AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0994260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0994260 MtrunA17_Chr6g0479311 89.685 572 14 1 1 572 1 527 0.0 1026
Msa0994260 MtrunA17_Chr8g0340881 33.333 510 312 13 4 488 9 515 3.14e-72 248
Msa0994260 MtrunA17_Chr8g0340871 32.712 483 293 14 4 464 14 486 1.00e-67 235
Msa0994260 MtrunA17_Chr8g0340941 31.884 483 303 13 1 464 1 476 1.54e-66 225
Msa0994260 MtrunA17_Chr8g0340931 31.198 484 307 13 3 464 2 481 2.03e-66 231
Msa0994260 MtrunA17_Chr8g0341151 30.579 484 307 12 1 464 2 476 1.49e-65 229
Msa0994260 MtrunA17_Chr8g0341231 32.026 459 289 12 26 464 51 506 1.19e-64 221
Msa0994260 MtrunA17_Chr8g0341061 33.888 481 267 19 26 464 60 531 1.64e-64 224
Msa0994260 MtrunA17_Chr8g0340911 32.298 483 301 12 1 464 6 481 3.98e-64 225
Msa0994260 MtrunA17_Chr8g0341011 32.450 453 288 11 26 464 34 482 7.23e-64 224
Msa0994260 MtrunA17_Chr8g0347661 29.752 484 319 11 1 464 6 488 1.13e-63 224
Msa0994260 MtrunA17_Chr1g0205741 32.438 484 277 18 29 473 28 500 1.61e-60 209
Msa0994260 MtrunA17_Chr6g0487571 31.743 482 300 15 7 464 8 484 2.28e-60 215
Msa0994260 MtrunA17_Chr8g0341091 31.727 498 289 17 26 477 56 548 3.15e-60 211
Msa0994260 MtrunA17_Chr8g0340891 30.801 487 302 15 1 464 6 480 9.80e-59 210
Msa0994260 MtrunA17_Chr2g0330591 29.684 475 308 14 7 462 10 477 2.56e-57 206
Msa0994260 MtrunA17_Chr7g0263591 30.833 480 294 18 26 477 33 502 5.63e-57 206
Msa0994260 MtrunA17_Chr8g0341101 31.447 477 282 15 26 461 59 531 1.10e-55 202
Msa0994260 MtrunA17_Chr8g0341141 28.834 489 293 14 1 464 1 459 5.61e-53 188
Msa0994260 MtrunA17_Chr8g0358831 28.986 483 266 14 3 464 22 448 2.63e-52 191
Msa0994260 MtrunA17_Chr1g0181731 29.253 482 301 18 26 477 27 498 4.04e-51 189
Msa0994260 MtrunA17_Chr3g0123141 28.402 507 295 22 16 466 15 509 5.53e-46 174
Msa0994260 MtrunA17_Chr8g0341351 31.686 344 215 10 26 354 44 382 9.65e-41 152
Msa0994260 MtrunA17_Chr6g0487561 31.844 358 219 14 4 342 17 368 2.64e-40 150
Msa0994260 MtrunA17_Chr8g0341271 32.107 299 189 8 63 354 3 294 1.85e-35 135
Msa0994260 MtrunA17_Chr7g0236881 27.061 558 320 20 7 502 10 542 2.21e-35 142
Msa0994260 MtrunA17_Chr8g0340961 29.972 357 209 12 1 340 1 333 4.89e-30 120
Msa0994260 MtrunA17_Chr8g0341111 39.877 163 89 4 324 477 245 407 1.32e-28 121
Msa0994260 MtrunA17_Chr8g0341111 33.721 172 92 7 26 183 56 219 2.42e-17 85.9
Msa0994260 MtrunA17_Chr2g0282601 28.215 521 310 23 4 478 6 508 1.17e-27 117
Msa0994260 MtrunA17_Chr4g0044931 37.912 182 102 6 29 200 7 187 2.29e-27 109
Msa0994260 MtrunA17_Chr5g0411631 23.505 485 298 19 2 459 11 449 1.21e-24 108
Msa0994260 MtrunA17_Chr5g0423871 37.931 145 88 2 322 464 14 158 4.52e-23 97.4
Msa0994260 MtrunA17_Chr5g0423881 29.204 339 211 16 27 342 64 396 5.46e-23 101
Msa0994260 MtrunA17_Chr4g0044941 29.851 268 180 7 196 460 9 271 7.22e-22 95.9
Msa0994260 MtrunA17_Chr5g0422481 24.248 532 316 23 9 477 17 524 4.25e-18 88.2
Msa0994260 MtrunA17_Chr2g0330611 31.638 177 110 6 7 173 10 185 9.96e-18 82.8
Msa0994260 MtrunA17_Chr1g0198681 25.956 497 300 24 29 477 40 516 1.65e-17 86.3
Msa0994260 MtrunA17_Chr8g0341261 33.594 128 67 3 355 464 19 146 2.74e-17 79.7
Msa0994260 MtrunA17_Chr8g0341201 38.462 143 75 5 93 232 24 156 2.40e-16 77.0
Msa0994260 MtrunA17_Chr2g0330621 25.888 197 132 7 234 423 14 203 4.42e-16 77.4
Msa0994260 MtrunA17_Chr1g0165161 34.247 146 82 6 343 478 19 160 2.07e-14 72.4
Msa0994260 MtrunA17_Chr7g0220741 35.135 185 99 9 354 525 36 212 2.76e-13 72.8
Msa0994260 MtrunA17_Chr1g0165281 34.437 151 82 7 339 477 52 197 4.33e-13 72.4
Msa0994260 MtrunA17_Chr1g0165241 34.437 151 82 7 339 477 52 197 4.33e-13 72.4
Msa0994260 MtrunA17_Chr1g0165311 34.437 151 82 7 339 477 52 197 4.33e-13 72.4
Msa0994260 MtrunA17_Chr4g0073471 40.278 144 67 7 346 477 19 155 9.09e-13 71.2
Msa0994260 MtrunA17_Chr1g0165921 36.111 144 76 7 339 472 10 147 3.47e-12 69.3
Msa0994260 MtrunA17_Chr5g0413291 41.463 123 59 5 367 483 51 166 5.94e-12 68.6
Msa0994260 MtrunA17_Chr1g0165191 33.333 135 74 6 339 463 19 147 9.03e-12 68.2
Msa0994260 MtrunA17_Chr7g0222841 33.333 153 64 6 343 463 29 175 1.40e-11 64.3
Msa0994260 MtrunA17_Chr2g0334251 33.117 154 89 5 315 458 2 151 1.70e-11 67.0
Msa0994260 MtrunA17_Chr1g0165971 33.333 135 75 6 339 463 19 148 1.79e-11 67.4
Msa0994260 MtrunA17_Chr1g0165271 28.061 196 121 7 339 523 21 207 2.21e-11 65.9
Msa0994260 MtrunA17_Chr1g0165221 34.437 151 83 8 339 478 20 165 4.31e-11 66.2
Msa0994260 MtrunA17_Chr1g0165211 31.788 151 85 6 339 478 17 160 4.92e-11 65.9
Msa0994260 MtrunA17_Chr1g0165231 28.061 196 121 7 339 523 21 207 5.20e-11 65.9
Msa0994260 MtrunA17_Chr1g0165301 28.061 196 121 7 339 523 21 207 5.20e-11 65.9
Msa0994260 MtrunA17_Chr6g0456231 38.053 113 61 4 354 461 34 142 6.25e-11 65.1
Msa0994260 MtrunA17_Chr1g0165881 35.075 134 72 7 354 477 38 166 6.36e-11 62.8
Msa0994260 MtrunA17_Chr5g0396941 38.000 100 56 4 382 477 58 155 6.94e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0994260 AT5G59680.1 33.833 467 273 19 26 467 29 484 5.17e-67 234
Msa0994260 AT3G46280.1 36.827 353 199 9 9 344 5 350 1.05e-65 222
Msa0994260 AT4G29990.2 32.640 481 298 15 4 464 6 480 3.50e-65 226
Msa0994260 AT1G51800.1 32.083 480 301 17 4 465 8 480 1.47e-64 227
Msa0994260 AT4G29990.1 32.640 481 298 15 4 464 6 480 1.99e-64 226
Msa0994260 AT3G19230.1 33.966 474 272 13 29 465 25 494 3.16e-63 216
Msa0994260 AT5G59670.2 32.684 462 286 13 26 467 28 484 6.37e-62 219
Msa0994260 AT5G59670.1 32.684 462 286 13 26 467 28 484 6.37e-62 219
Msa0994260 AT3G46270.1 34.085 355 213 8 4 344 9 356 8.26e-61 209
Msa0994260 AT3G46270.2 34.085 355 213 8 4 344 17 364 9.53e-61 209
Msa0994260 AT2G19210.1 32.049 493 295 18 3 466 8 489 2.04e-60 215
Msa0994260 AT3G05990.1 31.656 477 278 15 29 464 30 499 2.57e-60 209
Msa0994260 AT1G24485.4 36.888 347 202 9 3 342 10 346 2.86e-60 206
Msa0994260 AT1G24485.1 36.888 347 202 9 3 342 10 346 3.98e-60 207
Msa0994260 AT1G24485.2 36.888 347 202 9 3 342 10 346 6.05e-60 207
Msa0994260 AT1G51790.3 30.977 481 305 15 5 464 9 483 1.88e-59 213
Msa0994260 AT1G51790.1 30.977 481 305 15 5 464 9 483 1.88e-59 213
Msa0994260 AT1G51790.2 30.977 481 305 15 5 464 9 483 2.15e-59 213
Msa0994260 AT2G29000.1 31.092 476 302 14 26 481 30 499 1.20e-58 210
Msa0994260 AT1G24485.3 36.888 347 202 9 3 342 10 346 1.99e-58 205
Msa0994260 AT1G07550.1 29.870 462 298 15 26 467 29 484 1.34e-57 207
Msa0994260 AT1G05700.1 30.705 482 296 16 6 464 14 480 1.59e-57 207
Msa0994260 AT1G05700.2 30.705 482 296 16 6 464 14 480 3.02e-57 206
Msa0994260 AT3G46400.1 30.920 511 315 16 1 482 1 502 4.92e-57 206
Msa0994260 AT3G21340.2 31.590 459 290 14 26 465 33 486 2.61e-56 201
Msa0994260 AT2G19190.1 30.785 484 308 14 1 461 3 482 5.34e-56 203
Msa0994260 AT5G59650.1 31.723 476 295 16 26 477 29 498 1.09e-55 202
Msa0994260 AT2G19230.2 30.103 485 307 15 4 464 9 485 1.22e-55 202
Msa0994260 AT3G46420.1 30.888 518 313 17 1 484 1 507 1.38e-55 201
Msa0994260 AT3G21340.1 31.590 459 290 14 26 465 33 486 2.74e-55 201
Msa0994260 AT2G19230.1 30.103 485 307 15 4 464 9 485 2.76e-55 202
Msa0994260 AT4G20450.2 31.864 499 295 20 5 463 7 500 4.04e-55 200
Msa0994260 AT5G16900.2 30.020 503 305 20 26 493 24 514 4.74e-55 197
Msa0994260 AT4G20450.1 31.864 499 295 20 5 463 7 500 5.30e-55 200
Msa0994260 AT2G37050.4 31.115 511 290 18 26 483 28 529 6.26e-55 198
Msa0994260 AT2G37050.2 31.115 511 290 18 26 483 28 529 6.69e-55 198
Msa0994260 AT3G46340.1 29.225 503 322 16 3 477 6 502 7.37e-55 199
Msa0994260 AT2G14440.1 28.807 486 319 14 2 465 4 484 9.76e-55 199
Msa0994260 AT1G51860.1 30.591 474 301 16 1 451 1 469 1.88e-54 198
Msa0994260 AT2G37050.1 31.115 511 290 18 26 483 28 529 7.03e-54 197
Msa0994260 AT3G46260.1 34.821 336 193 10 27 344 29 356 7.08e-54 189
Msa0994260 AT5G16900.1 30.020 503 305 20 26 493 24 514 7.11e-54 197
Msa0994260 AT5G16900.3 30.020 503 305 20 26 493 24 514 7.11e-54 197
Msa0994260 AT2G37050.3 31.115 511 290 18 26 483 28 529 7.63e-54 197
Msa0994260 AT2G28960.2 30.515 485 306 18 2 465 6 480 7.88e-54 197
Msa0994260 AT3G46330.1 30.087 462 297 13 26 467 31 486 1.40e-53 196
Msa0994260 AT1G51805.1 30.435 460 290 16 26 465 26 475 1.87e-53 196
Msa0994260 AT2G14510.2 28.657 499 306 17 1 465 9 491 4.68e-53 194
Msa0994260 AT2G14510.1 28.657 499 306 17 1 465 1 483 4.71e-53 194
Msa0994260 AT1G51850.2 29.913 458 294 13 26 465 26 474 1.45e-52 193
Msa0994260 AT1G51880.2 30.266 489 309 17 1 464 19 500 2.11e-52 192
Msa0994260 AT1G51880.1 30.266 489 309 17 1 464 1 482 2.85e-52 192
Msa0994260 AT5G59650.2 30.992 484 296 17 26 477 29 506 3.48e-52 192
Msa0994260 AT2G28990.2 30.435 460 297 14 26 467 25 479 3.63e-52 192
Msa0994260 AT2G28990.1 30.435 460 297 14 26 467 25 479 3.63e-52 192
Msa0994260 AT2G04300.2 30.417 503 314 16 4 477 9 504 7.80e-52 191
Msa0994260 AT1G49100.1 29.806 463 295 16 26 465 30 485 2.13e-50 187
Msa0994260 AT1G07560.1 29.310 464 293 14 26 464 30 483 7.39e-50 185
Msa0994260 AT1G51880.3 29.779 497 309 18 1 464 19 508 7.65e-50 185
Msa0994260 AT1G51870.2 28.489 523 336 18 1 497 1 511 9.87e-50 185
Msa0994260 AT1G67720.1 29.032 527 310 19 1 473 1 517 1.77e-49 184
Msa0994260 AT3G46370.2 29.577 426 272 12 79 482 2 421 2.49e-49 183
Msa0994260 AT3G46370.1 29.577 426 272 12 79 482 2 421 2.49e-49 183
Msa0994260 AT1G51890.3 29.918 488 308 17 4 467 3 480 3.52e-49 182
Msa0994260 AT1G51890.1 29.735 491 311 17 4 470 3 483 1.01e-48 182
Msa0994260 AT1G51890.2 29.735 491 311 17 4 470 3 483 1.14e-48 182
Msa0994260 AT3G46240.1 34.441 331 180 10 27 350 6 306 2.08e-48 174
Msa0994260 AT1G51820.1 29.854 479 306 17 8 465 5 474 8.35e-48 179
Msa0994260 AT1G51805.2 29.130 460 272 16 26 465 26 451 1.71e-47 178
Msa0994260 AT4G29180.3 30.522 498 315 15 7 476 7 501 4.03e-47 177
Msa0994260 AT4G29180.2 30.522 498 315 15 7 476 7 501 4.52e-47 177
Msa0994260 AT1G51850.1 28.603 458 280 13 26 465 26 454 7.89e-47 176
Msa0994260 AT3G46330.2 29.398 432 279 13 26 437 31 456 1.22e-44 170
Msa0994260 AT4G29450.1 28.180 511 336 13 1 484 1 507 3.20e-44 169
Msa0994260 AT1G51910.1 29.757 494 306 18 1 464 1 483 5.29e-44 168
Msa0994260 AT2G04300.1 28.797 507 276 16 4 477 9 463 1.39e-43 167
Msa0994260 AT4G29180.1 30.181 497 316 15 7 476 7 499 7.07e-43 165
Msa0994260 AT1G51870.1 27.740 447 291 16 1 422 1 440 2.30e-39 154
Msa0994260 AT5G59660.2 29.343 426 227 16 70 476 41 411 2.40e-36 145
Msa0994260 AT5G48740.1 30.461 499 290 24 4 477 1 467 6.80e-36 144
Msa0994260 AT2G28960.1 29.855 345 222 13 133 465 12 348 4.92e-34 138
Msa0994260 AT1G51860.2 30.395 329 213 11 134 451 2 325 9.63e-34 137
Msa0994260 AT2G28970.2 29.630 351 215 11 135 467 11 347 2.78e-32 132
Msa0994260 AT1G51810.1 27.528 356 241 11 121 466 2 350 2.02e-31 130
Msa0994260 AT5G16900.4 30.341 323 189 15 197 493 16 328 2.65e-31 129
Msa0994260 AT5G59660.3 25.447 503 266 17 1 476 16 436 1.99e-30 127
Msa0994260 AT1G28340.1 30.189 477 275 28 27 461 29 489 2.60e-30 126
Msa0994260 AT5G59660.1 25.686 510 269 18 1 484 16 441 5.43e-29 122
Msa0994260 AT2G28970.1 30.450 289 173 8 196 467 105 382 9.16e-28 119
Msa0994260 AT1G51890.4 29.538 325 205 11 158 467 101 416 1.49e-26 115
Msa0994260 AT1G51830.1 28.826 281 190 7 193 465 7 285 8.79e-26 112
Msa0994260 AT1G51830.2 28.826 281 190 7 193 465 14 292 1.13e-25 112
Msa0994260 AT3G46350.1 30.038 263 164 9 26 274 30 286 7.45e-25 108
Msa0994260 AT1G51820.2 36.842 152 89 5 321 465 61 212 1.17e-20 96.3
Msa0994260 AT1G51890.5 29.858 211 137 7 270 470 2 211 2.69e-18 89.0
Msa0994260 AT1G51840.2 31.319 182 113 4 1 174 8 185 6.80e-18 82.8
Msa0994260 AT1G51840.5 31.319 182 113 4 1 174 8 185 6.80e-18 82.8
Msa0994260 AT1G51840.4 31.319 182 113 4 1 174 8 185 6.80e-18 82.8
Msa0994260 AT1G51840.3 31.319 182 113 4 1 174 8 185 6.80e-18 82.8
Msa0994260 AT1G51840.1 31.319 182 113 4 1 174 8 185 6.80e-18 82.8
Msa0994260 AT5G59616.1 28.472 144 96 4 263 399 10 153 6.61e-17 78.6
Msa0994260 AT1G25570.1 24.494 494 286 21 29 477 32 483 5.05e-14 75.5
Msa0994260 AT5G63710.2 39.706 136 62 8 354 477 16 143 1.63e-13 73.9
Msa0994260 AT5G63710.4 39.706 136 62 8 354 477 16 143 1.63e-13 73.9
Msa0994260 AT5G63710.1 39.706 136 62 8 354 477 51 178 2.07e-13 73.6
Msa0994260 AT5G63710.3 39.706 136 62 8 354 477 52 179 2.51e-13 73.2
Msa0994260 AT3G08680.1 34.694 147 85 4 339 477 9 152 3.58e-13 72.8
Msa0994260 AT3G08680.2 34.694 147 85 4 339 477 9 152 3.58e-13 72.8
Msa0994260 AT5G65700.1 38.621 145 79 5 342 477 13 156 1.63e-12 71.2
Msa0994260 AT5G65700.2 38.621 145 79 5 342 477 13 156 1.63e-12 71.2
Msa0994260 AT1G60800.1 43.564 101 45 4 365 461 50 142 2.45e-12 70.1

Find 104 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGATGAACCAAATATAAT+TGG 0.221312 6_4:-68713914 Msa0994260:CDS
CCACCACCTCAACTTATTCT+AGG 0.237369 6_4:-68713881 Msa0994260:CDS
TTCAATTTGATGGTAACTAT+TGG 0.240710 6_4:-68717500 Msa0994260:CDS
GAAATAATGGAAAGTGCTTT+TGG 0.248118 6_4:-68716358 Msa0994260:CDS
GGTGGCGAACCAATTATATT+TGG 0.266666 6_4:+68713905 None:intergenic
TGCTTATTTCTCAGAAATAA+TGG 0.269349 6_4:-68716371 Msa0994260:CDS
GGCGATGATGTTTGCTTACT+TGG 0.288978 6_4:+68713959 None:intergenic
ACGACATTTACGATCGAATA+TGG 0.288988 6_4:-68716576 Msa0994260:CDS
ATTTCAAGTGATGATATAAA+AGG 0.289413 6_4:+68717369 None:intergenic
AGGAACTATAGGACTCAAAA+AGG 0.296208 6_4:+68716300 None:intergenic
GTGTTTGATCTTCAATTTGA+TGG 0.296625 6_4:-68717510 Msa0994260:CDS
GCATCCCCTGAACGAAATTC+TGG 0.299178 6_4:+68713824 None:intergenic
GGTGGTGAATCAATTACATT+TGG 0.307596 6_4:+68713851 None:intergenic
TTTATCAGTGAAAGATTTAG+AGG 0.315077 6_4:+68717743 None:intergenic
GGCAAAAGGCCTAGGAAATT+AGG 0.323590 6_4:+68714732 None:intergenic
AATACATGCAATTTATCAAT+AGG 0.324435 6_4:-68716426 Msa0994260:CDS
TGGCACTATACCTGCATCTT+TGG 0.326101 6_4:-68714576 Msa0994260:CDS
TGAGTAAAAGAAAACTTAAA+AGG 0.330123 6_4:+68717832 None:intergenic
TCAATTTGATGGTAACTATT+GGG 0.333029 6_4:-68717499 Msa0994260:CDS
TGTATCCAATCCCAACTATA+AGG 0.370450 6_4:+68715114 None:intergenic
AAATATCTTAGAGTGCTTAA+TGG 0.380504 6_4:+68717642 None:intergenic
ATAAACTTTGTGAAAATCAT+TGG 0.380689 6_4:+68713728 None:intergenic
CAATGCTGTTACACGAGGTT+TGG 0.390206 6_4:+68715077 None:intergenic
TATGCTAGTGAAATTTCCTT+TGG 0.390714 6_4:+68717422 None:intergenic
GCAGGAACTTGTCTTACAAT+AGG 0.391305 6_4:-68714604 Msa0994260:intron
TTGGTGGAAATGAAACTATA+AGG 0.396160 6_4:-68717272 Msa0994260:intron
CAATCCCAACTATAAGGATA+TGG 0.397012 6_4:+68715120 None:intergenic
ACTTACAATGTCTTGAGATT+AGG 0.399373 6_4:+68714711 None:intergenic
GTCTACCATATCCTTATAGT+TGG 0.400144 6_4:-68715125 Msa0994260:CDS
AGTCCTATAGTTCCTCCTCT+TGG 0.400671 6_4:-68716292 Msa0994260:CDS
TTGCAATGGAGATATGCTTT+TGG 0.410315 6_4:-68717291 Msa0994260:CDS
TTGCAAAATAATACTATTGA+AGG 0.415770 6_4:-68714762 Msa0994260:CDS
CTTCCAAGAGGAGGAACTAT+AGG 0.418083 6_4:+68716289 None:intergenic
CGAATATGGACACCGGCATA+TGG 0.421534 6_4:-68716562 Msa0994260:CDS
GATGATGACTACATTCAAAA+TGG 0.421759 6_4:-68717699 Msa0994260:CDS
CATATCCTTATAGTTGGGAT+TGG 0.431394 6_4:-68715119 Msa0994260:CDS
TTGTCTTACAATAGGTTCAA+TGG 0.431533 6_4:-68714596 Msa0994260:CDS
CACCACCTCAACTTATTCTA+GGG 0.436045 6_4:-68713880 Msa0994260:CDS
GCAGTCATGGAACTGAAATC+TGG 0.436453 6_4:+68714924 None:intergenic
CATTTGAAGTGCTTGTGGAT+TGG 0.444317 6_4:-68715161 Msa0994260:CDS
ATCACTTGAAATAAGAAGCT+TGG 0.453928 6_4:-68717358 Msa0994260:CDS
GGGGATGCATCAGTGGGAAA+TGG 0.454241 6_4:-68713809 Msa0994260:CDS
CACAACAAATAATTGTCTAT+CGG 0.456772 6_4:-68714014 Msa0994260:CDS
GGACCTATTCCTAATTTCCT+AGG 0.458516 6_4:-68714741 Msa0994260:CDS
TTCTTATTCACCAAAGATGC+AGG 0.459461 6_4:+68714566 None:intergenic
CATTGTTTCAAGTGCAGTCA+TGG 0.463257 6_4:+68714911 None:intergenic
AGGCCTAGGAAATTAGGAAT+AGG 0.464644 6_4:+68714738 None:intergenic
ACAACAAATAATTGTCTATC+GGG 0.464672 6_4:-68714013 Msa0994260:CDS
ATGTCTTGAGATTAGGCAAA+AGG 0.465531 6_4:+68714718 None:intergenic
GTGGTGAATCAATTACATTT+GGG 0.467509 6_4:+68713852 None:intergenic
TTGCAAAATCAAAGCATGAT+TGG 0.470530 6_4:+68717308 None:intergenic
TCTACCATATCCTTATAGTT+GGG 0.474593 6_4:-68715124 Msa0994260:CDS
TCAAAATGACTATACATTGT+AGG 0.475420 6_4:+68717333 None:intergenic
TGAGATTAGGCAAAAGGCCT+AGG 0.483293 6_4:+68714724 None:intergenic
CCTGAACGAAATTCTGGAAA+AGG 0.492638 6_4:+68713830 None:intergenic
ACTTCAAGAGCATTAAGTAT+AGG 0.496085 6_4:+68716181 None:intergenic
ATTCGATCGTAAATGTCGTC+CGG 0.496173 6_4:+68716580 None:intergenic
ATAAGTGATGCTTTCAATGC+AGG 0.505063 6_4:-68716151 Msa0994260:CDS
GATATAAAAGGAAATTGAGT+AGG 0.506134 6_4:+68717381 None:intergenic
AGGTTTGTTACAGCTTAAGT+TGG 0.522113 6_4:-68715184 Msa0994260:CDS
CTATAAGGATATGGTAGACA+TGG 0.530949 6_4:+68715129 None:intergenic
CCTAAAATAAGCTGAGGTGG+TGG 0.537757 6_4:+68713935 None:intergenic
TATTCCATCAAAGTTCCAAA+AGG 0.539806 6_4:-68717597 Msa0994260:CDS
TATCAATAGGCTTCCAGCAG+AGG 0.541708 6_4:-68716413 Msa0994260:CDS
ATAAGTTGAGGTGGTGGTGG+TGG 0.543687 6_4:+68713887 None:intergenic
GTTGGCATTTGAAGTGCTTG+TGG 0.543723 6_4:-68715166 Msa0994260:CDS
TCAAGAGCATTAAGTATAGG+AGG 0.545897 6_4:+68716184 None:intergenic
AAAATAAGCTGAGGTGGTGG+TGG 0.547921 6_4:+68713938 None:intergenic
AATGAAGTGTCAACCTCTCA+AGG 0.556085 6_4:-68713990 Msa0994260:CDS
TTCGATCGTAAATGTCGTCC+GGG 0.557720 6_4:+68716581 None:intergenic
CTTGATGAATAGACCTCTTG+AGG 0.562625 6_4:+68717672 None:intergenic
TCGTTCAGGGGATGCATCAG+TGG 0.564300 6_4:-68713816 Msa0994260:CDS
CCTAGAATAAGTTGAGGTGG+TGG 0.573389 6_4:+68713881 None:intergenic
AGAATAAGTTGAGGTGGTGG+TGG 0.573892 6_4:+68713884 None:intergenic
CGTTCAGGGGATGCATCAGT+GGG 0.574697 6_4:-68713815 Msa0994260:CDS
TGATGGTAACTATTGGGCAA+CGG 0.579493 6_4:-68717493 Msa0994260:CDS
CTCACAAATATTGTGAGGGA+GGG 0.579974 6_4:+68717780 None:intergenic
CTTGGTGACGATGCCTTGAG+AGG 0.584817 6_4:+68713977 None:intergenic
TCAAAATGGTATACCTCAAG+AGG 0.585508 6_4:-68717685 Msa0994260:CDS
TTCTGCTGTACTGATATCAA+AGG 0.591106 6_4:+68716504 None:intergenic
GCAGGAACTGATAGCAGAGA+TGG 0.592582 6_4:-68716133 Msa0994260:intron
ATATTTGTGAGTATCAATTG+TGG 0.599435 6_4:-68717768 Msa0994260:CDS
TCTTTCACACTTCCAAGAGG+AGG 0.599641 6_4:+68716280 None:intergenic
CTTAGTGGTTATGACTTGCA+AGG 0.599758 6_4:-68714954 Msa0994260:CDS
TACACGAGGTTTGGCATCAG+AGG 0.601006 6_4:+68715086 None:intergenic
ACTCACAAATATTGTGAGGG+AGG 0.606267 6_4:+68717779 None:intergenic
TCCCCTAGAATAAGTTGAGG+TGG 0.614508 6_4:+68713878 None:intergenic
TCACCTAAAATAAGCTGAGG+TGG 0.616632 6_4:+68713932 None:intergenic
GAAGCAATATATGTAACCAA+AGG 0.617161 6_4:-68717438 Msa0994260:CDS
GAAGTGCTTGTGGATTGGAG+TGG 0.619148 6_4:-68715156 Msa0994260:CDS
GAAAGTAGGATACCATATGC+CGG 0.624672 6_4:+68716550 None:intergenic
GAACGAAATTCTGGAAAAGG+TGG 0.625423 6_4:+68713833 None:intergenic
GATACTCACAAATATTGTGA+GGG 0.631641 6_4:+68717776 None:intergenic
TCAAATTGAAGATCAAACAC+TGG 0.635505 6_4:+68717513 None:intergenic
TGATACTCACAAATATTGTG+AGG 0.644486 6_4:+68717775 None:intergenic
ACTTACAATGCTGTTACACG+AGG 0.647769 6_4:+68715072 None:intergenic
ACTTCTTTCACACTTCCAAG+AGG 0.652469 6_4:+68716277 None:intergenic
ATTGGAACAAACTAGGTACC+CGG 0.655441 6_4:-68716599 Msa0994260:intron
AATTGAAGATCAAACACTGG+TGG 0.660940 6_4:+68717516 None:intergenic
TATAAGGATATGGTAGACAT+GGG 0.661757 6_4:+68715130 None:intergenic
ACCACCTCAACTTATTCTAG+GGG 0.665832 6_4:-68713879 Msa0994260:CDS
TCATCACCTAAAATAAGCTG+AGG 0.673295 6_4:+68713929 None:intergenic
TCATCCCCTAGAATAAGTTG+AGG 0.677654 6_4:+68713875 None:intergenic
TTACGATCGAATATGGACAC+CGG 0.697980 6_4:-68716569 Msa0994260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTAACTATTTATTATA+TGG - chr6_4:68714632-68714651 Msa0994260:intron 10.0%
!!! TTATTATTTTAATTGAATCA+AGG + chr6_4:68715833-68715852 None:intergenic 10.0%
!! GTAATTGAATTTAATAATTA+TGG - chr6_4:68715916-68715935 Msa0994260:intron 10.0%
!!! TTTTTCTATCTATTTTTAAA+TGG - chr6_4:68716713-68716732 Msa0994260:intron 10.0%
!! AATAAAATACAATAAACTAT+TGG + chr6_4:68716743-68716762 None:intergenic 10.0%
!!! TATATATATATAATGTTTTC+AGG + chr6_4:68717393-68717412 None:intergenic 10.0%
!!! ATTTTTTTTAACAATTTTTC+TGG - chr6_4:68717487-68717506 Msa0994260:CDS 10.0%
!! ATCAACATAATAAAAATTTG+TGG + chr6_4:68714103-68714122 None:intergenic 15.0%
!! AGTATCAAAATTTGATAAAT+TGG + chr6_4:68714734-68714753 None:intergenic 15.0%
!!! TATTGTTACATACTTTTTTT+AGG + chr6_4:68714837-68714856 None:intergenic 15.0%
!! TAAAATAAAATAAAGTCAAC+CGG - chr6_4:68715555-68715574 Msa0994260:intron 15.0%
!! TATTAAACATAGATAAAAAC+AGG + chr6_4:68715782-68715801 None:intergenic 15.0%
!!! GATATTATCAAATTTTACAT+AGG - chr6_4:68715945-68715964 Msa0994260:intron 15.0%
!! TTTGATATCATCTTAAAATT+TGG + chr6_4:68716076-68716095 None:intergenic 15.0%
!!! CTTATAAGTCATTTTTTTAA+GGG - chr6_4:68716192-68716211 Msa0994260:CDS 15.0%
!! TATAATAGCTACTAATAATT+TGG - chr6_4:68716562-68716581 Msa0994260:CDS 15.0%
!! TTACTTAATGAAATTAGAAT+CGG + chr6_4:68717192-68717211 None:intergenic 15.0%
!! AAAAATATTTGATGAAAATG+TGG + chr6_4:68717342-68717361 None:intergenic 15.0%
!! GTTTCTAACTTTAATTAATT+TGG - chr6_4:68717517-68717536 Msa0994260:CDS 15.0%
!! TGAGTAAAAGAAAACTTAAA+AGG + chr6_4:68713735-68713754 None:intergenic 20.0%
!! CTGATAAAAACAATATAAGA+TGG - chr6_4:68713836-68713855 Msa0994260:CDS 20.0%
!!! ATTTCAAGTGATGATATAAA+AGG + chr6_4:68714198-68714217 None:intergenic 20.0%
!! AATACATGCAATTTATCAAT+AGG - chr6_4:68715138-68715157 Msa0994260:CDS 20.0%
!! ATATCATCTTAAAATTTGGA+TGG + chr6_4:68716072-68716091 None:intergenic 20.0%
!! CCTTAAAAAAATGACTTATA+AGG + chr6_4:68716194-68716213 None:intergenic 20.0%
!!! CCTTATAAGTCATTTTTTTA+AGG - chr6_4:68716191-68716210 Msa0994260:CDS 20.0%
!!! CTCTATAAAATCGATTTATA+AGG + chr6_4:68716219-68716238 None:intergenic 20.0%
!! AGTTAGTTGAAAATAAATCA+TGG + chr6_4:68716326-68716345 None:intergenic 20.0%
!!! GTTTTATTTTGTCAAATTAG+TGG - chr6_4:68716356-68716375 Msa0994260:CDS 20.0%
!! TTGCAAAATAATACTATTGA+AGG - chr6_4:68716802-68716821 Msa0994260:intron 20.0%
!! ATAAACTTTGTGAAAATCAT+TGG + chr6_4:68717839-68717858 None:intergenic 20.0%
! ATATTTGTGAGTATCAATTG+TGG - chr6_4:68713796-68713815 Msa0994260:CDS 25.0%
! TTTATCAGTGAAAGATTTAG+AGG + chr6_4:68713824-68713843 None:intergenic 25.0%
! AAAAACAATATAAGATGGAG+TGG - chr6_4:68713841-68713860 Msa0994260:CDS 25.0%
!! AAATATCTTAGAGTGCTTAA+TGG + chr6_4:68713925-68713944 None:intergenic 25.0%
!!! AGCAATTTTTCTTTCTAGTT+GGG + chr6_4:68713948-68713967 None:intergenic 25.0%
!!! TAGCAATTTTTCTTTCTAGT+TGG + chr6_4:68713949-68713968 None:intergenic 25.0%
!! TTCAATTTGATGGTAACTAT+TGG - chr6_4:68714064-68714083 Msa0994260:intron 25.0%
!! TCAATTTGATGGTAACTATT+GGG - chr6_4:68714065-68714084 Msa0994260:intron 25.0%
! GATATAAAAGGAAATTGAGT+AGG + chr6_4:68714186-68714205 None:intergenic 25.0%
! TCAAAATGACTATACATTGT+AGG + chr6_4:68714234-68714253 None:intergenic 25.0%
! TTGAAAAGTAGGAACTAAAA+AGG + chr6_4:68714341-68714360 None:intergenic 25.0%
!! ACACAATTTTCTTGAAAAGT+AGG + chr6_4:68714352-68714371 None:intergenic 25.0%
! TTTATTATATGGAGAGAAGT+TGG - chr6_4:68714643-68714662 Msa0994260:intron 25.0%
!!! CACATCATTGTTTTAAATTG+CGG - chr6_4:68714755-68714774 Msa0994260:CDS 25.0%
! CCAACAAATAATGTCAAAAA+TGG + chr6_4:68714938-68714957 None:intergenic 25.0%
!!! CCATTTTTGACATTATTTGT+TGG - chr6_4:68714935-68714954 Msa0994260:CDS 25.0%
!! TGCTTATTTCTCAGAAATAA+TGG - chr6_4:68715193-68715212 Msa0994260:intron 25.0%
! TTCATAGCTAATATGAAAAC+CGG + chr6_4:68715577-68715596 None:intergenic 25.0%
! TATTAACTCATTTACAATCC+AGG - chr6_4:68715881-68715900 Msa0994260:intron 25.0%
! ATTAACTCATTTACAATCCA+GGG - chr6_4:68715882-68715901 Msa0994260:intron 25.0%
! CTTGAAAATCTGTGTATAAA+TGG - chr6_4:68716009-68716028 Msa0994260:intron 25.0%
!! AAGATAATCTAAGATCTCTT+TGG - chr6_4:68716094-68716113 Msa0994260:intron 25.0%
! TCTTGTCATCATTAGAATTT+AGG + chr6_4:68716257-68716276 None:intergenic 25.0%
!! TATTTTGTCAAATTAGTGGA+AGG - chr6_4:68716360-68716379 Msa0994260:CDS 25.0%
! GTATGTGACTTGAAAAATAT+AGG - chr6_4:68716584-68716603 Msa0994260:CDS 25.0%
! GAAAAATATAGGTATCTTAG+TGG - chr6_4:68716595-68716614 Msa0994260:intron 25.0%
!!! ATTTTTTTCTTGATTCATGC+AGG - chr6_4:68716942-68716961 Msa0994260:intron 25.0%
! TTAATGCAATGGGAAAATAA+TGG + chr6_4:68717051-68717070 None:intergenic 25.0%
! TTTCCCATTGCATTAAAATA+CGG - chr6_4:68717055-68717074 Msa0994260:intron 25.0%
! CACAACAAATAATTGTCTAT+CGG - chr6_4:68717550-68717569 Msa0994260:CDS 25.0%
! ACAACAAATAATTGTCTATC+GGG - chr6_4:68717551-68717570 Msa0994260:CDS 25.0%
GATACTCACAAATATTGTGA+GGG + chr6_4:68713791-68713810 None:intergenic 30.0%
TGATACTCACAAATATTGTG+AGG + chr6_4:68713792-68713811 None:intergenic 30.0%
GATGATGACTACATTCAAAA+TGG - chr6_4:68713865-68713884 Msa0994260:CDS 30.0%
TATTCCATCAAAGTTCCAAA+AGG - chr6_4:68713967-68713986 Msa0994260:CDS 30.0%
!!! GCAAGAATTTTTTCACCTTT+TGG + chr6_4:68713985-68714004 None:intergenic 30.0%
AAGGTGAAAAAATTCTTGCT+AGG - chr6_4:68713986-68714005 Msa0994260:CDS 30.0%
AGGTGAAAAAATTCTTGCTA+GGG - chr6_4:68713987-68714006 Msa0994260:CDS 30.0%
TCAAATTGAAGATCAAACAC+TGG + chr6_4:68714054-68714073 None:intergenic 30.0%
GTGTTTGATCTTCAATTTGA+TGG - chr6_4:68714054-68714073 Msa0994260:intron 30.0%
GAAGCAATATATGTAACCAA+AGG - chr6_4:68714126-68714145 Msa0994260:intron 30.0%
TATGCTAGTGAAATTTCCTT+TGG + chr6_4:68714145-68714164 None:intergenic 30.0%
ATCACTTGAAATAAGAAGCT+TGG - chr6_4:68714206-68714225 Msa0994260:intron 30.0%
TTGCAAAATCAAAGCATGAT+TGG + chr6_4:68714259-68714278 None:intergenic 30.0%
!! ATCATGCTTTGATTTTGCAA+TGG - chr6_4:68714259-68714278 Msa0994260:intron 30.0%
TTGGTGGAAATGAAACTATA+AGG - chr6_4:68714292-68714311 Msa0994260:intron 30.0%
AAGGAATAGAGGGAATAATT+TGG + chr6_4:68714322-68714341 None:intergenic 30.0%
AGGAACTAAAAAGGAATAGA+GGG + chr6_4:68714332-68714351 None:intergenic 30.0%
TAGGAACTAAAAAGGAATAG+AGG + chr6_4:68714333-68714352 None:intergenic 30.0%
! GGATAGTTTACTACTCATTT+TGG + chr6_4:68714444-68714463 None:intergenic 30.0%
! CAGTAGCGTTAAAACTTTTA+GGG + chr6_4:68714465-68714484 None:intergenic 30.0%
! ACAGTAGCGTTAAAACTTTT+AGG + chr6_4:68714466-68714485 None:intergenic 30.0%
TTAACGCTACTGTATGTTTA+AGG - chr6_4:68714473-68714492 Msa0994260:intron 30.0%
TTTAAAAACCCTTTGCAGTA+GGG + chr6_4:68714800-68714819 None:intergenic 30.0%
TGTGAGTGAAAGTGAAATTA+CGG + chr6_4:68714866-68714885 None:intergenic 30.0%
AATTTCACTTTCACTCACAT+CGG - chr6_4:68714867-68714886 Msa0994260:intron 30.0%
! TTATTTGTTGGTGCATTGAT+TGG - chr6_4:68714947-68714966 Msa0994260:CDS 30.0%
!!! GAAATAATGGAAAGTGCTTT+TGG - chr6_4:68715206-68715225 Msa0994260:intron 30.0%
!! ACTTCAAGAGCATTAAGTAT+AGG + chr6_4:68715386-68715405 None:intergenic 30.0%
TTATAAGCTGTTCATCCAAA+CGG + chr6_4:68715471-68715490 None:intergenic 30.0%
!! CTTATTTTCAAAAGCTCTTC+AGG + chr6_4:68715617-68715636 None:intergenic 30.0%
!! GACTATTTAGAAGAGCATTA+TGG + chr6_4:68715675-68715694 None:intergenic 30.0%
! TCAAATTTTACATAGGCATC+CGG - chr6_4:68715952-68715971 Msa0994260:intron 30.0%
TATAAGGATATGGTAGACAT+GGG + chr6_4:68716437-68716456 None:intergenic 30.0%
TCTACCATATCCTTATAGTT+GGG - chr6_4:68716440-68716459 Msa0994260:CDS 30.0%
ACTTACAATGTCTTGAGATT+AGG + chr6_4:68716856-68716875 None:intergenic 30.0%
TTGTCTTACAATAGGTTCAA+TGG - chr6_4:68716968-68716987 Msa0994260:intron 30.0%
!!! CTTCCGTATTTTAATGCAAT+GGG + chr6_4:68717061-68717080 None:intergenic 30.0%
TTGGTTAGAGAAAAATTGAG+AGG - chr6_4:68717089-68717108 Msa0994260:intron 30.0%
GGTGATGAACCAAATATAAT+TGG - chr6_4:68717650-68717669 Msa0994260:CDS 30.0%
GTGGTGAATCAATTACATTT+GGG + chr6_4:68717715-68717734 None:intergenic 30.0%
TCAAAATGGTATACCTCAAG+AGG - chr6_4:68713879-68713898 Msa0994260:CDS 35.0%
!!! TTCACCTTTTGGAACTTTGA+TGG + chr6_4:68713974-68713993 None:intergenic 35.0%
AATTGAAGATCAAACACTGG+TGG + chr6_4:68714051-68714070 None:intergenic 35.0%
! TTGCAATGGAGATATGCTTT+TGG - chr6_4:68714273-68714292 Msa0994260:intron 35.0%
! CTTTAAAAACCCTTTGCAGT+AGG + chr6_4:68714801-68714820 None:intergenic 35.0%
CGCTGAGAATCTTTATATTG+TGG + chr6_4:68714893-68714912 None:intergenic 35.0%
!! TGCATTGATTGGAACAAACT+AGG - chr6_4:68714958-68714977 Msa0994260:CDS 35.0%
ACGACATTTACGATCGAATA+TGG - chr6_4:68714988-68715007 Msa0994260:intron 35.0%
!!! TGATTCCTCGCTTTTTACTT+CGG + chr6_4:68715039-68715058 None:intergenic 35.0%
! TTCTGCTGTACTGATATCAA+AGG + chr6_4:68715063-68715082 None:intergenic 35.0%
! TAAACATGATTTTCCTCTGC+TGG + chr6_4:68715167-68715186 None:intergenic 35.0%
GGAACTATAGGACTCAAAAA+GGG + chr6_4:68715266-68715285 None:intergenic 35.0%
AGGAACTATAGGACTCAAAA+AGG + chr6_4:68715267-68715286 None:intergenic 35.0%
!! TCAAGAGCATTAAGTATAGG+AGG + chr6_4:68715383-68715402 None:intergenic 35.0%
ATAAGTGATGCTTTCAATGC+AGG - chr6_4:68715413-68715432 Msa0994260:intron 35.0%
GTAAGTGACTAAATTCCGTT+TGG - chr6_4:68715453-68715472 Msa0994260:intron 35.0%
TGAATTTATCCGATAGTGAG+TGG + chr6_4:68716120-68716139 None:intergenic 35.0%
!! AGGTTTGTTACAGCTTAAGT+TGG - chr6_4:68716380-68716399 Msa0994260:CDS 35.0%
CTATAAGGATATGGTAGACA+TGG + chr6_4:68716438-68716457 None:intergenic 35.0%
GTCTACCATATCCTTATAGT+TGG - chr6_4:68716439-68716458 Msa0994260:CDS 35.0%
CAATCCCAACTATAAGGATA+TGG + chr6_4:68716447-68716466 None:intergenic 35.0%
CATATCCTTATAGTTGGGAT+TGG - chr6_4:68716445-68716464 Msa0994260:CDS 35.0%
TGTATCCAATCCCAACTATA+AGG + chr6_4:68716453-68716472 None:intergenic 35.0%
ATGTCTTGAGATTAGGCAAA+AGG + chr6_4:68716849-68716868 None:intergenic 35.0%
TTCTTATTCACCAAAGATGC+AGG + chr6_4:68717001-68717020 None:intergenic 35.0%
!!! CCTTCCGTATTTTAATGCAA+TGG + chr6_4:68717062-68717081 None:intergenic 35.0%
CCATTGCATTAAAATACGGA+AGG - chr6_4:68717059-68717078 Msa0994260:intron 35.0%
TTGCATTAAAATACGGAAGG+AGG - chr6_4:68717062-68717081 Msa0994260:intron 35.0%
TCATCACCTAAAATAAGCTG+AGG + chr6_4:68717638-68717657 None:intergenic 35.0%
GGTGGTGAATCAATTACATT+TGG + chr6_4:68717716-68717735 None:intergenic 35.0%
! CTTTTCCAGAATTTCGTTCA+GGG - chr6_4:68717735-68717754 Msa0994260:CDS 35.0%
! TTTTCCAGAATTTCGTTCAG+GGG - chr6_4:68717736-68717755 Msa0994260:CDS 35.0%
CTCACAAATATTGTGAGGGA+GGG + chr6_4:68713787-68713806 None:intergenic 40.0%
ACTCACAAATATTGTGAGGG+AGG + chr6_4:68713788-68713807 None:intergenic 40.0%
CTTGATGAATAGACCTCTTG+AGG + chr6_4:68713895-68713914 None:intergenic 40.0%
! GCTAGGGCAAGCTTTTATTA+TGG - chr6_4:68714003-68714022 Msa0994260:CDS 40.0%
TGATGGTAACTATTGGGCAA+CGG - chr6_4:68714071-68714090 Msa0994260:intron 40.0%
! CAATGGAGATATGCTTTTGG+TGG - chr6_4:68714276-68714295 Msa0994260:intron 40.0%
! CGCTACTGTATGTTTAAGGT+TGG - chr6_4:68714477-68714496 Msa0994260:intron 40.0%
TTAAGGTTGGATTCACACAC+AGG - chr6_4:68714490-68714509 Msa0994260:intron 40.0%
ATTGGAACAAACTAGGTACC+CGG - chr6_4:68714965-68714984 Msa0994260:intron 40.0%
ATTCGATCGTAAATGTCGTC+CGG + chr6_4:68714987-68715006 None:intergenic 40.0%
TTACGATCGAATATGGACAC+CGG - chr6_4:68714995-68715014 Msa0994260:intron 40.0%
GAAAGTAGGATACCATATGC+CGG + chr6_4:68715017-68715036 None:intergenic 40.0%
!! CGCTTTTTACTTCGGAAAGT+AGG + chr6_4:68715031-68715050 None:intergenic 40.0%
ACTTTCCGAAGTAAAAAGCG+AGG - chr6_4:68715031-68715050 Msa0994260:intron 40.0%
!! TTTTTCAATGCAGCTTCTGG+TGG + chr6_4:68715092-68715111 None:intergenic 40.0%
!! GCATTTTTCAATGCAGCTTC+TGG + chr6_4:68715095-68715114 None:intergenic 40.0%
ACTTCTTTCACACTTCCAAG+AGG + chr6_4:68715290-68715309 None:intergenic 40.0%
TCATTTACAATCCAGGGTAG+AGG - chr6_4:68715888-68715907 Msa0994260:intron 40.0%
AATTACAAACACCTCTACCC+TGG + chr6_4:68715902-68715921 None:intergenic 40.0%
! CATTTGAAGTGCTTGTGGAT+TGG - chr6_4:68716403-68716422 Msa0994260:CDS 40.0%
ACTTACAATGCTGTTACACG+AGG + chr6_4:68716495-68716514 None:intergenic 40.0%
! CTTAGTGGTTATGACTTGCA+AGG - chr6_4:68716610-68716629 Msa0994260:intron 40.0%
! CATTGTTTCAAGTGCAGTCA+TGG + chr6_4:68716656-68716675 None:intergenic 40.0%
GGACCTATTCCTAATTTCCT+AGG - chr6_4:68716823-68716842 Msa0994260:intron 40.0%
AGGCCTAGGAAATTAGGAAT+AGG + chr6_4:68716829-68716848 None:intergenic 40.0%
GCAGGAACTTGTCTTACAAT+AGG - chr6_4:68716960-68716979 Msa0994260:intron 40.0%
! AATGAAGTGTCAACCTCTCA+AGG - chr6_4:68717574-68717593 Msa0994260:CDS 40.0%
TCACCTAAAATAAGCTGAGG+TGG + chr6_4:68717635-68717654 None:intergenic 40.0%
GGTGGCGAACCAATTATATT+TGG + chr6_4:68717662-68717681 None:intergenic 40.0%
CACCACCTCAACTTATTCTA+GGG - chr6_4:68717684-68717703 Msa0994260:CDS 40.0%
ACCACCTCAACTTATTCTAG+GGG - chr6_4:68717685-68717704 Msa0994260:CDS 40.0%
TCATCCCCTAGAATAAGTTG+AGG + chr6_4:68717692-68717711 None:intergenic 40.0%
! GAACGAAATTCTGGAAAAGG+TGG + chr6_4:68717734-68717753 None:intergenic 40.0%
! CCTGAACGAAATTCTGGAAA+AGG + chr6_4:68717737-68717756 None:intergenic 40.0%
! CCTTTTCCAGAATTTCGTTC+AGG - chr6_4:68717734-68717753 Msa0994260:CDS 40.0%
TTAGTTTCCACAGTTGCGTG+CGG + chr6_4:68714402-68714421 None:intergenic 45.0%
AATTGCAGCCCTACTGCAAA+GGG - chr6_4:68714789-68714808 Msa0994260:intron 45.0%
TTCGATCGTAAATGTCGTCC+GGG + chr6_4:68714986-68715005 None:intergenic 45.0%
TATCAATAGGCTTCCAGCAG+AGG - chr6_4:68715151-68715170 Msa0994260:CDS 45.0%
AGTCCTATAGTTCCTCCTCT+TGG - chr6_4:68715272-68715291 Msa0994260:intron 45.0%
CTTCCAAGAGGAGGAACTAT+AGG + chr6_4:68715278-68715297 None:intergenic 45.0%
TCTTTCACACTTCCAAGAGG+AGG + chr6_4:68715287-68715306 None:intergenic 45.0%
ATGAAGACCGTCAACATCAC+CGG + chr6_4:68715974-68715993 None:intergenic 45.0%
TCTCTTTGGCCACTCACTAT+CGG - chr6_4:68716108-68716127 Msa0994260:intron 45.0%
ATTGTCGAGATGTCCAGTTG+TGG - chr6_4:68716144-68716163 Msa0994260:CDS 45.0%
TTGTCGAGATGTCCAGTTGT+GGG - chr6_4:68716145-68716164 Msa0994260:CDS 45.0%
TGTCCAGTTGTGGGCATAAA+AGG - chr6_4:68716154-68716173 Msa0994260:CDS 45.0%
CAGTTGTGGGCATAAAAGGT+GGG - chr6_4:68716158-68716177 Msa0994260:CDS 45.0%
AGTTGTGGGCATAAAAGGTG+GGG - chr6_4:68716159-68716178 Msa0994260:CDS 45.0%
! GTTGGCATTTGAAGTGCTTG+TGG - chr6_4:68716398-68716417 Msa0994260:CDS 45.0%
CAATGCTGTTACACGAGGTT+TGG + chr6_4:68716490-68716509 None:intergenic 45.0%
GCAGTCATGGAACTGAAATC+TGG + chr6_4:68716643-68716662 None:intergenic 45.0%
GGCAAAAGGCCTAGGAAATT+AGG + chr6_4:68716835-68716854 None:intergenic 45.0%
TGAGATTAGGCAAAAGGCCT+AGG + chr6_4:68716843-68716862 None:intergenic 45.0%
TGGCACTATACCTGCATCTT+TGG - chr6_4:68716988-68717007 Msa0994260:intron 45.0%
AAATACGGAAGGAGGAGAGT+TGG - chr6_4:68717070-68717089 Msa0994260:intron 45.0%
GGCGATGATGTTTGCTTACT+TGG + chr6_4:68717608-68717627 None:intergenic 45.0%
! AAAATAAGCTGAGGTGGTGG+TGG + chr6_4:68717629-68717648 None:intergenic 45.0%
CCTAAAATAAGCTGAGGTGG+TGG + chr6_4:68717632-68717651 None:intergenic 45.0%
!! CCACCACCTCAGCTTATTTT+AGG - chr6_4:68717629-68717648 Msa0994260:CDS 45.0%
! AGAATAAGTTGAGGTGGTGG+TGG + chr6_4:68717683-68717702 None:intergenic 45.0%
! CCTAGAATAAGTTGAGGTGG+TGG + chr6_4:68717686-68717705 None:intergenic 45.0%
CCACCACCTCAACTTATTCT+AGG - chr6_4:68717683-68717702 Msa0994260:CDS 45.0%
! TCCCCTAGAATAAGTTGAGG+TGG + chr6_4:68717689-68717708 None:intergenic 45.0%
TGGATTCACACACAGGACCT+TGG - chr6_4:68714497-68714516 Msa0994260:intron 50.0%
AAGACAGCGCACGTTAACCA+AGG + chr6_4:68714517-68714536 None:intergenic 50.0%
CAATTGCAGCCCTACTGCAA+AGG - chr6_4:68714788-68714807 Msa0994260:intron 50.0%
CGAATATGGACACCGGCATA+TGG - chr6_4:68715002-68715021 Msa0994260:intron 50.0%
GCAGGAACTGATAGCAGAGA+TGG - chr6_4:68715431-68715450 Msa0994260:intron 50.0%
TAGGCATCCGGTGATGTTGA+CGG - chr6_4:68715964-68715983 Msa0994260:intron 50.0%
! CCACCTTTTATGCCCACAAC+TGG + chr6_4:68716160-68716179 None:intergenic 50.0%
CCAGTTGTGGGCATAAAAGG+TGG - chr6_4:68716157-68716176 Msa0994260:CDS 50.0%
GTTGTGGGCATAAAAGGTGG+GGG - chr6_4:68716160-68716179 Msa0994260:CDS 50.0%
!! GAAGTGCTTGTGGATTGGAG+TGG - chr6_4:68716408-68716427 Msa0994260:CDS 50.0%
TACACGAGGTTTGGCATCAG+AGG + chr6_4:68716481-68716500 None:intergenic 50.0%
!! ATAAGTTGAGGTGGTGGTGG+TGG + chr6_4:68717680-68717699 None:intergenic 50.0%
GCATCCCCTGAACGAAATTC+TGG + chr6_4:68717743-68717762 None:intergenic 50.0%
GTATCTTCCGCACGCAACTG+TGG - chr6_4:68714392-68714411 Msa0994260:intron 55.0%
!! CTTGGTGACGATGCCTTGAG+AGG + chr6_4:68717590-68717609 None:intergenic 55.0%
TCGTTCAGGGGATGCATCAG+TGG - chr6_4:68717748-68717767 Msa0994260:CDS 55.0%
CGTTCAGGGGATGCATCAGT+GGG - chr6_4:68717749-68717768 Msa0994260:CDS 55.0%
GGGGATGCATCAGTGGGAAA+TGG - chr6_4:68717755-68717774 Msa0994260:CDS 55.0%
AGGGCTGCAATTGCAGTCGC+AGG + chr6_4:68714781-68714800 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 68713724 68717862 68713724 ID=Msa0994260;Name=Msa0994260
chr6_4 mRNA 68713724 68717862 68713724 ID=Msa0994260-mRNA-1;Parent=Msa0994260;Name=Msa0994260-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|7|0|572
chr6_4 exon 68717273 68717862 68717273 ID=Msa0994260-mRNA-1:exon:12679;Parent=Msa0994260-mRNA-1
chr6_4 exon 68716134 68716606 68716134 ID=Msa0994260-mRNA-1:exon:12678;Parent=Msa0994260-mRNA-1
chr6_4 exon 68715078 68715210 68715078 ID=Msa0994260-mRNA-1:exon:12677;Parent=Msa0994260-mRNA-1
chr6_4 exon 68714912 68714980 68714912 ID=Msa0994260-mRNA-1:exon:12676;Parent=Msa0994260-mRNA-1
chr6_4 exon 68714717 68714788 68714717 ID=Msa0994260-mRNA-1:exon:12675;Parent=Msa0994260-mRNA-1
chr6_4 exon 68714554 68714622 68714554 ID=Msa0994260-mRNA-1:exon:12674;Parent=Msa0994260-mRNA-1
chr6_4 exon 68713724 68714036 68713724 ID=Msa0994260-mRNA-1:exon:12673;Parent=Msa0994260-mRNA-1
chr6_4 CDS 68717273 68717862 68717273 ID=Msa0994260-mRNA-1:cds;Parent=Msa0994260-mRNA-1
chr6_4 CDS 68716134 68716606 68716134 ID=Msa0994260-mRNA-1:cds;Parent=Msa0994260-mRNA-1
chr6_4 CDS 68715078 68715210 68715078 ID=Msa0994260-mRNA-1:cds;Parent=Msa0994260-mRNA-1
chr6_4 CDS 68714912 68714980 68714912 ID=Msa0994260-mRNA-1:cds;Parent=Msa0994260-mRNA-1
chr6_4 CDS 68714717 68714788 68714717 ID=Msa0994260-mRNA-1:cds;Parent=Msa0994260-mRNA-1
chr6_4 CDS 68714554 68714622 68714554 ID=Msa0994260-mRNA-1:cds;Parent=Msa0994260-mRNA-1
chr6_4 CDS 68713724 68714036 68713724 ID=Msa0994260-mRNA-1:cds;Parent=Msa0994260-mRNA-1
Gene Sequence

>Msa0994260

ATGAAAAGCCTTTTAAGTTTTCTTTTACTCATAGCAATTTCTTTGCTATCATTCTCAAAACCCTCCCTCACAATATTTGTGAGTATCAATTGTGGATCCTCTAAATCTTTCACTGATAAAAACAATATAAGATGGAGTGGTGATGATGACTACATTCAAAATGGTATACCTCAAGAGGTCTATTCATCAAGTTCTAGTCCATTAAGCACTCTAAGATATTTCCCAACTAGAAAGAAAAATTGCTATTCCATCAAAGTTCCAAAAGGTGAAAAAATTCTTGCTAGGGCAAGCTTTTATTATGGAAATTATGATAATAAATTATCACCACCAGTGTTTGATCTTCAATTTGATGGTAACTATTGGGCAACGGTTAATACCACAAATTTTTATTATGTTGATTATGAAGCAATATATGTAACCAAAGGAAATTTCACTAGCATATGTGTTGCTCAAACAAAACCTACTCAATTTCCTTTTATATCATCACTTGAAATAAGAAGCTTGGATCCTACAATGTATAGTCATTTTGATACCAATCATGCTTTGATTTTGCAATGGAGATATGCTTTTGGTGGAAATGAAACTATAAGGTACCCGGACGACATTTACGATCGAATATGGACACCGGCATATGGTATCCTACTTTCCGAAGTAAAAAGCGAGGAATCAACCTTTGATATCAGTACAGCAGAAGATCGTCCACCAGAAGCTGCATTGAAAAATGCTATTGTTTCATCAAGCACAAATGAATACATGCAATTTATCAATAGGCTTCCAGCAGAGGAAAATCATGTTTATATAAATGCTTATTTCTCAGAAATAATGGAAAGTGCTTTTGGAAAAAGATCAATTCAGATGTATATAGATGACAAACCCTTTTTGAGTCCTATAGTTCCTCCTCTTGGAAGTGTGAAAGAAGTGTATATAACTAATATTACAGCTTCAGCAAATACTACATTTGTTCTGCAAGCTTCAGAGTCTTCTACTCTTCCTCCTATACTTAATGCTCTTGAAGTTTTTACAATAAGTGATGCTTTCAATGCAGGAACTGATAGCAGAGATGTGGAAGGTTTGTTACAGCTTAAGTTGGCATTTGAAGTGCTTGTGGATTGGAGTGGAGACCCATGTCTACCATATCCTTATAGTTGGGATTGGATACAATGTACCTCTGATGCCAAACCTCGTGTAACAGCATTGTATCTTAGTGGTTATGACTTGCAAGGCACTCTTCCAGATTTCAGTTCCATGACTGCACTTGAAACAATTGATTTGCAAAATAATACTATTGAAGGACCTATTCCTAATTTCCTAGGCCTTTTGCCTAATCTCAAGACATTGAACTTGTCTTACAATAGGTTCAATGGCACTATACCTGCATCTTTGGTGAATAAGAAAATTGAAACTGACACAACAAATAATTGTCTATCGGGAATGAAGTGTCAACCTCTCAAGGCATCGTCACCAAGTAAGCAAACATCATCGCCACCACCACCTCAGCTTATTTTAGGTGATGAACCAAATATAATTGGTTCGCCACCACCACCACCTCAACTTATTCTAGGGGATGACCCAAATGTAATTGATTCACCACCTTTTCCAGAATTTCGTTCAGGGGATGCATCAGTGGGAAATGGAAGCTTGAAGAACAACAAACTGAACATATTATTCATACTAGCTGCACAAACTTTGCTACCAATGATTTTCACAAAGTTTATATGA
Protein sequence

>Msa0994260

MKSLLSFLLLIAISLLSFSKPSLTIFVSINCGSSKSFTDKNNIRWSGDDDYIQNGIPQEVYSSSSSPLSTLRYFPTRKKNCYSIKVPKGEKILARASFYYGNYDNKLSPPVFDLQFDGNYWATVNTTNFYYVDYEAIYVTKGNFTSICVAQTKPTQFPFISSLEIRSLDPTMYSHFDTNHALILQWRYAFGGNETIRYPDDIYDRIWTPAYGILLSEVKSEESTFDISTAEDRPPEAALKNAIVSSSTNEYMQFINRLPAEENHVYINAYFSEIMESAFGKRSIQMYIDDKPFLSPIVPPLGSVKEVYITNITASANTTFVLQASESSTLPPILNALEVFTISDAFNAGTDSRDVEGLLQLKLAFEVLVDWSGDPCLPYPYSWDWIQCTSDAKPRVTALYLSGYDLQGTLPDFSSMTALETIDLQNNTIEGPIPNFLGLLPNLKTLNLSYNRFNGTIPASLVNKKIETDTTNNCLSGMKCQPLKASSPSKQTSSPPPPQLILGDEPNIIGSPPPPPQLILGDDPNVIDSPPFPEFRSGDASVGNGSLKNNKLNILFILAAQTLLPMIFTKFI*