Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959840 | G7KPB8 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 1.16e-74 | 225 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa0959840 | 0.839181 | 1.847205e-57 | -8.615850e-47 |
| Msa0008090 | Msa0959840 | 0.806649 | 7.424944e-50 | -8.615850e-47 |
| Msa0008410 | Msa0959840 | 0.803658 | 3.138504e-49 | -8.615850e-47 |
| Msa0027580 | Msa0959840 | 0.812961 | 3.257564e-51 | -8.615850e-47 |
| Msa0033880 | Msa0959840 | 0.807305 | 5.392711e-50 | -8.615850e-47 |
| Msa0047980 | Msa0959840 | 0.808095 | 3.664846e-50 | -8.615850e-47 |
| Msa0048180 | Msa0959840 | 0.801786 | 7.641171e-49 | -8.615850e-47 |
| Msa0062120 | Msa0959840 | 0.801256 | 9.812134e-49 | -8.615850e-47 |
| Msa0064350 | Msa0959840 | 0.806676 | 7.328553e-50 | -8.615850e-47 |
| Msa0073670 | Msa0959840 | 0.825460 | 4.631558e-54 | -8.615850e-47 |
| Msa0075340 | Msa0959840 | 0.811937 | 5.452693e-51 | -8.615850e-47 |
| Msa0076000 | Msa0959840 | 0.806526 | 7.883259e-50 | -8.615850e-47 |
| Msa0101180 | Msa0959840 | 0.802690 | 4.976585e-49 | -8.615850e-47 |
| Msa0108870 | Msa0959840 | 0.803431 | 3.497011e-49 | -8.615850e-47 |
| Msa0115370 | Msa0959840 | 0.809523 | 1.814047e-50 | -8.615850e-47 |
| Msa0606810 | Msa0959840 | 0.815545 | 8.750955e-52 | -8.615850e-47 |
| Msa0610390 | Msa0959840 | 0.814970 | 1.174790e-51 | -8.615850e-47 |
| Msa0614490 | Msa0959840 | 0.800181 | 1.625971e-48 | -8.615850e-47 |
| Msa0614510 | Msa0959840 | 0.811595 | 6.471014e-51 | -8.615850e-47 |
| Msa0625790 | Msa0959840 | 0.801649 | 8.151930e-49 | -8.615850e-47 |
| Msa0639120 | Msa0959840 | 0.831609 | 1.514946e-55 | -8.615850e-47 |
| Msa0650920 | Msa0959840 | 0.817866 | 2.639871e-52 | -8.615850e-47 |
| Msa0652300 | Msa0959840 | 0.815362 | 9.612444e-52 | -8.615850e-47 |
| Msa0654870 | Msa0959840 | 0.826261 | 2.989630e-54 | -8.615850e-47 |
| Msa0663900 | Msa0959840 | 0.816968 | 4.206902e-52 | -8.615850e-47 |
| Msa0666230 | Msa0959840 | 0.804279 | 2.331809e-49 | -8.615850e-47 |
| Msa0687630 | Msa0959840 | 0.826043 | 3.368109e-54 | -8.615850e-47 |
| Msa0689500 | Msa0959840 | 0.805077 | 1.588550e-49 | -8.615850e-47 |
| Msa0692840 | Msa0959840 | 0.810159 | 1.323752e-50 | -8.615850e-47 |
| Msa0692940 | Msa0959840 | 0.815412 | 9.369847e-52 | -8.615850e-47 |
| Msa0707390 | Msa0959840 | 0.802042 | 6.769810e-49 | -8.615850e-47 |
| Msa0711490 | Msa0959840 | 0.805818 | 1.110805e-49 | -8.615850e-47 |
| Msa0733480 | Msa0959840 | 0.823452 | 1.374900e-53 | -8.615850e-47 |
| Msa0734960 | Msa0959840 | 0.837808 | 4.177117e-57 | -8.615850e-47 |
| Msa0735310 | Msa0959840 | 0.815600 | 8.506475e-52 | -8.615850e-47 |
| Msa0743800 | Msa0959840 | 0.805583 | 1.244515e-49 | -8.615850e-47 |
| Msa0750920 | Msa0959840 | 0.806801 | 6.894828e-50 | -8.615850e-47 |
| Msa0755340 | Msa0959840 | 0.802942 | 4.415596e-49 | -8.615850e-47 |
| Msa0756930 | Msa0959840 | 0.817566 | 3.086292e-52 | -8.615850e-47 |
| Msa0787750 | Msa0959840 | 0.800541 | 1.373142e-48 | -8.615850e-47 |
| Msa0794050 | Msa0959840 | 0.816292 | 5.961275e-52 | -8.615850e-47 |
| Msa0795660 | Msa0959840 | 0.809318 | 2.007780e-50 | -8.615850e-47 |
| Msa0797120 | Msa0959840 | 0.802342 | 5.872334e-49 | -8.615850e-47 |
| Msa0797750 | Msa0959840 | 0.800398 | 1.468348e-48 | -8.615850e-47 |
| Msa0805500 | Msa0959840 | 0.822531 | 2.253878e-53 | -8.615850e-47 |
| Msa0812140 | Msa0959840 | 0.817883 | 2.617689e-52 | -8.615850e-47 |
| Msa0814250 | Msa0959840 | 0.829796 | 4.213006e-55 | -8.615850e-47 |
| Msa0814320 | Msa0959840 | 0.813142 | 2.972780e-51 | -8.615850e-47 |
| Msa0824640 | Msa0959840 | 0.825875 | 3.691991e-54 | -8.615850e-47 |
| Msa0836500 | Msa0959840 | 0.827977 | 1.161148e-54 | -8.615850e-47 |
| Msa0127040 | Msa0959840 | 0.807701 | 4.445214e-50 | -8.615850e-47 |
| Msa0127310 | Msa0959840 | 0.816734 | 4.747336e-52 | -8.615850e-47 |
| Msa0127850 | Msa0959840 | 0.803188 | 3.926930e-49 | -8.615850e-47 |
| Msa0137040 | Msa0959840 | 0.811573 | 6.543978e-51 | -8.615850e-47 |
| Msa0149390 | Msa0959840 | 0.805644 | 1.208344e-49 | -8.615850e-47 |
| Msa0165950 | Msa0959840 | 0.804993 | 1.654304e-49 | -8.615850e-47 |
| Msa0166750 | Msa0959840 | 0.814223 | 1.718936e-51 | -8.615850e-47 |
| Msa0167480 | Msa0959840 | 0.806571 | 7.712096e-50 | -8.615850e-47 |
| Msa0174000 | Msa0959840 | 0.812185 | 4.813771e-51 | -8.615850e-47 |
| Msa0174770 | Msa0959840 | 0.819323 | 1.233761e-52 | -8.615850e-47 |
| Msa0177230 | Msa0959840 | 0.800745 | 1.248003e-48 | -8.615850e-47 |
| Msa0181610 | Msa0959840 | 0.811005 | 8.690874e-51 | -8.615850e-47 |
| Msa0193600 | Msa0959840 | 0.815256 | 1.014959e-51 | -8.615850e-47 |
| Msa0199690 | Msa0959840 | 0.833587 | 4.894675e-56 | -8.615850e-47 |
| Msa0199880 | Msa0959840 | 0.802969 | 4.358553e-49 | -8.615850e-47 |
| Msa0226460 | Msa0959840 | 0.811486 | 6.833915e-51 | -8.615850e-47 |
| Msa0227400 | Msa0959840 | 0.805412 | 1.351620e-49 | -8.615850e-47 |
| Msa0232320 | Msa0959840 | 0.803400 | 3.549091e-49 | -8.615850e-47 |
| Msa0370160 | Msa0959840 | -0.808590 | 2.873687e-50 | -8.615850e-47 |
| Msa0376690 | Msa0959840 | 0.802059 | 6.712630e-49 | -8.615850e-47 |
| Msa0384670 | Msa0959840 | 0.804318 | 2.287863e-49 | -8.615850e-47 |
| Msa0394400 | Msa0959840 | 0.833245 | 5.958002e-56 | -8.615850e-47 |
| Msa0402330 | Msa0959840 | 0.818563 | 1.836691e-52 | -8.615850e-47 |
| Msa0413450 | Msa0959840 | 0.816158 | 6.387821e-52 | -8.615850e-47 |
| Msa0431770 | Msa0959840 | 0.818269 | 2.140755e-52 | -8.615850e-47 |
| Msa0437690 | Msa0959840 | -0.812261 | 4.634560e-51 | -8.615850e-47 |
| Msa0439230 | Msa0959840 | 0.805374 | 1.376842e-49 | -8.615850e-47 |
| Msa0453230 | Msa0959840 | 0.815219 | 1.034104e-51 | -8.615850e-47 |
| Msa0462990 | Msa0959840 | 0.801721 | 7.876535e-49 | -8.615850e-47 |
| Msa0465550 | Msa0959840 | 0.800371 | 1.486970e-48 | -8.615850e-47 |
| Msa0471590 | Msa0959840 | 0.801578 | 8.427449e-49 | -8.615850e-47 |
| Msa0474700 | Msa0959840 | 0.812391 | 4.340158e-51 | -8.615850e-47 |
| Msa0478580 | Msa0959840 | 0.804871 | 1.754003e-49 | -8.615850e-47 |
| Msa0239450 | Msa0959840 | 0.826340 | 2.861937e-54 | -8.615850e-47 |
| Msa0259160 | Msa0959840 | 0.803830 | 2.890782e-49 | -8.615850e-47 |
| Msa0262480 | Msa0959840 | 0.807316 | 5.365832e-50 | -8.615850e-47 |
| Msa0267870 | Msa0959840 | 0.821673 | 3.563889e-53 | -8.615850e-47 |
| Msa0273650 | Msa0959840 | 0.814663 | 1.373723e-51 | -8.615850e-47 |
| Msa0280430 | Msa0959840 | 0.848641 | 5.385642e-60 | -8.615850e-47 |
| Msa0291520 | Msa0959840 | 0.828470 | 8.833236e-55 | -8.615850e-47 |
| Msa0304590 | Msa0959840 | 0.803131 | 4.036169e-49 | -8.615850e-47 |
| Msa0304660 | Msa0959840 | 0.802868 | 4.573031e-49 | -8.615850e-47 |
| Msa0308220 | Msa0959840 | 0.800787 | 1.223213e-48 | -8.615850e-47 |
| Msa0310410 | Msa0959840 | 0.814143 | 1.789698e-51 | -8.615850e-47 |
| Msa0321190 | Msa0959840 | 0.801174 | 1.019698e-48 | -8.615850e-47 |
| Msa0331700 | Msa0959840 | 0.805670 | 1.193487e-49 | -8.615850e-47 |
| Msa0343190 | Msa0959840 | 0.820435 | 6.869952e-53 | -8.615850e-47 |
| Msa0355270 | Msa0959840 | 0.818787 | 1.633841e-52 | -8.615850e-47 |
| Msa0360990 | Msa0959840 | 0.812747 | 3.628375e-51 | -8.615850e-47 |
| Msa0505150 | Msa0959840 | 0.834156 | 3.527299e-56 | -8.615850e-47 |
| Msa0509950 | Msa0959840 | -0.810166 | 1.319554e-50 | -8.615850e-47 |
| Msa0513440 | Msa0959840 | 0.806145 | 9.484204e-50 | -8.615850e-47 |
| Msa0534080 | Msa0959840 | 0.808517 | 2.979055e-50 | -8.615850e-47 |
| Msa0546360 | Msa0959840 | 0.819779 | 9.709860e-53 | -8.615850e-47 |
| Msa0552810 | Msa0959840 | 0.809974 | 1.451204e-50 | -8.615850e-47 |
| Msa0556790 | Msa0959840 | 0.816654 | 4.945939e-52 | -8.615850e-47 |
| Msa0560470 | Msa0959840 | 0.834505 | 2.882879e-56 | -8.615850e-47 |
| Msa0561430 | Msa0959840 | 0.807459 | 5.004112e-50 | -8.615850e-47 |
| Msa0571920 | Msa0959840 | 0.801175 | 1.019204e-48 | -8.615850e-47 |
| Msa0581070 | Msa0959840 | 0.838818 | 2.293310e-57 | -8.615850e-47 |
| Msa0585960 | Msa0959840 | 0.806013 | 1.011011e-49 | -8.615850e-47 |
| Msa0593700 | Msa0959840 | 0.803762 | 2.986796e-49 | -8.615850e-47 |
| Msa0600610 | Msa0959840 | 0.817991 | 2.474180e-52 | -8.615850e-47 |
| Msa0847080 | Msa0959840 | 0.823892 | 1.084297e-53 | -8.615850e-47 |
| Msa0852390 | Msa0959840 | 0.809309 | 2.016772e-50 | -8.615850e-47 |
| Msa0864010 | Msa0959840 | 0.818387 | 2.013136e-52 | -8.615850e-47 |
| Msa0869010 | Msa0959840 | 0.813721 | 2.217992e-51 | -8.615850e-47 |
| Msa0888940 | Msa0959840 | 0.820967 | 5.183281e-53 | -8.615850e-47 |
| Msa0897900 | Msa0959840 | 0.801627 | 8.236763e-49 | -8.615850e-47 |
| Msa0926460 | Msa0959840 | 0.803156 | 3.987691e-49 | -8.615850e-47 |
| Msa0928120 | Msa0959840 | 0.810030 | 1.411423e-50 | -8.615850e-47 |
| Msa0940830 | Msa0959840 | 0.803183 | 3.936829e-49 | -8.615850e-47 |
| Msa0943170 | Msa0959840 | 0.806851 | 6.729366e-50 | -8.615850e-47 |
| Msa0959840 | Msa0960830 | 0.816708 | 4.810595e-52 | -8.615850e-47 |
| Msa0959840 | Msa0963020 | 0.811846 | 5.706163e-51 | -8.615850e-47 |
| Msa0959840 | Msa0965860 | 0.803551 | 3.302289e-49 | -8.615850e-47 |
| Msa0959840 | Msa0967370 | 0.802676 | 5.009984e-49 | -8.615850e-47 |
| Msa0959840 | Msa0976330 | 0.815090 | 1.104387e-51 | -8.615850e-47 |
| Msa0959840 | Msa0980940 | 0.807931 | 3.971190e-50 | -8.615850e-47 |
| Msa0959840 | Msa0981430 | 0.809979 | 1.447709e-50 | -8.615850e-47 |
| Msa0959840 | Msa0995040 | 0.811968 | 5.367449e-51 | -8.615850e-47 |
| Msa0959840 | Msa1000690 | 0.800249 | 1.575024e-48 | -8.615850e-47 |
| Msa0959840 | Msa1004420 | 0.807355 | 5.264939e-50 | -8.615850e-47 |
| Msa0959840 | Msa1019240 | 0.820694 | 5.992314e-53 | -8.615850e-47 |
| Msa0959840 | Msa1019260 | 0.817132 | 3.864518e-52 | -8.615850e-47 |
| Msa0959840 | Msa1025940 | 0.811231 | 7.763543e-51 | -8.615850e-47 |
| Msa0959840 | Msa1030930 | 0.819229 | 1.295892e-52 | -8.615850e-47 |
| Msa0959840 | Msa1070050 | 0.821243 | 4.477196e-53 | -8.615850e-47 |
| Msa0959840 | Msa1073400 | 0.807591 | 4.691018e-50 | -8.615850e-47 |
| Msa0959840 | Msa1083880 | 0.806943 | 6.433344e-50 | -8.615850e-47 |
| Msa0959840 | Msa1093330 | 0.805865 | 1.086048e-49 | -8.615850e-47 |
| Msa0959840 | Msa1113590 | 0.802024 | 6.826177e-49 | -8.615850e-47 |
| Msa0959840 | Msa1119200 | 0.814465 | 1.519848e-51 | -8.615850e-47 |
| Msa0959840 | Msa1126510 | 0.813367 | 2.653770e-51 | -8.615850e-47 |
| Msa0959840 | Msa1126770 | 0.831777 | 1.377196e-55 | -8.615850e-47 |
| Msa0959840 | Msa1131560 | 0.805099 | 1.571986e-49 | -8.615850e-47 |
| Msa0959840 | Msa1160360 | 0.820004 | 8.625245e-53 | -8.615850e-47 |
| Msa0959840 | Msa1166870 | 0.822320 | 2.523206e-53 | -8.615850e-47 |
| Msa0959840 | Msa1174100 | 0.800345 | 1.505365e-48 | -8.615850e-47 |
| Msa0959840 | Msa1179950 | 0.812456 | 4.202130e-51 | -8.615850e-47 |
| Msa0959840 | Msa1179980 | 0.818149 | 2.278267e-52 | -8.615850e-47 |
| Msa0959840 | Msa1183660 | 0.806722 | 7.166180e-50 | -8.615850e-47 |
| Msa0959840 | Msa1184370 | 0.836698 | 8.034931e-57 | -8.615850e-47 |
| Msa0959840 | Msa1186800 | 0.816917 | 4.319101e-52 | -8.615850e-47 |
| Msa0959840 | Msa1192850 | 0.819760 | 9.805380e-53 | -8.615850e-47 |
| Msa0959840 | Msa1199290 | 0.800620 | 1.323390e-48 | -8.615850e-47 |
| Msa0959840 | Msa1201830 | 0.848804 | 4.853790e-60 | -8.615850e-47 |
| Msa0959840 | Msa1207730 | 0.804855 | 1.767556e-49 | -8.615850e-47 |
| Msa0959840 | Msa1211830 | 0.819846 | 9.370711e-53 | -8.615850e-47 |
| Msa0959840 | Msa1227690 | 0.851273 | 9.878492e-61 | -8.615850e-47 |
| Msa0959840 | Msa1254710 | 0.814262 | 1.685242e-51 | -8.615850e-47 |
| Msa0959840 | Msa1269300 | 0.802722 | 4.901495e-49 | -8.615850e-47 |
| Msa0959840 | Msa1270620 | 0.817554 | 3.104796e-52 | -8.615850e-47 |
| Msa0959840 | Msa1270690 | 0.813740 | 2.196155e-51 | -8.615850e-47 |
| Msa0959840 | Msa1271580 | 0.809188 | 2.140816e-50 | -8.615850e-47 |
| Msa0959840 | Msa1286510 | 0.830651 | 2.605297e-55 | -8.615850e-47 |
| Msa0959840 | Msa1294840 | 0.830447 | 2.921736e-55 | -8.615850e-47 |
| Msa0959840 | Msa1294960 | 0.814360 | 1.603051e-51 | -8.615850e-47 |
| Msa0959840 | Msa1299360 | 0.811259 | 7.655115e-51 | -8.615850e-47 |
| Msa0959840 | Msa1306990 | 0.822850 | 1.899727e-53 | -8.615850e-47 |
| Msa0959840 | Msa1307950 | 0.828458 | 8.889975e-55 | -8.615850e-47 |
| Msa0959840 | Msa1310690 | 0.810360 | 1.198040e-50 | -8.615850e-47 |
| Msa0959840 | Msa1327490 | 0.813610 | 2.346577e-51 | -8.615850e-47 |
| Msa0959840 | Msa1335940 | 0.814689 | 1.355902e-51 | -8.615850e-47 |
| Msa0959840 | Msa1344850 | 0.827283 | 1.704170e-54 | -8.615850e-47 |
| Msa0959840 | Msa1345450 | 0.807643 | 4.571830e-50 | -8.615850e-47 |
| Msa0959840 | Msa1365150 | 0.828248 | 9.993184e-55 | -8.615850e-47 |
| Msa0959840 | Msa1367880 | 0.815653 | 8.279365e-52 | -8.615850e-47 |
| Msa0959840 | Msa1370860 | 0.806148 | 9.466569e-50 | -8.615850e-47 |
| Msa0959840 | Msa1372310 | 0.802474 | 5.514867e-49 | -8.615850e-47 |
| Msa0959840 | Msa1376650 | 0.800504 | 1.396973e-48 | -8.615850e-47 |
| Msa0959840 | Msa1380970 | 0.813909 | 2.015773e-51 | -8.615850e-47 |
| Msa0959840 | Msa1383350 | 0.801509 | 8.706902e-49 | -8.615850e-47 |
| Msa0959840 | Msa1387190 | 0.800626 | 1.319700e-48 | -8.615850e-47 |
| Msa0959840 | Msa1397810 | 0.800668 | 1.293566e-48 | -8.615850e-47 |
| Msa0959840 | Msa1397940 | 0.845055 | 5.155572e-59 | -8.615850e-47 |
| Msa0959840 | Msa1398860 | 0.802989 | 4.318626e-49 | -8.615850e-47 |
| Msa0959840 | Msa1404190 | 0.823912 | 1.072616e-53 | -8.615850e-47 |
| Msa0959840 | Msa1425340 | 0.801491 | 8.780835e-49 | -8.615850e-47 |
| Msa0959840 | Msa1426920 | 0.803750 | 3.003288e-49 | -8.615850e-47 |
| Msa0959840 | Msa1431040 | 0.802762 | 4.809936e-49 | -8.615850e-47 |
| Msa0959840 | Msa1438640 | 0.834495 | 2.899975e-56 | -8.615850e-47 |
| Msa0959840 | Msa1442850 | 0.825499 | 4.534546e-54 | -8.615850e-47 |
| Msa0959840 | Msa1450280 | 0.815849 | 7.488227e-52 | -8.615850e-47 |
| Msa0959840 | Msa1459960 | 0.815310 | 9.868776e-52 | -8.615850e-47 |
| Msa0959840 | Msa1465080 | 0.816368 | 5.733874e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959840 | MtrunA17_Chr6g0478021 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 2.24e-78 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959840 | AT5G51960.2 | 60.000 | 110 | 37 | 1 | 1 | 110 | 1 | 103 | 2.41e-42 | 134 |
| Msa0959840 | AT5G51960.1 | 60.000 | 110 | 37 | 1 | 1 | 110 | 1 | 103 | 2.41e-42 | 134 |
Find 42 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTATACTTATATGCTTAA+TGG | 0.190532 | 6_3:+77538440 | Msa0959840:CDS |
| GTGTTGTAGGACTTTGTTTC+AGG | 0.204929 | 6_3:+77539255 | Msa0959840:three_prime_UTR |
| AGTTCGTTACTGAATGAAAA+TGG | 0.262964 | 6_3:+77539099 | Msa0959840:three_prime_UTR |
| CCCTTGCAGGAAGTAGGTTT+TGG | 0.271570 | 6_3:+77538221 | Msa0959840:intron |
| AACTATTGCCATTGTGTTGT+AGG | 0.332123 | 6_3:+77539242 | Msa0959840:three_prime_UTR |
| AAGGCGGTCAAGAAACATAT+TGG | 0.364646 | 6_3:+77538308 | Msa0959840:CDS |
| GGCGATAGATGTTAACTGTT+TGG | 0.367879 | 6_3:-77538277 | None:intergenic |
| ACAATGGCAATAGTTCTTAC+TGG | 0.401403 | 6_3:-77539234 | None:intergenic |
| AAGTAAGGATCTTTCCTTTG+AGG | 0.413087 | 6_3:+77536173 | Msa0959840:five_prime_UTR |
| GCACGAAAGCCCTTTCTTTG+TGG | 0.415179 | 6_3:-77539033 | None:intergenic |
| CTTTGTACTTCCACAAAGAA+AGG | 0.418152 | 6_3:+77539023 | Msa0959840:three_prime_UTR |
| CCAATCAAAACAAAATCAAC+TGG | 0.418680 | 6_3:-77539075 | None:intergenic |
| AATGTCGAATCATGTTCATA+AGG | 0.422294 | 6_3:+77539324 | Msa0959840:three_prime_UTR |
| TCTTGACCGCCTTGAGAAGA+TGG | 0.432707 | 6_3:-77538298 | None:intergenic |
| AATAGCGGCAGAAAACAAAT+AGG | 0.434385 | 6_3:+77536114 | Msa0959840:five_prime_UTR |
| ATGTCGAATCATGTTCATAA+GGG | 0.452510 | 6_3:+77539325 | Msa0959840:three_prime_UTR |
| GTTACTGAATGAAAATGGTT+TGG | 0.457234 | 6_3:+77539104 | Msa0959840:three_prime_UTR |
| AGGCGGTCAAGAAACATATT+GGG | 0.477390 | 6_3:+77538309 | Msa0959840:CDS |
| CCTCGGAGTTCCACAAGAAT+CGG | 0.490759 | 6_3:+77538369 | Msa0959840:CDS |
| ATCGTGAGGAACAAGAAGTA+AGG | 0.516190 | 6_3:+77536158 | Msa0959840:five_prime_UTR |
| TTTGTACTTCCACAAAGAAA+GGG | 0.517621 | 6_3:+77539024 | Msa0959840:three_prime_UTR |
| ATAGATGTTAACTGTTTGGA+AGG | 0.518205 | 6_3:-77538273 | None:intergenic |
| TGTCATCCCTTGCAGGAAGT+AGG | 0.539179 | 6_3:+77538215 | Msa0959840:intron |
| CATTATGATTGATAAACCTC+AGG | 0.553941 | 6_3:-77538964 | None:intergenic |
| ATGATTCGACATTTAGAGCA+TGG | 0.554156 | 6_3:-77539314 | None:intergenic |
| TGTTGGTCTTCAGCTTCCTG+AGG | 0.560132 | 6_3:+77538948 | Msa0959840:CDS |
| CAGACAGATTCCGATTCTTG+TGG | 0.562091 | 6_3:-77538379 | None:intergenic |
| GGAAAATCTGCTGCAAGTGT+TGG | 0.562393 | 6_3:+77538931 | Msa0959840:CDS |
| AGTAAGAACGGCCACCTCAA+AGG | 0.566913 | 6_3:-77536187 | None:intergenic |
| CATCTATCGCCATCTTCTCA+AGG | 0.575149 | 6_3:+77538289 | Msa0959840:CDS |
| AATGAAGTGAAAAGAACACT+TGG | 0.586563 | 6_3:+77538910 | Msa0959840:CDS |
| CTTTCTTTGTGGAAGTACAA+AGG | 0.586883 | 6_3:-77539022 | None:intergenic |
| TCGGAATCTGTCTGATGGTG+TGG | 0.587780 | 6_3:+77538388 | Msa0959840:CDS |
| AAGAATCGGAATCTGTCTGA+TGG | 0.612539 | 6_3:+77538383 | Msa0959840:CDS |
| AACAAGGCAATACCTTGTGA+TGG | 0.614812 | 6_3:-77538469 | None:intergenic |
| TAATGGTGTGCACCATCACA+AGG | 0.617495 | 6_3:+77538457 | Msa0959840:CDS |
| CCGATTCTTGTGGAACTCCG+AGG | 0.631297 | 6_3:-77538369 | None:intergenic |
| GCAGAGACAGTGAAATCGTG+AGG | 0.652694 | 6_3:+77536144 | Msa0959840:five_prime_UTR |
| AGTAAACAGAATCCTAATAG+CGG | 0.674851 | 6_3:+77536099 | None:intergenic |
| AACAAAGTCCTACAACACAA+TGG | 0.714204 | 6_3:-77539250 | None:intergenic |
| CTATCGCCATCTTCTCAAGG+CGG | 0.739647 | 6_3:+77538292 | Msa0959840:CDS |
| AAGAGGAGGAAGCATCACAG+CGG | 0.771684 | 6_3:+77539161 | Msa0959840:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTTTATTTTGTTG+TGG | + | chr6_3:77536264-77536283 | Msa0959840:intron | 15.0% |
| !!! | GTTTTTTTTTATTTTGTTGT+GGG | + | chr6_3:77536265-77536284 | Msa0959840:intron | 15.0% |
| !!! | TCTATTTTTTTGGAAATTTT+CGG | + | chr6_3:77536866-77536885 | Msa0959840:intron | 15.0% |
| !! | ACTAAAAAAACAAGTAAGAA+CGG | - | chr6_3:77536202-77536221 | None:intergenic | 20.0% |
| !! | ACATGATTAATAAAATGTTG+TGG | + | chr6_3:77536649-77536668 | Msa0959840:intron | 20.0% |
| !! | CATGATTAATAAAATGTTGT+GGG | + | chr6_3:77536650-77536669 | Msa0959840:intron | 20.0% |
| !! | GAAAATTTCCAAAAAAATAG+AGG | - | chr6_3:77536867-77536886 | None:intergenic | 20.0% |
| !!! | CTATTTTTTTGGAAATTTTC+GGG | + | chr6_3:77536867-77536886 | Msa0959840:intron | 20.0% |
| !! | AATCATGAAACTTAAAATAG+AGG | + | chr6_3:77537695-77537714 | Msa0959840:intron | 20.0% |
| !! | AATCACTTCAATTATATTTG+GGG | - | chr6_3:77537877-77537896 | None:intergenic | 20.0% |
| !! | CAATCACTTCAATTATATTT+GGG | - | chr6_3:77537878-77537897 | None:intergenic | 20.0% |
| !! | TCAATCACTTCAATTATATT+TGG | - | chr6_3:77537879-77537898 | None:intergenic | 20.0% |
| !! | AAACTAAGAACCTAAAAAAT+GGG | - | chr6_3:77538146-77538165 | None:intergenic | 20.0% |
| !! | AAAACTAAGAACCTAAAAAA+TGG | - | chr6_3:77538147-77538166 | None:intergenic | 20.0% |
| !!! | TTTGGAATAGAACAAAATTT+AGG | - | chr6_3:77538193-77538212 | None:intergenic | 20.0% |
| !!! | TTTTTTAGAATTTGTAACCT+CGG | + | chr6_3:77538352-77538371 | Msa0959840:CDS | 20.0% |
| !! | GATTATACTTATATGCTTAA+TGG | + | chr6_3:77538440-77538459 | Msa0959840:CDS | 20.0% |
| !! | TATTGCAAAATAAAAGTAAG+AGG | + | chr6_3:77538626-77538645 | Msa0959840:intron | 20.0% |
| !!! | TGTGTTAATTTTTGAATGTA+TGG | + | chr6_3:77538993-77539012 | Msa0959840:three_prime_UTR | 20.0% |
| ! | TTAATAAAATGTTGTGGGAA+TGG | + | chr6_3:77536655-77536674 | Msa0959840:intron | 25.0% |
| ! | AAGAAAATTGCAAACAGAAA+CGG | - | chr6_3:77536776-77536795 | None:intergenic | 25.0% |
| !! | TGCAATTTTCTTCACTATTT+TGG | + | chr6_3:77536784-77536803 | Msa0959840:intron | 25.0% |
| ! | AATGATTCAAAGTATAAGCA+TGG | + | chr6_3:77536813-77536832 | Msa0959840:intron | 25.0% |
| ! | ACATGTTAACGTTTATTGAT+GGG | - | chr6_3:77537472-77537491 | None:intergenic | 25.0% |
| ! | AGAAAAAAGTAGAAGATAGA+AGG | + | chr6_3:77537634-77537653 | Msa0959840:intron | 25.0% |
| !! | TTTATTTCTTCACTCATTCT+TGG | + | chr6_3:77538001-77538020 | Msa0959840:intron | 25.0% |
| !! | TTATTTCTTCACTCATTCTT+GGG | + | chr6_3:77538002-77538021 | Msa0959840:intron | 25.0% |
| ! | GTAAGGAAAAAAAGAAAGTA+AGG | - | chr6_3:77538034-77538053 | None:intergenic | 25.0% |
| ! | AAATTGTATCTCTTTCATCT+TGG | + | chr6_3:77538101-77538120 | Msa0959840:intron | 25.0% |
| !!! | TCTTAGTTTTTCTTTTTCTC+TGG | + | chr6_3:77538157-77538176 | Msa0959840:intron | 25.0% |
| ! | GGGAAAATACAATAAAAACA+AGG | - | chr6_3:77538488-77538507 | None:intergenic | 25.0% |
| ! | AATACAAGTGATTGTTTGAA+GGG | - | chr6_3:77538508-77538527 | None:intergenic | 25.0% |
| ! | AAAATCAGCCAAATAAAATG+TGG | - | chr6_3:77538819-77538838 | None:intergenic | 25.0% |
| ! | TGAAAACTTCAACTAAAAAG+AGG | + | chr6_3:77539144-77539163 | Msa0959840:three_prime_UTR | 25.0% |
| !! | CAACCTTCATAAGTTGTTTT+CGG | - | chr6_3:77536456-77536475 | None:intergenic | 30.0% |
| AAGCTGAAAACAACTTATGA+AGG | + | chr6_3:77536521-77536540 | Msa0959840:intron | 30.0% | |
| TGATATAGCCATTCAATCTA+TGG | + | chr6_3:77536619-77536638 | Msa0959840:intron | 30.0% | |
| GATATAGCCATTCAATCTAT+GGG | + | chr6_3:77536620-77536639 | Msa0959840:intron | 30.0% | |
| !! | GTATGAAATTTGGTACTGAT+TGG | + | chr6_3:77536679-77536698 | Msa0959840:intron | 30.0% |
| AACATAAGCATCTCATTTGA+GGG | - | chr6_3:77536717-77536736 | None:intergenic | 30.0% | |
| TTATGTTGCATGCTTATTGT+TGG | + | chr6_3:77536730-77536749 | Msa0959840:intron | 30.0% | |
| !!! | TTTTTTGGAAATTTTCGGGA+AGG | + | chr6_3:77536871-77536890 | Msa0959840:intron | 30.0% |
| ATTCCATCATCAAACTATCT+AGG | - | chr6_3:77536944-77536963 | None:intergenic | 30.0% | |
| ATCTAAGTAATTCACTCATC+AGG | - | chr6_3:77536976-77536995 | None:intergenic | 30.0% | |
| TAGATACTGAGAGATTTCAT+TGG | + | chr6_3:77536991-77537010 | Msa0959840:intron | 30.0% | |
| ACATGTCTCTTCTTAGAATT+TGG | + | chr6_3:77537058-77537077 | Msa0959840:intron | 30.0% | |
| CATGTCTCTTCTTAGAATTT+GGG | + | chr6_3:77537059-77537078 | Msa0959840:intron | 30.0% | |
| ATGGCTCAATAAATCTTGAA+TGG | + | chr6_3:77537191-77537210 | Msa0959840:intron | 30.0% | |
| TGGCTCAATAAATCTTGAAT+GGG | + | chr6_3:77537192-77537211 | Msa0959840:intron | 30.0% | |
| TTTCACTCCATCTTAGAATT+TGG | + | chr6_3:77537216-77537235 | Msa0959840:intron | 30.0% | |
| TTCACTCCATCTTAGAATTT+GGG | + | chr6_3:77537217-77537236 | Msa0959840:intron | 30.0% | |
| AAACTCAACCATTACAAAAC+CGG | + | chr6_3:77537247-77537266 | Msa0959840:intron | 30.0% | |
| TGAATACGTGTTTATAAGTG+GGG | - | chr6_3:77537292-77537311 | None:intergenic | 30.0% | |
| CTGAATACGTGTTTATAAGT+GGG | - | chr6_3:77537293-77537312 | None:intergenic | 30.0% | |
| ACACTGTTCATTCAATTCTA+TGG | - | chr6_3:77537403-77537422 | None:intergenic | 30.0% | |
| CACATGTTAACGTTTATTGA+TGG | - | chr6_3:77537473-77537492 | None:intergenic | 30.0% | |
| AATAAACGTTAACATGTGCT+TGG | + | chr6_3:77537475-77537494 | Msa0959840:intron | 30.0% | |
| ATGGGAAGAATTATCATTCA+CGG | - | chr6_3:77537533-77537552 | None:intergenic | 30.0% | |
| ATGATAATTCTTCCCATTCA+AGG | + | chr6_3:77537536-77537555 | Msa0959840:intron | 30.0% | |
| TTGATCTTCATACAAATCCT+AGG | - | chr6_3:77537577-77537596 | None:intergenic | 30.0% | |
| TTGTATGAAGATCAATGTAG+TGG | + | chr6_3:77537582-77537601 | Msa0959840:intron | 30.0% | |
| ACAAAAAAATCCTCCATCAA+CGG | - | chr6_3:77537761-77537780 | None:intergenic | 30.0% | |
| TATGTAATGAGCTGATTGAA+TGG | + | chr6_3:77537816-77537835 | Msa0959840:intron | 30.0% | |
| ATGTAATGAGCTGATTGAAT+GGG | + | chr6_3:77537817-77537836 | Msa0959840:intron | 30.0% | |
| ! | CAATTATATTTGGGGTAATC+AGG | - | chr6_3:77537869-77537888 | None:intergenic | 30.0% |
| ! | TTTTCGAATCCAATATACAG+AGG | + | chr6_3:77537937-77537956 | Msa0959840:intron | 30.0% |
| AAAGACAGTTTCACATAGTA+AGG | - | chr6_3:77537973-77537992 | None:intergenic | 30.0% | |
| ! | TTTCTTTTTCTCTGGTAACA+AGG | + | chr6_3:77538165-77538184 | Msa0959840:intron | 30.0% |
| ATAGATGTTAACTGTTTGGA+AGG | - | chr6_3:77538276-77538295 | None:intergenic | 30.0% | |
| CAATACAAGTGATTGTTTGA+AGG | - | chr6_3:77538509-77538528 | None:intergenic | 30.0% | |
| TTATAATACTACATCTGCAG+AGG | - | chr6_3:77538727-77538746 | None:intergenic | 30.0% | |
| CTGCAGATGTAGTATTATAA+TGG | + | chr6_3:77538727-77538746 | Msa0959840:intron | 30.0% | |
| GTCTAGTGTAAATCATTACT+AGG | + | chr6_3:77538787-77538806 | Msa0959840:intron | 30.0% | |
| ! | GGAAAAAGCCACATTTTATT+TGG | + | chr6_3:77538808-77538827 | Msa0959840:intron | 30.0% |
| AGATTGTTGACAATGATTCA+TGG | - | chr6_3:77538846-77538865 | None:intergenic | 30.0% | |
| AATGAAGTGAAAAGAACACT+TGG | + | chr6_3:77538910-77538929 | Msa0959840:CDS | 30.0% | |
| CATTATGATTGATAAACCTC+AGG | - | chr6_3:77538967-77538986 | None:intergenic | 30.0% | |
| TTTGTACTTCCACAAAGAAA+GGG | + | chr6_3:77539024-77539043 | Msa0959840:three_prime_UTR | 30.0% | |
| CCAATCAAAACAAAATCAAC+TGG | - | chr6_3:77539078-77539097 | None:intergenic | 30.0% | |
| !!! | CCAGTTGATTTTGTTTTGAT+TGG | + | chr6_3:77539075-77539094 | Msa0959840:three_prime_UTR | 30.0% |
| AGTTCGTTACTGAATGAAAA+TGG | + | chr6_3:77539099-77539118 | Msa0959840:three_prime_UTR | 30.0% | |
| GTTACTGAATGAAAATGGTT+TGG | + | chr6_3:77539104-77539123 | Msa0959840:three_prime_UTR | 30.0% | |
| AAACTTCAACTAAAAAGAGG+AGG | + | chr6_3:77539147-77539166 | Msa0959840:three_prime_UTR | 30.0% | |
| !!! | TTAGTTGCTTTTAAGAGACA+TGG | - | chr6_3:77539292-77539311 | None:intergenic | 30.0% |
| AATGTCGAATCATGTTCATA+AGG | + | chr6_3:77539324-77539343 | Msa0959840:three_prime_UTR | 30.0% | |
| ATGTCGAATCATGTTCATAA+GGG | + | chr6_3:77539325-77539344 | Msa0959840:three_prime_UTR | 30.0% | |
| ! | TCTTTTACAGATGTTTGCAA+TGG | + | chr6_3:77539381-77539400 | Msa0959840:three_prime_UTR | 30.0% |
| !! | ATTTGTTTTCTGCCGCTATT+AGG | - | chr6_3:77536114-77536133 | None:intergenic | 35.0% |
| AATAGCGGCAGAAAACAAAT+AGG | + | chr6_3:77536114-77536133 | Msa0959840:five_prime_UTR | 35.0% | |
| AAGTAAGGATCTTTCCTTTG+AGG | + | chr6_3:77536173-77536192 | Msa0959840:five_prime_UTR | 35.0% | |
| TAAGCGTGCATCATGATAAA+TGG | + | chr6_3:77536333-77536352 | Msa0959840:intron | 35.0% | |
| AAGCGTGCATCATGATAAAT+GGG | + | chr6_3:77536334-77536353 | Msa0959840:intron | 35.0% | |
| AAGCCGAAAACAACTTATGA+AGG | + | chr6_3:77536450-77536469 | Msa0959840:intron | 35.0% | |
| TGGGAATGGTGTATGAAATT+TGG | + | chr6_3:77536669-77536688 | Msa0959840:intron | 35.0% | |
| CAACATAAGCATCTCATTTG+AGG | - | chr6_3:77536718-77536737 | None:intergenic | 35.0% | |
| GACTTGATGTTGAATGTGTT+AGG | + | chr6_3:77536835-77536854 | Msa0959840:intron | 35.0% | |
| !!! | GGAATCTGCCTCTATTTTTT+TGG | + | chr6_3:77536856-77536875 | Msa0959840:intron | 35.0% |
| ! | CATACAATGTTCACCTCTTT+TGG | - | chr6_3:77536905-77536924 | None:intergenic | 35.0% |
| CTTCCTAGATAGTTTGATGA+TGG | + | chr6_3:77536938-77536957 | Msa0959840:intron | 35.0% | |
| TCTCTTCTTAGAATTTGGGT+TGG | + | chr6_3:77537063-77537082 | Msa0959840:intron | 35.0% | |
| ACATTAGTAGGGATTGAGTT+AGG | - | chr6_3:77537090-77537109 | None:intergenic | 35.0% | |
| AACTCAATCCCTACTAATGT+CGG | + | chr6_3:77537090-77537109 | Msa0959840:intron | 35.0% | |
| TTAAGAGTCCGACATTAGTA+GGG | - | chr6_3:77537101-77537120 | None:intergenic | 35.0% | |
| ! | TCCATCTTAGAATTTGGGTT+GGG | + | chr6_3:77537222-77537241 | Msa0959840:intron | 35.0% |
| !! | GGTTTTGTAATGGTTGAGTT+TGG | - | chr6_3:77537248-77537267 | None:intergenic | 35.0% |
| GAATACGTGTTTATAAGTGG+GGG | - | chr6_3:77537291-77537310 | None:intergenic | 35.0% | |
| CCTGAATACGTGTTTATAAG+TGG | - | chr6_3:77537294-77537313 | None:intergenic | 35.0% | |
| CCACTTATAAACACGTATTC+AGG | + | chr6_3:77537291-77537310 | Msa0959840:intron | 35.0% | |
| AGATGTTAAGAGTCCTACAT+TGG | - | chr6_3:77537328-77537347 | None:intergenic | 35.0% | |
| ! | ATGGACTGATCAAACCTTTA+AGG | - | chr6_3:77537384-77537403 | None:intergenic | 35.0% |
| AAGAATTATCATTCACGGGT+AGG | - | chr6_3:77537528-77537547 | None:intergenic | 35.0% | |
| TGGGAAGAATTATCATTCAC+GGG | - | chr6_3:77537532-77537551 | None:intergenic | 35.0% | |
| GTGTTTGTTTCACCTTGAAT+GGG | - | chr6_3:77537551-77537570 | None:intergenic | 35.0% | |
| TCTTCATACAAATCCTAGGT+TGG | - | chr6_3:77537573-77537592 | None:intergenic | 35.0% | |
| TGATTAATCAACCAAACTGC+CGG | - | chr6_3:77537612-77537631 | None:intergenic | 35.0% | |
| AAAGTAGAAGATAGAAGGAG+TGG | + | chr6_3:77537639-77537658 | Msa0959840:intron | 35.0% | |
| AGAAACCAGATATCTATACG+TGG | + | chr6_3:77537722-77537741 | Msa0959840:intron | 35.0% | |
| CAAAAAAATCCTCCATCAAC+GGG | - | chr6_3:77537760-77537779 | None:intergenic | 35.0% | |
| ! | TATATTTGGGGTAATCAGGT+GGG | - | chr6_3:77537865-77537884 | None:intergenic | 35.0% |
| ! | TTATATTTGGGGTAATCAGG+TGG | - | chr6_3:77537866-77537885 | None:intergenic | 35.0% |
| GAATCCAATATACAGAGGAA+TGG | + | chr6_3:77537942-77537961 | Msa0959840:intron | 35.0% | |
| TCATCCATTCCTCTGTATAT+TGG | - | chr6_3:77537949-77537968 | None:intergenic | 35.0% | |
| GAGATCAAAGAAGGATTGTA+AGG | - | chr6_3:77538051-77538070 | None:intergenic | 35.0% | |
| ACAGTTAGAGAGATCAAAGA+AGG | - | chr6_3:77538060-77538079 | None:intergenic | 35.0% | |
| GAACCTAAAAAATGGGACAA+GGG | - | chr6_3:77538139-77538158 | None:intergenic | 35.0% | |
| AGAACCTAAAAAATGGGACA+AGG | - | chr6_3:77538140-77538159 | None:intergenic | 35.0% | |
| !!! | GAGCAAGCTTTATTTTCTGT+TGG | - | chr6_3:77538418-77538437 | None:intergenic | 35.0% |
| AGTCTGTACATTGTTCTGAT+TGG | + | chr6_3:77538532-77538551 | Msa0959840:intron | 35.0% | |
| ! | CATTGTTCTGATTGGTCAAA+TGG | + | chr6_3:77538540-77538559 | Msa0959840:intron | 35.0% |
| ! | AAAAGTAAGAGGTGTAGAAG+AGG | + | chr6_3:77538637-77538656 | Msa0959840:intron | 35.0% |
| ATCATTGTCAACAATCTTGC+AGG | + | chr6_3:77538849-77538868 | Msa0959840:intron | 35.0% | |
| ! | CTTTCTTTGTGGAAGTACAA+AGG | - | chr6_3:77539025-77539044 | None:intergenic | 35.0% |
| CTTTGTACTTCCACAAAGAA+AGG | + | chr6_3:77539023-77539042 | Msa0959840:three_prime_UTR | 35.0% | |
| ACAATGGCAATAGTTCTTAC+TGG | - | chr6_3:77539237-77539256 | None:intergenic | 35.0% | |
| AACTATTGCCATTGTGTTGT+AGG | + | chr6_3:77539242-77539261 | Msa0959840:three_prime_UTR | 35.0% | |
| AACAAAGTCCTACAACACAA+TGG | - | chr6_3:77539253-77539272 | None:intergenic | 35.0% | |
| ! | ATGATTCGACATTTAGAGCA+TGG | - | chr6_3:77539317-77539336 | None:intergenic | 35.0% |
| ATCGTGAGGAACAAGAAGTA+AGG | + | chr6_3:77536158-77536177 | Msa0959840:five_prime_UTR | 40.0% | |
| ! | TAAGGATCTTTCCTTTGAGG+TGG | + | chr6_3:77536176-77536195 | Msa0959840:intron | 40.0% |
| TAGACTGCCCATAGATTGAA+TGG | - | chr6_3:77536630-77536649 | None:intergenic | 40.0% | |
| GTTAAGAGTCCGACATTAGT+AGG | - | chr6_3:77537102-77537121 | None:intergenic | 40.0% | |
| !! | CGTTTTAGATGTCTAGTCCT+GGG | - | chr6_3:77537139-77537158 | None:intergenic | 40.0% |
| !! | ACGTTTTAGATGTCTAGTCC+TGG | - | chr6_3:77537140-77537159 | None:intergenic | 40.0% |
| ! | CTAGACATCTAAAACGTGAC+CGG | + | chr6_3:77537143-77537162 | Msa0959840:intron | 40.0% |
| ! | TAGACATCTAAAACGTGACC+GGG | + | chr6_3:77537144-77537163 | Msa0959840:intron | 40.0% |
| ATATGCAAGTTACCGTTACC+GGG | - | chr6_3:77537173-77537192 | None:intergenic | 40.0% | |
| CATATGCAAGTTACCGTTAC+CGG | - | chr6_3:77537174-77537193 | None:intergenic | 40.0% | |
| CTCCATCTTAGAATTTGGGT+TGG | + | chr6_3:77537221-77537240 | Msa0959840:intron | 40.0% | |
| !! | CATACAAGCCGGTTTTGTAA+TGG | - | chr6_3:77537258-77537277 | None:intergenic | 40.0% |
| !! | CATTACAAAACCGGCTTGTA+TGG | + | chr6_3:77537256-77537275 | Msa0959840:intron | 40.0% |
| GGTCATATCTCATCCAATGT+AGG | + | chr6_3:77537312-77537331 | Msa0959840:intron | 40.0% | |
| !! | CAAACCTTTAAGGTCAGGAA+AGG | - | chr6_3:77537374-77537393 | None:intergenic | 40.0% |
| !! | CTGATCAAACCTTTAAGGTC+AGG | - | chr6_3:77537379-77537398 | None:intergenic | 40.0% |
| GGTGTTTGTTTCACCTTGAA+TGG | - | chr6_3:77537552-77537571 | None:intergenic | 40.0% | |
| ! | AGATCAATGTAGTGGAGATC+CGG | + | chr6_3:77537590-77537609 | Msa0959840:intron | 40.0% |
| GAACTCCACGTATAGATATC+TGG | - | chr6_3:77537730-77537749 | None:intergenic | 40.0% | |
| TTTCTTCACTCATTCTTGGG+AGG | + | chr6_3:77538005-77538024 | Msa0959840:intron | 40.0% | |
| !!! | ACACCCTTGTCCCATTTTTT+AGG | + | chr6_3:77538133-77538152 | Msa0959840:intron | 40.0% |
| GGCGATAGATGTTAACTGTT+TGG | - | chr6_3:77538280-77538299 | None:intergenic | 40.0% | |
| AAGGCGGTCAAGAAACATAT+TGG | + | chr6_3:77538308-77538327 | Msa0959840:CDS | 40.0% | |
| AGGCGGTCAAGAAACATATT+GGG | + | chr6_3:77538309-77538328 | Msa0959840:CDS | 40.0% | |
| AAGAATCGGAATCTGTCTGA+TGG | + | chr6_3:77538383-77538402 | Msa0959840:CDS | 40.0% | |
| AACAAGGCAATACCTTGTGA+TGG | - | chr6_3:77538472-77538491 | None:intergenic | 40.0% | |
| GAAATTCAGCATAGCCAAGT+TGG | + | chr6_3:77538689-77538708 | Msa0959840:intron | 40.0% | |
| ATACTACATCTGCAGAGGAT+TGG | - | chr6_3:77538722-77538741 | None:intergenic | 40.0% | |
| ! | GTGTTGTAGGACTTTGTTTC+AGG | + | chr6_3:77539255-77539274 | Msa0959840:three_prime_UTR | 40.0% |
| GAAGGTTTGAGTGCCAAAAG+AGG | + | chr6_3:77536889-77536908 | Msa0959840:intron | 45.0% | |
| ! | CGGTAACGGTAACTTGCATA+TGG | + | chr6_3:77537172-77537191 | Msa0959840:intron | 45.0% |
| ! | GCCCAACCCAAATTCTAAGA+TGG | - | chr6_3:77537226-77537245 | None:intergenic | 45.0% |
| GAGACCTTTCCTGACCTTAA+AGG | + | chr6_3:77537367-77537386 | Msa0959840:intron | 45.0% | |
| GGTGAAACAAACACCAACCT+AGG | + | chr6_3:77537557-77537576 | Msa0959840:intron | 45.0% | |
| AAAATCCTCCATCAACGGGA+AGG | - | chr6_3:77537756-77537775 | None:intergenic | 45.0% | |
| CCTGCAAGGGATGACATATT+TGG | - | chr6_3:77538211-77538230 | None:intergenic | 45.0% | |
| CCAAATATGTCATCCCTTGC+AGG | + | chr6_3:77538208-77538227 | Msa0959840:intron | 45.0% | |
| CCAAAACCTACTTCCTGCAA+GGG | - | chr6_3:77538224-77538243 | None:intergenic | 45.0% | |
| TCCAAAACCTACTTCCTGCA+AGG | - | chr6_3:77538225-77538244 | None:intergenic | 45.0% | |
| CATCTATCGCCATCTTCTCA+AGG | + | chr6_3:77538289-77538308 | Msa0959840:CDS | 45.0% | |
| CAGACAGATTCCGATTCTTG+TGG | - | chr6_3:77538382-77538401 | None:intergenic | 45.0% | |
| TAATGGTGTGCACCATCACA+AGG | + | chr6_3:77538457-77538476 | Msa0959840:CDS | 45.0% | |
| !! | GGATTGGCTTGAATCCAACT+TGG | - | chr6_3:77538706-77538725 | None:intergenic | 45.0% |
| GGAAAATCTGCTGCAAGTGT+TGG | + | chr6_3:77538931-77538950 | Msa0959840:CDS | 45.0% | |
| GCAGAGACAGTGAAATCGTG+AGG | + | chr6_3:77536144-77536163 | Msa0959840:five_prime_UTR | 50.0% | |
| AGTAAGAACGGCCACCTCAA+AGG | - | chr6_3:77536190-77536209 | None:intergenic | 50.0% | |
| ! | ACATCTAAAACGTGACCGGG+TGG | + | chr6_3:77537147-77537166 | Msa0959840:intron | 50.0% |
| !! | CAAAACCGGCTTGTATGGTG+AGG | + | chr6_3:77537261-77537280 | Msa0959840:intron | 50.0% |
| GTTGTCCTCACCATACAAGC+CGG | - | chr6_3:77537269-77537288 | None:intergenic | 50.0% | |
| GAATGTTGATCAGTAGCCGC+AGG | + | chr6_3:77537434-77537453 | Msa0959840:intron | 50.0% | |
| AGATAGAAGGAGTGGTGCTC+TGG | + | chr6_3:77537647-77537666 | Msa0959840:intron | 50.0% | |
| ! | AGTTCTGACCTTCCCGTTGA+TGG | + | chr6_3:77537745-77537764 | Msa0959840:intron | 50.0% |
| TGTCATCCCTTGCAGGAAGT+AGG | + | chr6_3:77538215-77538234 | Msa0959840:intron | 50.0% | |
| ! | CCCTTGCAGGAAGTAGGTTT+TGG | + | chr6_3:77538221-77538240 | Msa0959840:intron | 50.0% |
| CTATCGCCATCTTCTCAAGG+CGG | + | chr6_3:77538292-77538311 | Msa0959840:CDS | 50.0% | |
| TCTTGACCGCCTTGAGAAGA+TGG | - | chr6_3:77538301-77538320 | None:intergenic | 50.0% | |
| CCTCGGAGTTCCACAAGAAT+CGG | + | chr6_3:77538369-77538388 | Msa0959840:CDS | 50.0% | |
| ! | TCGGAATCTGTCTGATGGTG+TGG | + | chr6_3:77538388-77538407 | Msa0959840:CDS | 50.0% |
| !! | TGTTGGTCTTCAGCTTCCTG+AGG | + | chr6_3:77538948-77538967 | Msa0959840:CDS | 50.0% |
| GCACGAAAGCCCTTTCTTTG+TGG | - | chr6_3:77539036-77539055 | None:intergenic | 50.0% | |
| !! | AAGAGGAGGAAGCATCACAG+CGG | + | chr6_3:77539161-77539180 | Msa0959840:three_prime_UTR | 50.0% |
| TCTAGTCCTGGGCATGAGGA+GGG | - | chr6_3:77537128-77537147 | None:intergenic | 55.0% | |
| GATGTCTAGTCCTGGGCATG+AGG | - | chr6_3:77537132-77537151 | None:intergenic | 55.0% | |
| !! | TGGGAGCATCAAGAAGCCTG+CGG | - | chr6_3:77537453-77537472 | None:intergenic | 55.0% |
| ! | GTAGTGGAGATCCGGCAGTT+TGG | + | chr6_3:77537598-77537617 | Msa0959840:intron | 55.0% |
| ! | TCTGACCTTCCCGTTGATGG+AGG | + | chr6_3:77537748-77537767 | Msa0959840:intron | 55.0% |
| CCGATTCTTGTGGAACTCCG+AGG | - | chr6_3:77538372-77538391 | None:intergenic | 55.0% | |
| AACACACCCTCCTCATGCCC+AGG | + | chr6_3:77537119-77537138 | Msa0959840:intron | 60.0% | |
| GTCTAGTCCTGGGCATGAGG+AGG | - | chr6_3:77537129-77537148 | None:intergenic | 60.0% | |
| TAAAACGTGACCGGGTGGCC+CGG | + | chr6_3:77537152-77537171 | Msa0959840:intron | 60.0% | |
| GTTACCGTTACCGGGCCACC+CGG | - | chr6_3:77537165-77537184 | None:intergenic | 65.0% | |
| GTGACCGGGTGGCCCGGTAA+CGG | + | chr6_3:77537158-77537177 | Msa0959840:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 77536105 | 77539423 | 77536105 | ID=Msa0959840;Name=Msa0959840 |
| chr6_3 | mRNA | 77536105 | 77539423 | 77536105 | ID=Msa0959840-mRNA-1;Parent=Msa0959840;Name=Msa0959840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=120|1|1|1|0.5|0.33|3|439|110 |
| chr6_3 | exon | 77536105 | 77536194 | 77536105 | ID=Msa0959840-mRNA-1:exon:13881;Parent=Msa0959840-mRNA-1 |
| chr6_3 | exon | 77538230 | 77538478 | 77538230 | ID=Msa0959840-mRNA-1:exon:13882;Parent=Msa0959840-mRNA-1 |
| chr6_3 | exon | 77538871 | 77539423 | 77538871 | ID=Msa0959840-mRNA-1:exon:13883;Parent=Msa0959840-mRNA-1 |
| chr6_3 | five_prime_UTR | 77536105 | 77536194 | 77536105 | ID=Msa0959840-mRNA-1:five_prime_utr;Parent=Msa0959840-mRNA-1 |
| chr6_3 | five_prime_UTR | 77538230 | 77538259 | 77538230 | ID=Msa0959840-mRNA-1:five_prime_utr;Parent=Msa0959840-mRNA-1 |
| chr6_3 | CDS | 77538260 | 77538478 | 77538260 | ID=Msa0959840-mRNA-1:cds;Parent=Msa0959840-mRNA-1 |
| chr6_3 | CDS | 77538871 | 77538984 | 77538871 | ID=Msa0959840-mRNA-1:cds;Parent=Msa0959840-mRNA-1 |
| chr6_3 | three_prime_UTR | 77538985 | 77539423 | 77538985 | ID=Msa0959840-mRNA-1:three_prime_utr;Parent=Msa0959840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
