Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995000 | XP_003620535.2 | 80.277 | 289 | 22 | 2 | 1 | 258 | 1 | 285 | 3.41e-154 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995000 | sp|Q8VXZ0|NUD20_ARATH | 49.627 | 268 | 104 | 5 | 18 | 256 | 6 | 271 | 5.91e-77 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995000 | G7KNJ9 | 80.277 | 289 | 22 | 2 | 1 | 258 | 1 | 285 | 1.63e-154 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0899120 | Msa0995000 | 0.801386 | 9.228455e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995000 | MtrunA17_Chr6g0485011 | 80.277 | 289 | 22 | 2 | 1 | 258 | 1 | 285 | 3.14e-158 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995000 | AT5G19460.1 | 49.627 | 268 | 104 | 5 | 18 | 256 | 6 | 271 | 6.00e-78 | 240 |
| Msa0995000 | AT5G19470.2 | 61.364 | 176 | 63 | 2 | 82 | 256 | 91 | 262 | 1.38e-70 | 221 |
| Msa0995000 | AT5G19470.1 | 61.364 | 176 | 63 | 2 | 82 | 256 | 91 | 262 | 1.74e-70 | 221 |
Find 63 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGCTGCAGCTCCTTATTT+TGG | 0.177594 | 6_4:+70294057 | Msa0995000:CDS |
| CTCTTTGAAGCATAGGCTTA+TGG | 0.222290 | 6_4:+70294442 | Msa0995000:intron |
| TGTACCTTTATGCCAAAATA+AGG | 0.246886 | 6_4:-70294069 | None:intergenic |
| TGGCTATGTAATCGAGCATT+TGG | 0.324074 | 6_4:+70293845 | Msa0995000:CDS |
| CCCAATGATGGAAGCCCCTT+TGG | 0.334011 | 6_4:+70293765 | Msa0995000:CDS |
| AGAAGAGAAGGGTTTGTAAC+AGG | 0.372439 | 6_4:-70289696 | None:intergenic |
| TTGGGAGAGGAGCATATTCC+AGG | 0.372454 | 6_4:+70293864 | Msa0995000:CDS |
| ACCAAAGGGGCTTCCATCAT+TGG | 0.391806 | 6_4:-70293766 | None:intergenic |
| ATGCTTGATCATCTAGTTGC+AGG | 0.394775 | 6_4:+70294553 | Msa0995000:CDS |
| AGTGGCTATGTTGAGATAGA+TGG | 0.405918 | 6_4:+70294475 | Msa0995000:CDS |
| GTCATTGAGGGCGACGTTGT+TGG | 0.409677 | 6_4:+70293580 | Msa0995000:CDS |
| TCCTCAGCTGTCTTCAGCAA+TGG | 0.422425 | 6_4:-70293807 | None:intergenic |
| GGGAAGAGTGTGGTTGTTGA+TGG | 0.425783 | 6_4:-70289780 | None:intergenic |
| GGCTATGTAATCGAGCATTT+GGG | 0.440338 | 6_4:+70293846 | Msa0995000:CDS |
| CGTTCTAATGAAAAGAAAAC+GGG | 0.450446 | 6_4:-70294036 | None:intergenic |
| AGGAGCATATTCCAGGTATA+CGG | 0.452411 | 6_4:+70293871 | Msa0995000:CDS |
| CACACGAAATCCACATATCC+TGG | 0.461613 | 6_4:+70294529 | Msa0995000:CDS |
| TTTCTTCCATTTGTCATTGA+GGG | 0.468948 | 6_4:+70293568 | Msa0995000:CDS |
| TCTCAACATAGCCACTCATA+TGG | 0.469522 | 6_4:-70294468 | None:intergenic |
| AGGTTTGTTGAGCATTTAAG+AGG | 0.470542 | 6_4:+70293720 | Msa0995000:intron |
| CCAAAGGGGCTTCCATCATT+GGG | 0.472746 | 6_4:-70293765 | None:intergenic |
| AAGGAGTGTGAAGAGGAAGC+AGG | 0.473559 | 6_4:+70294846 | Msa0995000:CDS |
| GCCGCATGGAATTGATTGTC+AGG | 0.474919 | 6_4:+70294812 | Msa0995000:intron |
| TCATCTAGTTGCAGGAGGAC+TGG | 0.475914 | 6_4:+70294561 | Msa0995000:CDS |
| ACTAGATGATCAAGCATTCC+AGG | 0.480283 | 6_4:-70294547 | None:intergenic |
| ACGTTCTAATGAAAAGAAAA+CGG | 0.490303 | 6_4:-70294037 | None:intergenic |
| ACGTCGCCCTCAATGACAAA+TGG | 0.490482 | 6_4:-70293574 | None:intergenic |
| TTGTCAAATGAGGACTTCAC+AGG | 0.500036 | 6_4:-70294012 | None:intergenic |
| AATGAAACACAGTGACCAAA+GGG | 0.500047 | 6_4:-70293780 | None:intergenic |
| ATTTCTTCCATTTGTCATTG+AGG | 0.503126 | 6_4:+70293567 | Msa0995000:CDS |
| TAGATGGGCAGAAGCACCTA+TGG | 0.503368 | 6_4:+70294491 | Msa0995000:CDS |
| TTGTTGGATTCATTCACAAT+CGG | 0.508086 | 6_4:+70293596 | Msa0995000:CDS |
| AATACCTCGTTCCGTATACC+TGG | 0.509788 | 6_4:-70293882 | None:intergenic |
| ATCAAGCATTCCAGGATATG+TGG | 0.524432 | 6_4:-70294539 | None:intergenic |
| TTGTCAGGAAAACGTTGTAA+AGG | 0.528725 | 6_4:+70294827 | Msa0995000:CDS |
| GAGTGTGCACGTGCTGCCAC+TGG | 0.531569 | 6_4:-70289822 | None:intergenic |
| GTGAACTTACTTAATAGAGA+TGG | 0.532260 | 6_4:-70294880 | None:intergenic |
| TGATGGAGAGAAAGTGTGAG+AGG | 0.539269 | 6_4:-70289753 | None:intergenic |
| TTGCTACTGTTGCAGCCGCA+TGG | 0.542632 | 6_4:+70294798 | Msa0995000:intron |
| GCAGCACGTGCACACTCACA+TGG | 0.546676 | 6_4:+70289828 | Msa0995000:CDS |
| GATGGAGAGAAAGTGTGAGA+GGG | 0.553252 | 6_4:-70289752 | None:intergenic |
| GATTACATAGCCAAGCGCGC+TGG | 0.567603 | 6_4:-70293835 | None:intergenic |
| TGTGCACGTGCTGCCACTGG+TGG | 0.568995 | 6_4:-70289819 | None:intergenic |
| TTGCTTGTAGGACAAACAAT+CGG | 0.569942 | 6_4:+70293543 | Msa0995000:intron |
| CGTTGTAAAGGAGTGTGAAG+AGG | 0.577921 | 6_4:+70294839 | Msa0995000:CDS |
| TTTGTAACAGGACAAGGTAG+TGG | 0.582685 | 6_4:-70289684 | None:intergenic |
| GAAAACGGGTTTGTCAAATG+AGG | 0.582709 | 6_4:-70294022 | None:intergenic |
| CAATGAAACACAGTGACCAA+AGG | 0.586554 | 6_4:-70293781 | None:intergenic |
| GACTTCTCTTCGCTATCCAT+AGG | 0.590285 | 6_4:-70294507 | None:intergenic |
| TGTAATCGAGCATTTGGGAG+AGG | 0.600564 | 6_4:+70293851 | Msa0995000:CDS |
| GAAGGGTTTGTAACAGGACA+AGG | 0.605097 | 6_4:-70289690 | None:intergenic |
| GTGGCTATGTTGAGATAGAT+GGG | 0.621537 | 6_4:+70294476 | Msa0995000:CDS |
| TACTTAATAGAGATGGACCT+CGG | 0.645147 | 6_4:-70294873 | None:intergenic |
| GCTTATGGAGTCCATATGAG+TGG | 0.651417 | 6_4:+70294457 | Msa0995000:CDS |
| CTTGATCATCTAGTTGCAGG+AGG | 0.661487 | 6_4:+70294556 | Msa0995000:CDS |
| TCCTGACAATCAATTCCATG+CGG | 0.662338 | 6_4:-70294813 | None:intergenic |
| TGGTTGTTGATGGAAAATGA+TGG | 0.664559 | 6_4:-70289770 | None:intergenic |
| AAGAGGAAGCAGGAATTCCG+AGG | 0.665171 | 6_4:+70294856 | Msa0995000:CDS |
| TCCATTGCTGAAGACAGCTG+AGG | 0.673124 | 6_4:+70293806 | Msa0995000:CDS |
| CAGCACGTGCACACTCACAT+GGG | 0.680877 | 6_4:+70289829 | Msa0995000:CDS |
| TGTCAAATGAGGACTTCACA+GGG | 0.682552 | 6_4:-70294011 | None:intergenic |
| TATTCCAGGTATACGGAACG+AGG | 0.728323 | 6_4:+70293878 | Msa0995000:CDS |
| ATGAAACACAGTGACCAAAG+GGG | 0.740460 | 6_4:-70293779 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATCAATTTATGT+TGG | + | chr6_4:70290562-70290581 | Msa0995000:intron | 10.0% |
| !! | TATTAATCTTTATAATCAAT+TGG | + | chr6_4:70290906-70290925 | Msa0995000:intron | 10.0% |
| !!! | GATTTTTATCAATTTTTGTT+TGG | + | chr6_4:70290089-70290108 | Msa0995000:intron | 15.0% |
| !!! | TATTTTTATCAATTTCTGTT+TGG | + | chr6_4:70290245-70290264 | Msa0995000:intron | 15.0% |
| !!! | TGATTTTATAAAGTTGATTT+TGG | + | chr6_4:70290463-70290482 | Msa0995000:intron | 15.0% |
| !!! | TATCATTAGTTTTGAAATTT+GGG | + | chr6_4:70290929-70290948 | Msa0995000:intron | 15.0% |
| !!! | ATTTTAAGTTATTAACTGTA+AGG | + | chr6_4:70291208-70291227 | Msa0995000:intron | 15.0% |
| !! | TATTTCAACTCAATTTATAT+AGG | + | chr6_4:70291576-70291595 | Msa0995000:intron | 15.0% |
| !!! | ACTTTTCATTAAGATTTTTT+TGG | + | chr6_4:70293433-70293452 | Msa0995000:intron | 15.0% |
| !! | TACATACTATAAATTTAGTT+TGG | - | chr6_4:70294121-70294140 | None:intergenic | 15.0% |
| !! | AGAATTATTTGAATGTAAAG+TGG | + | chr6_4:70290032-70290051 | Msa0995000:intron | 20.0% |
| !! | TGGATATATTGAACTAAAAT+TGG | + | chr6_4:70290265-70290284 | Msa0995000:intron | 20.0% |
| !! | ACTTTATCTTCAAATCAATT+CGG | - | chr6_4:70290675-70290694 | None:intergenic | 20.0% |
| !!! | TACGAAAAAAGTGATTTTTA+TGG | + | chr6_4:70290713-70290732 | Msa0995000:intron | 20.0% |
| !!! | ACGAAAAAAGTGATTTTTAT+GGG | + | chr6_4:70290714-70290733 | Msa0995000:intron | 20.0% |
| !! | AATTCATATTATCCAAAGTT+TGG | - | chr6_4:70290754-70290773 | None:intergenic | 20.0% |
| !! | ACTTTATTGAAAAAAAGAAG+TGG | - | chr6_4:70290887-70290906 | None:intergenic | 20.0% |
| !!! | GTATCATTAGTTTTGAAATT+TGG | + | chr6_4:70290928-70290947 | Msa0995000:intron | 20.0% |
| !! | TTGTGAGTTTAATAATATAG+GGG | - | chr6_4:70291022-70291041 | None:intergenic | 20.0% |
| !! | GTTGTGAGTTTAATAATATA+GGG | - | chr6_4:70291023-70291042 | None:intergenic | 20.0% |
| !! | TGTTGTGAGTTTAATAATAT+AGG | - | chr6_4:70291024-70291043 | None:intergenic | 20.0% |
| !! | AACAAATTACAATAACCAAA+AGG | - | chr6_4:70291088-70291107 | None:intergenic | 20.0% |
| !!! | TTTTGGTTATTGTAATTTGT+TGG | + | chr6_4:70291087-70291106 | Msa0995000:intron | 20.0% |
| !!! | TTTGGTTATTGTAATTTGTT+GGG | + | chr6_4:70291088-70291107 | Msa0995000:intron | 20.0% |
| !!! | TACTCGTATTTAATTTCATA+AGG | + | chr6_4:70291828-70291847 | Msa0995000:intron | 20.0% |
| !!! | TTTAATTTCATAAGGAAGTT+AGG | + | chr6_4:70291836-70291855 | Msa0995000:intron | 20.0% |
| !! | TAGAAAATTTAGAGAGAAAA+TGG | + | chr6_4:70292468-70292487 | Msa0995000:intron | 20.0% |
| !! | TAAGATTGGATTTAATTGAT+TGG | + | chr6_4:70292863-70292882 | Msa0995000:intron | 20.0% |
| !!! | TAGTGTTAATATTTTGATGT+TGG | + | chr6_4:70293090-70293109 | Msa0995000:intron | 20.0% |
| !!! | AGTGTTAATATTTTGATGTT+GGG | + | chr6_4:70293091-70293110 | Msa0995000:intron | 20.0% |
| !! | ATTCTAAACTTGATTCAAAA+TGG | - | chr6_4:70293319-70293338 | None:intergenic | 20.0% |
| !!! | ATTAACCTCTAATAGATTTT+TGG | + | chr6_4:70293337-70293356 | Msa0995000:intron | 20.0% |
| !!! | TTTTCAAATACTTAAAGTCA+TGG | - | chr6_4:70293373-70293392 | None:intergenic | 20.0% |
| !! | AACAAGACAATCTATTTAAA+AGG | - | chr6_4:70293513-70293532 | None:intergenic | 20.0% |
| !! | TATAAGGAAAAATGAAGAAA+GGG | - | chr6_4:70293633-70293652 | None:intergenic | 20.0% |
| !! | TTATAAGGAAAAATGAAGAA+AGG | - | chr6_4:70293634-70293653 | None:intergenic | 20.0% |
| !! | GTTATTCATGAATATTTCTT+TGG | + | chr6_4:70293678-70293697 | Msa0995000:intron | 20.0% |
| !! | TTATATAGCTGCTAAAAAAA+AGG | - | chr6_4:70294223-70294242 | None:intergenic | 20.0% |
| !!! | TACTATTAAGTGTTTTCTTT+AGG | + | chr6_4:70294740-70294759 | Msa0995000:intron | 20.0% |
| !!! | ACTATTAAGTGTTTTCTTTA+GGG | + | chr6_4:70294741-70294760 | Msa0995000:intron | 20.0% |
| ! | AATGTAAAGTGGTTTATGTT+TGG | + | chr6_4:70290043-70290062 | Msa0995000:intron | 25.0% |
| !!! | TAGAAATATTAGCTTTTAGC+TGG | + | chr6_4:70290155-70290174 | Msa0995000:intron | 25.0% |
| ! | TGTGTGTGTGTAATAAATTT+GGG | + | chr6_4:70290293-70290312 | Msa0995000:intron | 25.0% |
| ! | AAAGTTCAACTTTGTAATTG+TGG | + | chr6_4:70290363-70290382 | Msa0995000:intron | 25.0% |
| !!! | GAATTGATTTGAAGATAAAG+TGG | + | chr6_4:70290674-70290693 | Msa0995000:intron | 25.0% |
| !! | GATTTTTATGGGTTTATGTT+TGG | + | chr6_4:70290725-70290744 | Msa0995000:intron | 25.0% |
| ! | TTCTCAGTCAATAAAGAAAA+GGG | - | chr6_4:70290815-70290834 | None:intergenic | 25.0% |
| ! | ATTCTCAGTCAATAAAGAAA+AGG | - | chr6_4:70290816-70290835 | None:intergenic | 25.0% |
| !!! | TTTTCTTTATTGACTGAGAA+TGG | + | chr6_4:70290815-70290834 | Msa0995000:intron | 25.0% |
| ! | TTATGCGAAAATTCACAATT+GGG | - | chr6_4:70290864-70290883 | None:intergenic | 25.0% |
| ! | ACAATGATCACTGATAAAAT+CGG | + | chr6_4:70291041-70291060 | Msa0995000:intron | 25.0% |
| !! | ATAGATTGTGTTATTGAGTT+TGG | + | chr6_4:70291147-70291166 | Msa0995000:intron | 25.0% |
| ! | AAGTTATTAACTGTAAGGTT+AGG | + | chr6_4:70291213-70291232 | Msa0995000:intron | 25.0% |
| !!! | TCTAATGTCCTAGTTTTTTT+GGG | - | chr6_4:70291325-70291344 | None:intergenic | 25.0% |
| !!! | ATCTAATGTCCTAGTTTTTT+TGG | - | chr6_4:70291326-70291345 | None:intergenic | 25.0% |
| ! | AAAAAAACTAGGACATTAGA+TGG | + | chr6_4:70291325-70291344 | Msa0995000:intron | 25.0% |
| ! | GCTACTTATATGCTAAATTA+AGG | - | chr6_4:70291462-70291481 | None:intergenic | 25.0% |
| ! | AGTTGTGTAAAACATAACTA+TGG | + | chr6_4:70291630-70291649 | Msa0995000:intron | 25.0% |
| ! | AATTGATATTTCAGGCATAT+TGG | - | chr6_4:70291672-70291691 | None:intergenic | 25.0% |
| !!! | TATGGATTCTAGTTTTTGAT+GGG | + | chr6_4:70291865-70291884 | Msa0995000:intron | 25.0% |
| !!! | ACTATTTTGACTGAGTAATT+CGG | - | chr6_4:70292139-70292158 | None:intergenic | 25.0% |
| ! | AGATATTATTAAGACACTCT+CGG | - | chr6_4:70292325-70292344 | None:intergenic | 25.0% |
| ! | CAGTTTAAATATCTTGTGAA+TGG | + | chr6_4:70292442-70292461 | Msa0995000:intron | 25.0% |
| ! | ATTGGATTTAATTGATTGGA+CGG | + | chr6_4:70292867-70292886 | Msa0995000:intron | 25.0% |
| !!! | TTACTCTTTTTTTTGCTGAT+GGG | + | chr6_4:70292917-70292936 | Msa0995000:intron | 25.0% |
| ! | AGGAGTTATTTATCATTTGA+TGG | + | chr6_4:70293065-70293084 | Msa0995000:intron | 25.0% |
| !!! | GTGTTAATATTTTGATGTTG+GGG | + | chr6_4:70293092-70293111 | Msa0995000:intron | 25.0% |
| ! | GTTAATGTGAATGATGTTAA+GGG | - | chr6_4:70293297-70293316 | None:intergenic | 25.0% |
| ! | ATTGTCCAAAAATCTATTAG+AGG | - | chr6_4:70293345-70293364 | None:intergenic | 25.0% |
| !!! | GTTAAACTTTGAAATTGTTC+AGG | + | chr6_4:70293700-70293719 | Msa0995000:intron | 25.0% |
| ! | ACGTTCTAATGAAAAGAAAA+CGG | - | chr6_4:70294040-70294059 | None:intergenic | 25.0% |
| ! | TTGTATCTTAAAGCTCTTAT+CGG | + | chr6_4:70294388-70294407 | Msa0995000:intron | 25.0% |
| !!! | TTTTATTCTCTTTGAAGCAT+AGG | + | chr6_4:70294435-70294454 | Msa0995000:intron | 25.0% |
| ! | AGAAATGTTTAACATGTCAA+GGG | - | chr6_4:70294633-70294652 | None:intergenic | 25.0% |
| ! | AAGAAATGTTTAACATGTCA+AGG | - | chr6_4:70294634-70294653 | None:intergenic | 25.0% |
| ! | AAGGATGAAATTAATATCTG+CGG | + | chr6_4:70294705-70294724 | Msa0995000:intron | 25.0% |
| ! | GCATGTGATTTTCATCATTT+TGG | - | chr6_4:70289657-70289676 | None:intergenic | 30.0% |
| AACCTTGTAGATAAGAACAA+GGG | - | chr6_4:70289904-70289923 | None:intergenic | 30.0% | |
| TAACCTTGTAGATAAGAACA+AGG | - | chr6_4:70289905-70289924 | None:intergenic | 30.0% | |
| GTGTGTGTGTGTAATAAATT+TGG | + | chr6_4:70290292-70290311 | Msa0995000:intron | 30.0% | |
| GATGTATGACATTGTATGTT+TGG | + | chr6_4:70290509-70290528 | Msa0995000:intron | 30.0% | |
| !!! | TATTAGCTTTTGTATGCGTT+TGG | + | chr6_4:70290622-70290641 | Msa0995000:intron | 30.0% |
| TGAAGATAAAGTGGTATCTT+TGG | + | chr6_4:70290683-70290702 | Msa0995000:intron | 30.0% | |
| ! | TATGTTTGGAATCCAAACTT+TGG | + | chr6_4:70290739-70290758 | Msa0995000:intron | 30.0% |
| GTTATGCGAAAATTCACAAT+TGG | - | chr6_4:70290865-70290884 | None:intergenic | 30.0% | |
| !!! | GTCTCTTAATTTTGAAGTGA+AGG | + | chr6_4:70290951-70290970 | Msa0995000:intron | 30.0% |
| !! | TTGAGTTTGGAATTGCTTTT+AGG | + | chr6_4:70291160-70291179 | Msa0995000:intron | 30.0% |
| ACATTGAGCTTTCATTCTAT+CGG | + | chr6_4:70291370-70291389 | Msa0995000:intron | 30.0% | |
| !! | GCTAGTTATTTCCCTTTTAA+CGG | + | chr6_4:70291405-70291424 | Msa0995000:intron | 30.0% |
| TAAAATCTAAACCCAAATGC+TGG | - | chr6_4:70291519-70291538 | None:intergenic | 30.0% | |
| GGGAAAGTAATTGATATTTC+AGG | - | chr6_4:70291680-70291699 | None:intergenic | 30.0% | |
| !!! | GTATGGATTCTAGTTTTTGA+TGG | + | chr6_4:70291864-70291883 | Msa0995000:intron | 30.0% |
| CTGCTAAATTGTTTCATGAA+AGG | - | chr6_4:70291911-70291930 | None:intergenic | 30.0% | |
| GTCGCTAAATAAAGACATTT+CGG | + | chr6_4:70291943-70291962 | Msa0995000:intron | 30.0% | |
| AGAAGGAGATTGTTTAAATG+AGG | + | chr6_4:70292019-70292038 | Msa0995000:intron | 30.0% | |
| !!! | CTATTTTGACTGAGTAATTC+GGG | - | chr6_4:70292138-70292157 | None:intergenic | 30.0% |
| TATGGTTACATTGAAAACGA+AGG | + | chr6_4:70292222-70292241 | Msa0995000:intron | 30.0% | |
| GATATTATTAAGACACTCTC+GGG | - | chr6_4:70292324-70292343 | None:intergenic | 30.0% | |
| !!! | AGTTTATTGCCCCATTTTTT+CGG | + | chr6_4:70292346-70292365 | Msa0995000:intron | 30.0% |
| TGTGGATTTGATCGTTAAAA+TGG | + | chr6_4:70292372-70292391 | Msa0995000:intron | 30.0% | |
| ATTTGATCGTTAAAATGGCT+CGG | + | chr6_4:70292377-70292396 | Msa0995000:intron | 30.0% | |
| !!! | TTTACTGTTTTTGTCTGTCT+TGG | + | chr6_4:70292591-70292610 | Msa0995000:intron | 30.0% |
| !!! | TTACTGTTTTTGTCTGTCTT+GGG | + | chr6_4:70292592-70292611 | Msa0995000:intron | 30.0% |
| ! | ACATCGTATAGTTTTCTTGT+CGG | + | chr6_4:70292766-70292785 | Msa0995000:intron | 30.0% |
| TTTCTAATGCAGATTTGTCT+CGG | + | chr6_4:70292800-70292819 | Msa0995000:intron | 30.0% | |
| TTGGATTTAATTGATTGGAC+GGG | + | chr6_4:70292868-70292887 | Msa0995000:intron | 30.0% | |
| !!! | GTTACTCTTTTTTTTGCTGA+TGG | + | chr6_4:70292916-70292935 | Msa0995000:intron | 30.0% |
| !!! | TATTTTGATGTTGGGGAAAT+TGG | + | chr6_4:70293099-70293118 | Msa0995000:intron | 30.0% |
| GGTTAATGTGAATGATGTTA+AGG | - | chr6_4:70293298-70293317 | None:intergenic | 30.0% | |
| TTGATTTCGAAATTGCTTGT+AGG | + | chr6_4:70293531-70293550 | Msa0995000:intron | 30.0% | |
| ATTTCTTCCATTTGTCATTG+AGG | + | chr6_4:70293567-70293586 | Msa0995000:CDS | 30.0% | |
| TTTCTTCCATTTGTCATTGA+GGG | + | chr6_4:70293568-70293587 | Msa0995000:CDS | 30.0% | |
| TTGTTGGATTCATTCACAAT+CGG | + | chr6_4:70293596-70293615 | Msa0995000:CDS | 30.0% | |
| TATGACACAAGCATCTTATA+AGG | - | chr6_4:70293649-70293668 | None:intergenic | 30.0% | |
| CATTCAATGAAAGAGAATGA+TGG | - | chr6_4:70293938-70293957 | None:intergenic | 30.0% | |
| AAAACACAGACAAGAAATGT+AGG | - | chr6_4:70293981-70294000 | None:intergenic | 30.0% | |
| CGTTCTAATGAAAAGAAAAC+GGG | - | chr6_4:70294039-70294058 | None:intergenic | 30.0% | |
| TGTACCTTTATGCCAAAATA+AGG | - | chr6_4:70294072-70294091 | None:intergenic | 30.0% | |
| CTAAAAAAAAGGTCTGAACT+TGG | - | chr6_4:70294212-70294231 | None:intergenic | 30.0% | |
| AATAGAAGACATGTAATGAG+AGG | - | chr6_4:70294303-70294322 | None:intergenic | 30.0% | |
| !! | AAGAGCTTTAAGATACAATC+TGG | - | chr6_4:70294386-70294405 | None:intergenic | 30.0% |
| TGAAATTAATATCTGCGGAT+TGG | + | chr6_4:70294710-70294729 | Msa0995000:intron | 30.0% | |
| GAAGAAGAAGAAGAAGAGAA+GGG | - | chr6_4:70289710-70289729 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAAGAGA+AGG | - | chr6_4:70289711-70289730 | None:intergenic | 35.0% | |
| ! | TGGTTGTTGATGGAAAATGA+TGG | - | chr6_4:70289773-70289792 | None:intergenic | 35.0% |
| ! | CATGTTTCTCAATCTGAAGT+TGG | + | chr6_4:70289863-70289882 | Msa0995000:intron | 35.0% |
| ACACAAAAGAGAGGTGATTA+AGG | - | chr6_4:70289974-70289993 | None:intergenic | 35.0% | |
| !!! | TGAGTGTATGCTTGGTTTTA+AGG | + | chr6_4:70290184-70290203 | Msa0995000:intron | 35.0% |
| !!! | GAGTGTATGCTTGGTTTTAA+GGG | + | chr6_4:70290185-70290204 | Msa0995000:intron | 35.0% |
| ACACAAAAGAGAGGTAAGTA+AGG | - | chr6_4:70290405-70290424 | None:intergenic | 35.0% | |
| AAACGAAACACACAAAAGAG+AGG | - | chr6_4:70290414-70290433 | None:intergenic | 35.0% | |
| ! | TCTTTTGTGTGTTTCGTTTG+CGG | + | chr6_4:70290415-70290434 | Msa0995000:intron | 35.0% |
| !! | GAAAGTGCAATTAAGCCTTT+TGG | + | chr6_4:70291070-70291089 | Msa0995000:intron | 35.0% |
| TCTCCAAGAAACGTGAAATA+TGG | + | chr6_4:70291255-70291274 | Msa0995000:intron | 35.0% | |
| ATGCCATATTTCACGTTTCT+TGG | - | chr6_4:70291261-70291280 | None:intergenic | 35.0% | |
| AAGTCCAACCCAAAAAAACT+AGG | + | chr6_4:70291314-70291333 | Msa0995000:intron | 35.0% | |
| !!! | ATGTCCTAGTTTTTTTGGGT+TGG | - | chr6_4:70291321-70291340 | None:intergenic | 35.0% |
| AAAGGGAAATAACTAGCATC+AGG | - | chr6_4:70291402-70291421 | None:intergenic | 35.0% | |
| ACTCATCTATCAGTATTCAG+TGG | + | chr6_4:70291432-70291451 | Msa0995000:intron | 35.0% | |
| TTCATAAGGAAGTTAGGCAA+TGG | + | chr6_4:70291842-70291861 | Msa0995000:intron | 35.0% | |
| GTTTAAATGAGGAGAAGACT+TGG | + | chr6_4:70292030-70292049 | Msa0995000:intron | 35.0% | |
| GAAAACGATAGTTGAGTTTG+AGG | + | chr6_4:70292100-70292119 | Msa0995000:intron | 35.0% | |
| ATAGTGTATTCTGTGTTGAG+TGG | + | chr6_4:70292154-70292173 | Msa0995000:intron | 35.0% | |
| TAGTGTATTCTGTGTTGAGT+GGG | + | chr6_4:70292155-70292174 | Msa0995000:intron | 35.0% | |
| ! | TTCGGAAATTTGAAGCTCTA+TGG | + | chr6_4:70292204-70292223 | Msa0995000:intron | 35.0% |
| !! | TGAAAACGAAGGTTCTAGAA+TGG | + | chr6_4:70292233-70292252 | Msa0995000:intron | 35.0% |
| TCAAAATAGACTCTCGACTA+AGG | + | chr6_4:70292264-70292283 | Msa0995000:intron | 35.0% | |
| ! | GGATAGTCATCTTTTTGTGT+AGG | + | chr6_4:70292285-70292304 | Msa0995000:intron | 35.0% |
| ! | TAGTCATCTTTTTGTGTAGG+TGG | + | chr6_4:70292288-70292307 | Msa0995000:intron | 35.0% |
| ! | AGTCATCTTTTTGTGTAGGT+GGG | + | chr6_4:70292289-70292308 | Msa0995000:intron | 35.0% |
| GAGAGAAAATGGCTGTTATT+TGG | + | chr6_4:70292479-70292498 | Msa0995000:intron | 35.0% | |
| TTATTTGGTACTCCAATGTG+TGG | + | chr6_4:70292494-70292513 | Msa0995000:intron | 35.0% | |
| TATTTGGTACTCCAATGTGT+GGG | + | chr6_4:70292495-70292514 | Msa0995000:intron | 35.0% | |
| ! | AGCAGTTTGATCCTTTGTTT+AGG | + | chr6_4:70292837-70292856 | Msa0995000:intron | 35.0% |
| TGGATTTAATTGATTGGACG+GGG | + | chr6_4:70292869-70292888 | Msa0995000:intron | 35.0% | |
| CAGCGTAAGTTTATTGAGAA+GGG | + | chr6_4:70292940-70292959 | Msa0995000:intron | 35.0% | |
| GTAAGTTTATTGAGAAGGGT+TGG | + | chr6_4:70292944-70292963 | Msa0995000:intron | 35.0% | |
| !!! | CGAGCTAAGAGCATTTTTTT+TGG | + | chr6_4:70293000-70293019 | Msa0995000:intron | 35.0% |
| !!! | GTTTTTTTCGCTTAGCTCAT+AGG | + | chr6_4:70293045-70293064 | Msa0995000:intron | 35.0% |
| AAAATTAACTTTGCACCTGC+AGG | - | chr6_4:70293490-70293509 | None:intergenic | 35.0% | |
| TTGCTTGTAGGACAAACAAT+CGG | + | chr6_4:70293543-70293562 | Msa0995000:intron | 35.0% | |
| !! | AGGTTTGTTGAGCATTTAAG+AGG | + | chr6_4:70293720-70293739 | Msa0995000:intron | 35.0% |
| AATGAAACACAGTGACCAAA+GGG | - | chr6_4:70293783-70293802 | None:intergenic | 35.0% | |
| ACAGACAAGAAATGTAGGTT+AGG | - | chr6_4:70293976-70293995 | None:intergenic | 35.0% | |
| !!! | AGCTCCTTATTTTGGCATAA+AGG | + | chr6_4:70294065-70294084 | Msa0995000:CDS | 35.0% |
| CTAAACTTGGACAGAGATAA+CGG | - | chr6_4:70294180-70294199 | None:intergenic | 35.0% | |
| TTGGATAGCATTGCTAAACT+TGG | - | chr6_4:70294193-70294212 | None:intergenic | 35.0% | |
| GACATGTAATGAGAGGTAAT+TGG | - | chr6_4:70294296-70294315 | None:intergenic | 35.0% | |
| GATAATGTGTAACTGCTGAA+AGG | + | chr6_4:70294686-70294705 | Msa0995000:intron | 35.0% | |
| TTGTCAGGAAAACGTTGTAA+AGG | + | chr6_4:70294827-70294846 | Msa0995000:CDS | 35.0% | |
| TACTTAATAGAGATGGACCT+CGG | - | chr6_4:70294876-70294895 | None:intergenic | 35.0% | |
| TTTGTAACAGGACAAGGTAG+TGG | - | chr6_4:70289687-70289706 | None:intergenic | 40.0% | |
| AGAAGAGAAGGGTTTGTAAC+AGG | - | chr6_4:70289699-70289718 | None:intergenic | 40.0% | |
| AAGAAAAAGAGGGAAGAGTG+TGG | - | chr6_4:70289793-70289812 | None:intergenic | 40.0% | |
| GTGGCTGAAGAAGAAAAAGA+GGG | - | chr6_4:70289803-70289822 | None:intergenic | 40.0% | |
| GACCCTTGTTCTTATCTACA+AGG | + | chr6_4:70289899-70289918 | Msa0995000:intron | 40.0% | |
| GGTTGCAAAGTTGGACTTTA+TGG | - | chr6_4:70289931-70289950 | None:intergenic | 40.0% | |
| GTAAAGAACTCACAGAACCA+CGG | - | chr6_4:70289952-70289971 | None:intergenic | 40.0% | |
| CAAACACAGACACAAAAGAG+AGG | - | chr6_4:70289983-70290002 | None:intergenic | 40.0% | |
| ! | CTCTCTTTTGTGTCTGTGTT+TGG | + | chr6_4:70289981-70290000 | Msa0995000:intron | 40.0% |
| !! | TTTGTATGCGTTTGGTTCTG+CGG | + | chr6_4:70290630-70290649 | Msa0995000:intron | 40.0% |
| ! | TGAGTGAACTCAAGTTTGCT+TGG | - | chr6_4:70291128-70291147 | None:intergenic | 40.0% |
| TCACGTTTCTTGGAGATAAG+TGG | - | chr6_4:70291251-70291270 | None:intergenic | 40.0% | |
| AACTAGGACATTAGATGGAG+AGG | + | chr6_4:70291330-70291349 | Msa0995000:intron | 40.0% | |
| GATGAGTGAAGCCGTTAAAA+GGG | - | chr6_4:70291419-70291438 | None:intergenic | 40.0% | |
| AGATGAGTGAAGCCGTTAAA+AGG | - | chr6_4:70291420-70291439 | None:intergenic | 40.0% | |
| TCAAGTTCATGTCCAGCATT+TGG | + | chr6_4:70291504-70291523 | Msa0995000:intron | 40.0% | |
| CAAGTTCATGTCCAGCATTT+GGG | + | chr6_4:70291505-70291524 | Msa0995000:intron | 40.0% | |
| AATTAGACGTGCAATCCCTT+CGG | - | chr6_4:70291708-70291727 | None:intergenic | 40.0% | |
| AAGGAAGTTAGGCAATGGTA+TGG | + | chr6_4:70291847-70291866 | Msa0995000:intron | 40.0% | |
| ATTTCGGTAGCCAACATGAT+TGG | + | chr6_4:70291959-70291978 | Msa0995000:intron | 40.0% | |
| AGCCAACATGATTGGTGAAA+CGG | + | chr6_4:70291967-70291986 | Msa0995000:intron | 40.0% | |
| !! | TTCGTCATGGCGTAGTTTTA+GGG | + | chr6_4:70292059-70292078 | Msa0995000:intron | 40.0% |
| AGTGTATTCTGTGTTGAGTG+GGG | + | chr6_4:70292156-70292175 | Msa0995000:intron | 40.0% | |
| !!! | TTATTGCCCCATTTTTTCGG+TGG | + | chr6_4:70292349-70292368 | Msa0995000:intron | 40.0% |
| ATCCACACCACCGAAAAAAT+GGG | - | chr6_4:70292359-70292378 | None:intergenic | 40.0% | |
| AATCCACACCACCGAAAAAA+TGG | - | chr6_4:70292360-70292379 | None:intergenic | 40.0% | |
| TAGCGACTGTCCTTCAAATT+GGG | + | chr6_4:70292402-70292421 | Msa0995000:intron | 40.0% | |
| TTTCCAAACAACCCACACAT+TGG | - | chr6_4:70292509-70292528 | None:intergenic | 40.0% | |
| ! | GTTCTGTTCCTGTGTAGTTT+TGG | + | chr6_4:70292624-70292643 | Msa0995000:intron | 40.0% |
| TAACAGCACCAAAACTACAC+AGG | - | chr6_4:70292635-70292654 | None:intergenic | 40.0% | |
| TGTGCTTCTTCATGTAGTTC+CGG | + | chr6_4:70292657-70292676 | Msa0995000:intron | 40.0% | |
| CTATACGATGTAACACACCA+AGG | - | chr6_4:70292757-70292776 | None:intergenic | 40.0% | |
| CAATCTTAGCGCCTAAACAA+AGG | - | chr6_4:70292851-70292870 | None:intergenic | 40.0% | |
| ! | CTTTGTTTAGGCGCTAAGAT+TGG | + | chr6_4:70292849-70292868 | Msa0995000:intron | 40.0% |
| !!! | TTTGCTTTTTTCCTTGCGCA+TGG | + | chr6_4:70292894-70292913 | Msa0995000:intron | 40.0% |
| AAAAAGAGTAACCATGCGCA+AGG | - | chr6_4:70292908-70292927 | None:intergenic | 40.0% | |
| GCAGCGTAAGTTTATTGAGA+AGG | + | chr6_4:70292939-70292958 | Msa0995000:intron | 40.0% | |
| GAAGGAAGTTCCAGATTGTA+AGG | + | chr6_4:70292974-70292993 | Msa0995000:intron | 40.0% | |
| GCTAAGCGAAAAAAACAGCT+AGG | - | chr6_4:70293041-70293060 | None:intergenic | 40.0% | |
| ! | TGGTGCATGTTGCTATCTTT+TGG | + | chr6_4:70293134-70293153 | Msa0995000:intron | 40.0% |
| ! | TCGCAAGTCTTGTAACTTTG+CGG | + | chr6_4:70293177-70293196 | Msa0995000:intron | 40.0% |
| !! | GTGTTCGTTTTTCCCAATGA+TGG | + | chr6_4:70293753-70293772 | Msa0995000:CDS | 40.0% |
| ATGAAACACAGTGACCAAAG+GGG | - | chr6_4:70293782-70293801 | None:intergenic | 40.0% | |
| CAATGAAACACAGTGACCAA+AGG | - | chr6_4:70293784-70293803 | None:intergenic | 40.0% | |
| TGGCTATGTAATCGAGCATT+TGG | + | chr6_4:70293845-70293864 | Msa0995000:CDS | 40.0% | |
| GGCTATGTAATCGAGCATTT+GGG | + | chr6_4:70293846-70293865 | Msa0995000:CDS | 40.0% | |
| ! | AGGAGCATATTCCAGGTATA+CGG | + | chr6_4:70293871-70293890 | Msa0995000:CDS | 40.0% |
| TGTCAAATGAGGACTTCACA+GGG | - | chr6_4:70294014-70294033 | None:intergenic | 40.0% | |
| TTGTCAAATGAGGACTTCAC+AGG | - | chr6_4:70294015-70294034 | None:intergenic | 40.0% | |
| ! | GAAAACGGGTTTGTCAAATG+AGG | - | chr6_4:70294025-70294044 | None:intergenic | 40.0% |
| ! | AAGCTCTTATCGGTTACAGT+TGG | + | chr6_4:70294398-70294417 | Msa0995000:intron | 40.0% |
| !! | CTCTTTGAAGCATAGGCTTA+TGG | + | chr6_4:70294442-70294461 | Msa0995000:intron | 40.0% |
| TCTCAACATAGCCACTCATA+TGG | - | chr6_4:70294471-70294490 | None:intergenic | 40.0% | |
| AGTGGCTATGTTGAGATAGA+TGG | + | chr6_4:70294475-70294494 | Msa0995000:CDS | 40.0% | |
| GTGGCTATGTTGAGATAGAT+GGG | + | chr6_4:70294476-70294495 | Msa0995000:CDS | 40.0% | |
| ATCAAGCATTCCAGGATATG+TGG | - | chr6_4:70294542-70294561 | None:intergenic | 40.0% | |
| ACTAGATGATCAAGCATTCC+AGG | - | chr6_4:70294550-70294569 | None:intergenic | 40.0% | |
| ATGCTTGATCATCTAGTTGC+AGG | + | chr6_4:70294553-70294572 | Msa0995000:CDS | 40.0% | |
| GCAGTTACACATTATCAGCA+CGG | - | chr6_4:70294682-70294701 | None:intergenic | 40.0% | |
| TCCTGACAATCAATTCCATG+CGG | - | chr6_4:70294816-70294835 | None:intergenic | 40.0% | |
| GAAGGGTTTGTAACAGGACA+AGG | - | chr6_4:70289693-70289712 | None:intergenic | 45.0% | |
| ! | GATGGAGAGAAAGTGTGAGA+GGG | - | chr6_4:70289755-70289774 | None:intergenic | 45.0% |
| ! | TGATGGAGAGAAAGTGTGAG+AGG | - | chr6_4:70289756-70289775 | None:intergenic | 45.0% |
| GGTGGCTGAAGAAGAAAAAG+AGG | - | chr6_4:70289804-70289823 | None:intergenic | 45.0% | |
| ! | TTTTCTTCTTCAGCCACCAG+TGG | + | chr6_4:70289806-70289825 | Msa0995000:CDS | 45.0% |
| AAAGTCCAACTTTGCAACCG+TGG | + | chr6_4:70289932-70289951 | Msa0995000:intron | 45.0% | |
| GGAGACAATGAGTGTATGCT+TGG | + | chr6_4:70290176-70290195 | Msa0995000:intron | 45.0% | |
| CCTCGTGAGCTTAACTCATA+AGG | - | chr6_4:70291293-70291312 | None:intergenic | 45.0% | |
| CCTTATGAGTTAAGCTCACG+AGG | + | chr6_4:70291290-70291309 | Msa0995000:intron | 45.0% | |
| AGCTTTCATTCTATCGGCAC+TGG | + | chr6_4:70291376-70291395 | Msa0995000:intron | 45.0% | |
| ATTACTTTCCCTGCTTCCGA+AGG | + | chr6_4:70291689-70291708 | Msa0995000:intron | 45.0% | |
| TTACTTTCCCTGCTTCCGAA+GGG | + | chr6_4:70291690-70291709 | Msa0995000:intron | 45.0% | |
| GTCCGTTTCACCAATCATGT+TGG | - | chr6_4:70291972-70291991 | None:intergenic | 45.0% | |
| ACATGATTGGTGAAACGGAC+AGG | + | chr6_4:70291972-70291991 | Msa0995000:intron | 45.0% | |
| ! | TAGTGTAGTGGAGTTGGAGA+AGG | + | chr6_4:70292002-70292021 | Msa0995000:intron | 45.0% |
| ! | GACTTGGTAGAAGTTCGTCA+TGG | + | chr6_4:70292046-70292065 | Msa0995000:intron | 45.0% |
| ! | GTTCGTCATGGCGTAGTTTT+AGG | + | chr6_4:70292058-70292077 | Msa0995000:intron | 45.0% |
| TATTCTGTGTTGAGTGGGGA+TGG | + | chr6_4:70292160-70292179 | Msa0995000:intron | 45.0% | |
| ! | TCTTTTTGTGTAGGTGGGTG+TGG | + | chr6_4:70292294-70292313 | Msa0995000:intron | 45.0% |
| TCCACACCACCGAAAAAATG+GGG | - | chr6_4:70292358-70292377 | None:intergenic | 45.0% | |
| GTAGCGACTGTCCTTCAAAT+TGG | + | chr6_4:70292401-70292420 | Msa0995000:intron | 45.0% | |
| AGCGACTGTCCTTCAAATTG+GGG | + | chr6_4:70292403-70292422 | Msa0995000:intron | 45.0% | |
| ! | ACTCCAATGTGTGGGTTGTT+TGG | + | chr6_4:70292503-70292522 | Msa0995000:intron | 45.0% |
| ! | CATGTAGTTCCGGTTTGAGT+CGG | + | chr6_4:70292667-70292686 | Msa0995000:intron | 45.0% |
| TTGAGTCGGACTGCTTCTAA+TGG | + | chr6_4:70292681-70292700 | Msa0995000:intron | 45.0% | |
| ! | GCTTCTAATGGTGAGAGTGT+CGG | + | chr6_4:70292693-70292712 | Msa0995000:intron | 45.0% |
| !! | CTTCTAATGGTGAGAGTGTC+GGG | + | chr6_4:70292694-70292713 | Msa0995000:intron | 45.0% |
| !! | TTCTAATGGTGAGAGTGTCG+GGG | + | chr6_4:70292695-70292714 | Msa0995000:intron | 45.0% |
| GCTCTCTCATTCTGTTTCCT+TGG | + | chr6_4:70292737-70292756 | Msa0995000:intron | 45.0% | |
| ! | AGTTTTCTTGTCGGCAGTGT+TGG | + | chr6_4:70292775-70292794 | Msa0995000:intron | 45.0% |
| TAGCTCGCATCCTTACAATC+TGG | - | chr6_4:70292987-70293006 | None:intergenic | 45.0% | |
| AGATCAACAACCCAAGCACA+AGG | - | chr6_4:70293242-70293261 | None:intergenic | 45.0% | |
| TGTAATCGAGCATTTGGGAG+AGG | + | chr6_4:70293851-70293870 | Msa0995000:CDS | 45.0% | |
| TATTCCAGGTATACGGAACG+AGG | + | chr6_4:70293878-70293897 | Msa0995000:CDS | 45.0% | |
| AATACCTCGTTCCGTATACC+TGG | - | chr6_4:70293885-70293904 | None:intergenic | 45.0% | |
| GCTTATGGAGTCCATATGAG+TGG | + | chr6_4:70294457-70294476 | Msa0995000:CDS | 45.0% | |
| GACTTCTCTTCGCTATCCAT+AGG | - | chr6_4:70294510-70294529 | None:intergenic | 45.0% | |
| CACACGAAATCCACATATCC+TGG | + | chr6_4:70294529-70294548 | Msa0995000:CDS | 45.0% | |
| CTTGATCATCTAGTTGCAGG+AGG | + | chr6_4:70294556-70294575 | Msa0995000:CDS | 45.0% | |
| ! | CGTTGTAAAGGAGTGTGAAG+AGG | + | chr6_4:70294839-70294858 | Msa0995000:CDS | 45.0% |
| ! | GGGAAGAGTGTGGTTGTTGA+TGG | - | chr6_4:70289783-70289802 | None:intergenic | 50.0% |
| CAGAACCACGGTTGCAAAGT+TGG | - | chr6_4:70289940-70289959 | None:intergenic | 50.0% | |
| ATAGGCTGTTGCAACGAACC+AGG | + | chr6_4:70291594-70291613 | Msa0995000:intron | 50.0% | |
| TAGGCTGTTGCAACGAACCA+GGG | + | chr6_4:70291595-70291614 | Msa0995000:intron | 50.0% | |
| TTGATGGGATCCGTTGTCAG+AGG | + | chr6_4:70291880-70291899 | Msa0995000:intron | 50.0% | |
| TGATGGGATCCGTTGTCAGA+GGG | + | chr6_4:70291881-70291900 | Msa0995000:intron | 50.0% | |
| AAAGGTTCCCCCTCTGACAA+CGG | - | chr6_4:70291893-70291912 | None:intergenic | 50.0% | |
| ACAGGTCCAAGGTAGTGTAG+TGG | + | chr6_4:70291990-70292009 | Msa0995000:intron | 50.0% | |
| CCAACTCCACTACACTACCT+TGG | - | chr6_4:70291999-70292018 | None:intergenic | 50.0% | |
| ! | CCAAGGTAGTGTAGTGGAGT+TGG | + | chr6_4:70291996-70292015 | Msa0995000:intron | 50.0% |
| GCGACTGTCCTTCAAATTGG+GGG | + | chr6_4:70292404-70292423 | Msa0995000:intron | 50.0% | |
| AGAAGCAGTCCGACTCAAAC+CGG | - | chr6_4:70292679-70292698 | None:intergenic | 50.0% | |
| ACGTCGCCCTCAATGACAAA+TGG | - | chr6_4:70293577-70293596 | None:intergenic | 50.0% | |
| CCAAAGGGGCTTCCATCATT+GGG | - | chr6_4:70293768-70293787 | None:intergenic | 50.0% | |
| ACCAAAGGGGCTTCCATCAT+TGG | - | chr6_4:70293769-70293788 | None:intergenic | 50.0% | |
| TCCATTGCTGAAGACAGCTG+AGG | + | chr6_4:70293806-70293825 | Msa0995000:CDS | 50.0% | |
| TCCTCAGCTGTCTTCAGCAA+TGG | - | chr6_4:70293810-70293829 | None:intergenic | 50.0% | |
| ! | TTGGGAGAGGAGCATATTCC+AGG | + | chr6_4:70293864-70293883 | Msa0995000:CDS | 50.0% |
| AGGACTTCACAGGGTATAGC+TGG | - | chr6_4:70294005-70294024 | None:intergenic | 50.0% | |
| !! | CGTGCTGCAGCTCCTTATTT+TGG | + | chr6_4:70294057-70294076 | Msa0995000:CDS | 50.0% |
| !! | TAGATGGGCAGAAGCACCTA+TGG | + | chr6_4:70294491-70294510 | Msa0995000:CDS | 50.0% |
| TCATCTAGTTGCAGGAGGAC+TGG | + | chr6_4:70294561-70294580 | Msa0995000:CDS | 50.0% | |
| GCCGCATGGAATTGATTGTC+AGG | + | chr6_4:70294812-70294831 | Msa0995000:intron | 50.0% | |
| ! | AAGGAGTGTGAAGAGGAAGC+AGG | + | chr6_4:70294846-70294865 | Msa0995000:CDS | 50.0% |
| AAGAGGAAGCAGGAATTCCG+AGG | + | chr6_4:70294856-70294875 | Msa0995000:CDS | 50.0% | |
| CAGCACGTGCACACTCACAT+GGG | + | chr6_4:70289829-70289848 | Msa0995000:CDS | 55.0% | |
| CAACTCGACAACGTTTGCCC+TGG | - | chr6_4:70291615-70291634 | None:intergenic | 55.0% | |
| GTGCAATCCCTTCGGAAGCA+GGG | - | chr6_4:70291700-70291719 | None:intergenic | 55.0% | |
| GATGGGATCCGTTGTCAGAG+GGG | + | chr6_4:70291882-70291901 | Msa0995000:intron | 55.0% | |
| ATGGGATCCGTTGTCAGAGG+GGG | + | chr6_4:70291883-70291902 | Msa0995000:intron | 55.0% | |
| TGGTGAAACGGACAGGTCCA+AGG | + | chr6_4:70291979-70291998 | Msa0995000:intron | 55.0% | |
| !! | ATGGCAGTGAGGTGGTGGAT+TGG | + | chr6_4:70292179-70292198 | Msa0995000:intron | 55.0% |
| !! | TGGCAGTGAGGTGGTGGATT+GGG | + | chr6_4:70292180-70292199 | Msa0995000:intron | 55.0% |
| !! | TGAGGTGGTGGATTGGGCTT+CGG | + | chr6_4:70292186-70292205 | Msa0995000:intron | 55.0% |
| !!! | GCCCCATTTTTTCGGTGGTG+TGG | + | chr6_4:70292354-70292373 | Msa0995000:intron | 55.0% |
| GCTCAGAGCCCCCAATTTGA+AGG | - | chr6_4:70292415-70292434 | None:intergenic | 55.0% | |
| !! | TAATGGTGAGAGTGTCGGGG+TGG | + | chr6_4:70292698-70292717 | Msa0995000:intron | 55.0% |
| !! | AATGGTGAGAGTGTCGGGGT+GGG | + | chr6_4:70292699-70292718 | Msa0995000:intron | 55.0% |
| ! | AGAAGGGTTGGCAGCAGTGA+AGG | + | chr6_4:70292956-70292975 | Msa0995000:intron | 55.0% |
| ACCCAAGCACAAGGCATGCA+CGG | - | chr6_4:70293233-70293252 | None:intergenic | 55.0% | |
| GAACTCTCAGAGAAGCCTGC+AGG | + | chr6_4:70293472-70293491 | Msa0995000:intron | 55.0% | |
| GTCATTGAGGGCGACGTTGT+TGG | + | chr6_4:70293580-70293599 | Msa0995000:CDS | 55.0% | |
| ! | CCCAATGATGGAAGCCCCTT+TGG | + | chr6_4:70293765-70293784 | Msa0995000:CDS | 55.0% |
| GAGGAAAAAACCAGCGCGCT+TGG | + | chr6_4:70293825-70293844 | Msa0995000:CDS | 55.0% | |
| GATTACATAGCCAAGCGCGC+TGG | - | chr6_4:70293838-70293857 | None:intergenic | 55.0% | |
| TTGCTACTGTTGCAGCCGCA+TGG | + | chr6_4:70294798-70294817 | Msa0995000:intron | 55.0% | |
| GCAGCACGTGCACACTCACA+TGG | + | chr6_4:70289828-70289847 | Msa0995000:CDS | 60.0% | |
| CGTGCAATCCCTTCGGAAGC+AGG | - | chr6_4:70291701-70291720 | None:intergenic | 60.0% | |
| GTTGAGTGGGGATGGCAGTG+AGG | + | chr6_4:70292168-70292187 | Msa0995000:intron | 60.0% | |
| TCCCGTGCATGCCTTGTGCT+TGG | + | chr6_4:70293228-70293247 | Msa0995000:intron | 60.0% | |
| CCCAAGCACAAGGCATGCAC+GGG | - | chr6_4:70293232-70293251 | None:intergenic | 60.0% | |
| CCCGTGCATGCCTTGTGCTT+GGG | + | chr6_4:70293229-70293248 | Msa0995000:intron | 60.0% | |
| TGTGCACGTGCTGCCACTGG+TGG | - | chr6_4:70289822-70289841 | None:intergenic | 65.0% | |
| GAGTGTGCACGTGCTGCCAC+TGG | - | chr6_4:70289825-70289844 | None:intergenic | 65.0% | |
| GAGTGGGGATGGCAGTGAGG+TGG | + | chr6_4:70292171-70292190 | Msa0995000:intron | 65.0% | |
| TGGGGATGGCAGTGAGGTGG+TGG | + | chr6_4:70292174-70292193 | Msa0995000:intron | 65.0% | |
| !! | GTGAGAGTGTCGGGGTGGGT+TGG | + | chr6_4:70292703-70292722 | Msa0995000:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 70289623 | 70294896 | 70289623 | ID=Msa0995000;Name=Msa0995000 |
| chr6_4 | mRNA | 70289623 | 70294896 | 70289623 | ID=Msa0995000-mRNA-1;Parent=Msa0995000;Name=Msa0995000-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.8|0.5|1|0.8|0.83|6|0|258 |
| chr6_4 | exon | 70289623 | 70289865 | 70289623 | ID=Msa0995000-mRNA-1:exon:13118;Parent=Msa0995000-mRNA-1 |
| chr6_4 | exon | 70293553 | 70293617 | 70293553 | ID=Msa0995000-mRNA-1:exon:13119;Parent=Msa0995000-mRNA-1 |
| chr6_4 | exon | 70293722 | 70293899 | 70293722 | ID=Msa0995000-mRNA-1:exon:13120;Parent=Msa0995000-mRNA-1 |
| chr6_4 | exon | 70294006 | 70294086 | 70294006 | ID=Msa0995000-mRNA-1:exon:13121;Parent=Msa0995000-mRNA-1 |
| chr6_4 | exon | 70294457 | 70294582 | 70294457 | ID=Msa0995000-mRNA-1:exon:13122;Parent=Msa0995000-mRNA-1 |
| chr6_4 | exon | 70294813 | 70294896 | 70294813 | ID=Msa0995000-mRNA-1:exon:13123;Parent=Msa0995000-mRNA-1 |
| chr6_4 | CDS | 70289623 | 70289865 | 70289623 | ID=Msa0995000-mRNA-1:cds;Parent=Msa0995000-mRNA-1 |
| chr6_4 | CDS | 70293553 | 70293617 | 70293553 | ID=Msa0995000-mRNA-1:cds;Parent=Msa0995000-mRNA-1 |
| chr6_4 | CDS | 70293722 | 70293899 | 70293722 | ID=Msa0995000-mRNA-1:cds;Parent=Msa0995000-mRNA-1 |
| chr6_4 | CDS | 70294006 | 70294086 | 70294006 | ID=Msa0995000-mRNA-1:cds;Parent=Msa0995000-mRNA-1 |
| chr6_4 | CDS | 70294457 | 70294582 | 70294457 | ID=Msa0995000-mRNA-1:cds;Parent=Msa0995000-mRNA-1 |
| chr6_4 | CDS | 70294813 | 70294896 | 70294813 | ID=Msa0995000-mRNA-1:cds;Parent=Msa0995000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
