Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422020 | G7KM58 | 91.429 | 315 | 6 | 2 | 1 | 315 | 1 | 294 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1390250 | Msa1422020 | 0.854598 | 1.106770e-61 | -8.615850e-47 |
| Msa1422020 | Msa1465750 | 0.804284 | 2.326258e-49 | -8.615850e-47 |
| Msa0138090 | Msa1422020 | 0.806146 | 9.476122e-50 | -8.615850e-47 |
| Msa0172320 | Msa1422020 | 0.853865 | 1.801427e-61 | -8.615850e-47 |
| Msa0429980 | Msa1422020 | 0.811718 | 6.084690e-51 | -8.615850e-47 |
| Msa0997770 | Msa1422020 | 0.811640 | 6.326954e-51 | -8.615850e-47 |
| Msa0500640 | Msa1422020 | 0.801078 | 1.067072e-48 | -8.615850e-47 |
| Msa0500660 | Msa1422020 | 0.819003 | 1.458903e-52 | -8.615850e-47 |
| Msa0526650 | Msa1422020 | 0.859887 | 3.029908e-63 | -8.615850e-47 |
| Msa0526760 | Msa1422020 | 0.842220 | 2.953014e-58 | -8.615850e-47 |
| Msa0527130 | Msa1422020 | 0.819975 | 8.758229e-53 | -8.615850e-47 |
| Msa0897630 | Msa1422020 | 0.844563 | 6.996513e-59 | -8.615850e-47 |
| Msa0924280 | Msa1422020 | 0.940665 | 1.581422e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422020 | MtrunA17_Chr6g0483441 | 91.429 | 315 | 6 | 2 | 1 | 315 | 1 | 294 | 0.0 | 578 |
| Msa1422020 | MtrunA17_Chr8g0392551 | 66.250 | 320 | 79 | 7 | 1 | 315 | 1 | 296 | 2.15e-123 | 355 |
| Msa1422020 | MtrunA17_Chr4g0053001 | 48.538 | 342 | 126 | 9 | 1 | 315 | 12 | 330 | 1.14e-92 | 278 |
| Msa1422020 | MtrunA17_Chr4g0038691 | 44.118 | 340 | 136 | 10 | 1 | 314 | 6 | 317 | 4.45e-74 | 230 |
| Msa1422020 | MtrunA17_Chr2g0331671 | 38.838 | 327 | 159 | 9 | 7 | 315 | 6 | 309 | 4.03e-64 | 204 |
| Msa1422020 | MtrunA17_Chr6g0486001 | 36.527 | 334 | 165 | 8 | 1 | 315 | 1 | 306 | 3.71e-56 | 184 |
| Msa1422020 | MtrunA17_Chr3g0091821 | 40.854 | 164 | 89 | 4 | 155 | 315 | 36 | 194 | 4.82e-35 | 125 |
| Msa1422020 | MtrunA17_Chr8g0379281 | 33.171 | 205 | 94 | 7 | 23 | 222 | 20 | 186 | 1.21e-14 | 71.6 |
| Msa1422020 | MtrunA17_Chr8g0379271 | 40.000 | 95 | 53 | 2 | 222 | 314 | 1 | 93 | 2.01e-13 | 65.1 |
| Msa1422020 | MtrunA17_Chr3g0090061 | 23.894 | 226 | 130 | 7 | 89 | 297 | 129 | 329 | 4.35e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422020 | AT1G45688.1 | 46.685 | 362 | 120 | 9 | 1 | 313 | 1 | 338 | 2.21e-95 | 286 |
| Msa1422020 | AT5G42860.1 | 48.246 | 342 | 122 | 11 | 1 | 313 | 1 | 316 | 4.60e-90 | 271 |
| Msa1422020 | AT1G45688.2 | 49.600 | 250 | 74 | 8 | 1 | 222 | 1 | 226 | 1.40e-69 | 217 |
| Msa1422020 | AT4G35170.1 | 37.736 | 318 | 153 | 8 | 18 | 313 | 3 | 297 | 6.49e-59 | 191 |
| Msa1422020 | AT2G41990.1 | 36.858 | 331 | 154 | 11 | 1 | 312 | 1 | 295 | 1.10e-47 | 162 |
| Msa1422020 | AT3G24605.1 | 32.895 | 304 | 164 | 9 | 1 | 293 | 3 | 277 | 5.36e-38 | 137 |
| Msa1422020 | AT3G24600.1 | 30.032 | 313 | 174 | 8 | 8 | 301 | 3 | 289 | 5.38e-29 | 113 |
| Msa1422020 | AT3G08490.1 | 21.502 | 293 | 184 | 8 | 30 | 312 | 11 | 267 | 6.09e-11 | 62.4 |
Find 88 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAACACTGGCACTTTCTT+TGG | 0.173423 | tig0025333:-50576 | Msa1422020:CDS |
| ATTAATTAATATAATCAAAA+TGG | 0.180153 | tig0025333:+49189 | None:intergenic |
| AGCTTATGTACTTGGAAATT+TGG | 0.181196 | tig0025333:-49598 | Msa1422020:CDS |
| TGAATATTCATATATGTTAA+AGG | 0.229177 | tig0025333:-49477 | Msa1422020:three_prime_UTR |
| AGAGAAAGATGAGAATAATT+TGG | 0.254028 | tig0025333:+52301 | Msa1422030:intron |
| TAATGGATTCCTTTGAGATA+TGG | 0.280476 | tig0025333:-49393 | Msa1422020:three_prime_UTR |
| ACTAGAGCACCAAGTTTCTT+AGG | 0.281801 | tig0025333:+49528 | None:intergenic |
| TGAAGCACAAATACTATAAA+AGG | 0.290325 | tig0025333:-49575 | Msa1422020:CDS |
| GAAAGTGTAAAAGAATTATT+AGG | 0.332630 | tig0025333:-49440 | Msa1422020:three_prime_UTR |
| AGAGGAATGGTGGTTATTCT+AGG | 0.334315 | tig0025333:-51821 | Msa1422020:CDS |
| TCAGATATAGTCATTGCTTC+AGG | 0.340073 | tig0025333:-50516 | Msa1422020:CDS |
| ACAAACCTTGATCACAATCT+TGG | 0.367265 | tig0025333:+51707 | None:intergenic |
| ACTCAGAAGGCAAGATGATT+AGG | 0.375717 | tig0025333:-49343 | Msa1422020:three_prime_UTR |
| GAATTTCAAAGTAGAGTTCA+TGG | 0.389229 | tig0025333:+50605 | None:intergenic |
| GAATATTCATATATGTTAAA+GGG | 0.389673 | tig0025333:-49476 | Msa1422020:three_prime_UTR |
| ATCACAATCTTGGGCTTCAT+AGG | 0.399696 | tig0025333:+51717 | None:intergenic |
| TTGATCTCATCACAAAGTTA+AGG | 0.410482 | tig0025333:+49622 | None:intergenic |
| TTTGTGGTTTGTGTTAGTTT+TGG | 0.412665 | tig0025333:+52260 | Msa1422030:intron |
| TGAGATATGGATGGAATTGA+TGG | 0.423689 | tig0025333:-49380 | Msa1422020:three_prime_UTR |
| ACTTATGATATTATGATTTG+TGG | 0.426768 | tig0025333:+52244 | Msa1422030:intron |
| AGTGGAAGAATCTGTACAAC+TGG | 0.427781 | tig0025333:+52326 | Msa1422030:intron |
| GAAGCCCAAGATTGTGATCA+AGG | 0.437262 | tig0025333:-51712 | Msa1422020:intron |
| TTTAGGGTTGAAATCTGATT+GGG | 0.440374 | tig0025333:-50905 | Msa1422020:CDS |
| ATTGATGTTATTGAAGAAGA+AGG | 0.441499 | tig0025333:-51858 | Msa1422020:CDS |
| GGTAGCAAGGTCCCTTTGTA+TGG | 0.447350 | tig0025333:-49702 | Msa1422020:CDS |
| CAAACCTTGATCACAATCTT+GGG | 0.451461 | tig0025333:+51708 | None:intergenic |
| CAAGCTGGTTCGGATTCGAC+TGG | 0.458128 | tig0025333:-50648 | Msa1422020:CDS |
| GCAAGCCTTAGCAGCACAAC+GGG | 0.460597 | tig0025333:-49672 | Msa1422020:CDS |
| TGTTACCGTCCAAGCTGGTT+CGG | 0.463364 | tig0025333:-50658 | Msa1422020:CDS |
| AGATCAAGAGCTTATGTACT+TGG | 0.464263 | tig0025333:-49606 | Msa1422020:CDS |
| TTAATTAATATAATCAAAAT+GGG | 0.471258 | tig0025333:+49190 | None:intergenic |
| ACCTTGGATCCTAAGAAACT+TGG | 0.478203 | tig0025333:-49537 | Msa1422020:CDS |
| ATCACAAAGTTAAGGTTCAA+TGG | 0.479277 | tig0025333:+49630 | None:intergenic |
| GAATGATGAGGTGAAGCAAC+AGG | 0.483777 | tig0025333:+51960 | None:intergenic |
| CCATGTTTCAGCTACACCCT+TGG | 0.488475 | tig0025333:-50550 | Msa1422020:CDS |
| TTGATGTTATTGAAGAAGAA+GGG | 0.490404 | tig0025333:-51857 | Msa1422020:CDS |
| ATCTAGGAAGAGTCATAGAT+TGG | 0.493508 | tig0025333:-49742 | Msa1422020:CDS |
| TTGGAGAAAGAGAGGAATGG+TGG | 0.495776 | tig0025333:-51831 | Msa1422020:CDS |
| GGACAAAGATCATGTTGGTT+CGG | 0.497730 | tig0025333:-49291 | Msa1422020:three_prime_UTR |
| AAGCTGGTTCGGATTCGACT+GGG | 0.499334 | tig0025333:-50647 | Msa1422020:CDS |
| TGAAGGAGTTTCATCAATCT+AGG | 0.500553 | tig0025333:-49758 | Msa1422020:CDS |
| ATTGGTGAGTGTGGCAGTGA+TGG | 0.501754 | tig0025333:-49724 | Msa1422020:CDS |
| ATAACATCAATATGCTTCCA+TGG | 0.513867 | tig0025333:+51870 | None:intergenic |
| GGACTTTGAACGTAGTATAG+TGG | 0.522534 | tig0025333:+52029 | Msa1422030:intron |
| GCATACCCGTTGTGCTGCTA+AGG | 0.522833 | tig0025333:+49667 | None:intergenic |
| CGACGTGGTGGTGATCTTGT+TGG | 0.523915 | tig0025333:+52053 | Msa1422030:intron |
| AAGTTAAGGTTCAATGGCAC+TGG | 0.526221 | tig0025333:+49636 | None:intergenic |
| CGAATCCGAACCAGCTTGGA+CGG | 0.529659 | tig0025333:+50653 | None:intergenic |
| TTGCACCACTTCCATACAAA+GGG | 0.535212 | tig0025333:+49691 | None:intergenic |
| ACCAAGTTTCTTAGGATCCA+AGG | 0.536037 | tig0025333:+49536 | None:intergenic |
| GTGAAGCAACAGGTGTTGAA+TGG | 0.539497 | tig0025333:+51970 | Msa1422030:intron |
| GAACATGTTACCGTCCAAGC+TGG | 0.543885 | tig0025333:-50663 | Msa1422020:CDS |
| GATTCAATGTTCCATCACCT+TGG | 0.548796 | tig0025333:-49553 | Msa1422020:CDS |
| TTGGTGAGTGTGGCAGTGAT+GGG | 0.550942 | tig0025333:-49723 | Msa1422020:CDS |
| AAGGTCCCTTTGTATGGAAG+TGG | 0.551894 | tig0025333:-49696 | Msa1422020:CDS |
| AAATTCACATACCGCAACAC+TGG | 0.552172 | tig0025333:-50588 | Msa1422020:CDS |
| AGAATCATAGTGTTAATCCA+TGG | 0.554930 | tig0025333:-51887 | Msa1422020:CDS |
| GAGATATGGATGGAATTGAT+GGG | 0.559554 | tig0025333:-49379 | Msa1422020:three_prime_UTR |
| TTTCTTAGGATCCAAGGTGA+TGG | 0.560780 | tig0025333:+49542 | None:intergenic |
| CATATGTGCAAGAATTCTTG+AGG | 0.561648 | tig0025333:+49502 | None:intergenic |
| GTTCTTTGAATTATGCAATG+AGG | 0.563916 | tig0025333:-49312 | Msa1422020:three_prime_UTR |
| GATGAGAATAATTTGGACAG+TGG | 0.564663 | tig0025333:+52308 | Msa1422030:intron |
| ATATGTGCAAGAATTCTTGA+GGG | 0.565567 | tig0025333:+49503 | None:intergenic |
| CAGTCGAATCCGAACCAGCT+TGG | 0.565808 | tig0025333:+50649 | None:intergenic |
| GGATTCCTTTGAGATATGGA+TGG | 0.566300 | tig0025333:-49389 | Msa1422020:three_prime_UTR |
| CCAAGGGTGTAGCTGAAACA+TGG | 0.583937 | tig0025333:+50550 | None:intergenic |
| ATCTGAATAAGACAGTTCCA+AGG | 0.596282 | tig0025333:+50533 | None:intergenic |
| GAGTCATAGATTGGTGAGTG+TGG | 0.597085 | tig0025333:-49733 | Msa1422020:CDS |
| TTCAATGGCACTGGAACTGT+AGG | 0.597432 | tig0025333:+49645 | None:intergenic |
| CAAAGAAAGTGCCAGTGTTG+CGG | 0.604498 | tig0025333:+50577 | None:intergenic |
| AGCAACAGGTGTTGAATGGA+AGG | 0.610713 | tig0025333:+51974 | Msa1422030:intron |
| TCTGAATAAGACAGTTCCAA+GGG | 0.610970 | tig0025333:+50534 | None:intergenic |
| CAATTCCATCCATATCTCAA+AGG | 0.611390 | tig0025333:+49384 | None:intergenic |
| CTTGCACCACTTCCATACAA+AGG | 0.614462 | tig0025333:+49690 | None:intergenic |
| TAGTATAGTGGACGACGTGG+TGG | 0.617154 | tig0025333:+52041 | Msa1422030:intron |
| TGTGGCAGTGATGGGTAGCA+AGG | 0.618679 | tig0025333:-49715 | Msa1422020:CDS |
| GATACAGCTCAGAACTCAGA+AGG | 0.623173 | tig0025333:-49356 | Msa1422020:three_prime_UTR |
| TGGTTCGGATTCGACTGGGG+TGG | 0.641387 | tig0025333:-50643 | Msa1422020:CDS |
| GGGTTGAAATCTGATTGGGT+TGG | 0.642747 | tig0025333:-50901 | Msa1422020:CDS |
| TGCAAGCCTTAGCAGCACAA+CGG | 0.643607 | tig0025333:-49673 | Msa1422020:CDS |
| AATGAGGACAAAGATCATGT+TGG | 0.645906 | tig0025333:-49296 | Msa1422020:three_prime_UTR |
| TGAATGGAAGGATGTAGTGA+CGG | 0.653571 | tig0025333:+51986 | Msa1422030:intron |
| AGCTGGTTCGGATTCGACTG+GGG | 0.661111 | tig0025333:-50646 | Msa1422020:CDS |
| AGATATGGATGGAATTGATG+GGG | 0.666943 | tig0025333:-49378 | Msa1422020:three_prime_UTR |
| GTTCATGGTGATCATATCAG+TGG | 0.667894 | tig0025333:+50620 | None:intergenic |
| GTGGAAGAAGAAGAATGATG+AGG | 0.698905 | tig0025333:+51948 | None:intergenic |
| ACGTAGTATAGTGGACGACG+TGG | 0.744646 | tig0025333:+52038 | Msa1422030:intron |
| GTTCAAAGTCCATCACACGA+CGG | 0.801345 | tig0025333:-52017 | Msa1422020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATTTTTTTTATTAA+TGG | - | tig0025333:52111-52130 | Msa1422020:CDS | 0.0% |
| !!! | ATGATAAATTTTTCAATTTT+AGG | - | tig0025333:50013-50032 | Msa1422020:intron | 10.0% |
| !!! | AAAATTAATTTTGATTAGAT+TGG | - | tig0025333:51361-51380 | Msa1422020:intron | 10.0% |
| !!! | TTTTGATTATTGTTTTTTGA+GGG | - | tig0025333:49838-49857 | Msa1422020:intron | 15.0% |
| !!! | TTTATTGATTTTGTGATTTT+AGG | - | tig0025333:49929-49948 | Msa1422020:intron | 15.0% |
| !! | TGAATATTCATATATGTTAA+AGG | - | tig0025333:52044-52063 | Msa1422020:CDS | 15.0% |
| !! | GAATATTCATATATGTTAAA+GGG | - | tig0025333:52045-52064 | Msa1422020:CDS | 15.0% |
| !! | ACTTATGATATTATGATTTG+TGG | + | tig0025333:49280-49299 | None:intergenic | 20.0% |
| !! | AGAAATAGAAGAAAAAACAT+AGG | - | tig0025333:49337-49356 | Msa1422020:three_prime_UTR | 20.0% |
| !!! | GTTTTGATTATTGTTTTTTG+AGG | - | tig0025333:49837-49856 | Msa1422020:intron | 20.0% |
| !!! | GTGATAAATTTTGCTTTTTT+AGG | - | tig0025333:49971-49990 | Msa1422020:intron | 20.0% |
| !!! | ATGTTCAATTTTGCATTTTA+GGG | - | tig0025333:50055-50074 | Msa1422020:intron | 20.0% |
| !!! | AGATCAATTTTGCATTTTTA+AGG | - | tig0025333:50098-50117 | Msa1422020:intron | 20.0% |
| !!! | GATCAATTTTGCATTTTTAA+GGG | - | tig0025333:50099-50118 | Msa1422020:intron | 20.0% |
| !!! | TTTTAAGTTGAAATGTAAAC+TGG | - | tig0025333:50198-50217 | Msa1422020:intron | 20.0% |
| !!! | TTTAAGTTGAAATGTAAACT+GGG | - | tig0025333:50199-50218 | Msa1422020:intron | 20.0% |
| !!! | AAGATCAATTTTGCATTTTT+AGG | - | tig0025333:50264-50283 | Msa1422020:intron | 20.0% |
| !!! | AGATCAATTTTGCATTTTTA+GGG | - | tig0025333:50098-50117 | Msa1422020:intron | 20.0% |
| !!! | TTTTAGGTTGAAATTTGAAT+TGG | - | tig0025333:50332-50351 | Msa1422020:intron | 20.0% |
| !!! | TTTAGGTTGAAATTTGAATT+GGG | - | tig0025333:50333-50352 | Msa1422020:intron | 20.0% |
| !!! | ATGATCAAATTTGGATTTTT+AGG | - | tig0025333:50399-50418 | Msa1422020:intron | 20.0% |
| !!! | TATCCATTTTGCATTATTTT+AGG | - | tig0025333:50727-50746 | Msa1422020:intron | 20.0% |
| !!! | GTAGTTAAGAAAATTGATTT+TGG | - | tig0025333:51063-51082 | Msa1422020:intron | 20.0% |
| !! | ATTAAGAAGTTTCAATTTGT+AGG | + | tig0025333:51250-51269 | None:intergenic | 20.0% |
| !!! | CAAAAATCAATTTTAAGTCA+TGG | - | tig0025333:51548-51567 | Msa1422020:intron | 20.0% |
| !! | TGTGTTAGAAAAATACAAAA+GGG | + | tig0025333:51729-51748 | None:intergenic | 20.0% |
| !! | ATGTGTTAGAAAAATACAAA+AGG | + | tig0025333:51730-51749 | None:intergenic | 20.0% |
| !!! | GAAAGTGTAAAAGAATTATT+AGG | - | tig0025333:52081-52100 | Msa1422020:CDS | 20.0% |
| ! | AGAGAAAGATGAGAATAATT+TGG | + | tig0025333:49223-49242 | None:intergenic | 25.0% |
| ! | ATTGATGTTATTGAAGAAGA+AGG | - | tig0025333:49663-49682 | Msa1422020:CDS | 25.0% |
| ! | TTGATGTTATTGAAGAAGAA+GGG | - | tig0025333:49664-49683 | Msa1422020:CDS | 25.0% |
| !!! | TTTGTTTTCGCTTATTCTTT+GGG | - | tig0025333:49770-49789 | Msa1422020:intron | 25.0% |
| !!! | TATTGTTTTTTGAGGGTTTT+TGG | - | tig0025333:49845-49864 | Msa1422020:intron | 25.0% |
| !! | TTTGATTGATTGTTCAGTTT+TGG | - | tig0025333:49886-49905 | Msa1422020:intron | 25.0% |
| !!! | TTTTGGAATGTGATTTGAAT+TGG | - | tig0025333:49903-49922 | Msa1422020:intron | 25.0% |
| !! | TTTGGAATGTGATTTGAATT+GGG | - | tig0025333:49904-49923 | Msa1422020:intron | 25.0% |
| !!! | TTTTAGGATGTGATTTGAAT+TGG | - | tig0025333:49945-49964 | Msa1422020:intron | 25.0% |
| !!! | TTTTAGGATGAAATTTGAAC+TGG | - | tig0025333:49987-50006 | Msa1422020:intron | 25.0% |
| !! | TTTAGGATGAAATTTGAACT+GGG | - | tig0025333:49988-50007 | Msa1422020:intron | 25.0% |
| !!! | TTTTAGGTTGAAATGTAAAC+TGG | - | tig0025333:50029-50048 | Msa1422020:intron | 25.0% |
| !!! | TTTAGGTTGAAATGTAAACT+GGG | - | tig0025333:50030-50049 | Msa1422020:intron | 25.0% |
| !! | CATGTTCAATTTTGCATTTT+AGG | - | tig0025333:50054-50073 | Msa1422020:intron | 25.0% |
| !!! | TTTAAGGGTGAAATTTTAAC+TGG | - | tig0025333:50114-50133 | Msa1422020:intron | 25.0% |
| !!! | TTAAGGGTGAAATTTTAACT+GGG | - | tig0025333:50115-50134 | Msa1422020:intron | 25.0% |
| !!! | CATTTTTAAGATGATCTGAA+CGG | - | tig0025333:50237-50256 | Msa1422020:intron | 25.0% |
| !!! | ATTTTTAAGATGATCTGAAC+GGG | - | tig0025333:50238-50257 | Msa1422020:intron | 25.0% |
| ! | TTGAAAACTTGAAATCTGAA+TGG | - | tig0025333:50288-50307 | Msa1422020:intron | 25.0% |
| ! | TGAAAACTTGAAATCTGAAT+GGG | - | tig0025333:50289-50308 | Msa1422020:intron | 25.0% |
| ! | TTGTAGAATGAAATTTGAAC+TGG | - | tig0025333:50373-50392 | Msa1422020:intron | 25.0% |
| ! | TGTAGAATGAAATTTGAACT+GGG | - | tig0025333:50374-50393 | Msa1422020:intron | 25.0% |
| !!! | TCAATTTTGCATTTTTAGAG+TGG | - | tig0025333:50512-50531 | Msa1422020:CDS | 25.0% |
| !!! | TTTTGACTTGAAATCTTAAC+TGG | - | tig0025333:50567-50586 | Msa1422020:CDS | 25.0% |
| !!! | TTTGACTTGAAATCTTAACT+GGG | - | tig0025333:50568-50587 | Msa1422020:CDS | 25.0% |
| ! | TCAACCTGAAAATGAAAAAT+TGG | + | tig0025333:50650-50669 | None:intergenic | 25.0% |
| ! | AATGGAAACTTATCAAAAAC+CGG | + | tig0025333:50681-50700 | None:intergenic | 25.0% |
| ! | GTTCAGATTCATTATAGAAA+TGG | + | tig0025333:50699-50718 | None:intergenic | 25.0% |
| ! | CATCCTAAAATAATGCAAAA+TGG | + | tig0025333:50733-50752 | None:intergenic | 25.0% |
| ! | ATAAAAAATTGAACATGTCC+CGG | + | tig0025333:50768-50787 | None:intergenic | 25.0% |
| ! | CAAGTTATAATTCATTCTAG+AGG | - | tig0025333:51193-51212 | Msa1422020:intron | 25.0% |
| ! | TTGAGTGTATAAATCATGTT+TGG | - | tig0025333:51462-51481 | Msa1422020:intron | 25.0% |
| !!! | ATTGATTTTTGTATGTTCGA+TGG | + | tig0025333:51539-51558 | None:intergenic | 25.0% |
| ! | TGAAGCACAAATACTATAAA+AGG | - | tig0025333:51946-51965 | Msa1422020:CDS | 25.0% |
| !! | TTTGTGGTTTGTGTTAGTTT+TGG | + | tig0025333:49264-49283 | None:intergenic | 30.0% |
| AGAATCATAGTGTTAATCCA+TGG | - | tig0025333:49634-49653 | Msa1422020:CDS | 30.0% | |
| ATAACATCAATATGCTTCCA+TGG | + | tig0025333:49654-49673 | None:intergenic | 30.0% | |
| ! | TATTGAAGAAGAAGGGTTTT+TGG | - | tig0025333:49671-49690 | Msa1422020:CDS | 30.0% |
| !!! | TTCTAGGAAGTGTTATTTTC+TGG | - | tig0025333:49716-49735 | Msa1422020:CDS | 30.0% |
| !!! | TATTTTCTGGCTTTTGTTGT+TGG | - | tig0025333:49729-49748 | Msa1422020:CDS | 30.0% |
| !!! | ATTTTCTGGCTTTTGTTGTT+GGG | - | tig0025333:49730-49749 | Msa1422020:CDS | 30.0% |
| !!! | CTTTGTTTTCGCTTATTCTT+TGG | - | tig0025333:49769-49788 | Msa1422020:intron | 30.0% |
| ! | TTGTTTTCGCTTATTCTTTG+GGG | - | tig0025333:49771-49790 | Msa1422020:intron | 30.0% |
| ! | TTTTTGGATGAAATTGGAAC+TGG | - | tig0025333:49861-49880 | Msa1422020:intron | 30.0% |
| ! | TTTTGGATGAAATTGGAACT+GGG | - | tig0025333:49862-49881 | Msa1422020:intron | 30.0% |
| ! | TTTAGGGTTGAAATATGAAC+TGG | - | tig0025333:50071-50090 | Msa1422020:intron | 30.0% |
| TTAGGGTTGAAATATGAACT+GGG | - | tig0025333:50072-50091 | Msa1422020:intron | 30.0% | |
| !!! | TTTTAAGATGATGTTCGAAC+TGG | - | tig0025333:50156-50175 | Msa1422020:intron | 30.0% |
| ! | TTTAAGATGATGTTCGAACT+GGG | - | tig0025333:50157-50176 | Msa1422020:intron | 30.0% |
| !!! | TTTTTAAGATGATCTGAACG+GGG | - | tig0025333:50239-50258 | Msa1422020:intron | 30.0% |
| TCAACCTAAAAGTGAAACAT+TGG | + | tig0025333:50323-50342 | None:intergenic | 30.0% | |
| ! | TTTAGGTTTGAAACGTAAAC+TGG | - | tig0025333:50416-50435 | Msa1422020:intron | 30.0% |
| ! | ATGAACAGCTTGGATTTTTA+GGG | - | tig0025333:50600-50619 | Msa1422020:CDS | 30.0% |
| !!! | TTTTAGGGTTGAAATCTGAT+TGG | - | tig0025333:50615-50634 | Msa1422020:CDS | 30.0% |
| ! | TTTAGGGTTGAAATCTGATT+GGG | - | tig0025333:50616-50635 | Msa1422020:CDS | 30.0% |
| ! | TGCTCCAATTTTTCATTTTC+AGG | - | tig0025333:50643-50662 | Msa1422020:CDS | 30.0% |
| TAGGATGATGAAATCTTAAC+CGG | - | tig0025333:50746-50765 | Msa1422020:intron | 30.0% | |
| GAATTTCAAAGTAGAGTTCA+TGG | + | tig0025333:50919-50938 | None:intergenic | 30.0% | |
| GATTCACTAACTCATTTGTT+TGG | - | tig0025333:51036-51055 | Msa1422020:intron | 30.0% | |
| ! | TGAGTTGAACAATAAATGTG+AGG | - | tig0025333:51140-51159 | Msa1422020:intron | 30.0% |
| ! | GAAGCTGAGATTTGTAATTT+TGG | + | tig0025333:51174-51193 | None:intergenic | 30.0% |
| AAACATTGTGATTGTGTGTT+TGG | - | tig0025333:51219-51238 | Msa1422020:intron | 30.0% | |
| ! | TTTTCACAGTGAGTTTACAT+TGG | - | tig0025333:51269-51288 | Msa1422020:intron | 30.0% |
| TTTCACAGTGAGTTTACATT+GGG | - | tig0025333:51270-51289 | Msa1422020:intron | 30.0% | |
| ! | ACAAACACTAAGCATGTTTT+TGG | + | tig0025333:51324-51343 | None:intergenic | 30.0% |
| !! | GAATTGATTGACTCTAGAAT+TGG | + | tig0025333:51506-51525 | None:intergenic | 30.0% |
| TCCAAACATGCATATATAGT+TGG | - | tig0025333:51666-51685 | Msa1422020:intron | 30.0% | |
| ACCAACTATATATGCATGTT+TGG | + | tig0025333:51670-51689 | None:intergenic | 30.0% | |
| ! | ACATTGATTATTGCAGATGA+AGG | - | tig0025333:51746-51765 | Msa1422020:CDS | 30.0% |
| ATCACAAAGTTAAGGTTCAA+TGG | + | tig0025333:51894-51913 | None:intergenic | 30.0% | |
| TTGATCTCATCACAAAGTTA+AGG | + | tig0025333:51902-51921 | None:intergenic | 30.0% | |
| AGCTTATGTACTTGGAAATT+TGG | - | tig0025333:51923-51942 | Msa1422020:CDS | 30.0% | |
| ATATGTGCAAGAATTCTTGA+GGG | + | tig0025333:52021-52040 | Msa1422030:intron | 30.0% | |
| !! | TAATGGATTCCTTTGAGATA+TGG | - | tig0025333:52128-52147 | Msa1422020:exon | 30.0% |
| GTTCTTTGAATTATGCAATG+AGG | - | tig0025333:52209-52228 | Msa1422020:five_prime_UTR | 30.0% | |
| GATGAGAATAATTTGGACAG+TGG | + | tig0025333:49216-49235 | None:intergenic | 35.0% | |
| CTTAGAAGCAGAAAAATGAG+TGG | + | tig0025333:49595-49614 | None:intergenic | 35.0% | |
| !! | TTTTTGGAGAAAGAGAGGAA+TGG | - | tig0025333:49687-49706 | Msa1422020:CDS | 35.0% |
| CAAACCTTGATCACAATCTT+GGG | + | tig0025333:49816-49835 | None:intergenic | 35.0% | |
| ACAAACCTTGATCACAATCT+TGG | + | tig0025333:49817-49836 | None:intergenic | 35.0% | |
| !! | TGAGGGTTTTTGGATGAAAT+TGG | - | tig0025333:49855-49874 | Msa1422020:intron | 35.0% |
| !! | TGCTCCAATGTTTCACTTTT+AGG | - | tig0025333:50316-50335 | Msa1422020:intron | 35.0% |
| AACTGGGTCATGATCAAATT+TGG | - | tig0025333:50390-50409 | Msa1422020:intron | 35.0% | |
| TCGTGTGTTGAAATTTGAAC+TGG | - | tig0025333:50440-50459 | Msa1422020:intron | 35.0% | |
| CGTGTGTTGAAATTTGAACT+GGG | - | tig0025333:50441-50460 | Msa1422020:intron | 35.0% | |
| ! | CATGAACAGCTTGGATTTTT+AGG | - | tig0025333:50599-50618 | Msa1422020:CDS | 35.0% |
| !! | TTTCAGGTTGAAATCTGAAC+CGG | - | tig0025333:50659-50678 | Msa1422020:CDS | 35.0% |
| AGGATGATGAAATCTTAACC+GGG | - | tig0025333:50747-50766 | Msa1422020:intron | 35.0% | |
| TCTGAATAAGACAGTTCCAA+GGG | + | tig0025333:50990-51009 | None:intergenic | 35.0% | |
| ATCTGAATAAGACAGTTCCA+AGG | + | tig0025333:50991-51010 | None:intergenic | 35.0% | |
| TCAGATATAGTCATTGCTTC+AGG | - | tig0025333:51005-51024 | Msa1422020:intron | 35.0% | |
| !! | GTGTTTGTTTGTTTCTACTG+TGG | - | tig0025333:51336-51355 | Msa1422020:intron | 35.0% |
| TGAAGGAGTTTCATCAATCT+AGG | - | tig0025333:51763-51782 | Msa1422020:CDS | 35.0% | |
| ATCTAGGAAGAGTCATAGAT+TGG | - | tig0025333:51779-51798 | Msa1422020:CDS | 35.0% | |
| AGATCAAGAGCTTATGTACT+TGG | - | tig0025333:51915-51934 | Msa1422020:CDS | 35.0% | |
| CATATGTGCAAGAATTCTTG+AGG | + | tig0025333:52022-52041 | Msa1422030:intron | 35.0% | |
| CAATTCCATCCATATCTCAA+AGG | + | tig0025333:52140-52159 | Msa1422030:intron | 35.0% | |
| TGAGATATGGATGGAATTGA+TGG | - | tig0025333:52141-52160 | Msa1422020:five_prime_UTR | 35.0% | |
| GAGATATGGATGGAATTGAT+GGG | - | tig0025333:52142-52161 | Msa1422020:five_prime_UTR | 35.0% | |
| AGATATGGATGGAATTGATG+GGG | - | tig0025333:52143-52162 | Msa1422020:five_prime_UTR | 35.0% | |
| AATGAGGACAAAGATCATGT+TGG | - | tig0025333:52225-52244 | Msa1422020:five_prime_UTR | 35.0% | |
| AGTGGAAGAATCTGTACAAC+TGG | + | tig0025333:49198-49217 | None:intergenic | 40.0% | |
| GGACTTTGAACGTAGTATAG+TGG | + | tig0025333:49495-49514 | None:intergenic | 40.0% | |
| TGAATGGAAGGATGTAGTGA+CGG | + | tig0025333:49538-49557 | None:intergenic | 40.0% | |
| GTGGAAGAAGAAGAATGATG+AGG | + | tig0025333:49576-49595 | None:intergenic | 40.0% | |
| !! | AAGGGTTTTTGGAGAAAGAG+AGG | - | tig0025333:49682-49701 | Msa1422020:CDS | 40.0% |
| AGAGGAATGGTGGTTATTCT+AGG | - | tig0025333:49700-49719 | Msa1422020:CDS | 40.0% | |
| ATCACAATCTTGGGCTTCAT+AGG | + | tig0025333:49807-49826 | None:intergenic | 40.0% | |
| GTTCATGGTGATCATATCAG+TGG | + | tig0025333:50904-50923 | None:intergenic | 40.0% | |
| AAATTCACATACCGCAACAC+TGG | - | tig0025333:50933-50952 | Msa1422020:intron | 40.0% | |
| !!! | TAAGCATGTTTTTGGTGTGG+TGG | + | tig0025333:51316-51335 | None:intergenic | 40.0% |
| !!! | CACTAAGCATGTTTTTGGTG+TGG | + | tig0025333:51319-51338 | None:intergenic | 40.0% |
| !! | TGTTTGGATTCGCTTTTGTG+AGG | + | tig0025333:51654-51673 | None:intergenic | 40.0% |
| TTGCACCACTTCCATACAAA+GGG | + | tig0025333:51833-51852 | None:intergenic | 40.0% | |
| AAGTTAAGGTTCAATGGCAC+TGG | + | tig0025333:51888-51907 | None:intergenic | 40.0% | |
| GATTCAATGTTCCATCACCT+TGG | - | tig0025333:51968-51987 | Msa1422020:CDS | 40.0% | |
| TTTCTTAGGATCCAAGGTGA+TGG | + | tig0025333:51982-52001 | Msa1422030:intron | 40.0% | |
| ACCTTGGATCCTAAGAAACT+TGG | - | tig0025333:51984-52003 | Msa1422020:CDS | 40.0% | |
| ACCAAGTTTCTTAGGATCCA+AGG | + | tig0025333:51988-52007 | Msa1422030:intron | 40.0% | |
| ! | ACTAGAGCACCAAGTTTCTT+AGG | + | tig0025333:51996-52015 | Msa1422030:intron | 40.0% |
| !! | GGATTCCTTTGAGATATGGA+TGG | - | tig0025333:52132-52151 | Msa1422020:exon | 40.0% |
| ACTCAGAAGGCAAGATGATT+AGG | - | tig0025333:52178-52197 | Msa1422020:five_prime_UTR | 40.0% | |
| ! | GGACAAAGATCATGTTGGTT+CGG | - | tig0025333:52230-52249 | Msa1422020:five_prime_UTR | 40.0% |
| GTTCAAAGTCCATCACACGA+CGG | - | tig0025333:49504-49523 | Msa1422020:CDS | 45.0% | |
| !!! | GTTTTTTCACCGTCGTGTGA+TGG | + | tig0025333:49516-49535 | None:intergenic | 45.0% |
| !! | AGCAACAGGTGTTGAATGGA+AGG | + | tig0025333:49550-49569 | None:intergenic | 45.0% |
| !! | GTGAAGCAACAGGTGTTGAA+TGG | + | tig0025333:49554-49573 | None:intergenic | 45.0% |
| GAATGATGAGGTGAAGCAAC+AGG | + | tig0025333:49564-49583 | None:intergenic | 45.0% | |
| TTGGAGAAAGAGAGGAATGG+TGG | - | tig0025333:49690-49709 | Msa1422020:CDS | 45.0% | |
| GAAGCCCAAGATTGTGATCA+AGG | - | tig0025333:49809-49828 | Msa1422020:intron | 45.0% | |
| GTCATGACTCATGAACAGCT+TGG | - | tig0025333:50590-50609 | Msa1422020:CDS | 45.0% | |
| GGGTTGAAATCTGATTGGGT+TGG | - | tig0025333:50620-50639 | Msa1422020:CDS | 45.0% | |
| !! | CAAAGAAAGTGCCAGTGTTG+CGG | + | tig0025333:50947-50966 | None:intergenic | 45.0% |
| CACAGTGAGTTTACATTGGG+AGG | - | tig0025333:51273-51292 | Msa1422020:intron | 45.0% | |
| GAGTCATAGATTGGTGAGTG+TGG | - | tig0025333:51788-51807 | Msa1422020:CDS | 45.0% | |
| AAGGTCCCTTTGTATGGAAG+TGG | - | tig0025333:51825-51844 | Msa1422020:CDS | 45.0% | |
| CTTGCACCACTTCCATACAA+AGG | + | tig0025333:51834-51853 | None:intergenic | 45.0% | |
| ! | TTCAATGGCACTGGAACTGT+AGG | + | tig0025333:51879-51898 | None:intergenic | 45.0% |
| GATACAGCTCAGAACTCAGA+AGG | - | tig0025333:52165-52184 | Msa1422020:five_prime_UTR | 45.0% | |
| !! | TTAATTAATATAATCAAAAT+GGG | + | tig0025333:52334-52353 | Msa1422030:intron | 5.0% |
| !! | ATTAATTAATATAATCAAAA+TGG | + | tig0025333:52335-52354 | Msa1422030:intron | 5.0% |
| !! | TAGTATAGTGGACGACGTGG+TGG | + | tig0025333:49483-49502 | None:intergenic | 50.0% |
| !! | ACGTAGTATAGTGGACGACG+TGG | + | tig0025333:49486-49505 | None:intergenic | 50.0% |
| GAACATGTTACCGTCCAAGC+TGG | - | tig0025333:50858-50877 | Msa1422020:intron | 50.0% | |
| TGTTACCGTCCAAGCTGGTT+CGG | - | tig0025333:50863-50882 | Msa1422020:intron | 50.0% | |
| !! | AAGCTGGTTCGGATTCGACT+GGG | - | tig0025333:50874-50893 | Msa1422020:intron | 50.0% |
| CGCAACACTGGCACTTTCTT+TGG | - | tig0025333:50945-50964 | Msa1422020:intron | 50.0% | |
| ! | CCAAGGGTGTAGCTGAAACA+TGG | + | tig0025333:50974-50993 | None:intergenic | 50.0% |
| CCATGTTTCAGCTACACCCT+TGG | - | tig0025333:50971-50990 | Msa1422020:intron | 50.0% | |
| ATTGGTGAGTGTGGCAGTGA+TGG | - | tig0025333:51797-51816 | Msa1422020:CDS | 50.0% | |
| TTGGTGAGTGTGGCAGTGAT+GGG | - | tig0025333:51798-51817 | Msa1422020:CDS | 50.0% | |
| GGTAGCAAGGTCCCTTTGTA+TGG | - | tig0025333:51819-51838 | Msa1422020:CDS | 50.0% | |
| TGCAAGCCTTAGCAGCACAA+CGG | - | tig0025333:51848-51867 | Msa1422020:CDS | 50.0% | |
| ! | CGACGTGGTGGTGATCTTGT+TGG | + | tig0025333:49471-49490 | None:intergenic | 55.0% |
| CGAATCCGAACCAGCTTGGA+CGG | + | tig0025333:50871-50890 | None:intergenic | 55.0% | |
| CAGTCGAATCCGAACCAGCT+TGG | + | tig0025333:50875-50894 | None:intergenic | 55.0% | |
| !! | CAAGCTGGTTCGGATTCGAC+TGG | - | tig0025333:50873-50892 | Msa1422020:intron | 55.0% |
| !! | AGCTGGTTCGGATTCGACTG+GGG | - | tig0025333:50875-50894 | Msa1422020:intron | 55.0% |
| !! | TGTGGCAGTGATGGGTAGCA+AGG | - | tig0025333:51806-51825 | Msa1422020:CDS | 55.0% |
| GCAAGCCTTAGCAGCACAAC+GGG | - | tig0025333:51849-51868 | Msa1422020:CDS | 55.0% | |
| ! | GCATACCCGTTGTGCTGCTA+AGG | + | tig0025333:51857-51876 | None:intergenic | 55.0% |
| ! | TGGTTCGGATTCGACTGGGG+TGG | - | tig0025333:50878-50897 | Msa1422020:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025333 | gene | 49179 | 52364 | 49179 | ID=Msa1422020;Name=Msa1422020 |
| tig0025333 | mRNA | 49179 | 52364 | 49179 | ID=Msa1422020-mRNA-1;Parent=Msa1422020;Name=Msa1422020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=232|0.33|0.75|0.75|1|1|4|318|315 |
| tig0025333 | exon | 49179 | 49781 | 49179 | ID=Msa1422020-mRNA-1:exon:2391;Parent=Msa1422020-mRNA-1 |
| tig0025333 | exon | 50512 | 50697 | 50512 | ID=Msa1422020-mRNA-1:exon:2390;Parent=Msa1422020-mRNA-1 |
| tig0025333 | exon | 50879 | 50935 | 50879 | ID=Msa1422020-mRNA-1:exon:2389;Parent=Msa1422020-mRNA-1 |
| tig0025333 | exon | 51713 | 52364 | 51713 | ID=Msa1422020-mRNA-1:exon:2388;Parent=Msa1422020-mRNA-1 |
| tig0025333 | five_prime_UTR | 52133 | 52364 | 52133 | ID=Msa1422020-mRNA-1:five_prime_utr;Parent=Msa1422020-mRNA-1 |
| tig0025333 | CDS | 51713 | 52132 | 51713 | ID=Msa1422020-mRNA-1:cds;Parent=Msa1422020-mRNA-1 |
| tig0025333 | CDS | 50879 | 50935 | 50879 | ID=Msa1422020-mRNA-1:cds;Parent=Msa1422020-mRNA-1 |
| tig0025333 | CDS | 50512 | 50697 | 50512 | ID=Msa1422020-mRNA-1:cds;Parent=Msa1422020-mRNA-1 |
| tig0025333 | CDS | 49497 | 49781 | 49497 | ID=Msa1422020-mRNA-1:cds;Parent=Msa1422020-mRNA-1 |
| tig0025333 | three_prime_UTR | 49179 | 49496 | 49179 | ID=Msa1422020-mRNA-1:three_prime_utr;Parent=Msa1422020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
