Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994570 | XP_003619851.3 | 93.473 | 429 | 17 | 1 | 1 | 418 | 1 | 429 | 0.0 | 804 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994570 | sp|Q9LVI4|TIF6B_ARATH | 37.037 | 405 | 157 | 18 | 1 | 380 | 1 | 332 | 1.09e-42 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994570 | A0A396HFY8 | 93.473 | 429 | 17 | 1 | 1 | 418 | 1 | 429 | 0.0 | 804 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0994570 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0921730 | Msa0994570 | 0.911829 | 3.901605e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994570 | MtrunA17_Chr6g0478581 | 93.473 | 429 | 17 | 1 | 1 | 418 | 1 | 429 | 0.0 | 804 |
| Msa0994570 | MtrunA17_Chr1g0161031 | 29.048 | 420 | 177 | 17 | 1 | 383 | 1 | 336 | 4.27e-23 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994570 | AT3G17860.1 | 37.037 | 405 | 157 | 18 | 1 | 380 | 1 | 332 | 1.11e-43 | 156 |
| Msa0994570 | AT3G17860.2 | 36.022 | 372 | 141 | 17 | 34 | 380 | 20 | 319 | 1.77e-33 | 128 |
| Msa0994570 | AT3G17860.3 | 35.849 | 371 | 141 | 17 | 35 | 380 | 1 | 299 | 4.97e-33 | 127 |
| Msa0994570 | AT3G17860.4 | 35.849 | 371 | 141 | 17 | 35 | 380 | 1 | 299 | 4.97e-33 | 127 |
| Msa0994570 | AT1G48500.1 | 31.378 | 392 | 165 | 20 | 1 | 385 | 1 | 295 | 2.50e-24 | 102 |
| Msa0994570 | AT1G48500.2 | 31.759 | 381 | 141 | 18 | 1 | 367 | 1 | 276 | 3.60e-23 | 99.0 |
| Msa0994570 | AT1G48500.3 | 33.508 | 191 | 70 | 9 | 35 | 213 | 2 | 147 | 1.94e-12 | 67.4 |
Find 97 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATACATGTTCTTCTTAA+AGG | 0.090775 | 6_4:-69669473 | None:intergenic |
| TGTTCTTCTTAAAGGCAAAT+TGG | 0.268291 | 6_4:-69669465 | None:intergenic |
| CAATCTAATCATGTTATTAC+TGG | 0.306462 | 6_4:+69667647 | Msa0994570:CDS |
| GTTTCAAACTCACAAACTTT+TGG | 0.315622 | 6_4:+69667689 | Msa0994570:CDS |
| TTTGATGCAGTTAGGAGTTC+AGG | 0.316880 | 6_4:+69666579 | Msa0994570:intron |
| GTCTAATCAGAAATCATTCT+TGG | 0.326422 | 6_4:+69666752 | Msa0994570:CDS |
| AATCTCTATTCCTTCCAAAA+AGG | 0.344054 | 6_4:+69668318 | Msa0994570:CDS |
| GTTGGAAGCATCTTCTTTCA+TGG | 0.359919 | 6_4:-69663751 | None:intergenic |
| GCTTGGCAATGGTGAGAGAT+AGG | 0.360283 | 6_4:-69668362 | None:intergenic |
| AGTTTCTCCATTGATTTCTC+TGG | 0.361158 | 6_4:+69669422 | Msa0994570:CDS |
| TACTGTACCACCATAAAATA+TGG | 0.366528 | 6_4:-69668059 | None:intergenic |
| CCTGGTTGAATCACATTTGT+AGG | 0.375793 | 6_4:-69668679 | None:intergenic |
| GTCACAATCATAAGAACTTT+AGG | 0.381397 | 6_4:+69668448 | Msa0994570:CDS |
| GTCACAATAATAAGATCTTT+AGG | 0.396082 | 6_4:+69668592 | Msa0994570:CDS |
| AGGTGTAGTACCATTGGATT+TGG | 0.407015 | 6_4:-69668026 | None:intergenic |
| AAATGCCCCTACCAACCATT+TGG | 0.408061 | 6_4:+69668621 | Msa0994570:CDS |
| TCTGATCCAGTGCTGCATTC+AGG | 0.408286 | 6_4:-69669392 | None:intergenic |
| CCATCCAAAGGTTCCATAGT+TGG | 0.409577 | 6_4:+69667746 | Msa0994570:CDS |
| TGAGAGGACTTTGCAATTGA+AGG | 0.412113 | 6_4:-69668472 | None:intergenic |
| ATTGCTACTTGACCCTCCCT+TGG | 0.417950 | 6_4:-69668563 | None:intergenic |
| AAGTGTTTGGTTGTGGTGAA+TGG | 0.423093 | 6_4:-69663582 | None:intergenic |
| AGAGCCAACTATGGAACCTT+TGG | 0.428876 | 6_4:-69667750 | None:intergenic |
| TAGTTGGCTCTACTGACTTA+AGG | 0.429024 | 6_4:+69667762 | Msa0994570:CDS |
| CAGTAATAACATGATTAGAT+TGG | 0.431253 | 6_4:-69667646 | None:intergenic |
| CCTATTGTTGCTACTTCTGT+AGG | 0.433479 | 6_4:+69668649 | Msa0994570:CDS |
| CAATTCTTTAATTTGATCAC+TGG | 0.434476 | 6_4:+69669535 | Msa0994570:three_prime_UTR |
| TTGGATGGAAGAACAGATAA+AGG | 0.437228 | 6_4:-69667731 | None:intergenic |
| CCTACAGAAGTAGCAACAAT+AGG | 0.446555 | 6_4:-69668649 | None:intergenic |
| GAAGTCATTGGGAGAGAACT+TGG | 0.446941 | 6_4:-69668523 | None:intergenic |
| GAACTTGCATGAGAAGTCAT+TGG | 0.447319 | 6_4:-69668535 | None:intergenic |
| TTGCTACTTGATCCTCCCCT+TGG | 0.449675 | 6_4:-69668418 | None:intergenic |
| GCCTTTAAGAAGAACATGTA+TGG | 0.452229 | 6_4:+69669472 | Msa0994570:CDS |
| CGCGAAAAGCATCGCTGACT+CGG | 0.452418 | 6_4:+69668989 | Msa0994570:CDS |
| GCACTTGCATGAGAGGTCAT+TGG | 0.457131 | 6_4:-69668391 | None:intergenic |
| GAGGTCATTGGAAGAGGGCT+TGG | 0.466655 | 6_4:-69668379 | None:intergenic |
| TAAAATATGGTCAACTGAGC+AGG | 0.468648 | 6_4:-69668046 | None:intergenic |
| TTGCTACTTGACCCTCCCTT+GGG | 0.470974 | 6_4:-69668562 | None:intergenic |
| ACAGAGAAAAGTGAAGTGTT+TGG | 0.471703 | 6_4:-69663595 | None:intergenic |
| ATGGATCCAGTAGCTTCATC+TGG | 0.480372 | 6_4:+69666696 | Msa0994570:CDS |
| TAAGTCAGTAGAGCCAACTA+TGG | 0.481454 | 6_4:-69667759 | None:intergenic |
| AGGAATTCTCTTTCCATATG+TGG | 0.481576 | 6_4:-69663696 | None:intergenic |
| ATCATGTTACTAGCTGGAAA+TGG | 0.485043 | 6_4:+69668277 | Msa0994570:CDS |
| AACTTGCATGAGAAGTCATT+GGG | 0.486290 | 6_4:-69668534 | None:intergenic |
| ATATATCCAGATGAAGCTAC+TGG | 0.486559 | 6_4:-69666702 | None:intergenic |
| AGAATAATACTCATGAAGAT+AGG | 0.490063 | 6_4:+69666658 | Msa0994570:CDS |
| TTCTTGAATGACATGAATTG+AGG | 0.493289 | 6_4:-69666639 | None:intergenic |
| CTGAGCAGGTGTAGTACCAT+TGG | 0.495191 | 6_4:-69668032 | None:intergenic |
| GAGATTCCAAATGGTTGGTA+GGG | 0.495452 | 6_4:-69668627 | None:intergenic |
| GCATGAGAGGTCATTGGAAG+AGG | 0.495990 | 6_4:-69668385 | None:intergenic |
| ATCATTCTTGGGTGTGACAC+AGG | 0.504017 | 6_4:+69666764 | Msa0994570:CDS |
| AACTTGGCAAAGGTGAGAGA+TGG | 0.504464 | 6_4:-69668507 | None:intergenic |
| TCTAATCAGAAATCATTCTT+GGG | 0.505529 | 6_4:+69666753 | Msa0994570:CDS |
| AAGGCTATCATGTTACTAGC+TGG | 0.511104 | 6_4:+69668271 | Msa0994570:CDS |
| CAACAATAGGAGATTCCAAA+TGG | 0.511822 | 6_4:-69668636 | None:intergenic |
| TAGGTCAAGAAACAGTGTTA+TGG | 0.516069 | 6_4:+69666677 | Msa0994570:CDS |
| AACAGATAAAGGTGTGGCAG+AGG | 0.516274 | 6_4:-69667720 | None:intergenic |
| TCATGCAAGTTCTTATCCCA+AGG | 0.526316 | 6_4:+69668546 | Msa0994570:CDS |
| TGGTTGAGCACTTGCATGAG+AGG | 0.528179 | 6_4:-69668398 | None:intergenic |
| CTTCTTAAAGGCAAATTGGT+GGG | 0.529876 | 6_4:-69669461 | None:intergenic |
| GGAGATTCCAAATGGTTGGT+AGG | 0.530064 | 6_4:-69668628 | None:intergenic |
| TTATCTGTTCTTCCATCCAA+AGG | 0.530505 | 6_4:+69667734 | Msa0994570:CDS |
| TCTTCTTTCATGGTAGTCCA+TGG | 0.530904 | 6_4:-69663741 | None:intergenic |
| AAAGCAAGAGAGTAGAAGAA+AGG | 0.533416 | 6_4:-69663550 | None:intergenic |
| AAATCACCTGAATGCAGCAC+TGG | 0.539481 | 6_4:+69669386 | Msa0994570:CDS |
| ACTTGGCAAAGGTGAGAGAT+GGG | 0.542203 | 6_4:-69668506 | None:intergenic |
| TCATGCAAGTGCTCAACCAA+GGG | 0.544918 | 6_4:+69668402 | Msa0994570:CDS |
| CTTGGCAATGGTGAGAGATA+GGG | 0.546183 | 6_4:-69668361 | None:intergenic |
| ACTTGAACCAGAGAAATCAA+TGG | 0.546674 | 6_4:-69669429 | None:intergenic |
| TGGTTGGTAGGGGCATTTGA+AGG | 0.547908 | 6_4:-69668616 | None:intergenic |
| AAAAGTGAAGTGTTTGGTTG+TGG | 0.556120 | 6_4:-69663589 | None:intergenic |
| TCTTCTTAAAGGCAAATTGG+TGG | 0.560082 | 6_4:-69669462 | None:intergenic |
| AATAGGAGATTCCAAATGGT+TGG | 0.560500 | 6_4:-69668632 | None:intergenic |
| CTCATGCAAGTGCTCAACCA+AGG | 0.562068 | 6_4:+69668401 | Msa0994570:CDS |
| CATGAGAGGTCATTGGAAGA+GGG | 0.576369 | 6_4:-69668384 | None:intergenic |
| TTTGCATCAGAACTTTGCAT+AGG | 0.576624 | 6_4:-69667581 | None:intergenic |
| TGAATGACATGAATTGAGGA+AGG | 0.578633 | 6_4:-69666635 | None:intergenic |
| ATTGGAAGAGGGCTTGGCAA+TGG | 0.579330 | 6_4:-69668373 | None:intergenic |
| CATATGGAAAGAGAATTCCT+TGG | 0.590006 | 6_4:+69663699 | Msa0994570:exon |
| CTTAAAGGCAAATTGGTGGG+TGG | 0.595542 | 6_4:-69669458 | None:intergenic |
| CCTACAAATGTGATTCAACC+AGG | 0.596560 | 6_4:+69668679 | Msa0994570:CDS |
| CCAACTATGGAACCTTTGGA+TGG | 0.596705 | 6_4:-69667746 | None:intergenic |
| AGATTCCAAATGGTTGGTAG+GGG | 0.605896 | 6_4:-69668626 | None:intergenic |
| CATGCAAGTTCTTATCCCAA+GGG | 0.608931 | 6_4:+69668547 | Msa0994570:CDS |
| AGGAATTGTTCCAAATCCAA+TGG | 0.614409 | 6_4:+69668016 | Msa0994570:CDS |
| ATGGGATAGGTCATTGTGAG+AGG | 0.619583 | 6_4:-69668488 | None:intergenic |
| AAGCAAGTAGAAAACAAGCA+TGG | 0.620391 | 6_4:+69667545 | Msa0994570:CDS |
| GCAAAGGTGAGAGATGGGAT+AGG | 0.630123 | 6_4:-69668501 | None:intergenic |
| GCAAGTTCTTATCCCAAGGG+AGG | 0.631848 | 6_4:+69668550 | Msa0994570:CDS |
| TGTTATTACTGGAATCAACA+TGG | 0.635983 | 6_4:+69667658 | Msa0994570:CDS |
| CAAGTTCTTATCCCAAGGGA+GGG | 0.640245 | 6_4:+69668551 | Msa0994570:CDS |
| ATTGGGAGAGAACTTGGCAA+AGG | 0.651165 | 6_4:-69668517 | None:intergenic |
| GCAAGTGCTCAACCAAGGGG+AGG | 0.667306 | 6_4:+69668406 | Msa0994570:CDS |
| TTAGGAGTTCAGGAATGCAG+TGG | 0.686957 | 6_4:+69666589 | Msa0994570:CDS |
| GCAATGGTGAGAGATAGGGT+TGG | 0.692673 | 6_4:-69668357 | None:intergenic |
| TCCAACAAACCAAAAGACCA+AGG | 0.694197 | 6_4:+69663768 | Msa0994570:CDS |
| CATGCAAGTGCTCAACCAAG+GGG | 0.695373 | 6_4:+69668403 | Msa0994570:CDS |
| TGGAAGAACAGATAAAGGTG+TGG | 0.695623 | 6_4:-69667726 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGAAAAAAAAAAAAAAAAAA+AGG | - | chr6_4:69663826-69663845 | None:intergenic | 10.0% |
| !! | TATCATTAAATTAACAAAAA+CGG | + | chr6_4:69663906-69663925 | Msa0994570:intron | 10.0% |
| !! | ATTTCTCTAATAATAATATA+AGG | + | chr6_4:69664258-69664277 | Msa0994570:intron | 10.0% |
| !!! | ATAAATGCTTATATTTTTTT+TGG | + | chr6_4:69665293-69665312 | Msa0994570:intron | 10.0% |
| !! | TAATTATATAATATACTAGA+TGG | - | chr6_4:69665776-69665795 | None:intergenic | 10.0% |
| !! | ATAATTATATTATATGATGA+TGG | + | chr6_4:69665789-69665808 | Msa0994570:intron | 10.0% |
| !!! | ATATAATCTTTTAAAAAACA+TGG | + | chr6_4:69666179-69666198 | Msa0994570:intron | 10.0% |
| !!! | TTTATTTATTTATTTTGATG+GGG | + | chr6_4:69666302-69666321 | Msa0994570:intron | 10.0% |
| !!! | TTATTTTTTAATGTTGATTT+AGG | + | chr6_4:69666531-69666550 | Msa0994570:intron | 10.0% |
| !!! | AATTATTTTGATATATACAA+TGG | - | chr6_4:69666840-69666859 | None:intergenic | 10.0% |
| !!! | TAACTTGTAGATAATAATAA+AGG | + | chr6_4:69664079-69664098 | Msa0994570:intron | 15.0% |
| !! | TGTTTATAAGATAAAATTTC+TGG | - | chr6_4:69664150-69664169 | None:intergenic | 15.0% |
| !!! | TTATATTTTTTTTGGTTAGA+AGG | + | chr6_4:69665301-69665320 | Msa0994570:intron | 15.0% |
| !!! | GTTTTTAAATATAAATATCG+TGG | + | chr6_4:69665472-69665491 | Msa0994570:intron | 15.0% |
| !! | CTTAGATTTAATATTAAACA+TGG | - | chr6_4:69665584-69665603 | None:intergenic | 15.0% |
| !! | CATGTTTAATATTAAATCTA+AGG | + | chr6_4:69665582-69665601 | Msa0994570:intron | 15.0% |
| !!! | AAATTGTTATTTATTTCTCA+AGG | - | chr6_4:69665639-69665658 | None:intergenic | 15.0% |
| !! | ATAAAATATTCATATACGAA+TGG | + | chr6_4:69665697-69665716 | Msa0994570:intron | 15.0% |
| !!! | TTATTAGTTTATTGTTATCT+AGG | - | chr6_4:69666117-69666136 | None:intergenic | 15.0% |
| !!! | TATATATTGAGAAACAATTT+TGG | + | chr6_4:69666963-69666982 | Msa0994570:intron | 15.0% |
| !!! | AGAATTTTTTTGTTTTCTAT+AGG | + | chr6_4:69667990-69668009 | Msa0994570:intron | 15.0% |
| !!! | TATAATGAAATTATCCTTTT+TGG | - | chr6_4:69668335-69668354 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTGTACTTACTTA+GGG | + | chr6_4:69669331-69669350 | Msa0994570:intron | 15.0% |
| !!! | TTATAGTTTTATATCATGCA+TGG | + | chr6_4:69663986-69664005 | Msa0994570:intron | 20.0% |
| !!! | TATAGTTTTATATCATGCAT+GGG | + | chr6_4:69663987-69664006 | Msa0994570:intron | 20.0% |
| !!! | TTTTGAACTTATCCATTAAA+GGG | - | chr6_4:69664339-69664358 | None:intergenic | 20.0% |
| !!! | TTTTTGAACTTATCCATTAA+AGG | - | chr6_4:69664340-69664359 | None:intergenic | 20.0% |
| !! | TTAATTCAATTATGTAGCAT+AGG | - | chr6_4:69664441-69664460 | None:intergenic | 20.0% |
| !!! | AAAATTTTATATTAGCACAC+TGG | + | chr6_4:69664489-69664508 | Msa0994570:intron | 20.0% |
| !!! | TTTTTTCTTTTTGATGCAAT+GGG | - | chr6_4:69664697-69664716 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTTTTGATGCAA+TGG | - | chr6_4:69664698-69664717 | None:intergenic | 20.0% |
| !!! | TTATTTCCTTTTTATCGATT+AGG | + | chr6_4:69664886-69664905 | Msa0994570:intron | 20.0% |
| !!! | AAATGAAATGGTTTTCTTTT+AGG | - | chr6_4:69665152-69665171 | None:intergenic | 20.0% |
| !!! | ATATATTTTATTGCATAACG+TGG | + | chr6_4:69665387-69665406 | Msa0994570:intron | 20.0% |
| !! | GAAGCATAGTATTATTTAAT+GGG | - | chr6_4:69666016-69666035 | None:intergenic | 20.0% |
| !! | TGAAGCATAGTATTATTTAA+TGG | - | chr6_4:69666017-69666036 | None:intergenic | 20.0% |
| !! | AAATAATACTATGCTTCATA+AGG | + | chr6_4:69666019-69666038 | Msa0994570:intron | 20.0% |
| !! | AAACTAATAACAAAGTAACA+AGG | + | chr6_4:69666127-69666146 | Msa0994570:intron | 20.0% |
| !!! | AAACTTGTTATTTCAAAGAT+GGG | + | chr6_4:69666505-69666524 | Msa0994570:intron | 20.0% |
| !!! | AAAATTGATTTTGACCTATT+TGG | - | chr6_4:69667208-69667227 | None:intergenic | 20.0% |
| !! | TCAAAGTAAAATCTAGTATA+TGG | - | chr6_4:69667274-69667293 | None:intergenic | 20.0% |
| !!! | TATATCTTATAATTTGTGGA+AGG | + | chr6_4:69667440-69667459 | Msa0994570:intron | 20.0% |
| !!! | TACTTCTTTTGATATTTTGT+AGG | + | chr6_4:69667508-69667527 | Msa0994570:intron | 20.0% |
| !!! | TGATATTTTGTAGGAAAATT+TGG | + | chr6_4:69667517-69667536 | Msa0994570:intron | 20.0% |
| !! | AAATTTGTGATATGATATTG+TGG | + | chr6_4:69667945-69667964 | Msa0994570:intron | 20.0% |
| !! | AAAAGATAAATATACCAGAT+AGG | - | chr6_4:69668718-69668737 | None:intergenic | 20.0% |
| !!! | TTCAGCATTTGTTATATTTA+TGG | + | chr6_4:69668776-69668795 | Msa0994570:intron | 20.0% |
| !!! | CATTTTTTTTGTACTTACTT+AGG | + | chr6_4:69669330-69669349 | Msa0994570:intron | 20.0% |
| !! | AGTAAAATACTACAAAAAAG+TGG | - | chr6_4:69669577-69669596 | None:intergenic | 20.0% |
| ! | GAAAATAGAAAAAGATACCT+TGG | - | chr6_4:69663788-69663807 | None:intergenic | 25.0% |
| ! | AAAAAAAAGGAAAGCAGAAA+AGG | - | chr6_4:69663813-69663832 | None:intergenic | 25.0% |
| !!! | ATAGTTTTATATCATGCATG+GGG | + | chr6_4:69663988-69664007 | Msa0994570:intron | 25.0% |
| ! | AATAATATAAGGAAGAACCA+TGG | + | chr6_4:69664269-69664288 | Msa0994570:intron | 25.0% |
| ! | GAAAAAAGCAAAAGAACATA+AGG | - | chr6_4:69664316-69664335 | None:intergenic | 25.0% |
| ! | TTTGAACTTATCCATTAAAG+GGG | - | chr6_4:69664338-69664357 | None:intergenic | 25.0% |
| ! | GGATAAGTTCAAAAATTCTA+AGG | + | chr6_4:69664345-69664364 | Msa0994570:intron | 25.0% |
| ! | AATTCAAACTTATATCCACA+TGG | - | chr6_4:69664665-69664684 | None:intergenic | 25.0% |
| !! | AAAAAAGTGTGTTGTGATAT+AGG | + | chr6_4:69664712-69664731 | Msa0994570:intron | 25.0% |
| !! | AAAAAGTGTGTTGTGATATA+GGG | + | chr6_4:69664713-69664732 | Msa0994570:intron | 25.0% |
| ! | GGTCAAAATAAAATAGATGT+GGG | + | chr6_4:69664734-69664753 | Msa0994570:intron | 25.0% |
| ! | CATAAACCTAATCGATAAAA+AGG | - | chr6_4:69664895-69664914 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGGTTAGAAGGT+TGG | + | chr6_4:69665305-69665324 | Msa0994570:intron | 25.0% |
| ! | CATCAAAATCAAGAAAATGA+AGG | - | chr6_4:69665414-69665433 | None:intergenic | 25.0% |
| !! | ATTAAATCTAAGGTCTAACA+TGG | + | chr6_4:69665592-69665611 | Msa0994570:intron | 25.0% |
| !! | TTAAATCTAAGGTCTAACAT+GGG | + | chr6_4:69665593-69665612 | Msa0994570:intron | 25.0% |
| !! | TTTTTATGTTAATGACAAGC+TGG | + | chr6_4:69665658-69665677 | Msa0994570:intron | 25.0% |
| !!! | TGATGGACTATGATTAAATA+AGG | + | chr6_4:69665806-69665825 | Msa0994570:intron | 25.0% |
| !!! | GATGGACTATGATTAAATAA+GGG | + | chr6_4:69665807-69665826 | Msa0994570:intron | 25.0% |
| !! | TTTTAACAAGTCACATCTTA+AGG | - | chr6_4:69665963-69665982 | None:intergenic | 25.0% |
| ! | ATTGTTATCTAGGTAATAAC+TGG | - | chr6_4:69666107-69666126 | None:intergenic | 25.0% |
| !!! | GCATCTTCTAAATAGTTTTA+TGG | + | chr6_4:69666236-69666255 | Msa0994570:intron | 25.0% |
| !!! | CATCTTTGAAATAACAAGTT+TGG | - | chr6_4:69666506-69666525 | None:intergenic | 25.0% |
| !!! | CAAACTTGTTATTTCAAAGA+TGG | + | chr6_4:69666504-69666523 | Msa0994570:intron | 25.0% |
| ! | TTCTTAAATTTGATGCAGTT+AGG | + | chr6_4:69666571-69666590 | Msa0994570:intron | 25.0% |
| ! | AGAATAATACTCATGAAGAT+AGG | + | chr6_4:69666658-69666677 | Msa0994570:CDS | 25.0% |
| ! | TCTAATCAGAAATCATTCTT+GGG | + | chr6_4:69666753-69666772 | Msa0994570:CDS | 25.0% |
| !!! | GACCAAATTTTAATGATGTT+TGG | + | chr6_4:69666936-69666955 | Msa0994570:intron | 25.0% |
| ! | GACCAAACATCATTAAAATT+TGG | - | chr6_4:69666941-69666960 | None:intergenic | 25.0% |
| ! | TGGTTTCAGATTCAATTATT+AGG | + | chr6_4:69666983-69667002 | Msa0994570:intron | 25.0% |
| ! | AGTCTAAAAATCAATTGTAG+AGG | + | chr6_4:69667130-69667149 | Msa0994570:intron | 25.0% |
| ! | AGTAAAATCTAGTATATGGT+TGG | - | chr6_4:69667270-69667289 | None:intergenic | 25.0% |
| ! | CAGTAATAACATGATTAGAT+TGG | - | chr6_4:69667649-69667668 | None:intergenic | 25.0% |
| ! | CAATCTAATCATGTTATTAC+TGG | + | chr6_4:69667647-69667666 | Msa0994570:CDS | 25.0% |
| !!! | ATGTGTTTTATTAGAAATGC+GGG | - | chr6_4:69667865-69667884 | None:intergenic | 25.0% |
| !!! | CATGTGTTTTATTAGAAATG+CGG | - | chr6_4:69667866-69667885 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTTCTATAGGAGT+AGG | + | chr6_4:69667996-69668015 | Msa0994570:intron | 25.0% |
| ! | ACGCTATTAAGATAAGTTTA+CGG | - | chr6_4:69668128-69668147 | None:intergenic | 25.0% |
| !!! | GATTTTTATTTTCCATGACT+AGG | + | chr6_4:69668246-69668265 | Msa0994570:intron | 25.0% |
| !! | ATGAAATTATCCTTTTTGGA+AGG | - | chr6_4:69668331-69668350 | None:intergenic | 25.0% |
| ! | GTCACAATAATAAGATCTTT+AGG | + | chr6_4:69668592-69668611 | Msa0994570:CDS | 25.0% |
| !!! | AGTTTTGTTGTGTTTATAGT+TGG | + | chr6_4:69668955-69668974 | Msa0994570:intron | 25.0% |
| !! | TTTTCTATACCTAATATCCA+AGG | - | chr6_4:69669083-69669102 | None:intergenic | 25.0% |
| ! | TTATATAAGTTCATTTGCGT+TGG | - | chr6_4:69669189-69669208 | None:intergenic | 25.0% |
| ! | ATTAAACTCAATGACCAAAT+TGG | + | chr6_4:69669241-69669260 | Msa0994570:intron | 25.0% |
| !!! | GATTTTTTGCTCATATAGTA+TGG | - | chr6_4:69669371-69669390 | None:intergenic | 25.0% |
| !!! | CAATTCTTTAATTTGATCAC+TGG | + | chr6_4:69669535-69669554 | Msa0994570:three_prime_UTR | 25.0% |
| !!! | TCTGATTTTTTCACCACATA+TGG | + | chr6_4:69663683-69663702 | Msa0994570:exon | 30.0% |
| !! | AAAAAGATACCTTGGTCTTT+TGG | - | chr6_4:69663780-69663799 | None:intergenic | 30.0% |
| TGTTGGTGCAAAATATTTCA+TGG | - | chr6_4:69663847-69663866 | None:intergenic | 30.0% | |
| AAATCTTAACCAATGCTCTT+AGG | - | chr6_4:69664121-69664140 | None:intergenic | 30.0% | |
| GAAATACTAATACGTGTCTT+TGG | - | chr6_4:69664243-69664262 | None:intergenic | 30.0% | |
| AAATTCATTCTTCTCTTCCA+TGG | - | chr6_4:69664289-69664308 | None:intergenic | 30.0% | |
| !!! | TTTGCTTTTTTCCCCTTTAA+TGG | + | chr6_4:69664324-69664343 | Msa0994570:intron | 30.0% |
| !! | CAAAAATTCTAAGGTTTCGT+AGG | + | chr6_4:69664354-69664373 | Msa0994570:intron | 30.0% |
| ATTCAATTATGTAGCATAGG+AGG | - | chr6_4:69664438-69664457 | None:intergenic | 30.0% | |
| ! | TAAAGTATCTATCTATCACG+TGG | + | chr6_4:69664466-69664485 | Msa0994570:intron | 30.0% |
| TTTGAACCATAAGTATGACA+TGG | - | chr6_4:69664521-69664540 | None:intergenic | 30.0% | |
| TGTTTGATGTGTGGTATTTA+TGG | + | chr6_4:69664546-69664565 | Msa0994570:intron | 30.0% | |
| ! | TAGTTGATATATAGTCCATG+TGG | + | chr6_4:69664647-69664666 | Msa0994570:intron | 30.0% |
| GGGTCAAAATAAAATAGATG+TGG | + | chr6_4:69664733-69664752 | Msa0994570:intron | 30.0% | |
| TCAGCTCATGTAAAATCTTA+AGG | + | chr6_4:69665010-69665029 | Msa0994570:intron | 30.0% | |
| !! | ACACCAACTTACTTTTATGA+AGG | + | chr6_4:69665897-69665916 | Msa0994570:intron | 30.0% |
| ACACCTTCATAAAAGTAAGT+TGG | - | chr6_4:69665903-69665922 | None:intergenic | 30.0% | |
| TTGTTAAAAAACACCACCAA+AGG | + | chr6_4:69665974-69665993 | Msa0994570:intron | 30.0% | |
| TGTTAAAAAACACCACCAAA+GGG | + | chr6_4:69665975-69665994 | Msa0994570:intron | 30.0% | |
| TTAAATTTATATGCCGTACC+TGG | + | chr6_4:69666081-69666100 | Msa0994570:intron | 30.0% | |
| !! | CTTTTAAAAAACATGGACTC+TGG | + | chr6_4:69666186-69666205 | Msa0994570:intron | 30.0% |
| TATCTTCACTGCTGAAAAAA+AGG | + | chr6_4:69666464-69666483 | Msa0994570:intron | 30.0% | |
| TTCTTGAATGACATGAATTG+AGG | - | chr6_4:69666642-69666661 | None:intergenic | 30.0% | |
| GTCTAATCAGAAATCATTCT+TGG | + | chr6_4:69666752-69666771 | Msa0994570:CDS | 30.0% | |
| CATTAAAATTTGGTCAAACG+TGG | - | chr6_4:69666931-69666950 | None:intergenic | 30.0% | |
| AGAATCAATTGTTATAACCG+TGG | - | chr6_4:69667038-69667057 | None:intergenic | 30.0% | |
| TCGATAGATTCATGTAAAAG+TGG | + | chr6_4:69667092-69667111 | Msa0994570:intron | 30.0% | |
| CGATAGATTCATGTAAAAGT+GGG | + | chr6_4:69667093-69667112 | Msa0994570:intron | 30.0% | |
| ! | ATAAGCTTTTAATGTGGGTT+AGG | - | chr6_4:69667417-69667436 | None:intergenic | 30.0% |
| !! | CTTGTTTTCTACTTGCTTTA+TGG | - | chr6_4:69667543-69667562 | None:intergenic | 30.0% |
| TGTTATTACTGGAATCAACA+TGG | + | chr6_4:69667658-69667677 | Msa0994570:CDS | 30.0% | |
| ! | GTTTCAAACTCACAAACTTT+TGG | + | chr6_4:69667689-69667708 | Msa0994570:CDS | 30.0% |
| !! | TGTGTTTTATTAGAAATGCG+GGG | - | chr6_4:69667864-69667883 | None:intergenic | 30.0% |
| TACTGTACCACCATAAAATA+TGG | - | chr6_4:69668062-69668081 | None:intergenic | 30.0% | |
| AACTTATCTTAATAGCGTAG+TGG | + | chr6_4:69668130-69668149 | Msa0994570:intron | 30.0% | |
| AATCTCTATTCCTTCCAAAA+AGG | + | chr6_4:69668318-69668337 | Msa0994570:CDS | 30.0% | |
| GTCACAATCATAAGAACTTT+AGG | + | chr6_4:69668448-69668467 | Msa0994570:CDS | 30.0% | |
| ATAGGCATACTATATATACC+TGG | - | chr6_4:69668700-69668719 | None:intergenic | 30.0% | |
| GTATATATAGTATGCCTATC+TGG | + | chr6_4:69668701-69668720 | Msa0994570:intron | 30.0% | |
| GCTTTACATAAACTAGAAGA+AGG | - | chr6_4:69668918-69668937 | None:intergenic | 30.0% | |
| !! | CTTAATATGTTTTTGAGCCT+TGG | + | chr6_4:69669063-69669082 | Msa0994570:intron | 30.0% |
| TGCTATTATGTTAGCCAATT+TGG | - | chr6_4:69669258-69669277 | None:intergenic | 30.0% | |
| ! | TTTTGTGATGTGATTTTCTG+AGG | + | chr6_4:69669301-69669320 | Msa0994570:intron | 30.0% |
| TGTTCTTCTTAAAGGCAAAT+TGG | - | chr6_4:69669468-69669487 | None:intergenic | 30.0% | |
| TCCATACATGTTCTTCTTAA+AGG | - | chr6_4:69669476-69669495 | None:intergenic | 30.0% | |
| AAAGCAAGAGAGTAGAAGAA+AGG | - | chr6_4:69663553-69663572 | None:intergenic | 35.0% | |
| ! | AAAAGTGAAGTGTTTGGTTG+TGG | - | chr6_4:69663592-69663611 | None:intergenic | 35.0% |
| ! | ACAGAGAAAAGTGAAGTGTT+TGG | - | chr6_4:69663598-69663617 | None:intergenic | 35.0% |
| AGGAATTCTCTTTCCATATG+TGG | - | chr6_4:69663699-69663718 | None:intergenic | 35.0% | |
| CATATGGAAAGAGAATTCCT+TGG | + | chr6_4:69663699-69663718 | Msa0994570:exon | 35.0% | |
| !!! | TATTTTTGGAACTGAAGCCA+AGG | - | chr6_4:69663719-69663738 | None:intergenic | 35.0% |
| TCAGTTCCAAAAATAGTCCA+TGG | + | chr6_4:69663724-69663743 | Msa0994570:CDS | 35.0% | |
| TTTCACATCCCCATAACAAT+AGG | - | chr6_4:69663870-69663889 | None:intergenic | 35.0% | |
| ! | TCGTAGGAAGAACTTGTTTA+AGG | + | chr6_4:69664370-69664389 | Msa0994570:intron | 35.0% |
| ! | TTTATATTAGCACACTGGCT+AGG | + | chr6_4:69664494-69664513 | Msa0994570:intron | 35.0% |
| ! | TTATATTAGCACACTGGCTA+GGG | + | chr6_4:69664495-69664514 | Msa0994570:intron | 35.0% |
| !! | CAAAGTTGATGTTTGATGTG+TGG | + | chr6_4:69664537-69664556 | Msa0994570:intron | 35.0% |
| !! | TCAAAGTTGATGTGTGAATG+TGG | + | chr6_4:69664570-69664589 | Msa0994570:intron | 35.0% |
| ATCAACTAGCTCAAGAATTG+TGG | - | chr6_4:69664635-69664654 | None:intergenic | 35.0% | |
| TATGTTAGAAAACGTGCTCT+TGG | + | chr6_4:69665338-69665357 | Msa0994570:intron | 35.0% | |
| TAGACTCTCATTCATACATC+AGG | - | chr6_4:69665500-69665519 | None:intergenic | 35.0% | |
| ! | TTTTGTTACAAGTCACCCTT+TGG | - | chr6_4:69665993-69666012 | None:intergenic | 35.0% |
| TGAATGACATGAATTGAGGA+AGG | - | chr6_4:69666638-69666657 | None:intergenic | 35.0% | |
| TAGGTCAAGAAACAGTGTTA+TGG | + | chr6_4:69666677-69666696 | Msa0994570:CDS | 35.0% | |
| ATATATCCAGATGAAGCTAC+TGG | - | chr6_4:69666705-69666724 | None:intergenic | 35.0% | |
| AAGAACATTGAGTGCTTGTA+AGG | + | chr6_4:69666871-69666890 | Msa0994570:intron | 35.0% | |
| ! | TGAGTGCTTGTAAGGTTTTA+AGG | + | chr6_4:69666879-69666898 | Msa0994570:intron | 35.0% |
| TTAATGTGTGTTTGCTTCCA+CGG | + | chr6_4:69667018-69667037 | Msa0994570:intron | 35.0% | |
| CTACTTGAGAACATCCAAAT+AGG | + | chr6_4:69667191-69667210 | Msa0994570:intron | 35.0% | |
| AAGCAAGTAGAAAACAAGCA+TGG | + | chr6_4:69667545-69667564 | Msa0994570:CDS | 35.0% | |
| TTTGCATCAGAACTTTGCAT+AGG | - | chr6_4:69667584-69667603 | None:intergenic | 35.0% | |
| TTGGATGGAAGAACAGATAA+AGG | - | chr6_4:69667734-69667753 | None:intergenic | 35.0% | |
| TTATCTGTTCTTCCATCCAA+AGG | + | chr6_4:69667734-69667753 | Msa0994570:CDS | 35.0% | |
| TATGATATTGTGGAGCAATG+TGG | + | chr6_4:69667955-69667974 | Msa0994570:intron | 35.0% | |
| AGGAATTGTTCCAAATCCAA+TGG | + | chr6_4:69668016-69668035 | Msa0994570:CDS | 35.0% | |
| TAAAATATGGTCAACTGAGC+AGG | - | chr6_4:69668049-69668068 | None:intergenic | 35.0% | |
| ! | GCTCAGTTGACCATATTTTA+TGG | + | chr6_4:69668049-69668068 | Msa0994570:CDS | 35.0% |
| ! | CAGTTGACCATATTTTATGG+TGG | + | chr6_4:69668052-69668071 | Msa0994570:CDS | 35.0% |
| GCAAAAAAAGTTACCTTCTC+AGG | - | chr6_4:69668106-69668125 | None:intergenic | 35.0% | |
| ! | TTATTTTCTGCAATCTGCGA+TGG | + | chr6_4:69668168-69668187 | Msa0994570:intron | 35.0% |
| ! | TATTTTCCATGACTAGGCTA+AGG | + | chr6_4:69668252-69668271 | Msa0994570:intron | 35.0% |
| ATCATGTTACTAGCTGGAAA+TGG | + | chr6_4:69668277-69668296 | Msa0994570:CDS | 35.0% | |
| AACTTGCATGAGAAGTCATT+GGG | - | chr6_4:69668537-69668556 | None:intergenic | 35.0% | |
| AATAGGAGATTCCAAATGGT+TGG | - | chr6_4:69668635-69668654 | None:intergenic | 35.0% | |
| CAACAATAGGAGATTCCAAA+TGG | - | chr6_4:69668639-69668658 | None:intergenic | 35.0% | |
| CTCGACCTCTATTAATTAAC+CGG | - | chr6_4:69668814-69668833 | None:intergenic | 35.0% | |
| !! | GTTTTTGAGCCTTGGATATT+AGG | + | chr6_4:69669071-69669090 | Msa0994570:intron | 35.0% |
| !! | AGTTTCTCCATTGATTTCTC+TGG | + | chr6_4:69669422-69669441 | Msa0994570:CDS | 35.0% |
| ACTTGAACCAGAGAAATCAA+TGG | - | chr6_4:69669432-69669451 | None:intergenic | 35.0% | |
| CTTCTTAAAGGCAAATTGGT+GGG | - | chr6_4:69669464-69669483 | None:intergenic | 35.0% | |
| TCTTCTTAAAGGCAAATTGG+TGG | - | chr6_4:69669465-69669484 | None:intergenic | 35.0% | |
| ! | GCCTTTAAGAAGAACATGTA+TGG | + | chr6_4:69669472-69669491 | Msa0994570:CDS | 35.0% |
| AAGTGTTTGGTTGTGGTGAA+TGG | - | chr6_4:69663585-69663604 | None:intergenic | 40.0% | |
| !! | GGTAGTCCATGGACTATTTT+TGG | - | chr6_4:69663733-69663752 | None:intergenic | 40.0% |
| TCTTCTTTCATGGTAGTCCA+TGG | - | chr6_4:69663744-69663763 | None:intergenic | 40.0% | |
| !! | GTTGGAAGCATCTTCTTTCA+TGG | - | chr6_4:69663754-69663773 | None:intergenic | 40.0% |
| TCCAACAAACCAAAAGACCA+AGG | + | chr6_4:69663768-69663787 | Msa0994570:CDS | 40.0% | |
| !!! | ACCTTGGTCTTTTGGTTTGT+TGG | - | chr6_4:69663772-69663791 | None:intergenic | 40.0% |
| TGCACCAACACCTATTGTTA+TGG | + | chr6_4:69663857-69663876 | Msa0994570:intron | 40.0% | |
| GCACCAACACCTATTGTTAT+GGG | + | chr6_4:69663858-69663877 | Msa0994570:intron | 40.0% | |
| CACCAACACCTATTGTTATG+GGG | + | chr6_4:69663859-69663878 | Msa0994570:intron | 40.0% | |
| ATCCCCATAACAATAGGTGT+TGG | - | chr6_4:69663864-69663883 | None:intergenic | 40.0% | |
| ! | ATCAAGTGTCCTAAGAGCAT+TGG | + | chr6_4:69664109-69664128 | Msa0994570:intron | 40.0% |
| ! | AGTTGATGTGTGAATGTGGT+AGG | + | chr6_4:69664574-69664593 | Msa0994570:intron | 40.0% |
| GTTGATGTGTGAATGTGGTA+GGG | + | chr6_4:69664575-69664594 | Msa0994570:intron | 40.0% | |
| CTTGTCAGTGTGTTGTAAGA+TGG | + | chr6_4:69664606-69664625 | Msa0994570:intron | 40.0% | |
| !! | TGTGTTAGTGTTGATCAGTG+TGG | + | chr6_4:69665211-69665230 | Msa0994570:intron | 40.0% |
| TATCTAGGTAATAACTGGCC+AGG | - | chr6_4:69666102-69666121 | None:intergenic | 40.0% | |
| TGATGGGGTAGATGAAGTAT+AGG | + | chr6_4:69666317-69666336 | Msa0994570:intron | 40.0% | |
| TTTGATGCAGTTAGGAGTTC+AGG | + | chr6_4:69666579-69666598 | Msa0994570:intron | 40.0% | |
| !! | GCAGTGGTCGTTTTCAAATA+AGG | + | chr6_4:69666605-69666624 | Msa0994570:CDS | 40.0% |
| GCACTCAATGTTCTTCAACA+GGG | - | chr6_4:69666866-69666885 | None:intergenic | 40.0% | |
| AGCACTCAATGTTCTTCAAC+AGG | - | chr6_4:69666867-69666886 | None:intergenic | 40.0% | |
| AGTTTGATTCCTCCTTGAGT+GGG | + | chr6_4:69667243-69667262 | Msa0994570:intron | 40.0% | |
| TGGAAGAACAGATAAAGGTG+TGG | - | chr6_4:69667729-69667748 | None:intergenic | 40.0% | |
| TAAGTCAGTAGAGCCAACTA+TGG | - | chr6_4:69667762-69667781 | None:intergenic | 40.0% | |
| !! | TAGTTGGCTCTACTGACTTA+AGG | + | chr6_4:69667762-69667781 | Msa0994570:CDS | 40.0% |
| !! | GTTTTATTAGAAATGCGGGG+CGG | - | chr6_4:69667861-69667880 | None:intergenic | 40.0% |
| AGGTGTAGTACCATTGGATT+TGG | - | chr6_4:69668029-69668048 | None:intergenic | 40.0% | |
| AAGGCTATCATGTTACTAGC+TGG | + | chr6_4:69668271-69668290 | Msa0994570:CDS | 40.0% | |
| TGAGAGGACTTTGCAATTGA+AGG | - | chr6_4:69668475-69668494 | None:intergenic | 40.0% | |
| GAACTTGCATGAGAAGTCAT+TGG | - | chr6_4:69668538-69668557 | None:intergenic | 40.0% | |
| TCATGCAAGTTCTTATCCCA+AGG | + | chr6_4:69668546-69668565 | Msa0994570:CDS | 40.0% | |
| CATGCAAGTTCTTATCCCAA+GGG | + | chr6_4:69668547-69668566 | Msa0994570:CDS | 40.0% | |
| !! | AGATTCCAAATGGTTGGTAG+GGG | - | chr6_4:69668629-69668648 | None:intergenic | 40.0% |
| ! | GAGATTCCAAATGGTTGGTA+GGG | - | chr6_4:69668630-69668649 | None:intergenic | 40.0% |
| CCTACAGAAGTAGCAACAAT+AGG | - | chr6_4:69668652-69668671 | None:intergenic | 40.0% | |
| ! | CCTATTGTTGCTACTTCTGT+AGG | + | chr6_4:69668649-69668668 | Msa0994570:CDS | 40.0% |
| CCTGGTTGAATCACATTTGT+AGG | - | chr6_4:69668682-69668701 | None:intergenic | 40.0% | |
| CCTACAAATGTGATTCAACC+AGG | + | chr6_4:69668679-69668698 | Msa0994570:CDS | 40.0% | |
| !! | TTTTGGAGAAGCGAAAGGAA+AGG | + | chr6_4:69669013-69669032 | Msa0994570:CDS | 40.0% |
| TTGAATGTGTCACCTAGACA+CGG | + | chr6_4:69669124-69669143 | Msa0994570:intron | 40.0% | |
| CTAGGGCCATGTCATACTTA+TGG | + | chr6_4:69664512-69664531 | Msa0994570:intron | 45.0% | |
| AAAACGTGCTCTTGGTTGTC+TGG | + | chr6_4:69665346-69665365 | Msa0994570:intron | 45.0% | |
| CTAAGGTCTAACATGGGCAT+TGG | + | chr6_4:69665599-69665618 | Msa0994570:intron | 45.0% | |
| ATGACAAGCTGGTTGCAAAG+TGG | + | chr6_4:69665669-69665688 | Msa0994570:intron | 45.0% | |
| TGTTACAAGTCACCCTTTGG+TGG | - | chr6_4:69665990-69666009 | None:intergenic | 45.0% | |
| AGGTAATAACTGGCCAGGTA+CGG | - | chr6_4:69666097-69666116 | None:intergenic | 45.0% | |
| TTAGGAGTTCAGGAATGCAG+TGG | + | chr6_4:69666589-69666608 | Msa0994570:CDS | 45.0% | |
| ATGGATCCAGTAGCTTCATC+TGG | + | chr6_4:69666696-69666715 | Msa0994570:CDS | 45.0% | |
| ATCATTCTTGGGTGTGACAC+AGG | + | chr6_4:69666764-69666783 | Msa0994570:CDS | 45.0% | |
| GGTGAGACTTGAGTTTGCAA+TGG | + | chr6_4:69666900-69666919 | Msa0994570:intron | 45.0% | |
| GAGTTTGATTCCTCCTTGAG+TGG | + | chr6_4:69667242-69667261 | Msa0994570:intron | 45.0% | |
| ! | TATATGGTTGGTCCCACTCA+AGG | - | chr6_4:69667258-69667277 | None:intergenic | 45.0% |
| ! | AACAGATAAAGGTGTGGCAG+AGG | - | chr6_4:69667723-69667742 | None:intergenic | 45.0% |
| CCAACTATGGAACCTTTGGA+TGG | - | chr6_4:69667749-69667768 | None:intergenic | 45.0% | |
| CCATCCAAAGGTTCCATAGT+TGG | + | chr6_4:69667746-69667765 | Msa0994570:CDS | 45.0% | |
| AGAGCCAACTATGGAACCTT+TGG | - | chr6_4:69667753-69667772 | None:intergenic | 45.0% | |
| AATGCGGGGCGGAAAAAAAT+TGG | - | chr6_4:69667850-69667869 | None:intergenic | 45.0% | |
| TATTGTGGAGCAATGTGGAG+TGG | + | chr6_4:69667960-69667979 | Msa0994570:intron | 45.0% | |
| TGATGACATCTCTCCTGAGA+AGG | + | chr6_4:69668090-69668109 | Msa0994570:intron | 45.0% | |
| ! | TGATAGCCTTAGCCTAGTCA+TGG | - | chr6_4:69668261-69668280 | None:intergenic | 45.0% |
| CTTGGCAATGGTGAGAGATA+GGG | - | chr6_4:69668364-69668383 | None:intergenic | 45.0% | |
| CATGAGAGGTCATTGGAAGA+GGG | - | chr6_4:69668387-69668406 | None:intergenic | 45.0% | |
| TCATGCAAGTGCTCAACCAA+GGG | + | chr6_4:69668402-69668421 | Msa0994570:CDS | 45.0% | |
| ATGGGATAGGTCATTGTGAG+AGG | - | chr6_4:69668491-69668510 | None:intergenic | 45.0% | |
| ACTTGGCAAAGGTGAGAGAT+GGG | - | chr6_4:69668509-69668528 | None:intergenic | 45.0% | |
| AACTTGGCAAAGGTGAGAGA+TGG | - | chr6_4:69668510-69668529 | None:intergenic | 45.0% | |
| ATTGGGAGAGAACTTGGCAA+AGG | - | chr6_4:69668520-69668539 | None:intergenic | 45.0% | |
| GAAGTCATTGGGAGAGAACT+TGG | - | chr6_4:69668526-69668545 | None:intergenic | 45.0% | |
| CAAGTTCTTATCCCAAGGGA+GGG | + | chr6_4:69668551-69668570 | Msa0994570:CDS | 45.0% | |
| AAATGCCCCTACCAACCATT+TGG | + | chr6_4:69668621-69668640 | Msa0994570:CDS | 45.0% | |
| GGAGATTCCAAATGGTTGGT+AGG | - | chr6_4:69668631-69668650 | None:intergenic | 45.0% | |
| TTTATGGTGAAATCGCACGC+CGG | + | chr6_4:69668792-69668811 | Msa0994570:intron | 45.0% | |
| ! | GCACGCCGGTTAATTAATAG+AGG | + | chr6_4:69668806-69668825 | Msa0994570:intron | 45.0% |
| !! | TCGGTTTTTGGAGAAGCGAA+AGG | + | chr6_4:69669008-69669027 | Msa0994570:CDS | 45.0% |
| AAATCACCTGAATGCAGCAC+TGG | + | chr6_4:69669386-69669405 | Msa0994570:CDS | 45.0% | |
| CTTAAAGGCAAATTGGTGGG+TGG | - | chr6_4:69669461-69669480 | None:intergenic | 45.0% | |
| !!! | TGTTTTTTTATATATATATT+TGG | + | chr6_4:69663953-69663972 | Msa0994570:intron | 5.0% |
| !!! | GTTTTTTTATATATATATTT+GGG | + | chr6_4:69663954-69663973 | Msa0994570:intron | 5.0% |
| !! | TATATAAATATTAAATGAAA+TGG | - | chr6_4:69665164-69665183 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTATTTTGA+TGG | + | chr6_4:69666300-69666319 | Msa0994570:intron | 5.0% |
| !!! | TTTTATTTATTTATTTTGAT+GGG | + | chr6_4:69666301-69666320 | Msa0994570:intron | 5.0% |
| CTGAGCAGGTGTAGTACCAT+TGG | - | chr6_4:69668035-69668054 | None:intergenic | 50.0% | |
| GCAATGGTGAGAGATAGGGT+TGG | - | chr6_4:69668360-69668379 | None:intergenic | 50.0% | |
| GCTTGGCAATGGTGAGAGAT+AGG | - | chr6_4:69668365-69668384 | None:intergenic | 50.0% | |
| ATTGGAAGAGGGCTTGGCAA+TGG | - | chr6_4:69668376-69668395 | None:intergenic | 50.0% | |
| GCATGAGAGGTCATTGGAAG+AGG | - | chr6_4:69668388-69668407 | None:intergenic | 50.0% | |
| GCACTTGCATGAGAGGTCAT+TGG | - | chr6_4:69668394-69668413 | None:intergenic | 50.0% | |
| TGGTTGAGCACTTGCATGAG+AGG | - | chr6_4:69668401-69668420 | None:intergenic | 50.0% | |
| CTCATGCAAGTGCTCAACCA+AGG | + | chr6_4:69668401-69668420 | Msa0994570:CDS | 50.0% | |
| CATGCAAGTGCTCAACCAAG+GGG | + | chr6_4:69668403-69668422 | Msa0994570:CDS | 50.0% | |
| ! | TTGCTACTTGATCCTCCCCT+TGG | - | chr6_4:69668421-69668440 | None:intergenic | 50.0% |
| GCAAAGGTGAGAGATGGGAT+AGG | - | chr6_4:69668504-69668523 | None:intergenic | 50.0% | |
| GCAAGTTCTTATCCCAAGGG+AGG | + | chr6_4:69668550-69668569 | Msa0994570:CDS | 50.0% | |
| ! | TTGCTACTTGACCCTCCCTT+GGG | - | chr6_4:69668565-69668584 | None:intergenic | 50.0% |
| ! | ATTGCTACTTGACCCTCCCT+TGG | - | chr6_4:69668566-69668585 | None:intergenic | 50.0% |
| !! | TGGTTGGTAGGGGCATTTGA+AGG | - | chr6_4:69668619-69668638 | None:intergenic | 50.0% |
| !!! | AGCATCGCTGACTCGGTTTT+TGG | + | chr6_4:69668996-69669015 | Msa0994570:CDS | 50.0% |
| ATTGACGAGTCTCCGTGTCT+AGG | - | chr6_4:69669139-69669158 | None:intergenic | 50.0% | |
| TCTGATCCAGTGCTGCATTC+AGG | - | chr6_4:69669395-69669414 | None:intergenic | 50.0% | |
| ACGTGCTCTTGGTTGTCTGG+TGG | + | chr6_4:69665349-69665368 | Msa0994570:intron | 55.0% | |
| ! | ATGGTTGGTCCCACTCAAGG+AGG | - | chr6_4:69667255-69667274 | None:intergenic | 55.0% |
| GAGGTCATTGGAAGAGGGCT+TGG | - | chr6_4:69668382-69668401 | None:intergenic | 55.0% | |
| ! | AGCGATGCTTTTCGCGCTTG+AGG | - | chr6_4:69668985-69669004 | None:intergenic | 55.0% |
| !! | CGCGAAAAGCATCGCTGACT+CGG | + | chr6_4:69668989-69669008 | Msa0994570:CDS | 55.0% |
| GCAAGTGCTCAACCAAGGGG+AGG | + | chr6_4:69668406-69668425 | Msa0994570:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 69663439 | 69669706 | 69663439 | ID=Msa0994570;Name=Msa0994570 |
| chr6_4 | mRNA | 69663439 | 69669706 | 69663439 | ID=Msa0994570-mRNA-1;Parent=Msa0994570;Name=Msa0994570-mRNA-1;_AED=0.11;_eAED=0.11;_QI=263|0.83|0.85|1|0.66|1|7|198|418 |
| chr6_4 | exon | 69663439 | 69663789 | 69663439 | ID=Msa0994570-mRNA-1:exon:12825;Parent=Msa0994570-mRNA-1 |
| chr6_4 | exon | 69666589 | 69666785 | 69666589 | ID=Msa0994570-mRNA-1:exon:12826;Parent=Msa0994570-mRNA-1 |
| chr6_4 | exon | 69667530 | 69667783 | 69667530 | ID=Msa0994570-mRNA-1:exon:12827;Parent=Msa0994570-mRNA-1 |
| chr6_4 | exon | 69668012 | 69668078 | 69668012 | ID=Msa0994570-mRNA-1:exon:12828;Parent=Msa0994570-mRNA-1 |
| chr6_4 | exon | 69668268 | 69668700 | 69668268 | ID=Msa0994570-mRNA-1:exon:12829;Parent=Msa0994570-mRNA-1 |
| chr6_4 | exon | 69668974 | 69669034 | 69668974 | ID=Msa0994570-mRNA-1:exon:12830;Parent=Msa0994570-mRNA-1 |
| chr6_4 | exon | 69669352 | 69669706 | 69669352 | ID=Msa0994570-mRNA-1:exon:12831;Parent=Msa0994570-mRNA-1 |
| chr6_4 | five_prime_UTR | 69663439 | 69663701 | 69663439 | ID=Msa0994570-mRNA-1:five_prime_utr;Parent=Msa0994570-mRNA-1 |
| chr6_4 | CDS | 69663702 | 69663789 | 69663702 | ID=Msa0994570-mRNA-1:cds;Parent=Msa0994570-mRNA-1 |
| chr6_4 | CDS | 69666589 | 69666785 | 69666589 | ID=Msa0994570-mRNA-1:cds;Parent=Msa0994570-mRNA-1 |
| chr6_4 | CDS | 69667530 | 69667783 | 69667530 | ID=Msa0994570-mRNA-1:cds;Parent=Msa0994570-mRNA-1 |
| chr6_4 | CDS | 69668012 | 69668078 | 69668012 | ID=Msa0994570-mRNA-1:cds;Parent=Msa0994570-mRNA-1 |
| chr6_4 | CDS | 69668268 | 69668700 | 69668268 | ID=Msa0994570-mRNA-1:cds;Parent=Msa0994570-mRNA-1 |
| chr6_4 | CDS | 69668974 | 69669034 | 69668974 | ID=Msa0994570-mRNA-1:cds;Parent=Msa0994570-mRNA-1 |
| chr6_4 | CDS | 69669352 | 69669508 | 69669352 | ID=Msa0994570-mRNA-1:cds;Parent=Msa0994570-mRNA-1 |
| chr6_4 | three_prime_UTR | 69669509 | 69669706 | 69669509 | ID=Msa0994570-mRNA-1:three_prime_utr;Parent=Msa0994570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
