68374546 | Msa0994110:CDS | 60.0% |
| ! | CGGTGACGGTGAGGAGGAAA+CGG | + | chr6_4:68374536-68374555 | Msa0994110:CDS | 60.0% |
| ACACACGTGGCATGCCACGT+AGG | + | chr6_4:68374760-68374779 | Msa0994110:intron | 60.0% | |
| !! | CATGCCACGTAGGCGTTGAC+TGG | + | chr6_4:68374770-68374789 | Msa0994110:intron | 60.0% |
| TGACCCAGTCAACGCCTACG+TGG | - | chr6_4:68374777-68374796 | None:intergenic | 60.0% | |
| GGGAAAGTGATGAGCGGCCT+TGG | - | chr6_4:68376359-68376378 | None:intergenic | 60.0% | |
| ! | AGAGCACGGTGACGGTGAGG+AGG | + | chr6_4:68374530-68374549 | Msa0994110:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 68374508 | 68378493 | 68374508 | ID=Msa0994110;Name=Msa0994110 |
| chr6_4 | mRNA | 68374508 | 68378493 | 68374508 | ID=Msa0994110-mRNA-1;Parent=Msa0994110;Name=Msa0994110-mRNA-1;_AED=0.31;_eAED=0.33;_QI=0|0.8|0.66|1|0.2|0.16|6|531|124 |
| chr6_4 | exon | 68374508 | 68374640 | 68374508 | ID=Msa0994110-mRNA-1:exon:12600;Parent=Msa0994110-mRNA-1 |
| chr6_4 | exon | 68375244 | 68375372 | 68375244 | ID=Msa0994110-mRNA-1:exon:12601;Parent=Msa0994110-mRNA-1 |
| chr6_4 | exon | 68376043 | 68376199 | 68376043 | ID=Msa0994110-mRNA-1:exon:12602;Parent=Msa0994110-mRNA-1 |
| chr6_4 | exon | 68377504 | 68377669 | 68377504 | ID=Msa0994110-mRNA-1:exon:12603;Parent=Msa0994110-mRNA-1 |
| chr6_4 | exon | 68377814 | 68377863 | 68377814 | ID=Msa0994110-mRNA-1:exon:12604;Parent=Msa0994110-mRNA-1 |
| chr6_4 | exon | 68378223 | 68378493 | 68378223 | ID=Msa0994110-mRNA-1:exon:12605;Parent=Msa0994110-mRNA-1 |
| chr6_4 | CDS | 68374508 | 68374640 | 68374508 | ID=Msa0994110-mRNA-1:cds;Parent=Msa0994110-mRNA-1 |
| chr6_4 | CDS | 68375244 | 68375372 | 68375244 | ID=Msa0994110-mRNA-1:cds;Parent=Msa0994110-mRNA-1 |
| chr6_4 | CDS | 68376043 | 68376155 | 68376043 | ID=Msa0994110-mRNA-1:cds;Parent=Msa0994110-mRNA-1 |
| chr6_4 | three_prime_UTR | 68376156 | 68376199 | 68376156 | ID=Msa0994110-mRNA-1:three_prime_utr;Parent=Msa0994110-mRNA-1 |
| chr6_4 | three_prime_UTR | 68377504 | 68377669 | 68377504 | ID=Msa0994110-mRNA-1:three_prime_utr;Parent=Msa0994110-mRNA-1 |
| chr6_4 | three_prime_UTR | 68377814 | 68377863 | 68377814 | ID=Msa0994110-mRNA-1:three_prime_utr;Parent=Msa0994110-mRNA-1 |
| chr6_4 | three_prime_UTR | 68378223 | 68378493 | 68378223 | ID=Msa0994110-mRNA-1:three_prime_utr;Parent=Msa0994110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
