Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995040 | XP_003619775.1 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 2.43e-74 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995040 | G7KPB8 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 1.16e-74 | 225 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0959840 | Msa0995040 | 0.811968 | 5.367449e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995040 | MtrunA17_Chr6g0478021 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 2.24e-78 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995040 | AT5G51960.2 | 60.000 | 110 | 37 | 1 | 1 | 110 | 1 | 103 | 2.41e-42 | 134 |
| Msa0995040 | AT5G51960.1 | 60.000 | 110 | 37 | 1 | 1 | 110 | 1 | 103 | 2.41e-42 | 134 |
Find 39 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTATACTTATATGCTTAA+TGG | 0.190532 | 6_4:-70384291 | Msa0995040:CDS |
| GTGTTGTAGGACTTTGTTTC+AGG | 0.204929 | 6_4:-70383478 | Msa0995040:three_prime_UTR |
| AGTTCGTTACTGAATGAAAA+TGG | 0.262964 | 6_4:-70383634 | Msa0995040:three_prime_UTR |
| CCCTTGCAGGAAGTAGGTTT+TGG | 0.268423 | 6_4:-70384510 | Msa0995040:intron |
| AACTATTGCCATTGTGTTGT+AGG | 0.332123 | 6_4:-70383491 | Msa0995040:three_prime_UTR |
| AAATCAACTGGTTTCGTGAT+TGG | 0.333194 | 6_4:+70383670 | None:intergenic |
| AAGGCGGTCAAGAAACATAT+TGG | 0.364646 | 6_4:-70384423 | Msa0995040:CDS |
| GGCGATAGATGTTAACTGTT+TGG | 0.367879 | 6_4:+70384454 | None:intergenic |
| ACAATGGCAATAGTTCTTAC+TGG | 0.401403 | 6_4:+70383499 | None:intergenic |
| GCACGAAAGCCCTTTCTTTG+TGG | 0.415179 | 6_4:+70383700 | None:intergenic |
| CTTTGTACTTCCACAAAGAA+AGG | 0.418152 | 6_4:-70383710 | Msa0995040:three_prime_UTR |
| CCAATCAAAACAAAATCAAC+TGG | 0.418680 | 6_4:+70383658 | None:intergenic |
| AATGTCGAATCATGTTCATA+AGG | 0.422294 | 6_4:-70383409 | Msa0995040:three_prime_UTR |
| TCTTGACCGCCTTGAGAAGA+TGG | 0.432707 | 6_4:+70384433 | None:intergenic |
| ATGTCGAATCATGTTCATAA+GGG | 0.452510 | 6_4:-70383408 | Msa0995040:three_prime_UTR |
| GTTACTGAATGAAAATGGTT+TGG | 0.457234 | 6_4:-70383629 | Msa0995040:three_prime_UTR |
| AGGCGGTCAAGAAACATATT+GGG | 0.477390 | 6_4:-70384422 | Msa0995040:CDS |
| TGTTTGCTTCCACCAGAGAA+AGG | 0.487246 | 6_4:+70386174 | None:intergenic |
| CCTCGGAGTTCCACAAGAAT+CGG | 0.490759 | 6_4:-70384362 | Msa0995040:CDS |
| TTTGTACTTCCACAAAGAAA+GGG | 0.517621 | 6_4:-70383709 | Msa0995040:three_prime_UTR |
| ATAGATGTTAACTGTTTGGA+AGG | 0.518205 | 6_4:+70384458 | None:intergenic |
| TGTAATCCCTTGCAGGAAGT+AGG | 0.538106 | 6_4:-70384516 | Msa0995040:intron |
| CATTATGATTGATAAACCTC+AGG | 0.553941 | 6_4:+70383769 | None:intergenic |
| ATGATTCGACATTTAGAGCA+TGG | 0.554156 | 6_4:+70383419 | None:intergenic |
| TGTTGGTCTTCAGCTTCCTG+AGG | 0.560132 | 6_4:-70383785 | Msa0995040:CDS |
| CAGACAGATTCCGATTCTTG+TGG | 0.562091 | 6_4:+70384352 | None:intergenic |
| GGAAAATCTGCTGCAAGTGT+TGG | 0.562393 | 6_4:-70383802 | Msa0995040:CDS |
| CATCTATCGCCATCTTCTCA+AGG | 0.575149 | 6_4:-70384442 | Msa0995040:CDS |
| AATGAAGTGAAAAGAACACT+TGG | 0.586563 | 6_4:-70383823 | Msa0995040:CDS |
| CTTTCTTTGTGGAAGTACAA+AGG | 0.586883 | 6_4:+70383711 | None:intergenic |
| TCGGAATCTGTCTGATGGTG+TGG | 0.587780 | 6_4:-70384343 | Msa0995040:CDS |
| AAGAATCGGAATCTGTCTGA+TGG | 0.612539 | 6_4:-70384348 | Msa0995040:CDS |
| AACAAGGCAATACCTTGTGA+TGG | 0.614812 | 6_4:+70384262 | None:intergenic |
| TAATGGTGTGCACCATCACA+AGG | 0.617495 | 6_4:-70384274 | Msa0995040:intron |
| CCGATTCTTGTGGAACTCCG+AGG | 0.631297 | 6_4:+70384362 | None:intergenic |
| AGCAAACAGAATCCAAATCG+CGG | 0.659957 | 6_4:-70386159 | Msa0995040:five_prime_UTR |
| AACAAAGTCCTACAACACAA+TGG | 0.714204 | 6_4:+70383483 | None:intergenic |
| CTATCGCCATCTTCTCAAGG+CGG | 0.739647 | 6_4:-70384439 | Msa0995040:CDS |
| AAGAGGAGGAAGCATCACAG+CGG | 0.771684 | 6_4:-70383572 | Msa0995040:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATATATTGCA+CGG | - | chr6_4:70383465-70383484 | Msa0995040:three_prime_UTR | 10.0% |
| !!! | AATTCTACTTCTATTTTTTT+TGG | - | chr6_4:70383789-70383808 | Msa0995040:CDS | 15.0% |
| !! | AAAAAAAAAGCAAGTAAGAA+CGG | + | chr6_4:70383443-70383462 | None:intergenic | 20.0% |
| !!! | TATATACATAAGCTATTTCT+GGG | - | chr6_4:70383679-70383698 | Msa0995040:three_prime_UTR | 20.0% |
| !!! | TTTTTTGGAATTTTTTGTGA+AGG | - | chr6_4:70383804-70383823 | Msa0995040:CDS | 20.0% |
| !!! | TTTTTGGAATTTTTTGTGAA+GGG | - | chr6_4:70383805-70383824 | Msa0995040:CDS | 20.0% |
| !! | AATCATGAAACTTAAAATAG+AGG | - | chr6_4:70384473-70384492 | Msa0995040:CDS | 20.0% |
| !! | AAACTAAGAACCTAAAAAAT+GGG | + | chr6_4:70384925-70384944 | None:intergenic | 20.0% |
| !! | AAAACTAAGAACCTAAAAAA+TGG | + | chr6_4:70384926-70384945 | None:intergenic | 20.0% |
| !!! | TTTGGAATAGAACAAAATTT+AGG | + | chr6_4:70384972-70384991 | None:intergenic | 20.0% |
| !!! | TTTTTTAGAATTTGTAACCT+CGG | - | chr6_4:70385131-70385150 | Msa0995040:intron | 20.0% |
| !! | GATTATACTTATATGCTTAA+TGG | - | chr6_4:70385219-70385238 | Msa0995040:intron | 20.0% |
| !! | TATTGCAAAATAAAAGTAAG+AGG | - | chr6_4:70385403-70385422 | Msa0995040:intron | 20.0% |
| !!! | TGTGTTAATTTTTGAATGTA+TGG | - | chr6_4:70385770-70385789 | Msa0995040:intron | 20.0% |
| !! | TGAAAACTTTAACTAAAAAG+AGG | - | chr6_4:70385921-70385940 | Msa0995040:intron | 20.0% |
| !! | CTATATACATAAGCTATTTC+TGG | - | chr6_4:70383678-70383697 | Msa0995040:three_prime_UTR | 25.0% |
| ! | ACATGTTAACGTTTATTGAT+GGG | + | chr6_4:70384250-70384269 | None:intergenic | 25.0% |
| ! | TCAATCACTTCAATTATGTT+TGG | + | chr6_4:70384658-70384677 | None:intergenic | 25.0% |
| ! | GTAAGGAAAAAAAGAAAGTA+AGG | + | chr6_4:70384813-70384832 | None:intergenic | 25.0% |
| ! | AAATTGTATCTCTTTCATCT+TGG | - | chr6_4:70384880-70384899 | Msa0995040:intron | 25.0% |
| !!! | TCTTAGTTTTTCTTTTTCTC+TGG | - | chr6_4:70384936-70384955 | Msa0995040:intron | 25.0% |
| ! | GGGAAAATACAATAAAAACA+AGG | + | chr6_4:70385267-70385286 | None:intergenic | 25.0% |
| ! | AATACAAGTGATTGTTTGAA+GGG | + | chr6_4:70385287-70385306 | None:intergenic | 25.0% |
| ! | AAAATCAGCCAAATAAAATG+TGG | + | chr6_4:70385596-70385615 | None:intergenic | 25.0% |
| ! | AAACTTTAACTAAAAAGAGG+AGG | - | chr6_4:70385924-70385943 | Msa0995040:intron | 25.0% |
| ! | TTGTTTTCTTTTCTTCGCTT+CGG | + | chr6_4:70383393-70383412 | None:intergenic | 30.0% |
| TAAGTATCTTTCCTTTGAGT+TGG | - | chr6_4:70383417-70383436 | Msa0995040:three_prime_UTR | 30.0% | |
| ! | TTGCAATTTTCTGCACTATT+TGG | - | chr6_4:70383716-70383735 | Msa0995040:three_prime_UTR | 30.0% |
| ATTGATCCAAAGTAAAAGCA+TGG | - | chr6_4:70383745-70383764 | Msa0995040:three_prime_UTR | 30.0% | |
| TCTACCTCTATTTCATTGTA+TGG | - | chr6_4:70383909-70383928 | Msa0995040:intron | 30.0% | |
| TACACCATACAATGAAATAG+AGG | + | chr6_4:70383916-70383935 | None:intergenic | 30.0% | |
| TGCTATAAAGTTACTGCTAT+GGG | + | chr6_4:70384071-70384090 | None:intergenic | 30.0% | |
| ATGCTATAAAGTTACTGCTA+TGG | + | chr6_4:70384072-70384091 | None:intergenic | 30.0% | |
| CACATGTTAACGTTTATTGA+TGG | + | chr6_4:70384251-70384270 | None:intergenic | 30.0% | |
| AATAAACGTTAACATGTGCT+TGG | - | chr6_4:70384253-70384272 | Msa0995040:intron | 30.0% | |
| ATGGGAAGAATTATCATTCA+CGG | + | chr6_4:70384311-70384330 | None:intergenic | 30.0% | |
| ATGATAATTCTTCCCATTCA+AGG | - | chr6_4:70384314-70384333 | Msa0995040:CDS | 30.0% | |
| TTGATCTTCATACAAACCAT+TGG | + | chr6_4:70384355-70384374 | None:intergenic | 30.0% | |
| CATAAGAGAAAAGTAGAAGA+TGG | - | chr6_4:70384408-70384427 | Msa0995040:CDS | 30.0% | |
| AAAAAAAATCCTCCATCAAC+GGG | + | chr6_4:70384538-70384557 | None:intergenic | 30.0% | |
| CAAAAAAAATCCTCCATCAA+CGG | + | chr6_4:70384539-70384558 | None:intergenic | 30.0% | |
| TATGTAATGAGCTGATTGAA+TGG | - | chr6_4:70384595-70384614 | Msa0995040:intron | 30.0% | |
| ATGTAATGAGCTGATTGAAT+GGG | - | chr6_4:70384596-70384615 | Msa0995040:intron | 30.0% | |
| ! | TTTTCGAATCCAATATACAG+AGG | - | chr6_4:70384716-70384735 | Msa0995040:intron | 30.0% |
| ! | TTTATTTCTTCTCTCATCCT+TGG | - | chr6_4:70384780-70384799 | Msa0995040:intron | 30.0% |
| ! | TTATTTCTTCTCTCATCCTT+GGG | - | chr6_4:70384781-70384800 | Msa0995040:intron | 30.0% |
| ! | TTTCTTTTTCTCTGGTAACA+AGG | - | chr6_4:70384944-70384963 | Msa0995040:intron | 30.0% |
| ATAGATGTTAACTGTTTGGA+AGG | + | chr6_4:70385055-70385074 | None:intergenic | 30.0% | |
| CAATACAAGTGATTGTTTGA+AGG | + | chr6_4:70385288-70385307 | None:intergenic | 30.0% | |
| TTATAATACTACATCTGCAG+AGG | + | chr6_4:70385504-70385523 | None:intergenic | 30.0% | |
| CTGCAGATGTAGTATTATAA+TGG | - | chr6_4:70385504-70385523 | Msa0995040:intron | 30.0% | |
| GTCTTGTGTAAATCATTACT+AGG | - | chr6_4:70385564-70385583 | Msa0995040:intron | 30.0% | |
| ! | GGAAAAAGCCACATTTTATT+TGG | - | chr6_4:70385585-70385604 | Msa0995040:intron | 30.0% |
| AGATTGTTGACAATGATTCA+TGG | + | chr6_4:70385623-70385642 | None:intergenic | 30.0% | |
| AATGAAGTGAAAAGAACACT+TGG | - | chr6_4:70385687-70385706 | Msa0995040:intron | 30.0% | |
| CATTATGATTGATAAACCTC+AGG | + | chr6_4:70385744-70385763 | None:intergenic | 30.0% | |
| TTTGTACTTCCACAAAGAAA+GGG | - | chr6_4:70385801-70385820 | Msa0995040:intron | 30.0% | |
| CCAATCAAAACAAAATCAAC+TGG | + | chr6_4:70385855-70385874 | None:intergenic | 30.0% | |
| !!! | CCAGTTGATTTTGTTTTGAT+TGG | - | chr6_4:70385852-70385871 | Msa0995040:intron | 30.0% |
| AGTTCGTTACTGAATGAAAA+TGG | - | chr6_4:70385876-70385895 | Msa0995040:intron | 30.0% | |
| GTTACTGAATGAAAATGGTT+TGG | - | chr6_4:70385881-70385900 | Msa0995040:intron | 30.0% | |
| !!! | TTAGTTGCTTTTAAGAGACA+TGG | + | chr6_4:70386069-70386088 | None:intergenic | 30.0% |
| AATGTCGAATCATGTTCATA+AGG | - | chr6_4:70386101-70386120 | Msa0995040:intron | 30.0% | |
| ATGTCGAATCATGTTCATAA+GGG | - | chr6_4:70386102-70386121 | Msa0995040:intron | 30.0% | |
| ! | TCTTTTACAGATGTTTGCAA+TGG | - | chr6_4:70386158-70386177 | Msa0995040:five_prime_UTR | 30.0% |
| ! | TGTTTTCTTTTCTTCGCTTC+GGG | + | chr6_4:70383392-70383411 | None:intergenic | 35.0% |
| AAGCGTGTATCATGATAAAC+TGG | - | chr6_4:70383571-70383590 | Msa0995040:three_prime_UTR | 35.0% | |
| ! | TCAAGTCCATGCTTTTACTT+TGG | + | chr6_4:70383754-70383773 | None:intergenic | 35.0% |
| ! | TAAAAGCATGGACTTGATGT+TGG | - | chr6_4:70383757-70383776 | Msa0995040:exon | 35.0% |
| ACATTTGTAGGGATTGAGTT+AGG | + | chr6_4:70383988-70384007 | None:intergenic | 35.0% | |
| TAACTCAATCCCTACAAATG+TGG | - | chr6_4:70383987-70384006 | Msa0995040:intron | 35.0% | |
| AACTCAATCCCTACAAATGT+GGG | - | chr6_4:70383988-70384007 | Msa0995040:intron | 35.0% | |
| TTAAGAGTCCCACATTTGTA+GGG | + | chr6_4:70383999-70384018 | None:intergenic | 35.0% | |
| AGCAGTAACTTTATAGCATG+TGG | - | chr6_4:70384073-70384092 | Msa0995040:intron | 35.0% | |
| ! | ACCATCTTTGAATTTGGGTT+GGG | - | chr6_4:70384122-70384141 | Msa0995040:intron | 35.0% |
| GAGCATCAATAAGCCTAAAT+TGG | + | chr6_4:70384228-70384247 | None:intergenic | 35.0% | |
| TGGGAAGAATTATCATTCAC+GGG | + | chr6_4:70384310-70384329 | None:intergenic | 35.0% | |
| TCTTCATACAAACCATTGGT+TGG | + | chr6_4:70384351-70384370 | None:intergenic | 35.0% | |
| AGATCAATGTAGTGAAGATC+CGG | - | chr6_4:70384368-70384387 | Msa0995040:CDS | 35.0% | |
| AGAGAAAAGTAGAAGATGGA+AGG | - | chr6_4:70384412-70384431 | Msa0995040:CDS | 35.0% | |
| AGAAACCAGATATCTATACG+TGG | - | chr6_4:70384500-70384519 | Msa0995040:five_prime_UTR | 35.0% | |
| CAATTATGTTTGGCGTAATC+AGG | + | chr6_4:70384648-70384667 | None:intergenic | 35.0% | |
| GAATCCAATATACAGAGGAA+TGG | - | chr6_4:70384721-70384740 | Msa0995040:intron | 35.0% | |
| TCATCCATTCCTCTGTATAT+TGG | + | chr6_4:70384728-70384747 | None:intergenic | 35.0% | |
| GAAGACAGTTTCACATAGTA+AGG | + | chr6_4:70384752-70384771 | None:intergenic | 35.0% | |
| GAGATCAAAGAAGGATTGTA+AGG | + | chr6_4:70384830-70384849 | None:intergenic | 35.0% | |
| ACAGTTAGAGAGATCAAAGA+AGG | + | chr6_4:70384839-70384858 | None:intergenic | 35.0% | |
| GAACCTAAAAAATGGGACAA+GGG | + | chr6_4:70384918-70384937 | None:intergenic | 35.0% | |
| AGAACCTAAAAAATGGGACA+AGG | + | chr6_4:70384919-70384938 | None:intergenic | 35.0% | |
| !!! | GAGCAAGCTTTATTTTCTGT+TGG | + | chr6_4:70385197-70385216 | None:intergenic | 35.0% |
| AGTCTGTACATTGTTCTGAT+TGG | - | chr6_4:70385311-70385330 | Msa0995040:intron | 35.0% | |
| ! | CATTGTTCTGATTGGTCAAA+TGG | - | chr6_4:70385319-70385338 | Msa0995040:intron | 35.0% |
| ! | AAAAGTAAGAGGTGTAGAAG+AGG | - | chr6_4:70385414-70385433 | Msa0995040:intron | 35.0% |
| ATCATTGTCAACAATCTTGC+AGG | - | chr6_4:70385626-70385645 | Msa0995040:intron | 35.0% | |
| ! | CTTTCTTTGTGGAAGTACAA+AGG | + | chr6_4:70385802-70385821 | None:intergenic | 35.0% |
| CTTTGTACTTCCACAAAGAA+AGG | - | chr6_4:70385800-70385819 | Msa0995040:intron | 35.0% | |
| ! | AAATCAACTGGTTTCGTGAT+TGG | + | chr6_4:70385843-70385862 | None:intergenic | 35.0% |
| ACAATGGCAATAGTTCTTAC+TGG | + | chr6_4:70386014-70386033 | None:intergenic | 35.0% | |
| AACTATTGCCATTGTGTTGT+AGG | - | chr6_4:70386019-70386038 | Msa0995040:intron | 35.0% | |
| AACAAAGTCCTACAACACAA+TGG | + | chr6_4:70386030-70386049 | None:intergenic | 35.0% | |
| ! | ATGATTCGACATTTAGAGCA+TGG | + | chr6_4:70386094-70386113 | None:intergenic | 35.0% |
| AGCAAACAGAATCCAAATCG+CGG | - | chr6_4:70383351-70383370 | Msa0995040:three_prime_UTR | 40.0% | |
| GTGCTAAAAGTGGTGAACAT+TGG | - | chr6_4:70383832-70383851 | Msa0995040:CDS | 40.0% | |
| TGGTGAACATTGGATGATGA+TGG | - | chr6_4:70383842-70383861 | Msa0995040:CDS | 40.0% | |
| GAGATTCAAAACACGTCTCT+TGG | - | chr6_4:70383949-70383968 | Msa0995040:intron | 40.0% | |
| AAAACACGTCTCTTGGAACT+TGG | - | chr6_4:70383956-70383975 | Msa0995040:intron | 40.0% | |
| AAACACGTCTCTTGGAACTT+GGG | - | chr6_4:70383957-70383976 | Msa0995040:intron | 40.0% | |
| GTTAAGAGTCCCACATTTGT+AGG | + | chr6_4:70384000-70384019 | None:intergenic | 40.0% | |
| ACTTTATAGCATGTGGCTCA+TGG | - | chr6_4:70384080-70384099 | Msa0995040:intron | 40.0% | |
| TCTGGCACCATCTTTGAATT+TGG | - | chr6_4:70384116-70384135 | Msa0995040:intron | 40.0% | |
| CTGGCACCATCTTTGAATTT+GGG | - | chr6_4:70384117-70384136 | Msa0995040:intron | 40.0% | |
| CACCATCTTTGAATTTGGGT+TGG | - | chr6_4:70384121-70384140 | Msa0995040:intron | 40.0% | |
| TCAACACGTGTTCATAAGTG+GGG | + | chr6_4:70384192-70384211 | None:intergenic | 40.0% | |
| CTCAACACGTGTTCATAAGT+GGG | + | chr6_4:70384193-70384212 | None:intergenic | 40.0% | |
| GGTCGTATCTCATCCAATTT+AGG | - | chr6_4:70384212-70384231 | Msa0995040:intron | 40.0% | |
| AAGAATTATCATTCACGGGC+AGG | + | chr6_4:70384306-70384325 | None:intergenic | 40.0% | |
| !! | GTGTTGGTTTCACCTTGAAT+GGG | + | chr6_4:70384329-70384348 | None:intergenic | 40.0% |
| ! | TACAAACCATTGGTTGGTGT+TGG | + | chr6_4:70384345-70384364 | None:intergenic | 40.0% |
| TGATTACTCAACCAAACTGC+CGG | + | chr6_4:70384390-70384409 | None:intergenic | 40.0% | |
| AAAGTAGAAGATGGAAGGAG+TGG | - | chr6_4:70384417-70384436 | Msa0995040:CDS | 40.0% | |
| GAACTCCACGTATAGATATC+TGG | + | chr6_4:70384508-70384527 | None:intergenic | 40.0% | |
| TATGTTTGGCGTAATCAGGT+GGG | + | chr6_4:70384644-70384663 | None:intergenic | 40.0% | |
| TTATGTTTGGCGTAATCAGG+TGG | + | chr6_4:70384645-70384664 | None:intergenic | 40.0% | |
| !!! | ACACCCTTGTCCCATTTTTT+AGG | - | chr6_4:70384912-70384931 | Msa0995040:intron | 40.0% |
| CCTGCAAGGGATTACATATT+TGG | + | chr6_4:70384990-70385009 | None:intergenic | 40.0% | |
| CCAAATATGTAATCCCTTGC+AGG | - | chr6_4:70384987-70385006 | Msa0995040:intron | 40.0% | |
| GGCGATAGATGTTAACTGTT+TGG | + | chr6_4:70385059-70385078 | None:intergenic | 40.0% | |
| AAGGCGGTCAAGAAACATAT+TGG | - | chr6_4:70385087-70385106 | Msa0995040:intron | 40.0% | |
| AGGCGGTCAAGAAACATATT+GGG | - | chr6_4:70385088-70385107 | Msa0995040:intron | 40.0% | |
| AAGAATCGGAATCTGTCTGA+TGG | - | chr6_4:70385162-70385181 | Msa0995040:intron | 40.0% | |
| AACAAGGCAATACCTTGTGA+TGG | + | chr6_4:70385251-70385270 | None:intergenic | 40.0% | |
| GAAATTCAGCATAGCCAAGT+TGG | - | chr6_4:70385466-70385485 | Msa0995040:intron | 40.0% | |
| ATACTACATCTGCAGAGGAT+TGG | + | chr6_4:70385499-70385518 | None:intergenic | 40.0% | |
| ! | GTGTTGTAGGACTTTGTTTC+AGG | - | chr6_4:70386032-70386051 | Msa0995040:intron | 40.0% |
| TGTTTGCTTCCACCAGAGAA+AGG | + | chr6_4:70383339-70383358 | None:intergenic | 45.0% | |
| AGTAAGAACGGCCAACTCAA+AGG | + | chr6_4:70383431-70383450 | None:intergenic | 45.0% | |
| GAAGGGTTGAGTGCTAAAAG+TGG | - | chr6_4:70383822-70383841 | Msa0995040:CDS | 45.0% | |
| CGATCTAGATGTCTAGTCCT+GGG | + | chr6_4:70384037-70384056 | None:intergenic | 45.0% | |
| ACGATCTAGATGTCTAGTCC+TGG | + | chr6_4:70384038-70384057 | None:intergenic | 45.0% | |
| CTAGACATCTAGATCGTGAC+CGG | - | chr6_4:70384041-70384060 | Msa0995040:intron | 45.0% | |
| TAGACATCTAGATCGTGACC+GGG | - | chr6_4:70384042-70384061 | Msa0995040:intron | 45.0% | |
| GTGGCTCATGGATATCGAAT+AGG | - | chr6_4:70384092-70384111 | Msa0995040:intron | 45.0% | |
| CATGGATATCGAATAGGCTC+TGG | - | chr6_4:70384098-70384117 | Msa0995040:intron | 45.0% | |
| GCCCAACCCAAATTCAAAGA+TGG | + | chr6_4:70384126-70384145 | None:intergenic | 45.0% | |
| !! | TCTTTGAATTTGGGTTGGGC+CGG | - | chr6_4:70384126-70384145 | Msa0995040:intron | 45.0% |
| GTTATCCTCACCATACAAGC+CGG | + | chr6_4:70384169-70384188 | None:intergenic | 45.0% | |
| CAACACGTGTTCATAAGTGG+GGG | + | chr6_4:70384191-70384210 | None:intergenic | 45.0% | |
| CCTCAACACGTGTTCATAAG+TGG | + | chr6_4:70384194-70384213 | None:intergenic | 45.0% | |
| CCACTTATGAACACGTGTTG+AGG | - | chr6_4:70384191-70384210 | Msa0995040:intron | 45.0% | |
| !! | GGTGTTGGTTTCACCTTGAA+TGG | + | chr6_4:70384330-70384349 | None:intergenic | 45.0% |
| GTGAAACCAACACCAACCAA+TGG | - | chr6_4:70384336-70384355 | Msa0995040:CDS | 45.0% | |
| AAAATCCTCCATCAACGGGA+TGG | + | chr6_4:70384534-70384553 | None:intergenic | 45.0% | |
| TTTCTTCTCTCATCCTTGGG+AGG | - | chr6_4:70384784-70384803 | Msa0995040:intron | 45.0% | |
| TGTAATCCCTTGCAGGAAGT+AGG | - | chr6_4:70384994-70385013 | Msa0995040:intron | 45.0% | |
| CCAAAACCTACTTCCTGCAA+GGG | + | chr6_4:70385003-70385022 | None:intergenic | 45.0% | |
| TCCAAAACCTACTTCCTGCA+AGG | + | chr6_4:70385004-70385023 | None:intergenic | 45.0% | |
| CATCTATCGCCATCTTCTCA+AGG | - | chr6_4:70385068-70385087 | Msa0995040:intron | 45.0% | |
| CAGACAGATTCCGATTCTTG+TGG | + | chr6_4:70385161-70385180 | None:intergenic | 45.0% | |
| TAATGGTGTGCACCATCACA+AGG | - | chr6_4:70385236-70385255 | Msa0995040:intron | 45.0% | |
| !! | GGATTGGCTTGAATCCAACT+TGG | + | chr6_4:70385483-70385502 | None:intergenic | 45.0% |
| GGAAAATCTGCTGCAAGTGT+TGG | - | chr6_4:70385708-70385727 | Msa0995040:intron | 45.0% | |
| !! | TCTGCTTTTCTGCCGCGATT+TGG | + | chr6_4:70383366-70383385 | None:intergenic | 50.0% |
| CGTCTCTTGGAACTTGGGTT+TGG | - | chr6_4:70383962-70383981 | Msa0995040:intron | 50.0% | |
| TCTAGTCCTGGGCATGAAGA+GGG | + | chr6_4:70384026-70384045 | None:intergenic | 50.0% | |
| GGTTTCGTAAGGATTGCGTC+CGG | + | chr6_4:70384148-70384167 | None:intergenic | 50.0% | |
| GGACGCAATCCTTACGAAAC+CGG | - | chr6_4:70384147-70384166 | Msa0995040:intron | 50.0% | |
| ! | CCATACAAGCCGGTTTCGTA+AGG | + | chr6_4:70384159-70384178 | None:intergenic | 50.0% |
| !! | CCTTACGAAACCGGCTTGTA+TGG | - | chr6_4:70384156-70384175 | Msa0995040:intron | 50.0% |
| GTAGTGAAGATCCGGCAGTT+TGG | - | chr6_4:70384376-70384395 | Msa0995040:CDS | 50.0% | |
| ! | AGTTCTGACCATCCCGTTGA+TGG | - | chr6_4:70384523-70384542 | Msa0995040:intron | 50.0% |
| GAAAGTAAGGCTTCCTCCCA+AGG | + | chr6_4:70384800-70384819 | None:intergenic | 50.0% | |
| ! | CCCTTGCAGGAAGTAGGTTT+TGG | - | chr6_4:70385000-70385019 | Msa0995040:intron | 50.0% |
| CTATCGCCATCTTCTCAAGG+CGG | - | chr6_4:70385071-70385090 | Msa0995040:intron | 50.0% | |
| TCTTGACCGCCTTGAGAAGA+TGG | + | chr6_4:70385080-70385099 | None:intergenic | 50.0% | |
| CCTCGGAGTTCCACAAGAAT+CGG | - | chr6_4:70385148-70385167 | Msa0995040:intron | 50.0% | |
| ! | TCGGAATCTGTCTGATGGTG+TGG | - | chr6_4:70385167-70385186 | Msa0995040:intron | 50.0% |
| !! | TGTTGGTCTTCAGCTTCCTG+AGG | - | chr6_4:70385725-70385744 | Msa0995040:intron | 50.0% |
| GCACGAAAGCCCTTTCTTTG+TGG | + | chr6_4:70385813-70385832 | None:intergenic | 50.0% | |
| !! | AAGAGGAGGAAGCATCACAG+CGG | - | chr6_4:70385938-70385957 | Msa0995040:intron | 50.0% |
| AACACACCCTCTTCATGCCC+AGG | - | chr6_4:70384017-70384036 | Msa0995040:intron | 55.0% | |
| GTCTAGTCCTGGGCATGAAG+AGG | + | chr6_4:70384027-70384046 | None:intergenic | 55.0% | |
| ACATCTAGATCGTGACCGGG+TGG | - | chr6_4:70384045-70384064 | Msa0995040:intron | 55.0% | |
| AGTTACTGCTATGGGCCACC+CGG | + | chr6_4:70384063-70384082 | None:intergenic | 55.0% | |
| !! | CGAAACCGGCTTGTATGGTG+AGG | - | chr6_4:70384161-70384180 | Msa0995040:intron | 55.0% |
| AGATGGAAGGAGTGGTGCTC+TGG | - | chr6_4:70384425-70384444 | Msa0995040:CDS | 55.0% | |
| ! | TCTGACCATCCCGTTGATGG+AGG | - | chr6_4:70384526-70384545 | Msa0995040:intron | 55.0% |
| CCGATTCTTGTGGAACTCCG+AGG | + | chr6_4:70385151-70385170 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 70383332 | 70386200 | 70383332 | ID=Msa0995040;Name=Msa0995040 |
| chr6_4 | mRNA | 70383332 | 70386200 | 70383332 | ID=Msa0995040-mRNA-1;Parent=Msa0995040;Name=Msa0995040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=114|1|1|1|0.5|0.33|3|439|110 |
| chr6_4 | exon | 70383332 | 70383884 | 70383332 | ID=Msa0995040-mRNA-1:exon:13126;Parent=Msa0995040-mRNA-1 |
| chr6_4 | exon | 70384275 | 70384523 | 70384275 | ID=Msa0995040-mRNA-1:exon:13125;Parent=Msa0995040-mRNA-1 |
| chr6_4 | exon | 70386117 | 70386200 | 70386117 | ID=Msa0995040-mRNA-1:exon:13124;Parent=Msa0995040-mRNA-1 |
| chr6_4 | five_prime_UTR | 70386117 | 70386200 | 70386117 | ID=Msa0995040-mRNA-1:five_prime_utr;Parent=Msa0995040-mRNA-1 |
| chr6_4 | five_prime_UTR | 70384494 | 70384523 | 70384494 | ID=Msa0995040-mRNA-1:five_prime_utr;Parent=Msa0995040-mRNA-1 |
| chr6_4 | CDS | 70384275 | 70384493 | 70384275 | ID=Msa0995040-mRNA-1:cds;Parent=Msa0995040-mRNA-1 |
| chr6_4 | CDS | 70383771 | 70383884 | 70383771 | ID=Msa0995040-mRNA-1:cds;Parent=Msa0995040-mRNA-1 |
| chr6_4 | three_prime_UTR | 70383332 | 70383770 | 70383332 | ID=Msa0995040-mRNA-1:three_prime_utr;Parent=Msa0995040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
