AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0998010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998010 MtrunA17_Chr6g0483521 93.274 223 13 2 1 221 1 223 8.05e-109 311
Msa0998010 MtrunA17_Chr6g0483561 68.085 235 59 6 1 221 1 233 7.91e-71 216
Msa0998010 MtrunA17_Chr6g0483581 66.239 234 65 4 1 221 1 233 4.17e-66 203
Msa0998010 MtrunA17_Chr6g0483511 64.706 204 51 6 1 202 1 185 1.77e-64 198
Msa0998010 MtrunA17_Chr2g0290831 54.667 75 34 0 1 75 1 75 2.79e-19 79.0
Msa0998010 MtrunA17_Chr5g0438551 50.000 92 43 2 3 91 2 93 3.51e-19 80.1
Msa0998010 MtrunA17_Chr3g0120551 48.000 75 39 0 2 76 3 77 8.70e-19 78.6
Msa0998010 MtrunA17_Chr3g0120541 48.148 81 41 1 2 82 3 82 4.91e-17 73.9
Msa0998010 MtrunA17_Chr3g0120531 47.887 71 36 1 2 71 3 73 1.55e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998010 AT3G20180.3 50.000 82 41 0 1 82 1 82 6.52e-18 77.0
Msa0998010 AT3G20180.2 47.561 82 43 0 1 82 20 101 7.52e-17 74.7
Msa0998010 AT4G05030.2 45.946 74 40 0 1 74 1 74 1.08e-15 69.7
Msa0998010 AT3G20180.4 48.101 79 41 0 4 82 2 80 1.08e-15 70.9
Msa0998010 AT5G48290.1 39.130 92 56 0 1 92 1 92 1.40e-15 72.4
Msa0998010 AT3G20180.1 48.684 76 39 0 7 82 3 78 1.80e-15 70.5
Msa0998010 AT4G05030.1 46.479 71 38 0 4 74 37 107 1.12e-14 68.2
Msa0998010 AT3G07600.1 43.678 87 49 0 1 87 1 87 2.21e-14 68.6
Msa0998010 AT5G48290.3 32.143 112 56 1 1 92 1 112 4.24e-11 60.5
Msa0998010 AT5G48290.2 36.585 82 52 0 11 92 1 82 4.82e-11 59.7

Find 64 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTCTTCCACACTTAAAA+TGG 0.212338 6_4:-78220060 None:intergenic
TTTGGTGAAGGAGGCTTCTT+AGG 0.249902 6_4:-78220365 None:intergenic
ATGGAGCAAGGTTCAGGATT+TGG 0.271607 6_4:-78220497 None:intergenic
ATGGAGCAAGGTTCAGGATT+TGG 0.271607 6_4:+78220595 Msa0998010:three_prime_UTR
TCATAACAAACCGCATAATT+AGG 0.283146 6_4:-78220473 None:intergenic
TTCGCACTTGTCTTCTGCTT+TGG 0.289747 6_4:-78218453 None:intergenic
TTACACTCACAACAACTCTT+TGG 0.313053 6_4:-78220293 None:intergenic
AATTAACAAACCACATAATT+AGG 0.316132 6_4:+78220623 Msa0998010:three_prime_UTR
AAATTTAGTGATTAAAGAAT+TGG 0.317850 6_4:+78220829 Msa0998010:three_prime_UTR
TCACAACAACTCCTTGGATT+AGG 0.339047 6_4:-78220317 None:intergenic
TGGAGCAAGGTTCAGGATTT+GGG 0.344784 6_4:-78220496 None:intergenic
TGGAGCAAGGTTCAGGATTT+GGG 0.344784 6_4:+78220596 Msa0998010:three_prime_UTR
CATCTCAACAAGTAAGAATA+AGG 0.348425 6_4:+78220907 Msa0998010:three_prime_UTR
GGTGGATAAGGGTTACAATA+AGG 0.360536 6_4:-78220449 None:intergenic
GCATAATTAGGTGGTGGATA+AGG 0.365962 6_4:-78220461 None:intergenic
GGGTTACAATAAGGTTGATA+TGG 0.366283 6_4:-78220440 None:intergenic
TAAATTAGCTACATTGTCAT+TGG 0.378025 6_4:-78218357 None:intergenic
CGTGGATAAGGGTTACAATA+AGG 0.378532 6_4:+78220647 Msa0998010:three_prime_UTR
CACATGATGGAGCAAGGTTC+AGG 0.380976 6_4:-78220503 None:intergenic
ACATAATTAGGTCGTGGATA+AGG 0.384685 6_4:+78220635 Msa0998010:three_prime_UTR
CATAATTAGGTGGTGGATAA+GGG 0.391376 6_4:-78220460 None:intergenic
CTTCTGCTTTGGAATTGAGC+TGG 0.401133 6_4:-78218442 None:intergenic
CATAATTAGGTCGTGGATAA+GGG 0.408836 6_4:+78220636 Msa0998010:three_prime_UTR
ATAATGATGGAGCAAGGTTC+AGG 0.413294 6_4:+78220589 Msa0998010:three_prime_UTR
GATAGTTATAAAGTTGCAAA+TGG 0.417360 6_4:+78218693 Msa0998010:CDS
GGGTTACAATAAGGTTGAAA+TGG 0.424178 6_4:+78220656 Msa0998010:three_prime_UTR
TTCAATAAAATTTGCAAGCA+TGG 0.428519 6_4:+78220696 Msa0998010:three_prime_UTR
TGCATATGCCCTAGGTGTTA+TGG 0.433423 6_4:+78220410 Msa0998010:CDS
TTCAATAAAATTTGCAAGCA+CGG 0.464716 6_4:+78220541 Msa0998010:three_prime_UTR
TGCACCACTGAGGACATTGT+TGG 0.480174 6_4:-78220391 None:intergenic
GCACCACTGAGGACATTGTT+GGG 0.491095 6_4:-78220390 None:intergenic
AGGTGTGACTTCAGTATCCT+TGG 0.494388 6_4:+78219944 Msa0998010:intron
CATTGTCATTGGTTTGTGAA+AGG 0.494999 6_4:-78218346 None:intergenic
ATCTTTATCATCTCCTTCCA+AGG 0.495879 6_4:-78219961 None:intergenic
TTGTTGTCACAACAACTCCT+TGG 0.498342 6_4:-78220323 None:intergenic
TTGTTTGTTTCAATTAAGCT+AGG 0.504012 6_4:+78218526 Msa0998010:five_prime_UTR
TTATCCACGACCTAATTATG+TGG 0.509447 6_4:-78220633 None:intergenic
TTTCAATTAAGCTAGGATGA+AGG 0.511613 6_4:+78218533 Msa0998010:exon
GCAGTTTCATAAAATTTACA+TGG 0.530325 6_4:-78220957 None:intergenic
TCTTGCAACACTCATTGTAA+TGG 0.531057 6_4:+78220191 Msa0998010:CDS
ATACTTGTATACAATAATGA+TGG 0.534366 6_4:+78220576 Msa0998010:three_prime_UTR
CATAGTTCTTACTCACATGA+TGG 0.542275 6_4:-78220516 None:intergenic
AGCCCTCAAAACTGCTGCTG+AGG 0.567072 6_4:+78218738 Msa0998010:CDS
AACTGTGTCTACATTATCAC+CGG 0.572592 6_4:-78219997 None:intergenic
AAAACTGCTGCTGAGGTCAA+AGG 0.573067 6_4:+78218745 Msa0998010:CDS
TTAGTGATGAAAATTTAGAG+AGG 0.577600 6_4:+78220770 Msa0998010:three_prime_UTR
CTCAGTGGTGCATATGCCCT+AGG 0.593111 6_4:+78220402 Msa0998010:CDS
TTATCCACCACCTAATTATG+CGG 0.598083 6_4:+78220463 Msa0998010:CDS
GAGCATAACCATAACACCTA+GGG 0.599868 6_4:-78220418 None:intergenic
CAAACCACATAATTAGGTCG+TGG 0.606669 6_4:+78220629 Msa0998010:three_prime_UTR
ATATGTTATGATATATACAT+TGG 0.609455 6_4:-78218413 None:intergenic
GTGACTTCAGTATCCTTGGA+AGG 0.612544 6_4:+78219948 Msa0998010:CDS
CTTACTCACATGATGGAGCA+AGG 0.612606 6_4:-78220509 None:intergenic
GTGAGTGTAAACCTAATCCA+AGG 0.616162 6_4:+78220306 Msa0998010:CDS
CAAACCGCATAATTAGGTGG+TGG 0.616464 6_4:-78220467 None:intergenic
AAAGATAAGATATCTGTCAC+CGG 0.627820 6_4:+78219978 Msa0998010:CDS
TATACAATAATGATGGAGCA+AGG 0.631525 6_4:+78220583 Msa0998010:three_prime_UTR
GGAGCATAACCATAACACCT+AGG 0.631642 6_4:-78220419 None:intergenic
TAACAAACCGCATAATTAGG+TGG 0.663643 6_4:-78220470 None:intergenic
TGTGGAAGTGCAAAATGTGA+TGG 0.668591 6_4:+78220233 Msa0998010:CDS
TGTGACAACAAGAAGTGTGA+TGG 0.683170 6_4:+78220335 Msa0998010:CDS
AAACCCAACAATGTCCTCAG+TGG 0.700481 6_4:+78220387 Msa0998010:CDS
AGAGGTGAAGAAGAAAACCG+AGG 0.721257 6_4:+78220076 Msa0998010:CDS
CTAGGGCATATGCACCACTG+AGG 0.771168 6_4:-78220401 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTAGTTTTTTTTTTTTTT+TGG + chr6_4:78218301-78218320 Msa0998010:five_prime_UTR 10.0%
!! TTAACAAACTATTTATTAAA+TGG + chr6_4:78218656-78218675 Msa0998010:intron 10.0%
!!! TCTATATTTTTTTTGAATTA+TGG + chr6_4:78218785-78218804 Msa0998010:intron 10.0%
!! CAAAAAAAAAAATATTTAAG+GGG + chr6_4:78218979-78218998 Msa0998010:intron 10.0%
!!! TTTGATATTAATTTTATACT+AGG - chr6_4:78219241-78219260 None:intergenic 10.0%
!!! AATTTTTTCTAATGATTATT+TGG - chr6_4:78219515-78219534 None:intergenic 10.0%
!!! AGTTTTTTTTTTTTTTTGGA+AGG + chr6_4:78218305-78218324 Msa0998010:five_prime_UTR 15.0%
!! ATATGTTATGATATATACAT+TGG - chr6_4:78218416-78218435 None:intergenic 15.0%
!! TGAATTATGGATTTAAATTA+TGG + chr6_4:78218798-78218817 Msa0998010:intron 15.0%
!! GAATTATGGATTTAAATTAT+GGG + chr6_4:78218799-78218818 Msa0998010:intron 15.0%
!!! TTTTTTTGGTTGTATATAAA+AGG + chr6_4:78219106-78219125 Msa0998010:intron 15.0%
!!! TTGTATACAATAATCTTTTA+AGG + chr6_4:78220735-78220754 Msa0998010:three_prime_UTR 15.0%
!! AAATTTAGTGATTAAAGAAT+TGG + chr6_4:78220829-78220848 Msa0998010:three_prime_UTR 15.0%
!! ACAAAATAATTTAGGAAAAC+CGG - chr6_4:78219006-78219025 None:intergenic 20.0%
!! AAAATCATGAGATTTATTGA+GGG - chr6_4:78219059-78219078 None:intergenic 20.0%
!! TATGATTTCAATCTTACATA+TGG + chr6_4:78219172-78219191 Msa0998010:intron 20.0%
!! ATGATTTCAATCTTACATAT+GGG + chr6_4:78219173-78219192 Msa0998010:intron 20.0%
!! TGGGTATATATGAAAAAATT+TGG + chr6_4:78219192-78219211 Msa0998010:intron 20.0%
!! ATACTTGTATACAATAATGA+TGG + chr6_4:78220576-78220595 Msa0998010:three_prime_UTR 20.0%
!! AATTAACAAACCACATAATT+AGG + chr6_4:78220623-78220642 Msa0998010:three_prime_UTR 20.0%
!!! AAATTTTATTGAAGGCATTA+TGG - chr6_4:78220689-78220708 None:intergenic 20.0%
! TAAATTAGCTACATTGTCAT+TGG - chr6_4:78218360-78218379 None:intergenic 25.0%
!!! GCTTCTTTTATTTTTCTGAT+TGG - chr6_4:78218497-78218516 None:intergenic 25.0%
! TTGTTTGTTTCAATTAAGCT+AGG + chr6_4:78218526-78218545 Msa0998010:five_prime_UTR 25.0%
! GATAGTTATAAAGTTGCAAA+TGG + chr6_4:78218693-78218712 Msa0998010:CDS 25.0%
! AAAAAAATATTTAAGGGGAC+CGG + chr6_4:78218984-78219003 Msa0998010:intron 25.0%
!!! TCCTAAATTATTTTGTTCTC+AGG + chr6_4:78219010-78219029 Msa0998010:intron 25.0%
! ACCTGAGAACAAAATAATTT+AGG - chr6_4:78219014-78219033 None:intergenic 25.0%
! GAAAATCATGAGATTTATTG+AGG - chr6_4:78219060-78219079 None:intergenic 25.0%
! GATTATTTGGTTATGTTCTT+TGG - chr6_4:78219502-78219521 None:intergenic 25.0%
! TAGAGATAAACACATATGTT+CGG - chr6_4:78219744-78219763 None:intergenic 25.0%
!!! TTCTTTCTTTTTTTCTTCCT+CGG - chr6_4:78220096-78220115 None:intergenic 25.0%
! AGAAGAAAAGAAAAAGATGA+TGG + chr6_4:78220133-78220152 Msa0998010:CDS 25.0%
! TTCAATAAAATTTGCAAGCA+CGG + chr6_4:78220541-78220560 Msa0998010:three_prime_UTR 25.0%
!! ATGCTTGCAAATTTTATTGA+AGG - chr6_4:78220697-78220716 None:intergenic 25.0%
! TTCAATAAAATTTGCAAGCA+TGG + chr6_4:78220541-78220560 Msa0998010:three_prime_UTR 25.0%
! TTAGTGATGAAAATTTAGAG+AGG + chr6_4:78220770-78220789 Msa0998010:three_prime_UTR 25.0%
! GCAGTTTCATAAAATTTACA+TGG - chr6_4:78220960-78220979 None:intergenic 25.0%
TTTCAATTAAGCTAGGATGA+AGG + chr6_4:78218533-78218552 Msa0998010:exon 30.0%
!! AGTTTGCTTTTGTTAGAAGT+AGG + chr6_4:78218946-78218965 Msa0998010:intron 30.0%
!!! GTAAACTCTCACTCTTTTTT+TGG + chr6_4:78219092-78219111 Msa0998010:intron 30.0%
! AGAGGTTATATGAACTTTTG+TGG + chr6_4:78219131-78219150 Msa0998010:intron 30.0%
CAAAACAACGACATAATTAG+CGG + chr6_4:78219257-78219276 Msa0998010:intron 30.0%
ACAATCAATCATGTTTGTGT+GGG - chr6_4:78219356-78219375 None:intergenic 30.0%
TCCAAAATACATGCATACAT+AGG + chr6_4:78219924-78219943 Msa0998010:intron 30.0%
! ACCTATGTATGCATGTATTT+TGG - chr6_4:78219928-78219947 None:intergenic 30.0%
AAAGATAAGATATCTGTCAC+CGG + chr6_4:78219978-78219997 Msa0998010:CDS 30.0%
TCATAACAAACCGCATAATT+AGG - chr6_4:78220476-78220495 None:intergenic 30.0%
! GTGCTTGCAAATTTTATTGA+AGG - chr6_4:78220542-78220561 None:intergenic 30.0%
! TATACAATAATGATGGAGCA+AGG + chr6_4:78220583-78220602 Msa0998010:three_prime_UTR 30.0%
CATCTCAACAAGTAAGAATA+AGG + chr6_4:78220907-78220926 Msa0998010:three_prime_UTR 30.0%
!! CATTGTCATTGGTTTGTGAA+AGG - chr6_4:78218349-78218368 None:intergenic 35.0%
GGTTGTATATAAAAGGTGAG+AGG + chr6_4:78219113-78219132 Msa0998010:intron 35.0%
CACAATCAATCATGTTTGTG+TGG - chr6_4:78219357-78219376 None:intergenic 35.0%
ATCTTTATCATCTCCTTCCA+AGG - chr6_4:78219964-78219983 None:intergenic 35.0%
AACTGTGTCTACATTATCAC+CGG - chr6_4:78220000-78220019 None:intergenic 35.0%
!! GAACTTTTTCTTCAGCATGT+TGG - chr6_4:78220030-78220049 None:intergenic 35.0%
!! GCATGTCGTATTGTTTTGTT+TGG + chr6_4:78220158-78220177 Msa0998010:CDS 35.0%
TCTTGCAACACTCATTGTAA+TGG + chr6_4:78220191-78220210 Msa0998010:CDS 35.0%
AAGTGTGAAAAATGCACATG+TGG + chr6_4:78220215-78220234 Msa0998010:CDS 35.0%
TTACACTCACAACAACTCTT+TGG - chr6_4:78220296-78220315 None:intergenic 35.0%
!! GGGTTACAATAAGGTTGATA+TGG - chr6_4:78220443-78220462 None:intergenic 35.0%
!! CATAATTAGGTGGTGGATAA+GGG - chr6_4:78220463-78220482 None:intergenic 35.0%
TTATCCACCACCTAATTATG+CGG + chr6_4:78220463-78220482 Msa0998010:CDS 35.0%
TAACAAACCGCATAATTAGG+TGG - chr6_4:78220473-78220492 None:intergenic 35.0%
CATAGTTCTTACTCACATGA+TGG - chr6_4:78220519-78220538 None:intergenic 35.0%
TTATCCACGACCTAATTATG+TGG - chr6_4:78220636-78220655 None:intergenic 35.0%
ACATAATTAGGTCGTGGATA+AGG + chr6_4:78220635-78220654 Msa0998010:three_prime_UTR 35.0%
CATAATTAGGTCGTGGATAA+GGG + chr6_4:78220636-78220655 Msa0998010:three_prime_UTR 35.0%
GGGTTACAATAAGGTTGAAA+TGG + chr6_4:78220656-78220675 Msa0998010:three_prime_UTR 35.0%
CTTCAAAATCCGCAATATCG+TGG - chr6_4:78218843-78218862 None:intergenic 40.0%
TCGTTCACACGAGAATTAAG+TGG - chr6_4:78219429-78219448 None:intergenic 40.0%
!! GAAGAAGCACTAGCTAAAAC+TGG - chr6_4:78219878-78219897 None:intergenic 40.0%
!! CTGTGTCACCATTTTAAGTG+TGG + chr6_4:78220052-78220071 Msa0998010:CDS 40.0%
!! CACCATTTTAAGTGTGGAAG+AGG + chr6_4:78220058-78220077 Msa0998010:CDS 40.0%
CACCTCTTCCACACTTAAAA+TGG - chr6_4:78220063-78220082 None:intergenic 40.0%
! TGTGGAAGTGCAAAATGTGA+TGG + chr6_4:78220233-78220252 Msa0998010:CDS 40.0%
GTGAGTGTAAACCTAATCCA+AGG + chr6_4:78220306-78220325 Msa0998010:CDS 40.0%
TCACAACAACTCCTTGGATT+AGG - chr6_4:78220320-78220339 None:intergenic 40.0%
TTGTTGTCACAACAACTCCT+TGG - chr6_4:78220326-78220345 None:intergenic 40.0%
! TGTGACAACAAGAAGTGTGA+TGG + chr6_4:78220335-78220354 Msa0998010:CDS 40.0%
!!! CATTGTTGGGTTTTTGGTGA+AGG - chr6_4:78220380-78220399 None:intergenic 40.0%
! TGAGGACATTGTTGGGTTTT+TGG - chr6_4:78220386-78220405 None:intergenic 40.0%
GAGCATAACCATAACACCTA+GGG - chr6_4:78220421-78220440 None:intergenic 40.0%
GGTGGATAAGGGTTACAATA+AGG - chr6_4:78220452-78220471 None:intergenic 40.0%
!! GCATAATTAGGTGGTGGATA+AGG - chr6_4:78220464-78220483 None:intergenic 40.0%
! ATAATGATGGAGCAAGGTTC+AGG + chr6_4:78220589-78220608 Msa0998010:three_prime_UTR 40.0%
CAAACCACATAATTAGGTCG+TGG + chr6_4:78220629-78220648 Msa0998010:three_prime_UTR 40.0%
CGTGGATAAGGGTTACAATA+AGG + chr6_4:78220647-78220666 Msa0998010:three_prime_UTR 40.0%
!! CTTCTGCTTTGGAATTGAGC+TGG - chr6_4:78218445-78218464 None:intergenic 45.0%
TTCGCACTTGTCTTCTGCTT+TGG - chr6_4:78218456-78218475 None:intergenic 45.0%
AAAACTGCTGCTGAGGTCAA+AGG + chr6_4:78218745-78218764 Msa0998010:CDS 45.0%
CAATATCGTGGTCCCAATTG+CGG - chr6_4:78218831-78218850 None:intergenic 45.0%
CAATTGGGACCACGATATTG+CGG + chr6_4:78218831-78218850 Msa0998010:intron 45.0%
AGGTGTGACTTCAGTATCCT+TGG + chr6_4:78219944-78219963 Msa0998010:intron 45.0%
GTGACTTCAGTATCCTTGGA+AGG + chr6_4:78219948-78219967 Msa0998010:CDS 45.0%
AGAGGTGAAGAAGAAAACCG+AGG + chr6_4:78220076-78220095 Msa0998010:CDS 45.0%
TTTGGTGAAGGAGGCTTCTT+AGG - chr6_4:78220368-78220387 None:intergenic 45.0%
!!! TGTTGGGTTTTTGGTGAAGG+AGG - chr6_4:78220377-78220396 None:intergenic 45.0%
AAACCCAACAATGTCCTCAG+TGG + chr6_4:78220387-78220406 Msa0998010:CDS 45.0%
TGCATATGCCCTAGGTGTTA+TGG + chr6_4:78220410-78220429 Msa0998010:CDS 45.0%
GGAGCATAACCATAACACCT+AGG - chr6_4:78220422-78220441 None:intergenic 45.0%
CAAACCGCATAATTAGGTGG+TGG - chr6_4:78220470-78220489 None:intergenic 45.0%
TGGAGCAAGGTTCAGGATTT+GGG - chr6_4:78220596-78220615 None:intergenic 45.0%
ATGGAGCAAGGTTCAGGATT+TGG - chr6_4:78220595-78220614 None:intergenic 45.0%
! CTTACTCACATGATGGAGCA+AGG - chr6_4:78220512-78220531 None:intergenic 45.0%
ATGGAGCAAGGTTCAGGATT+TGG + chr6_4:78220595-78220614 Msa0998010:three_prime_UTR 45.0%
TGGAGCAAGGTTCAGGATTT+GGG + chr6_4:78220596-78220615 Msa0998010:three_prime_UTR 45.0%
!! AACAAAAAAAAAAATATTTA+AGG + chr6_4:78218977-78218996 Msa0998010:intron 5.0%
!! ACAAAAAAAAAAATATTTAA+GGG + chr6_4:78218978-78218997 Msa0998010:intron 5.0%
!!! TTTTTTACTAATTTTTTTAT+AGG + chr6_4:78220881-78220900 Msa0998010:three_prime_UTR 5.0%
!! GACCTCAGCAGCAGTTTTGA+GGG - chr6_4:78218743-78218762 None:intergenic 50.0%
! TGACCTCAGCAGCAGTTTTG+AGG - chr6_4:78218744-78218763 None:intergenic 50.0%
! TTATGGGCTGCAACCGCAAT+TGG + chr6_4:78218815-78218834 Msa0998010:intron 50.0%
! TATGGGCTGCAACCGCAATT+GGG + chr6_4:78218816-78218835 Msa0998010:intron 50.0%
GCACCACTGAGGACATTGTT+GGG - chr6_4:78220393-78220412 None:intergenic 50.0%
TGCACCACTGAGGACATTGT+TGG - chr6_4:78220394-78220413 None:intergenic 50.0%
! CACATGATGGAGCAAGGTTC+AGG - chr6_4:78220506-78220525 None:intergenic 50.0%
AGCCCTCAAAACTGCTGCTG+AGG + chr6_4:78218738-78218757 Msa0998010:CDS 55.0%
CTAGGGCATATGCACCACTG+AGG - chr6_4:78220404-78220423 None:intergenic 55.0%
CTCAGTGGTGCATATGCCCT+AGG + chr6_4:78220402-78220421 Msa0998010:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 78218257 78221023 78218257 ID=Msa0998010;Name=Msa0998010
chr6_4 mRNA 78218257 78221023 78218257 ID=Msa0998010-mRNA-1;Parent=Msa0998010;Name=Msa0998010-mRNA-1;_AED=0.16;_eAED=0.16;_QI=292|1|1|1|0.5|0.33|3|497|221
chr6_4 exon 78218257 78218554 78218257 ID=Msa0998010-mRNA-1:exon:14805;Parent=Msa0998010-mRNA-1
chr6_4 exon 78218688 78218766 78218688 ID=Msa0998010-mRNA-1:exon:14806;Parent=Msa0998010-mRNA-1
chr6_4 exon 78219946 78221023 78219946 ID=Msa0998010-mRNA-1:exon:14807;Parent=Msa0998010-mRNA-1
chr6_4 five_prime_UTR 78218257 78218548 78218257 ID=Msa0998010-mRNA-1:five_prime_utr;Parent=Msa0998010-mRNA-1
chr6_4 CDS 78218549 78218554 78218549 ID=Msa0998010-mRNA-1:cds;Parent=Msa0998010-mRNA-1
chr6_4 CDS 78218688 78218766 78218688 ID=Msa0998010-mRNA-1:cds;Parent=Msa0998010-mRNA-1
chr6_4 CDS 78219946 78220526 78219946 ID=Msa0998010-mRNA-1:cds;Parent=Msa0998010-mRNA-1
chr6_4 three_prime_UTR 78220527 78221023 78220527 ID=Msa0998010-mRNA-1:three_prime_utr;Parent=Msa0998010-mRNA-1
Gene Sequence

>Msa0998010

ATGAAGCAAAAGATAGTTATAAAGTTGCAAATGGATTGTGAGAAATGCAGAAACAAAGCCCTCAAAACTGCTGCTGAGGTCAAAGGTGTGACTTCAGTATCCTTGGAAGGAGATGATAAAGATAAGATATCTGTCACCGGTGATAATGTAGACACAGTTTGCTTAGCCAACATGCTGAAGAAAAAGTTCAACTGTGTCACCATTTTAAGTGTGGAAGAGGTGAAGAAGAAAACCGAGGAAGAAAAAAAGAAAGAAGAAGAAAAGAAAAAAGAAGAAGAAAAGAAAAAGATGATGGAAGCATGTCGTATTGTTTTGTTTGGTTCTTGCAAGTCTTGCAACACTCATTGTAATGGTAAGTGTGAAAAATGCACATGTGGAAGTGCAAAATGTGATGGCATACAATGTGTCACAATTTGCTTCAAGTGTGAAAATCCAAAGAGTTGTTGTGAGTGTAAACCTAATCCAAGGAGTTGTTGTGACAACAAGAAGTGTGATGGTTGCACTCCTAAGAAGCCTCCTTCACCAAAAACCCAACAATGTCCTCAGTGGTGCATATGCCCTAGGTGTTATGGTTATGCTCCATATCAACCTTATTGTAACCCTTATCCACCACCTAATTATGCGGTTTGTTATGACCCAAATCCTGAACCTTGCTCCATCATGTGA
Protein sequence

>Msa0998010

MKQKIVIKLQMDCEKCRNKALKTAAEVKGVTSVSLEGDDKDKISVTGDNVDTVCLANMLKKKFNCVTILSVEEVKKKTEEEKKKEEEKKKEEEKKKMMEACRIVLFGSCKSCNTHCNGKCEKCTCGSAKCDGIQCVTICFKCENPKSCCECKPNPRSCCDNKKCDGCTPKKPPSPKTQQCPQWCICPRCYGYAPYQPYCNPYPPPNYAVCYDPNPEPCSIM*