AlfalfaGEDB | Msa0998010

M. sativa cultivar zhongmu-4 / Msa0998010

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998010	XP_003620380.2	93.274	223	13	2	1	221	1	223	8.75e-105	311

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998010	sp\|Q5PNZ7\|HIP46_ARATH	39.130	92	56	0	1	92	1	92	1.38e-14	72.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998010	A0A396HJD0	93.274	223	13	2	1	221	1	223	4.18e-105	311

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0998000	Msa0998010	0.813537	2.434171e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998010	MtrunA17_Chr6g0483521	93.274	223	13	2	1	221	1	223	8.05e-109	311
Msa0998010	MtrunA17_Chr6g0483561	68.085	235	59	6	1	221	1	233	7.91e-71	216
Msa0998010	MtrunA17_Chr6g0483581	66.239	234	65	4	1	221	1	233	4.17e-66	203
Msa0998010	MtrunA17_Chr6g0483511	64.706	204	51	6	1	202	1	185	1.77e-64	198
Msa0998010	MtrunA17_Chr2g0290831	54.667	75	34	0	1	75	1	75	2.79e-19	79.0
Msa0998010	MtrunA17_Chr5g0438551	50.000	92	43	2	3	91	2	93	3.51e-19	80.1
Msa0998010	MtrunA17_Chr3g0120551	48.000	75	39	0	2	76	3	77	8.70e-19	78.6
Msa0998010	MtrunA17_Chr3g0120541	48.148	81	41	1	2	82	3	82	4.91e-17	73.9
Msa0998010	MtrunA17_Chr3g0120531	47.887	71	36	1	2	71	3	73	1.55e-12	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998010	AT3G20180.3	50.000	82	41	0	1	82	1	82	6.52e-18	77.0
Msa0998010	AT3G20180.2	47.561	82	43	0	1	82	20	101	7.52e-17	74.7
Msa0998010	AT4G05030.2	45.946	74	40	0	1	74	1	74	1.08e-15	69.7
Msa0998010	AT3G20180.4	48.101	79	41	0	4	82	2	80	1.08e-15	70.9
Msa0998010	AT5G48290.1	39.130	92	56	0	1	92	1	92	1.40e-15	72.4
Msa0998010	AT3G20180.1	48.684	76	39	0	7	82	3	78	1.80e-15	70.5
Msa0998010	AT4G05030.1	46.479	71	38	0	4	74	37	107	1.12e-14	68.2
Msa0998010	AT3G07600.1	43.678	87	49	0	1	87	1	87	2.21e-14	68.6
Msa0998010	AT5G48290.3	32.143	112	56	1	1	92	1	112	4.24e-11	60.5
Msa0998010	AT5G48290.2	36.585	82	52	0	11	92	1	82	4.82e-11	59.7

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Find 64 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCTGCTGAGGTCAA+AGG	0.573067	6_4:+78218745	Msa0998010:CDS
AAACCCAACAATGTCCTCAG+TGG	0.700481	6_4:+78220387	Msa0998010:CDS
AAAGATAAGATATCTGTCAC+CGG	0.627820	6_4:+78219978	Msa0998010:CDS
AAATTTAGTGATTAAAGAAT+TGG	0.317850	6_4:+78220829	Msa0998010:three_prime_UTR
AACTGTGTCTACATTATCAC+CGG	0.572592	6_4:-78219997	None:intergenic
AATTAACAAACCACATAATT+AGG	0.316132	6_4:+78220623	Msa0998010:three_prime_UTR
ACATAATTAGGTCGTGGATA+AGG	0.384685	6_4:+78220635	Msa0998010:three_prime_UTR
AGAGGTGAAGAAGAAAACCG+AGG	0.721257	6_4:+78220076	Msa0998010:CDS
AGCCCTCAAAACTGCTGCTG+AGG	0.567072	6_4:+78218738	Msa0998010:CDS
AGGTGTGACTTCAGTATCCT+TGG	0.494388	6_4:+78219944	Msa0998010:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCAATTAAGCTAGGATGA+AGG	+	chr6_4:78218533-78218552	Msa0998010:exon	30.0%
CAAAACAACGACATAATTAG+CGG	+	chr6_4:78219257-78219276	Msa0998010:intron	30.0%
ACAATCAATCATGTTTGTGT+GGG	-	chr6_4:78219356-78219375	None:intergenic	30.0%
TCCAAAATACATGCATACAT+AGG	+	chr6_4:78219924-78219943	Msa0998010:intron	30.0%
AAAGATAAGATATCTGTCAC+CGG	+	chr6_4:78219978-78219997	Msa0998010:CDS	30.0%
TCATAACAAACCGCATAATT+AGG	-	chr6_4:78220476-78220495	None:intergenic	30.0%
CATCTCAACAAGTAAGAATA+AGG	+	chr6_4:78220907-78220926	Msa0998010:three_prime_UTR	30.0%
GGTTGTATATAAAAGGTGAG+AGG	+	chr6_4:78219113-78219132	Msa0998010:intron	35.0%
CACAATCAATCATGTTTGTG+TGG	-	chr6_4:78219357-78219376	None:intergenic	35.0%
ATCTTTATCATCTCCTTCCA+AGG	-	chr6_4:78219964-78219983	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	78218257	78221023	78218257	ID=Msa0998010;Name=Msa0998010
chr6_4	mRNA	78218257	78221023	78218257	ID=Msa0998010-mRNA-1;Parent=Msa0998010;Name=Msa0998010-mRNA-1;_AED=0.16;_eAED=0.16;_QI=292\|1\|1\|1\|0.5\|0.33\|3\|497\|221
chr6_4	exon	78218257	78218554	78218257	ID=Msa0998010-mRNA-1:exon:14805;Parent=Msa0998010-mRNA-1
chr6_4	exon	78218688	78218766	78218688	ID=Msa0998010-mRNA-1:exon:14806;Parent=Msa0998010-mRNA-1
chr6_4	exon	78219946	78221023	78219946	ID=Msa0998010-mRNA-1:exon:14807;Parent=Msa0998010-mRNA-1
chr6_4	five_prime_UTR	78218257	78218548	78218257	ID=Msa0998010-mRNA-1:five_prime_utr;Parent=Msa0998010-mRNA-1
chr6_4	CDS	78218549	78218554	78218549	ID=Msa0998010-mRNA-1:cds;Parent=Msa0998010-mRNA-1
chr6_4	CDS	78218688	78218766	78218688	ID=Msa0998010-mRNA-1:cds;Parent=Msa0998010-mRNA-1
chr6_4	CDS	78219946	78220526	78219946	ID=Msa0998010-mRNA-1:cds;Parent=Msa0998010-mRNA-1
chr6_4	three_prime_UTR	78220527	78221023	78220527	ID=Msa0998010-mRNA-1:three_prime_utr;Parent=Msa0998010-mRNA-1

Gene Sequence

>Msa0998010

ATGAAGCAAAAGATAGTTATAAAGTTGCAAATGGATTGTGAGAAATGCAGAAACAAAGCCCTCAAAACTGCTGCTGAGGTCAAAGGTGTGACTTCAGTATCCTTGGAAGGAGATGATAAAGATAAGATATCTGTCACCGGTGATAATGTAGACACAGTTTGCTTAGCCAACATGCTGAAGAAAAAGTTCAACTGTGTCACCATTTTAAGTGTGGAAGAGGTGAAGAAGAAAACCGAGGAAGAAAAAAAGAAAGAAGAAGAAAAGAAAAAAGAAGAAGAAAAGAAAAAGATGATGGAAGCATGTCGTATTGTTTTGTTTGGTTCTTGCAAGTCTTGCAACACTCATTGTAATGGTAAGTGTGAAAAATGCACATGTGGAAGTGCAAAATGTGATGGCATACAATGTGTCACAATTTGCTTCAAGTGTGAAAATCCAAAGAGTTGTTGTGAGTGTAAACCTAATCCAAGGAGTTGTTGTGACAACAAGAAGTGTGATGGTTGCACTCCTAAGAAGCCTCCTTCACCAAAAACCCAACAATGTCCTCAGTGGTGCATATGCCCTAGGTGTTATGGTTATGCTCCATATCAACCTTATTGTAACCCTTATCCACCACCTAATTATGCGGTTTGTTATGACCCAAATCCTGAACCTTGCTCCATCATGTGA

Protein sequence

>Msa0998010

MKQKIVIKLQMDCEKCRNKALKTAAEVKGVTSVSLEGDDKDKISVTGDNVDTVCLANMLKKKFNCVTILSVEEVKKKTEEEKKKEEEKKKEEEKKKMMEACRIVLFGSCKSCNTHCNGKCEKCTCGSAKCDGIQCVTICFKCENPKSCCECKPNPRSCCDNKKCDGCTPKKPPSPKTQQCPQWCICPRCYGYAPYQPYCNPYPPPNYAVCYDPNPEPCSIM*