Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997770 | XP_003620361.1 | 92.013 | 313 | 6 | 1 | 1 | 313 | 1 | 294 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997770 | G7KM58 | 92.013 | 313 | 6 | 1 | 1 | 313 | 1 | 294 | 0.0 | 583 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0997770 | Msa1422020 | 0.811640 | 6.326954e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997770 | MtrunA17_Chr6g0483441 | 92.013 | 313 | 6 | 1 | 1 | 313 | 1 | 294 | 0.0 | 583 |
| Msa0997770 | MtrunA17_Chr8g0392551 | 66.250 | 320 | 77 | 6 | 1 | 313 | 1 | 296 | 3.88e-124 | 357 |
| Msa0997770 | MtrunA17_Chr4g0053001 | 48.538 | 342 | 124 | 9 | 1 | 313 | 12 | 330 | 1.15e-92 | 278 |
| Msa0997770 | MtrunA17_Chr4g0038691 | 44.675 | 338 | 135 | 10 | 1 | 312 | 6 | 317 | 8.68e-75 | 232 |
| Msa0997770 | MtrunA17_Chr2g0331671 | 38.838 | 327 | 157 | 9 | 7 | 313 | 6 | 309 | 2.18e-64 | 205 |
| Msa0997770 | MtrunA17_Chr6g0486001 | 35.928 | 334 | 165 | 8 | 1 | 313 | 1 | 306 | 4.19e-56 | 184 |
| Msa0997770 | MtrunA17_Chr3g0091821 | 40.854 | 164 | 89 | 4 | 153 | 313 | 36 | 194 | 4.54e-35 | 125 |
| Msa0997770 | MtrunA17_Chr8g0379281 | 33.498 | 203 | 94 | 7 | 23 | 220 | 20 | 186 | 6.35e-15 | 72.4 |
| Msa0997770 | MtrunA17_Chr8g0379271 | 40.000 | 95 | 53 | 2 | 220 | 312 | 1 | 93 | 1.67e-13 | 65.5 |
| Msa0997770 | MtrunA17_Chr3g0090061 | 23.894 | 226 | 130 | 7 | 87 | 295 | 129 | 329 | 5.58e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997770 | AT1G45688.1 | 46.685 | 362 | 118 | 9 | 1 | 311 | 1 | 338 | 3.86e-95 | 285 |
| Msa0997770 | AT5G42860.1 | 48.538 | 342 | 119 | 11 | 1 | 311 | 1 | 316 | 1.63e-90 | 273 |
| Msa0997770 | AT1G45688.2 | 49.600 | 250 | 72 | 8 | 1 | 220 | 1 | 226 | 1.85e-69 | 216 |
| Msa0997770 | AT4G35170.1 | 37.421 | 318 | 152 | 8 | 18 | 311 | 3 | 297 | 1.40e-57 | 187 |
| Msa0997770 | AT2G41990.1 | 36.697 | 327 | 158 | 9 | 1 | 310 | 1 | 295 | 8.46e-49 | 165 |
| Msa0997770 | AT3G24605.1 | 33.224 | 304 | 161 | 9 | 1 | 291 | 3 | 277 | 3.07e-38 | 137 |
| Msa0997770 | AT3G24600.1 | 30.351 | 313 | 171 | 8 | 8 | 299 | 3 | 289 | 8.54e-29 | 112 |
Find 91 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAACACTGGCACTTTCTT+TGG | 0.173423 | 6_4:+77846924 | Msa0997770:CDS |
| ATTAATTAATGTAATCAAAA+TGG | 0.178124 | 6_4:-77848671 | None:intergenic |
| AGCTTATGTACTTGGAAATT+TGG | 0.181196 | 6_4:+77848263 | Msa0997770:CDS |
| TGAATATTCATACATGTTAA+AGG | 0.238648 | 6_4:+77848384 | Msa0997770:exon |
| CATGAACAGCTTGGATTCTT+GGG | 0.253276 | 6_4:+77846579 | Msa0997770:intron |
| AGAGAAAGATGAGAATAATT+TGG | 0.254028 | 6_4:-77845038 | None:intergenic |
| TCATGAACAGCTTGGATTCT+TGG | 0.273959 | 6_4:+77846578 | Msa0997770:intron |
| TAATGGATTCCTTTGAGATA+TGG | 0.280476 | 6_4:+77848466 | Msa0997770:three_prime_UTR |
| ACTAGAGCACCAAGTTTCTT+AGG | 0.281801 | 6_4:-77848333 | None:intergenic |
| TGAAGCACAAATACTATAAA+AGG | 0.290325 | 6_4:+77848286 | Msa0997770:CDS |
| AGAGGAATGGTGGTTATTCT+AGG | 0.334315 | 6_4:+77845512 | Msa0997770:CDS |
| TCAGATATAGTCATTGCTTC+AGG | 0.340073 | 6_4:+77846984 | Msa0997770:CDS |
| TTGATCTCATTACAAAGTTA+AGG | 0.356896 | 6_4:-77848239 | None:intergenic |
| TCTTGGGGTTGAAATCTGAT+TGG | 0.386626 | 6_4:+77846595 | Msa0997770:CDS |
| ACTCAGAAGGCAAGATGATT+AGG | 0.386791 | 6_4:+77848516 | Msa0997770:three_prime_UTR |
| CTTGGGGTTGAAATCTGATT+GGG | 0.387715 | 6_4:+77846596 | Msa0997770:CDS |
| GAATTTCAAAGTAGAGTTCA+TGG | 0.389229 | 6_4:-77846895 | None:intergenic |
| GAATATTCATACATGTTAAA+GGG | 0.408280 | 6_4:+77848385 | Msa0997770:exon |
| TTTGTGGTTTGTGTTAGTTT+TGG | 0.412665 | 6_4:-77845079 | None:intergenic |
| ATCACAATCTTCGGCTTCAT+AGG | 0.416185 | 6_4:-77845616 | None:intergenic |
| ACTTATGATATTATGATTTG+TGG | 0.426768 | 6_4:-77845095 | None:intergenic |
| TGAGATATGGATGGAATTGA+AGG | 0.427578 | 6_4:+77848479 | Msa0997770:three_prime_UTR |
| AGTGGAAGAATCTGTACAAC+TGG | 0.427781 | 6_4:-77845013 | None:intergenic |
| AGATCAAGAGCTTATGTACT+TGG | 0.433251 | 6_4:+77848255 | Msa0997770:CDS |
| ATTGATGTTATTGAAGAAGA+AGG | 0.441499 | 6_4:+77845475 | Msa0997770:CDS |
| CAAACCTTGATCACAATCTT+CGG | 0.443506 | 6_4:-77845625 | None:intergenic |
| ATTACAAAGTTAAGGTTCAA+TGG | 0.446813 | 6_4:-77848231 | None:intergenic |
| GGTAGCAAGGTCCCTTTGTA+TGG | 0.447350 | 6_4:+77848159 | Msa0997770:CDS |
| TTAATTAATGTAATCAAAAT+GGG | 0.450915 | 6_4:-77848670 | None:intergenic |
| CAAGCTGGTTCGGATTCGAC+TGG | 0.458128 | 6_4:+77846852 | Msa0997770:CDS |
| TGTTACCGTCCAAGCTGGTT+CGG | 0.463364 | 6_4:+77846842 | Msa0997770:CDS |
| GAAGCCGAAGATTGTGATCA+AGG | 0.468592 | 6_4:+77845621 | Msa0997770:CDS |
| ACCTTGGATCCTAAGAAACT+TGG | 0.478203 | 6_4:+77848324 | Msa0997770:CDS |
| AAGTTAAGGTTCAATGGTAC+TGG | 0.480825 | 6_4:-77848225 | None:intergenic |
| GAATGATGAGGTGAAGCAAC+AGG | 0.483777 | 6_4:-77845379 | None:intergenic |
| ACAAAGATCATGTGTTGGTT+CGG | 0.486095 | 6_4:+77848570 | Msa0997770:three_prime_UTR |
| GCTAGCCTTAGCAGCACAAC+GGG | 0.488000 | 6_4:+77848189 | Msa0997770:CDS |
| CCATGTTTCAGCTACACCCT+TGG | 0.488475 | 6_4:+77846950 | Msa0997770:CDS |
| TTGATGTTATTGAAGAAGAA+GGG | 0.490404 | 6_4:+77845476 | Msa0997770:CDS |
| ATCTAGGAAGAGTCATAGAT+TGG | 0.493508 | 6_4:+77848119 | Msa0997770:CDS |
| TTGGAGAAAGAGAGGAATGG+TGG | 0.495776 | 6_4:+77845502 | Msa0997770:CDS |
| AAGCTGGTTCGGATTCGACT+GGG | 0.499334 | 6_4:+77846853 | Msa0997770:CDS |
| TGAAGGAGTTTCATCAATCT+AGG | 0.500553 | 6_4:+77848103 | Msa0997770:CDS |
| ATTGGTGAGTGTGGCAGTGA+TGG | 0.501754 | 6_4:+77848137 | Msa0997770:CDS |
| ATAACATCAATATGCTTCCA+TGG | 0.513867 | 6_4:-77845463 | None:intergenic |
| GGACTTTGAACGTAGTATAG+TGG | 0.522534 | 6_4:-77845310 | None:intergenic |
| CGACGTGGTGGTGATCTTGT+TGG | 0.523915 | 6_4:-77845286 | None:intergenic |
| CGAATCCGAACCAGCTTGGA+CGG | 0.529659 | 6_4:-77846847 | None:intergenic |
| GCATACCCGTTGTGCTGCTA+AGG | 0.533289 | 6_4:-77848194 | None:intergenic |
| TAGCACCACTTCCATACAAA+GGG | 0.535212 | 6_4:-77848170 | None:intergenic |
| ACCAAGTTTCTTAGGATCCA+AGG | 0.536037 | 6_4:-77848325 | None:intergenic |
| GAGATATGGATGGAATTGAA+GGG | 0.539316 | 6_4:+77848480 | Msa0997770:three_prime_UTR |
| GTGAAGCAACAGGTGTTGAA+TGG | 0.539497 | 6_4:-77845369 | None:intergenic |
| GAACATGTTACCGTCCAAGC+TGG | 0.543885 | 6_4:+77846837 | Msa0997770:CDS |
| GATTCAATGTTCCATCACCT+TGG | 0.548796 | 6_4:+77848308 | Msa0997770:CDS |
| ATCAACATAGTGTTAATCCA+TGG | 0.550799 | 6_4:+77845446 | Msa0997770:CDS |
| TTGGTGAGTGTGGCAGTGAT+GGG | 0.550942 | 6_4:+77848138 | Msa0997770:CDS |
| AAGGTCCCTTTGTATGGAAG+TGG | 0.551894 | 6_4:+77848165 | Msa0997770:CDS |
| AAATTCACATACCGCAACAC+TGG | 0.552172 | 6_4:+77846912 | Msa0997770:CDS |
| ATGAACAGCTTGGATTCTTG+GGG | 0.557011 | 6_4:+77846580 | Msa0997770:intron |
| TTTCTTAGGATCCAAGGTGA+TGG | 0.560780 | 6_4:-77848319 | None:intergenic |
| CGTATGTGCAAGAATTCTTG+AGG | 0.560893 | 6_4:-77848359 | None:intergenic |
| GTTCTTTGAATTATGCAATG+AGG | 0.563916 | 6_4:+77848547 | Msa0997770:three_prime_UTR |
| GATGAGAATAATTTGGACAG+TGG | 0.564663 | 6_4:-77845031 | None:intergenic |
| CAGTCGAATCCGAACCAGCT+TGG | 0.565808 | 6_4:-77846851 | None:intergenic |
| GGATTCCTTTGAGATATGGA+TGG | 0.566300 | 6_4:+77848470 | Msa0997770:three_prime_UTR |
| GTATGTGCAAGAATTCTTGA+GGG | 0.573582 | 6_4:-77848358 | None:intergenic |
| GGGTTGAAATCTGATTGGGT+TGG | 0.578443 | 6_4:+77846600 | Msa0997770:CDS |
| CCAAGGGTGTAGCTGAAACA+TGG | 0.583937 | 6_4:-77846950 | None:intergenic |
| AGATATGGATGGAATTGAAG+GGG | 0.585854 | 6_4:+77848481 | Msa0997770:three_prime_UTR |
| ATCTGAATAAGACAGTTCCA+AGG | 0.596282 | 6_4:-77846967 | None:intergenic |
| GAGTCATAGATTGGTGAGTG+TGG | 0.597085 | 6_4:+77848128 | Msa0997770:CDS |
| CAAAGAAAGTGCCAGTGTTG+CGG | 0.604498 | 6_4:-77846923 | None:intergenic |
| CTAGCACCACTTCCATACAA+AGG | 0.605267 | 6_4:-77848171 | None:intergenic |
| TTCAATGGTACTGGAACTGT+AGG | 0.605405 | 6_4:-77848216 | None:intergenic |
| CAATTCCATCCATATCTCAA+AGG | 0.608908 | 6_4:-77848475 | None:intergenic |
| AGCAACAGGTGTTGAATGGA+AGG | 0.610713 | 6_4:-77845365 | None:intergenic |
| TCTGAATAAGACAGTTCCAA+GGG | 0.610970 | 6_4:-77846966 | None:intergenic |
| TAGTATAGTGGACGACGTGG+TGG | 0.617154 | 6_4:-77845298 | None:intergenic |
| TGTGGCAGTGATGGGTAGCA+AGG | 0.618679 | 6_4:+77848146 | Msa0997770:CDS |
| GATACAGCTCAGAACTCAGA+AGG | 0.623173 | 6_4:+77848503 | Msa0997770:three_prime_UTR |
| TGAGGACAAAGATCATGTGT+TGG | 0.634779 | 6_4:+77848565 | Msa0997770:three_prime_UTR |
| TGGTTCGGATTCGACTGGGG+TGG | 0.641387 | 6_4:+77846857 | Msa0997770:CDS |
| TGAATGGAAGGATGTAGTGA+CGG | 0.653571 | 6_4:-77845353 | None:intergenic |
| AGCTGGTTCGGATTCGACTG+GGG | 0.661111 | 6_4:+77846854 | Msa0997770:CDS |
| TGCTAGCCTTAGCAGCACAA+CGG | 0.662802 | 6_4:+77848188 | Msa0997770:CDS |
| GTTCATGGTGATCATATCAG+TGG | 0.667894 | 6_4:-77846880 | None:intergenic |
| ATACATGTTAAAGGGACACA+AGG | 0.678192 | 6_4:+77848393 | Msa0997770:three_prime_UTR |
| GTGGAAGAAGAAGAATGATG+AGG | 0.698905 | 6_4:-77845391 | None:intergenic |
| ACGTAGTATAGTGGACGACG+TGG | 0.744646 | 6_4:-77845301 | None:intergenic |
| GTTCAAAGTCCATCACACGA+CGG | 0.801345 | 6_4:+77845322 | Msa0997770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATAAATTTTTCATTTTT+AGG | + | chr6_4:77845783-77845802 | Msa0997770:intron | 10.0% |
| !!! | ATGATAAATTTTTCATTTTT+AGG | + | chr6_4:77845783-77845802 | Msa0997770:intron | 10.0% |
| !!! | TTTTAAGATAAAATTTTAAC+TGG | + | chr6_4:77846093-77846112 | Msa0997770:intron | 10.0% |
| !!! | TTTAAGATAAAATTTTAACT+GGG | + | chr6_4:77846094-77846113 | Msa0997770:intron | 10.0% |
| !! | TTAATTAATGTAATCAAAAT+GGG | - | chr6_4:77848673-77848692 | None:intergenic | 10.0% |
| !! | ATTAATTAATGTAATCAAAA+TGG | - | chr6_4:77848674-77848693 | None:intergenic | 10.0% |
| !!! | TTTATTGATTTTGTGATTTT+AGG | + | chr6_4:77845909-77845928 | Msa0997770:intron | 15.0% |
| !!! | ATGTTCAATTTTTCATTTTA+GGG | + | chr6_4:77846035-77846054 | Msa0997770:intron | 15.0% |
| !! | TAATTAAGTTTACTTTCTAA+TGG | - | chr6_4:77847624-77847643 | None:intergenic | 15.0% |
| !!! | AAAAATCAAATTTTAGTCTT+CGG | + | chr6_4:77847881-77847900 | Msa0997770:intron | 15.0% |
| !! | ACTTATGATATTATGATTTG+TGG | - | chr6_4:77845098-77845117 | None:intergenic | 20.0% |
| !! | AGAAATAGAAGAAAAAACAT+AGG | + | chr6_4:77845155-77845174 | Msa0997770:five_prime_UTR | 20.0% |
| !!! | TTTGATTGATTTTTCAGTTT+TGG | + | chr6_4:77845698-77845717 | Msa0997770:intron | 20.0% |
| !!! | ATGTTCAATTTTGCATTTTA+GGG | + | chr6_4:77845825-77845844 | Msa0997770:intron | 20.0% |
| !!! | GTGATAAATTTTGGTTTTTT+AGG | + | chr6_4:77845951-77845970 | Msa0997770:intron | 20.0% |
| !!! | CATGTTCAATTTTTCATTTT+AGG | + | chr6_4:77846034-77846053 | Msa0997770:intron | 20.0% |
| !!! | TTTTAAGTTGAAATGTAAAC+TGG | + | chr6_4:77846176-77846195 | Msa0997770:intron | 20.0% |
| !!! | TTTAAGTTGAAATGTAAACT+GGG | + | chr6_4:77846177-77846196 | Msa0997770:intron | 20.0% |
| !!! | TTTTTAAGATGAAATCTGAA+CGG | + | chr6_4:77846217-77846236 | Msa0997770:intron | 20.0% |
| !!! | AAGATCAATTTTGCATTTTT+AGG | + | chr6_4:77846077-77846096 | Msa0997770:intron | 20.0% |
| !!! | AGATCAATTTTGCATTTTTA+GGG | + | chr6_4:77846078-77846097 | Msa0997770:intron | 20.0% |
| !!! | TTTTAGGTTGAAATTTGAAT+TGG | + | chr6_4:77846312-77846331 | Msa0997770:intron | 20.0% |
| !!! | TTTAGGTTGAAATTTGAATT+GGG | + | chr6_4:77846313-77846332 | Msa0997770:intron | 20.0% |
| !!! | ATGATCAAATTTGGATTTTT+AGG | + | chr6_4:77846379-77846398 | Msa0997770:intron | 20.0% |
| !!! | TTTTAACTTGAAATCTTAAC+TGG | + | chr6_4:77846547-77846566 | Msa0997770:intron | 20.0% |
| !!! | TTTAACTTGAAATCTTAACT+GGG | + | chr6_4:77846548-77846567 | Msa0997770:intron | 20.0% |
| !!! | GTAGTTAAGAAAATTGATTT+TGG | + | chr6_4:77847042-77847061 | Msa0997770:intron | 20.0% |
| !! | TTTATAACATTGAGAACTAT+CGG | + | chr6_4:77847502-77847521 | Msa0997770:intron | 20.0% |
| !! | ATTTAAATCTGAATTCTGTT+TGG | + | chr6_4:77847538-77847557 | Msa0997770:intron | 20.0% |
| !! | AAGATAGAATGATTTATGTT+TGG | + | chr6_4:77847726-77847745 | Msa0997770:intron | 20.0% |
| !! | TGAATATTCATACATGTTAA+AGG | + | chr6_4:77848384-77848403 | Msa0997770:exon | 20.0% |
| !! | GAATATTCATACATGTTAAA+GGG | + | chr6_4:77848385-77848404 | Msa0997770:exon | 20.0% |
| ! | AGAGAAAGATGAGAATAATT+TGG | - | chr6_4:77845041-77845060 | None:intergenic | 25.0% |
| ! | ATTGATGTTATTGAAGAAGA+AGG | + | chr6_4:77845475-77845494 | Msa0997770:CDS | 25.0% |
| ! | TTGATGTTATTGAAGAAGAA+GGG | + | chr6_4:77845476-77845495 | Msa0997770:CDS | 25.0% |
| !!! | TTTTCGTTGTTGTTTTTTGA+GGG | + | chr6_4:77845650-77845669 | Msa0997770:intron | 25.0% |
| !!! | TTTTGGAATGTGATTTGAAT+TGG | + | chr6_4:77845715-77845734 | Msa0997770:intron | 25.0% |
| !! | TTTGGAATGTGATTTGAATT+GGG | + | chr6_4:77845716-77845735 | Msa0997770:intron | 25.0% |
| !!! | TTTTAAGATGAAATGTGAAC+TGG | + | chr6_4:77845757-77845776 | Msa0997770:intron | 25.0% |
| !! | TTTAAGATGAAATGTGAACT+GGG | + | chr6_4:77845758-77845777 | Msa0997770:intron | 25.0% |
| !!! | TTTTAGGTTGAAATGTAAAC+TGG | + | chr6_4:77845799-77845818 | Msa0997770:intron | 25.0% |
| !!! | TTTAGGTTGAAATGTAAACT+GGG | + | chr6_4:77845800-77845819 | Msa0997770:intron | 25.0% |
| !! | CATGTTCAATTTTGCATTTT+AGG | + | chr6_4:77845824-77845843 | Msa0997770:intron | 25.0% |
| !! | TGAGATCAATTTTGCATTTT+TGG | + | chr6_4:77845866-77845885 | Msa0997770:intron | 25.0% |
| !!! | TTTTGGAATGTGATTTGAAT+TGG | + | chr6_4:77845715-77845734 | Msa0997770:intron | 25.0% |
| !! | TTTGGAATGTGATTTGAATT+GGG | + | chr6_4:77845716-77845735 | Msa0997770:intron | 25.0% |
| !!! | TTTTAGGATGTGATTTGAAT+TGG | + | chr6_4:77845925-77845944 | Msa0997770:intron | 25.0% |
| !! | TTTAGGATGTGATTTGAATT+GGG | + | chr6_4:77845926-77845945 | Msa0997770:intron | 25.0% |
| !!! | AATTGGGTTGTGATAAATTT+TGG | + | chr6_4:77845942-77845961 | Msa0997770:intron | 25.0% |
| !!! | TTTTAGGTTGAAATGTAAAC+TGG | + | chr6_4:77845799-77845818 | Msa0997770:intron | 25.0% |
| !!! | TTTAGGTTGAAATGTAAACT+GGG | + | chr6_4:77845800-77845819 | Msa0997770:intron | 25.0% |
| !! | ATGATCAGTTTTGCATTTTT+AGG | + | chr6_4:77846119-77846138 | Msa0997770:intron | 25.0% |
| ! | TAAAAATGCAAAATTGAGCA+TGG | - | chr6_4:77846203-77846222 | None:intergenic | 25.0% |
| !!! | TTTTAAGATGAAATCTGAAC+GGG | + | chr6_4:77846218-77846237 | Msa0997770:intron | 25.0% |
| ! | TTGAAAACTTGAAATCTGAA+TGG | + | chr6_4:77846268-77846287 | Msa0997770:intron | 25.0% |
| ! | TGAAAACTTGAAATCTGAAT+GGG | + | chr6_4:77846269-77846288 | Msa0997770:intron | 25.0% |
| ! | TTGTAGAATGAAATTTGAAC+TGG | + | chr6_4:77846353-77846372 | Msa0997770:intron | 25.0% |
| ! | TGTAGAATGAAATTTGAACT+GGG | + | chr6_4:77846354-77846373 | Msa0997770:intron | 25.0% |
| !! | TTTAGGTTTGAAATGTAAAC+TGG | + | chr6_4:77846396-77846415 | Msa0997770:intron | 25.0% |
| ! | TCAACCTGAAAATGAAAAAT+TGG | - | chr6_4:77846630-77846649 | None:intergenic | 25.0% |
| ! | GTTCAGATTCATTATAGAAA+TGG | - | chr6_4:77846679-77846698 | None:intergenic | 25.0% |
| !! | TATCCAGTTTGCATTATTTT+AGG | + | chr6_4:77846707-77846726 | Msa0997770:intron | 25.0% |
| ! | ATAAAAAATTGAACATGTCC+CGG | - | chr6_4:77846747-77846766 | None:intergenic | 25.0% |
| ! | TTAATGCTTATTTGCATTCA+TGG | + | chr6_4:77847232-77847251 | Msa0997770:intron | 25.0% |
| ! | ATTAAGAAGCTTCAATTTGT+AGG | - | chr6_4:77847288-77847307 | None:intergenic | 25.0% |
| !! | GTTATCCTAATTTTACTACA+TGG | - | chr6_4:77847565-77847584 | None:intergenic | 25.0% |
| !!! | TGTATGTTTTGATTCACTTT+TGG | - | chr6_4:77847924-77847943 | None:intergenic | 25.0% |
| ! | ATTACAAAGTTAAGGTTCAA+TGG | - | chr6_4:77848234-77848253 | None:intergenic | 25.0% |
| ! | TTGATCTCATTACAAAGTTA+AGG | - | chr6_4:77848242-77848261 | None:intergenic | 25.0% |
| ! | TGAAGCACAAATACTATAAA+AGG | + | chr6_4:77848286-77848305 | Msa0997770:CDS | 25.0% |
| !! | TTTGTGGTTTGTGTTAGTTT+TGG | - | chr6_4:77845082-77845101 | None:intergenic | 30.0% |
| ATCAACATAGTGTTAATCCA+TGG | + | chr6_4:77845446-77845465 | Msa0997770:CDS | 30.0% | |
| ATAACATCAATATGCTTCCA+TGG | - | chr6_4:77845466-77845485 | None:intergenic | 30.0% | |
| ! | TATTGAAGAAGAAGGGTTTT+TGG | + | chr6_4:77845483-77845502 | Msa0997770:CDS | 30.0% |
| !!! | TTCTAGGAAGTGTTATTTTC+TGG | + | chr6_4:77845528-77845547 | Msa0997770:CDS | 30.0% |
| !!! | TATTTTCTGGCTTTTGTTGT+TGG | + | chr6_4:77845541-77845560 | Msa0997770:CDS | 30.0% |
| !!! | ATTTTCTGGCTTTTGTTGTT+GGG | + | chr6_4:77845542-77845561 | Msa0997770:CDS | 30.0% |
| !! | TTTGTTTTCGCTTATTCTGT+GGG | + | chr6_4:77845582-77845601 | Msa0997770:CDS | 30.0% |
| !!! | GTTTTCGTTGTTGTTTTTTG+AGG | + | chr6_4:77845649-77845668 | Msa0997770:intron | 30.0% |
| !!! | TGTTGTTTTTTGAGGGTTTT+TGG | + | chr6_4:77845657-77845676 | Msa0997770:intron | 30.0% |
| !!! | TTTTAGGATGAAATGTGAAC+TGG | + | chr6_4:77845967-77845986 | Msa0997770:intron | 30.0% |
| ! | TTTAGGATGAAATGTGAACT+GGG | + | chr6_4:77845968-77845987 | Msa0997770:intron | 30.0% |
| !!! | TTTTAGGATGATGTTTGAAC+TGG | + | chr6_4:77846135-77846154 | Msa0997770:intron | 30.0% |
| ! | TTTAGGATGATGTTTGAACT+GGG | + | chr6_4:77846136-77846155 | Msa0997770:intron | 30.0% |
| ! | TTTAAGATGAAATCTGAACG+GGG | + | chr6_4:77846219-77846238 | Msa0997770:intron | 30.0% |
| TCAACCTAAAAGTGAAACAT+TGG | - | chr6_4:77846303-77846322 | None:intergenic | 30.0% | |
| ! | TGCTCCAATTTTTCATTTTC+AGG | + | chr6_4:77846623-77846642 | Msa0997770:CDS | 30.0% |
| AATGGAAACTTATCAAGAAC+CGG | - | chr6_4:77846661-77846680 | None:intergenic | 30.0% | |
| TCACCTAAAATAATGCAAAC+TGG | - | chr6_4:77846713-77846732 | None:intergenic | 30.0% | |
| TTAGGTGATGAAATCTTAAC+CGG | + | chr6_4:77846725-77846744 | Msa0997770:intron | 30.0% | |
| GAATTTCAAAGTAGAGTTCA+TGG | - | chr6_4:77846898-77846917 | None:intergenic | 30.0% | |
| GATTCACTAACTCATTTGTT+TGG | + | chr6_4:77847015-77847034 | Msa0997770:intron | 30.0% | |
| ! | TGAGTTGAACAATAAATGTG+AGG | + | chr6_4:77847119-77847138 | Msa0997770:intron | 30.0% |
| CAAGTTAGAATTCATTCTAG+AGG | + | chr6_4:77847184-77847203 | Msa0997770:intron | 30.0% | |
| ! | ACTTCAGCATATGTTTGTTT+TGG | + | chr6_4:77847367-77847386 | Msa0997770:intron | 30.0% |
| TTGGACCATGTAGTAAAATT+AGG | + | chr6_4:77847557-77847576 | Msa0997770:intron | 30.0% | |
| !! | TATGTTCTGAAGTCTATACA+TGG | - | chr6_4:77847589-77847608 | None:intergenic | 30.0% |
| ! | ATTACGTTTGAAATAGACAC+TGG | + | chr6_4:77847640-77847659 | Msa0997770:intron | 30.0% |
| !!! | ATGTTTTGATTCACTTTTGG+AGG | - | chr6_4:77847921-77847940 | None:intergenic | 30.0% |
| TCCAAACATGCATATATAGT+TGG | + | chr6_4:77848004-77848023 | Msa0997770:intron | 30.0% | |
| AGCTTATGTACTTGGAAATT+TGG | + | chr6_4:77848263-77848282 | Msa0997770:CDS | 30.0% | |
| !! | TAATGGATTCCTTTGAGATA+TGG | + | chr6_4:77848466-77848485 | Msa0997770:three_prime_UTR | 30.0% |
| GTTCTTTGAATTATGCAATG+AGG | + | chr6_4:77848547-77848566 | Msa0997770:three_prime_UTR | 30.0% | |
| GATGAGAATAATTTGGACAG+TGG | - | chr6_4:77845034-77845053 | None:intergenic | 35.0% | |
| CTTAGAAGCAGAAAAATGAG+TGG | - | chr6_4:77845413-77845432 | None:intergenic | 35.0% | |
| !! | TTTTTGGAGAAAGAGAGGAA+TGG | + | chr6_4:77845499-77845518 | Msa0997770:CDS | 35.0% |
| !!! | CTTTGTTTTCGCTTATTCTG+TGG | + | chr6_4:77845581-77845600 | Msa0997770:CDS | 35.0% |
| ! | TTGTTTTCGCTTATTCTGTG+GGG | + | chr6_4:77845583-77845602 | Msa0997770:CDS | 35.0% |
| CAAACCTTGATCACAATCTT+CGG | - | chr6_4:77845628-77845647 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGAGGGTTTTTGGA+TGG | + | chr6_4:77845661-77845680 | Msa0997770:intron | 35.0% |
| ! | TTTTTGGATGGAATTGGAAC+TGG | + | chr6_4:77845673-77845692 | Msa0997770:intron | 35.0% |
| ! | TTTTGGATGGAATTGGAACT+GGG | + | chr6_4:77845674-77845693 | Msa0997770:intron | 35.0% |
| ! | TTTAGGGTTGAAGTATGAAC+TGG | + | chr6_4:77845841-77845860 | Msa0997770:intron | 35.0% |
| TTAGGGTTGAAGTATGAACT+GGG | + | chr6_4:77845842-77845861 | Msa0997770:intron | 35.0% | |
| !! | TGCTCCAATGTTTCACTTTT+AGG | + | chr6_4:77846296-77846315 | Msa0997770:intron | 35.0% |
| AACTGGGTCATGATCAAATT+TGG | + | chr6_4:77846370-77846389 | Msa0997770:intron | 35.0% | |
| TCGTGTGTTGAAATTTGAAC+TGG | + | chr6_4:77846420-77846439 | Msa0997770:intron | 35.0% | |
| CGTGTGTTGAAATTTGAACT+GGG | + | chr6_4:77846421-77846440 | Msa0997770:intron | 35.0% | |
| !! | TTTCAGGTTGAAATCTGAAC+CGG | + | chr6_4:77846639-77846658 | Msa0997770:intron | 35.0% |
| TAGGTGATGAAATCTTAACC+GGG | + | chr6_4:77846726-77846745 | Msa0997770:intron | 35.0% | |
| TCTGAATAAGACAGTTCCAA+GGG | - | chr6_4:77846969-77846988 | None:intergenic | 35.0% | |
| ATCTGAATAAGACAGTTCCA+AGG | - | chr6_4:77846970-77846989 | None:intergenic | 35.0% | |
| TCAGATATAGTCATTGCTTC+AGG | + | chr6_4:77846984-77847003 | Msa0997770:CDS | 35.0% | |
| ! | GTCGCTGAGATTTATAGTTT+TGG | - | chr6_4:77847165-77847184 | None:intergenic | 35.0% |
| CATATGCTGAAGTTTGTGTT+TGG | - | chr6_4:77847360-77847379 | None:intergenic | 35.0% | |
| !!! | TCAGCATATGTTTGTTTTGG+CGG | + | chr6_4:77847370-77847389 | Msa0997770:intron | 35.0% |
| GCCAACTATATATGCATGTT+TGG | - | chr6_4:77848008-77848027 | None:intergenic | 35.0% | |
| !! | GCATTGATTATTGCAGATGA+AGG | + | chr6_4:77848086-77848105 | Msa0997770:intron | 35.0% |
| TGAAGGAGTTTCATCAATCT+AGG | + | chr6_4:77848103-77848122 | Msa0997770:CDS | 35.0% | |
| ATCTAGGAAGAGTCATAGAT+TGG | + | chr6_4:77848119-77848138 | Msa0997770:CDS | 35.0% | |
| AAGTTAAGGTTCAATGGTAC+TGG | - | chr6_4:77848228-77848247 | None:intergenic | 35.0% | |
| AGATCAAGAGCTTATGTACT+TGG | + | chr6_4:77848255-77848274 | Msa0997770:CDS | 35.0% | |
| GTATGTGCAAGAATTCTTGA+GGG | - | chr6_4:77848361-77848380 | None:intergenic | 35.0% | |
| ATACATGTTAAAGGGACACA+AGG | + | chr6_4:77848393-77848412 | Msa0997770:three_prime_UTR | 35.0% | |
| CAATTCCATCCATATCTCAA+AGG | - | chr6_4:77848478-77848497 | None:intergenic | 35.0% | |
| TGAGATATGGATGGAATTGA+AGG | + | chr6_4:77848479-77848498 | Msa0997770:three_prime_UTR | 35.0% | |
| GAGATATGGATGGAATTGAA+GGG | + | chr6_4:77848480-77848499 | Msa0997770:three_prime_UTR | 35.0% | |
| AGATATGGATGGAATTGAAG+GGG | + | chr6_4:77848481-77848500 | Msa0997770:three_prime_UTR | 35.0% | |
| !! | ACAAAGATCATGTGTTGGTT+CGG | + | chr6_4:77848570-77848589 | Msa0997770:three_prime_UTR | 35.0% |
| AGTGGAAGAATCTGTACAAC+TGG | - | chr6_4:77845016-77845035 | None:intergenic | 40.0% | |
| GGACTTTGAACGTAGTATAG+TGG | - | chr6_4:77845313-77845332 | None:intergenic | 40.0% | |
| TGAATGGAAGGATGTAGTGA+CGG | - | chr6_4:77845356-77845375 | None:intergenic | 40.0% | |
| GTGGAAGAAGAAGAATGATG+AGG | - | chr6_4:77845394-77845413 | None:intergenic | 40.0% | |
| !! | AAGGGTTTTTGGAGAAAGAG+AGG | + | chr6_4:77845494-77845513 | Msa0997770:CDS | 40.0% |
| AGAGGAATGGTGGTTATTCT+AGG | + | chr6_4:77845512-77845531 | Msa0997770:CDS | 40.0% | |
| ATCACAATCTTCGGCTTCAT+AGG | - | chr6_4:77845619-77845638 | None:intergenic | 40.0% | |
| !! | TGAGGGTTTTTGGATGGAAT+TGG | + | chr6_4:77845667-77845686 | Msa0997770:intron | 40.0% |
| TCATGAACAGCTTGGATTCT+TGG | + | chr6_4:77846578-77846597 | Msa0997770:intron | 40.0% | |
| CATGAACAGCTTGGATTCTT+GGG | + | chr6_4:77846579-77846598 | Msa0997770:intron | 40.0% | |
| ATGAACAGCTTGGATTCTTG+GGG | + | chr6_4:77846580-77846599 | Msa0997770:intron | 40.0% | |
| TCTTGGGGTTGAAATCTGAT+TGG | + | chr6_4:77846595-77846614 | Msa0997770:CDS | 40.0% | |
| CTTGGGGTTGAAATCTGATT+GGG | + | chr6_4:77846596-77846615 | Msa0997770:CDS | 40.0% | |
| GTTCATGGTGATCATATCAG+TGG | - | chr6_4:77846883-77846902 | None:intergenic | 40.0% | |
| AAATTCACATACCGCAACAC+TGG | + | chr6_4:77846912-77846931 | Msa0997770:CDS | 40.0% | |
| GCTGAAGTTTGTGTTTGGTT+TGG | - | chr6_4:77847355-77847374 | None:intergenic | 40.0% | |
| AGAGAAAGTCGAGTTACAAG+TGG | + | chr6_4:77847690-77847709 | Msa0997770:intron | 40.0% | |
| !! | TGTTTGGATTCGCTTTTGTG+AGG | - | chr6_4:77847992-77848011 | None:intergenic | 40.0% |
| TAGCACCACTTCCATACAAA+GGG | - | chr6_4:77848173-77848192 | None:intergenic | 40.0% | |
| ! | TTCAATGGTACTGGAACTGT+AGG | - | chr6_4:77848219-77848238 | None:intergenic | 40.0% |
| GATTCAATGTTCCATCACCT+TGG | + | chr6_4:77848308-77848327 | Msa0997770:CDS | 40.0% | |
| TTTCTTAGGATCCAAGGTGA+TGG | - | chr6_4:77848322-77848341 | None:intergenic | 40.0% | |
| ACCTTGGATCCTAAGAAACT+TGG | + | chr6_4:77848324-77848343 | Msa0997770:CDS | 40.0% | |
| ACCAAGTTTCTTAGGATCCA+AGG | - | chr6_4:77848328-77848347 | None:intergenic | 40.0% | |
| ! | ACTAGAGCACCAAGTTTCTT+AGG | - | chr6_4:77848336-77848355 | None:intergenic | 40.0% |
| CGTATGTGCAAGAATTCTTG+AGG | - | chr6_4:77848362-77848381 | None:intergenic | 40.0% | |
| !! | GGATTCCTTTGAGATATGGA+TGG | + | chr6_4:77848470-77848489 | Msa0997770:three_prime_UTR | 40.0% |
| ACTCAGAAGGCAAGATGATT+AGG | + | chr6_4:77848516-77848535 | Msa0997770:three_prime_UTR | 40.0% | |
| TGAGGACAAAGATCATGTGT+TGG | + | chr6_4:77848565-77848584 | Msa0997770:three_prime_UTR | 40.0% | |
| GTTCAAAGTCCATCACACGA+CGG | + | chr6_4:77845322-77845341 | Msa0997770:CDS | 45.0% | |
| !!! | GTTTTTTCACCGTCGTGTGA+TGG | - | chr6_4:77845334-77845353 | None:intergenic | 45.0% |
| !! | AGCAACAGGTGTTGAATGGA+AGG | - | chr6_4:77845368-77845387 | None:intergenic | 45.0% |
| !! | GTGAAGCAACAGGTGTTGAA+TGG | - | chr6_4:77845372-77845391 | None:intergenic | 45.0% |
| GAATGATGAGGTGAAGCAAC+AGG | - | chr6_4:77845382-77845401 | None:intergenic | 45.0% | |
| TTGGAGAAAGAGAGGAATGG+TGG | + | chr6_4:77845502-77845521 | Msa0997770:CDS | 45.0% | |
| GAAGCCGAAGATTGTGATCA+AGG | + | chr6_4:77845621-77845640 | Msa0997770:CDS | 45.0% | |
| GTCATGACTCATGAACAGCT+TGG | + | chr6_4:77846570-77846589 | Msa0997770:intron | 45.0% | |
| GGGTTGAAATCTGATTGGGT+TGG | + | chr6_4:77846600-77846619 | Msa0997770:CDS | 45.0% | |
| !! | CAAAGAAAGTGCCAGTGTTG+CGG | - | chr6_4:77846926-77846945 | None:intergenic | 45.0% |
| GAGTGCTTTGTGACTGTGTT+TGG | + | chr6_4:77847257-77847276 | Msa0997770:intron | 45.0% | |
| !!! | ATGTTTGTTTTGGCGGTGAC+TGG | + | chr6_4:77847377-77847396 | Msa0997770:intron | 45.0% |
| GAGTCATAGATTGGTGAGTG+TGG | + | chr6_4:77848128-77848147 | Msa0997770:CDS | 45.0% | |
| AAGGTCCCTTTGTATGGAAG+TGG | + | chr6_4:77848165-77848184 | Msa0997770:CDS | 45.0% | |
| CTAGCACCACTTCCATACAA+AGG | - | chr6_4:77848174-77848193 | None:intergenic | 45.0% | |
| GATACAGCTCAGAACTCAGA+AGG | + | chr6_4:77848503-77848522 | Msa0997770:three_prime_UTR | 45.0% | |
| !!! | ATTGATTATTTTTTTATTAA+TGG | + | chr6_4:77848449-77848468 | Msa0997770:three_prime_UTR | 5.0% |
| !! | TAGTATAGTGGACGACGTGG+TGG | - | chr6_4:77845301-77845320 | None:intergenic | 50.0% |
| !! | ACGTAGTATAGTGGACGACG+TGG | - | chr6_4:77845304-77845323 | None:intergenic | 50.0% |
| GAACATGTTACCGTCCAAGC+TGG | + | chr6_4:77846837-77846856 | Msa0997770:CDS | 50.0% | |
| TGTTACCGTCCAAGCTGGTT+CGG | + | chr6_4:77846842-77846861 | Msa0997770:CDS | 50.0% | |
| !! | AAGCTGGTTCGGATTCGACT+GGG | + | chr6_4:77846853-77846872 | Msa0997770:CDS | 50.0% |
| CGCAACACTGGCACTTTCTT+TGG | + | chr6_4:77846924-77846943 | Msa0997770:CDS | 50.0% | |
| ! | CCAAGGGTGTAGCTGAAACA+TGG | - | chr6_4:77846953-77846972 | None:intergenic | 50.0% |
| CCATGTTTCAGCTACACCCT+TGG | + | chr6_4:77846950-77846969 | Msa0997770:CDS | 50.0% | |
| ATTGGTGAGTGTGGCAGTGA+TGG | + | chr6_4:77848137-77848156 | Msa0997770:CDS | 50.0% | |
| TTGGTGAGTGTGGCAGTGAT+GGG | + | chr6_4:77848138-77848157 | Msa0997770:CDS | 50.0% | |
| GGTAGCAAGGTCCCTTTGTA+TGG | + | chr6_4:77848159-77848178 | Msa0997770:CDS | 50.0% | |
| !! | TGCTAGCCTTAGCAGCACAA+CGG | + | chr6_4:77848188-77848207 | Msa0997770:CDS | 50.0% |
| ! | CGACGTGGTGGTGATCTTGT+TGG | - | chr6_4:77845289-77845308 | None:intergenic | 55.0% |
| CGAATCCGAACCAGCTTGGA+CGG | - | chr6_4:77846850-77846869 | None:intergenic | 55.0% | |
| CAGTCGAATCCGAACCAGCT+TGG | - | chr6_4:77846854-77846873 | None:intergenic | 55.0% | |
| !! | CAAGCTGGTTCGGATTCGAC+TGG | + | chr6_4:77846852-77846871 | Msa0997770:CDS | 55.0% |
| !! | AGCTGGTTCGGATTCGACTG+GGG | + | chr6_4:77846854-77846873 | Msa0997770:CDS | 55.0% |
| !! | TGTGGCAGTGATGGGTAGCA+AGG | + | chr6_4:77848146-77848165 | Msa0997770:CDS | 55.0% |
| !! | GCTAGCCTTAGCAGCACAAC+GGG | + | chr6_4:77848189-77848208 | Msa0997770:CDS | 55.0% |
| ! | GCATACCCGTTGTGCTGCTA+AGG | - | chr6_4:77848197-77848216 | None:intergenic | 55.0% |
| ! | TGGTTCGGATTCGACTGGGG+TGG | + | chr6_4:77846857-77846876 | Msa0997770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 77844997 | 77848703 | 77844997 | ID=Msa0997770;Name=Msa0997770 |
| chr6_4 | mRNA | 77844997 | 77848703 | 77844997 | ID=Msa0997770-mRNA-1;Parent=Msa0997770;Name=Msa0997770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=232|0.33|0.75|0.75|1|1|4|317|313 |
| chr6_4 | exon | 77844997 | 77845642 | 77844997 | ID=Msa0997770-mRNA-1:exon:14692;Parent=Msa0997770-mRNA-1 |
| chr6_4 | exon | 77846588 | 77846644 | 77846588 | ID=Msa0997770-mRNA-1:exon:14693;Parent=Msa0997770-mRNA-1 |
| chr6_4 | exon | 77846825 | 77847010 | 77846825 | ID=Msa0997770-mRNA-1:exon:14694;Parent=Msa0997770-mRNA-1 |
| chr6_4 | exon | 77848102 | 77848703 | 77848102 | ID=Msa0997770-mRNA-1:exon:14695;Parent=Msa0997770-mRNA-1 |
| chr6_4 | five_prime_UTR | 77844997 | 77845228 | 77844997 | ID=Msa0997770-mRNA-1:five_prime_utr;Parent=Msa0997770-mRNA-1 |
| chr6_4 | CDS | 77845229 | 77845642 | 77845229 | ID=Msa0997770-mRNA-1:cds;Parent=Msa0997770-mRNA-1 |
| chr6_4 | CDS | 77846588 | 77846644 | 77846588 | ID=Msa0997770-mRNA-1:cds;Parent=Msa0997770-mRNA-1 |
| chr6_4 | CDS | 77846825 | 77847010 | 77846825 | ID=Msa0997770-mRNA-1:cds;Parent=Msa0997770-mRNA-1 |
| chr6_4 | CDS | 77848102 | 77848386 | 77848102 | ID=Msa0997770-mRNA-1:cds;Parent=Msa0997770-mRNA-1 |
| chr6_4 | three_prime_UTR | 77848387 | 77848703 | 77848387 | ID=Msa0997770-mRNA-1:three_prime_utr;Parent=Msa0997770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
