Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999010 | RHN52866.1 | 97.966 | 639 | 13 | 0 | 1 | 639 | 54 | 692 | 0.0 | 1284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999010 | sp|Q94LW6|SUT35_ARATH | 61.342 | 626 | 233 | 3 | 10 | 633 | 15 | 633 | 0.0 | 787 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999010 | A0A396HHY9 | 97.966 | 639 | 13 | 0 | 1 | 639 | 54 | 692 | 0.0 | 1284 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0899280 | Msa0999010 | 0.907680 | 3.901161e-81 | -8.615850e-47 |
| Msa0927590 | Msa0999010 | 0.966439 | 6.376278e-126 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999010 | MtrunA17_Chr6g0485191 | 97.966 | 639 | 13 | 0 | 1 | 639 | 54 | 692 | 0.0 | 1284 |
| Msa0999010 | MtrunA17_Chr7g0260181 | 52.113 | 639 | 299 | 3 | 3 | 637 | 13 | 648 | 0.0 | 686 |
| Msa0999010 | MtrunA17_Chr1g0185231 | 51.724 | 638 | 301 | 4 | 3 | 636 | 15 | 649 | 0.0 | 678 |
| Msa0999010 | MtrunA17_Chr2g0331951 | 47.833 | 623 | 319 | 3 | 3 | 620 | 15 | 636 | 0.0 | 612 |
| Msa0999010 | MtrunA17_Chr4g0043931 | 46.215 | 634 | 335 | 4 | 6 | 636 | 16 | 646 | 0.0 | 600 |
| Msa0999010 | MtrunA17_Chr4g0004261 | 47.334 | 619 | 319 | 3 | 6 | 620 | 28 | 643 | 0.0 | 593 |
| Msa0999010 | MtrunA17_Chr5g0425251 | 44.586 | 628 | 342 | 3 | 5 | 627 | 25 | 651 | 0.0 | 582 |
| Msa0999010 | MtrunA17_Chr3g0115481 | 44.320 | 625 | 341 | 4 | 5 | 623 | 28 | 651 | 0.0 | 561 |
| Msa0999010 | MtrunA17_Chr4g0043951 | 51.163 | 516 | 251 | 1 | 21 | 536 | 33 | 547 | 0.0 | 556 |
| Msa0999010 | MtrunA17_Chr2g0278931 | 45.307 | 618 | 331 | 4 | 8 | 620 | 33 | 648 | 0.0 | 550 |
| Msa0999010 | MtrunA17_Chr5g0425241 | 43.067 | 613 | 337 | 5 | 23 | 623 | 34 | 646 | 6.97e-173 | 507 |
| Msa0999010 | MtrunA17_Chr3g0124381 | 42.978 | 591 | 327 | 5 | 42 | 624 | 62 | 650 | 1.61e-168 | 496 |
| Msa0999010 | MtrunA17_Chr3g0115461 | 42.288 | 577 | 319 | 6 | 60 | 623 | 77 | 652 | 1.89e-158 | 470 |
| Msa0999010 | MtrunA17_Chr3g0124371 | 35.167 | 600 | 372 | 8 | 42 | 624 | 57 | 656 | 4.89e-130 | 397 |
| Msa0999010 | MtrunA17_Chr7g0222631 | 35.702 | 591 | 366 | 9 | 52 | 636 | 67 | 649 | 5.00e-121 | 375 |
| Msa0999010 | MtrunA17_Chr1g0173031 | 49.345 | 229 | 110 | 2 | 6 | 234 | 28 | 250 | 9.78e-67 | 222 |
| Msa0999010 | MtrunA17_Chr1g0173031 | 55.789 | 95 | 42 | 0 | 294 | 388 | 250 | 344 | 5.64e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999010 | AT5G19600.1 | 61.342 | 626 | 233 | 3 | 10 | 633 | 15 | 633 | 0.0 | 787 |
| Msa0999010 | AT3G51895.1 | 54.416 | 634 | 281 | 4 | 5 | 631 | 13 | 645 | 0.0 | 733 |
| Msa0999010 | AT3G51895.2 | 54.416 | 634 | 281 | 4 | 5 | 631 | 58 | 690 | 0.0 | 733 |
| Msa0999010 | AT4G02700.1 | 50.627 | 638 | 311 | 2 | 1 | 634 | 1 | 638 | 0.0 | 653 |
| Msa0999010 | AT3G15990.1 | 48.470 | 621 | 313 | 3 | 4 | 620 | 23 | 640 | 0.0 | 613 |
| Msa0999010 | AT1G23090.1 | 47.742 | 620 | 316 | 4 | 6 | 620 | 2 | 618 | 0.0 | 592 |
| Msa0999010 | AT4G08620.1 | 46.569 | 612 | 321 | 3 | 17 | 623 | 30 | 640 | 0.0 | 572 |
| Msa0999010 | AT1G22150.1 | 44.640 | 625 | 332 | 4 | 12 | 627 | 33 | 652 | 0.0 | 541 |
| Msa0999010 | AT1G22150.3 | 44.640 | 625 | 332 | 4 | 12 | 627 | 33 | 652 | 0.0 | 541 |
| Msa0999010 | AT1G22150.4 | 44.640 | 625 | 332 | 4 | 12 | 627 | 33 | 652 | 0.0 | 541 |
| Msa0999010 | AT1G78000.2 | 45.923 | 601 | 319 | 3 | 28 | 623 | 46 | 645 | 0.0 | 533 |
| Msa0999010 | AT1G78000.1 | 45.923 | 601 | 319 | 3 | 28 | 623 | 46 | 645 | 0.0 | 533 |
| Msa0999010 | AT1G78000.3 | 45.923 | 601 | 319 | 3 | 28 | 623 | 46 | 645 | 0.0 | 533 |
| Msa0999010 | AT1G78000.5 | 46.181 | 563 | 297 | 3 | 28 | 585 | 46 | 607 | 3.11e-172 | 504 |
| Msa0999010 | AT1G22150.2 | 46.765 | 541 | 282 | 3 | 12 | 551 | 33 | 568 | 5.63e-172 | 503 |
| Msa0999010 | AT5G10180.1 | 42.978 | 591 | 326 | 5 | 42 | 623 | 84 | 672 | 1.26e-168 | 497 |
| Msa0999010 | AT1G78000.4 | 47.969 | 517 | 267 | 2 | 28 | 543 | 46 | 561 | 1.39e-166 | 489 |
| Msa0999010 | AT1G77990.1 | 40.981 | 571 | 326 | 4 | 60 | 620 | 94 | 663 | 3.28e-158 | 471 |
| Msa0999010 | AT1G23090.2 | 45.833 | 480 | 255 | 2 | 146 | 620 | 7 | 486 | 1.64e-148 | 439 |
| Msa0999010 | AT1G23090.3 | 45.833 | 480 | 255 | 2 | 146 | 620 | 7 | 486 | 1.64e-148 | 439 |
| Msa0999010 | AT1G23090.4 | 45.833 | 480 | 255 | 2 | 146 | 620 | 7 | 486 | 1.64e-148 | 439 |
| Msa0999010 | AT1G78000.6 | 48.132 | 455 | 234 | 2 | 28 | 481 | 46 | 499 | 3.20e-141 | 421 |
| Msa0999010 | AT1G78000.7 | 45.647 | 425 | 230 | 1 | 120 | 543 | 2 | 426 | 4.39e-127 | 383 |
| Msa0999010 | AT5G13550.1 | 33.981 | 618 | 388 | 11 | 29 | 637 | 47 | 653 | 2.10e-115 | 360 |
| Msa0999010 | AT3G12520.2 | 35.385 | 585 | 362 | 10 | 60 | 638 | 52 | 626 | 2.53e-115 | 359 |
| Msa0999010 | AT3G12520.1 | 35.385 | 585 | 362 | 10 | 60 | 638 | 68 | 642 | 5.78e-115 | 359 |
| Msa0999010 | AT3G12520.3 | 35.060 | 502 | 317 | 7 | 34 | 534 | 42 | 535 | 9.21e-97 | 307 |
Find 124 sgRNAs with CRISPR-Local
Find 458 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACCATCACTGGCTTTA+TGG | 0.091737 | 6_4:+80562324 | Msa0999010:CDS |
| TCTTCCATAATTTGCCTAAA+AGG | 0.165537 | 6_4:-80560487 | None:intergenic |
| AACTGCTATTGAAGGATTAT+TGG | 0.199180 | 6_4:+80568410 | Msa0999010:CDS |
| CTTGGAAAGTTACCTGATTC+TGG | 0.227842 | 6_4:+80567678 | Msa0999010:CDS |
| GCCAATATCCATGCTTAAAA+AGG | 0.236226 | 6_4:-80567223 | None:intergenic |
| CCAACTACTACACATGTTAT+TGG | 0.237105 | 6_4:-80565379 | None:intergenic |
| GGAATCGTTCTATCTAAATT+TGG | 0.237542 | 6_4:+80568794 | Msa0999010:CDS |
| CATTTGTAGGCTTGGGATAT+TGG | 0.255298 | 6_4:+80562285 | Msa0999010:intron |
| TACAATGTTGGTTCTGTTAC+AGG | 0.256809 | 6_4:-80561532 | None:intergenic |
| AATAATCTCAAAGTATAATT+TGG | 0.268753 | 6_4:-80560574 | None:intergenic |
| GAGGAGAAGAGAAGTAATTT+TGG | 0.271705 | 6_4:-80569018 | None:intergenic |
| TTTGGCCTCATGAACTTGTT+TGG | 0.279571 | 6_4:+80565850 | Msa0999010:CDS |
| ATCATTGTATCTGCCATGTT+AGG | 0.283405 | 6_4:+80567114 | Msa0999010:CDS |
| TTTGTGACAAAACTGAAATC+TGG | 0.284226 | 6_4:+80560436 | Msa0999010:CDS |
| TCTACCATCACTGGCTTTAT+GGG | 0.290527 | 6_4:+80562325 | Msa0999010:CDS |
| ATTGGAAACAAAGAAAATAT+TGG | 0.294585 | 6_4:+80568428 | Msa0999010:CDS |
| AGGAGGAAGATTGGCAAGTT+TGG | 0.298917 | 6_4:-80560662 | None:intergenic |
| CACAGCTATAACGTTGGTTT+TGG | 0.299109 | 6_4:-80562413 | None:intergenic |
| AAACCCTAGGTTGGAGGTTA+TGG | 0.301154 | 6_4:+80568731 | Msa0999010:CDS |
| AAATCTCGTAGGTTGATTAA+AGG | 0.311993 | 6_4:+80560517 | Msa0999010:CDS |
| ATTGGAAATGAAAGCAATTC+AGG | 0.312773 | 6_4:+80568446 | Msa0999010:CDS |
| GTGCAAGAGATTCATCATAA+TGG | 0.322663 | 6_4:+80560388 | Msa0999010:CDS |
| TGCAAGAGATTCATCATAAT+GGG | 0.323918 | 6_4:+80560389 | Msa0999010:CDS |
| AATCTCGTAGGTTGATTAAA+GGG | 0.331148 | 6_4:+80560518 | Msa0999010:CDS |
| GCCAATCTTCCTCCTCTCAT+TGG | 0.336096 | 6_4:+80560670 | Msa0999010:CDS |
| AAGGTTGGAATGTGCAAATA+AGG | 0.346900 | 6_4:-80560271 | None:intergenic |
| AGATGGGAAACTACAGTTCT+TGG | 0.350067 | 6_4:+80564661 | Msa0999010:CDS |
| TATCTGCATGAGTGCATTCT+TGG | 0.353100 | 6_4:+80567194 | Msa0999010:CDS |
| GTCTTCATTATTGTTTGGCT+TGG | 0.354659 | 6_4:-80568856 | None:intergenic |
| GTAGAATTTGAAAAGTAAAT+AGG | 0.362141 | 6_4:-80567774 | None:intergenic |
| TTTGGTAACCACTCAAAGAT+TGG | 0.364192 | 6_4:-80560556 | None:intergenic |
| AAAAGTGAACAAATCAGTTC+TGG | 0.368002 | 6_4:+80567935 | Msa0999010:CDS |
| AACAAAGAGATGATAGCTTT+TGG | 0.372125 | 6_4:+80565832 | Msa0999010:CDS |
| TCTAATGCTTCAACAATTCC+AGG | 0.372816 | 6_4:+80567726 | Msa0999010:CDS |
| ATTTGCCTAAAAGGATCATC+AGG | 0.384081 | 6_4:-80560478 | None:intergenic |
| GTTGGACTAGGTTTACTTAG+AGG | 0.389651 | 6_4:+80567621 | Msa0999010:CDS |
| TAATTAATTACCTTTCTTTG+AGG | 0.391511 | 6_4:-80567800 | None:intergenic |
| ACAGTGTCTTCATTATTGTT+TGG | 0.392452 | 6_4:-80568861 | None:intergenic |
| TTCACAGCCGTCTTGGAAAA+TGG | 0.392750 | 6_4:-80566973 | None:intergenic |
| TGTGGTTCAAGCAGTAATAA+TGG | 0.397620 | 6_4:+80567029 | Msa0999010:CDS |
| GTCAGATATTGAATTGATAT+AGG | 0.399696 | 6_4:-80565594 | None:intergenic |
| AAGTGTGTACAACCTAGTTT+TGG | 0.414861 | 6_4:-80568928 | None:intergenic |
| ATTGACACAACTGCTATTGA+AGG | 0.423273 | 6_4:+80568402 | Msa0999010:CDS |
| GATACTAACCTCATGTCTAT+TGG | 0.426004 | 6_4:-80562452 | None:intergenic |
| AGGTGTTGTATTATTAAGGT+TGG | 0.440488 | 6_4:-80560286 | None:intergenic |
| TCATTGTATCTGCCATGTTA+GGG | 0.442300 | 6_4:+80567115 | Msa0999010:CDS |
| CTCCTCATACTTGAAGCATA+TGG | 0.442928 | 6_4:+80569035 | Msa0999010:three_prime_UTR |
| TGCCATATGCTTCAAGTATG+AGG | 0.451478 | 6_4:-80569037 | None:intergenic |
| GCCAATGAGAGGAGGAAGAT+TGG | 0.452640 | 6_4:-80560671 | None:intergenic |
| TCTCTGTATAAACCAGAATC+AGG | 0.455645 | 6_4:-80567690 | None:intergenic |
| TCTCATCCTCCAACAATTCA+AGG | 0.458094 | 6_4:+80562363 | Msa0999010:CDS |
| TAAAGCCAGTGATGGTAGAA+TGG | 0.458267 | 6_4:-80562321 | None:intergenic |
| TTGTGACAAAACTGAAATCT+GGG | 0.460516 | 6_4:+80560437 | Msa0999010:CDS |
| ATCTGCATGAGTGCATTCTT+GGG | 0.460576 | 6_4:+80567195 | Msa0999010:CDS |
| ACAAATCAGTTCTGGAGATA+TGG | 0.462184 | 6_4:+80567943 | Msa0999010:CDS |
| CTTGCAATTTACAAGGCACT+TGG | 0.472344 | 6_4:+80564702 | Msa0999010:CDS |
| ACTTGTATAATTAGAACTCC+TGG | 0.472930 | 6_4:-80567744 | None:intergenic |
| AGTGGTGTGTTGCTAAATAA+TGG | 0.482061 | 6_4:-80567075 | None:intergenic |
| TTCACGACAACCTTTATCAC+TGG | 0.484749 | 6_4:+80561568 | Msa0999010:CDS |
| AAACTAGGTTGTACACACTT+TGG | 0.491155 | 6_4:+80568931 | Msa0999010:three_prime_UTR |
| GGAGTTCTAATTATACAAGT+TGG | 0.491780 | 6_4:+80567747 | Msa0999010:CDS |
| TTTGCAATCTAGGTTGGACT+AGG | 0.497605 | 6_4:+80567609 | Msa0999010:intron |
| AAAGCCAGTGATGGTAGAAT+GGG | 0.500955 | 6_4:-80562320 | None:intergenic |
| AGACCACCAGCATGCAAGCT+TGG | 0.506725 | 6_4:+80567660 | Msa0999010:CDS |
| GTTCTAGGCACATGGCAGTT+GGG | 0.507091 | 6_4:+80561455 | Msa0999010:CDS |
| ACTTATCAACTTTAAAGAGA+TGG | 0.509202 | 6_4:-80567161 | None:intergenic |
| CTTAGTAAACCCTAGGTTGG+AGG | 0.511054 | 6_4:+80568725 | Msa0999010:CDS |
| ATTCTACATACCTCAAAGAA+AGG | 0.514031 | 6_4:+80567790 | Msa0999010:CDS |
| ATCTCTTTGTTCCCATCATG+AGG | 0.518610 | 6_4:-80565820 | None:intergenic |
| AGTTCTAGGCACATGGCAGT+TGG | 0.522267 | 6_4:+80561454 | Msa0999010:CDS |
| CATGAGTGCATTCTTGGGTG+TGG | 0.523931 | 6_4:+80567200 | Msa0999010:CDS |
| AACTTTCCAAGCTTGCATGC+TGG | 0.527389 | 6_4:-80567666 | None:intergenic |
| AAATTTGGAAGATGCAGTGT+TGG | 0.527724 | 6_4:+80568809 | Msa0999010:CDS |
| TTATCAACAGTAATGAAAGC+TGG | 0.530131 | 6_4:+80565633 | Msa0999010:CDS |
| TTTCCAAGCTTGCATGCTGG+TGG | 0.538810 | 6_4:-80567663 | None:intergenic |
| CTCCAACCTAGGGTTTACTA+AGG | 0.544948 | 6_4:-80568724 | None:intergenic |
| ACTGCTAATACACCTCATGA+TGG | 0.545862 | 6_4:+80565808 | Msa0999010:CDS |
| CTTGTGAAAGGTACACAACA+TGG | 0.546175 | 6_4:+80565418 | Msa0999010:CDS |
| TTCTCCATAACCTCCAACCT+AGG | 0.548321 | 6_4:-80568735 | None:intergenic |
| GGCCTTAGTAAACCCTAGGT+TGG | 0.549563 | 6_4:+80568722 | Msa0999010:CDS |
| ATAACTAATGCCTTGAGGAA+TGG | 0.551773 | 6_4:-80560638 | None:intergenic |
| ATAACATGTGTAGTAGTTGG+TGG | 0.555611 | 6_4:+80565382 | Msa0999010:CDS |
| CATGTTGTGTACCTTTCACA+AGG | 0.555977 | 6_4:-80565417 | None:intergenic |
| ATCAAGTGAAGATACAATGT+TGG | 0.557565 | 6_4:-80561544 | None:intergenic |
| TCTCCATAACCTCCAACCTA+GGG | 0.557732 | 6_4:-80568734 | None:intergenic |
| CCAATAACATGTGTAGTAGT+TGG | 0.558610 | 6_4:+80565379 | Msa0999010:CDS |
| CTCTAGCACAGCTATAACGT+TGG | 0.559151 | 6_4:-80562419 | None:intergenic |
| ACCATCACTGGCTTTATGGG+AGG | 0.561154 | 6_4:+80562328 | Msa0999010:CDS |
| GCTAGTCTTGCCATTCCTCA+AGG | 0.563153 | 6_4:+80560628 | Msa0999010:CDS |
| ATTGTAATTCACAGCCGTCT+TGG | 0.564494 | 6_4:-80566980 | None:intergenic |
| TGATAAATATCTTCTATCAA+AGG | 0.566348 | 6_4:-80565616 | None:intergenic |
| CTGCTAATACACCTCATGAT+GGG | 0.571207 | 6_4:+80565809 | Msa0999010:CDS |
| TTGTAAATTGCAAGAAAACA+AGG | 0.572872 | 6_4:-80564693 | None:intergenic |
| ACAATGTTGGTTCTGTTACA+GGG | 0.576689 | 6_4:-80561531 | None:intergenic |
| ACATCATGTTACTTGACTAG+TGG | 0.580545 | 6_4:+80565880 | Msa0999010:CDS |
| CAGTGGAGTATTGTCATTAG+CGG | 0.582868 | 6_4:+80565662 | Msa0999010:CDS |
| GCAGATACCCAAAAGAGTTG+TGG | 0.585327 | 6_4:-80565349 | None:intergenic |
| AAATGCCCTTGAATTGTTGG+AGG | 0.588732 | 6_4:-80562369 | None:intergenic |
| CAACGTTATAGCTGTGCTAG+AGG | 0.589719 | 6_4:+80562420 | Msa0999010:CDS |
| AGGAATGGCAAGACTAGCAA+TGG | 0.591507 | 6_4:-80560623 | None:intergenic |
| AGATGGCCTTAGTAAACCCT+AGG | 0.598373 | 6_4:+80568718 | Msa0999010:intron |
| ATGTAGGAAGGAATAGCCAT+AGG | 0.601997 | 6_4:+80565769 | Msa0999010:intron |
| ATCTCGTAGGTTGATTAAAG+GGG | 0.603398 | 6_4:+80560519 | Msa0999010:CDS |
| CCCTCCCATAAAGCCAGTGA+TGG | 0.605304 | 6_4:-80562329 | None:intergenic |
| CCATCACTGGCTTTATGGGA+GGG | 0.606512 | 6_4:+80562329 | Msa0999010:CDS |
| ACGGCTGTGAATTACAATGC+AGG | 0.613947 | 6_4:+80566985 | Msa0999010:CDS |
| AACGTTATAGCTGTGCTAGA+GGG | 0.614539 | 6_4:+80562421 | Msa0999010:CDS |
| AAGATCCAAACAAGTTCATG+AGG | 0.614928 | 6_4:-80565855 | None:intergenic |
| CTCATCCTCCAACAATTCAA+GGG | 0.615128 | 6_4:+80562364 | Msa0999010:CDS |
| TACATTAATAAACCAAAACT+AGG | 0.621123 | 6_4:+80568916 | Msa0999010:three_prime_UTR |
| ATGAAAGCTGGACTAATCAG+TGG | 0.624504 | 6_4:+80565645 | Msa0999010:CDS |
| GACTTACAAAGGCCAATGAG+AGG | 0.626933 | 6_4:-80560682 | None:intergenic |
| ATAATTTATCAACCCTAACA+TGG | 0.629736 | 6_4:-80567127 | None:intergenic |
| CATCTTTACCAATAGACATG+AGG | 0.630254 | 6_4:+80562444 | Msa0999010:CDS |
| GAGTACTCACAGAGAGCATG+AGG | 0.634898 | 6_4:-80567245 | None:intergenic |
| AAAACAGCATACACTAGTGG+TGG | 0.646156 | 6_4:-80561427 | None:intergenic |
| TTGGCATAACTAATGCCTTG+AGG | 0.647323 | 6_4:-80560643 | None:intergenic |
| GTGAACTTATCAACCCAAAG+AGG | 0.656250 | 6_4:+80560412 | Msa0999010:CDS |
| TTTGCCTAAAAGGATCATCA+GGG | 0.658092 | 6_4:-80560477 | None:intergenic |
| TTACAAAGGCCAATGAGAGG+AGG | 0.669733 | 6_4:-80560679 | None:intergenic |
| ATAGCTGATAGAGCAACAAG+TGG | 0.676923 | 6_4:-80567093 | None:intergenic |
| TAGGTGGGACATCTAGACAA+AGG | 0.681215 | 6_4:+80565564 | Msa0999010:intron |
| GCAAGAGATTCATCATAATG+GGG | 0.683072 | 6_4:+80560390 | Msa0999010:CDS |
| TAAATCTGCAATGACAAATG+TGG | 0.698801 | 6_4:+80567011 | Msa0999010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAGAAAAATAACAT+AGG | - | chr6_4:80561315-80561334 | None:intergenic | 10.0% |
| !!! | TTTATCTTAATTTTTGAAAT+TGG | + | chr6_4:80561334-80561353 | Msa0999010:intron | 10.0% |
| !! | ATTAAATAATATCAGATTTA+AGG | + | chr6_4:80562031-80562050 | Msa0999010:intron | 10.0% |
| !!! | AAATCACTTTTTTTTTTATA+AGG | + | chr6_4:80562604-80562623 | Msa0999010:intron | 10.0% |
| !!! | AATCACTTTTTTTTTTATAA+GGG | + | chr6_4:80562605-80562624 | Msa0999010:intron | 10.0% |
| !!! | TACTGATTTTTAAATAATAA+TGG | + | chr6_4:80562628-80562647 | Msa0999010:intron | 10.0% |
| !! | AAATAAATAAGAAAAATGTT+TGG | - | chr6_4:80562904-80562923 | None:intergenic | 10.0% |
| !!! | ACATTTTTCTTATTTATTTA+AGG | + | chr6_4:80562905-80562924 | Msa0999010:intron | 10.0% |
| !!! | TGTGATAATTTTTTTTTTTA+AGG | + | chr6_4:80563476-80563495 | Msa0999010:intron | 10.0% |
| !! | AATATTTGATTCAAAAAAAA+AGG | + | chr6_4:80564176-80564195 | Msa0999010:intron | 10.0% |
| !! | TTGATAAAAAATGTTAATTA+TGG | - | chr6_4:80565725-80565744 | None:intergenic | 10.0% |
| !!! | TAGTTTTAAAAGTAATATTT+TGG | + | chr6_4:80566575-80566594 | Msa0999010:intron | 10.0% |
| !! | AATTAATATGTATATATCAA+TGG | - | chr6_4:80567865-80567884 | None:intergenic | 10.0% |
| !! | AATAATCTCAAAGTATAATT+TGG | - | chr6_4:80560577-80560596 | None:intergenic | 15.0% |
| !! | ATTATAAAAATGACTTACAA+AGG | - | chr6_4:80560696-80560715 | None:intergenic | 15.0% |
| !!! | AAATCAGATTTTTTTTTTGA+AGG | + | chr6_4:80562551-80562570 | Msa0999010:intron | 15.0% |
| !! | TATTTCAATAAAAATGTTAG+TGG | + | chr6_4:80563254-80563273 | Msa0999010:intron | 15.0% |
| !!! | TTTTTAAAAATTGTTTTGCA+AGG | - | chr6_4:80563328-80563347 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTCTTTTGTTTTT+AGG | + | chr6_4:80563510-80563529 | Msa0999010:intron | 15.0% |
| !!! | TTTTGTTTCTTTTGTTTTTA+GGG | + | chr6_4:80563511-80563530 | Msa0999010:intron | 15.0% |
| !! | AAATAAATCAAATTATTACG+TGG | - | chr6_4:80563570-80563589 | None:intergenic | 15.0% |
| !! | TAATAAAAAAAACGAAAAGA+CGG | - | chr6_4:80563655-80563674 | None:intergenic | 15.0% |
| !! | ACTATATTTATAAGCAATAA+AGG | - | chr6_4:80563823-80563842 | None:intergenic | 15.0% |
| !! | ATATTTGCTTCATAAAAAAA+AGG | + | chr6_4:80564067-80564086 | Msa0999010:intron | 15.0% |
| !!! | ATTTGTTAGGTTAAAAAATA+TGG | + | chr6_4:80564213-80564232 | Msa0999010:intron | 15.0% |
| !!! | TTTTGAATATAATTTTTCAG+AGG | + | chr6_4:80565317-80565336 | Msa0999010:intron | 15.0% |
| !!! | TTTGAATATAATTTTTCAGA+GGG | + | chr6_4:80565318-80565337 | Msa0999010:intron | 15.0% |
| !! | GACTATTAGTATATAAAAAA+GGG | - | chr6_4:80566086-80566105 | None:intergenic | 15.0% |
| !! | TGACTATTAGTATATAAAAA+AGG | - | chr6_4:80566087-80566106 | None:intergenic | 15.0% |
| !!! | AAATGTATGATTTTCTTTTA+GGG | + | chr6_4:80566350-80566369 | Msa0999010:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr6_4:80566552-80566571 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr6_4:80566551-80566570 | Msa0999010:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr6_4:80566678-80566697 | Msa0999010:intron | 15.0% |
| !!! | TTTTTTATTACTAAATGTAG+TGG | - | chr6_4:80568515-80568534 | None:intergenic | 15.0% |
| !! | ATATTAAAGATGAATTACAA+AGG | - | chr6_4:80568490-80568509 | None:intergenic | 15.0% |
| !!! | AAGTTAAAATTTTCATTTAG+TGG | - | chr6_4:80568666-80568685 | None:intergenic | 15.0% |
| !!! | AAAAAGGTGTTGTATTATTA+AGG | - | chr6_4:80560293-80560312 | None:intergenic | 20.0% |
| !!! | AAAAAGGTGTTGTATTAAAA+AGG | - | chr6_4:80560309-80560328 | None:intergenic | 20.0% |
| !! | ACATTCATTCTTAATTACTT+CGG | + | chr6_4:80560722-80560741 | Msa0999010:intron | 20.0% |
| !!! | TTCGATTATGTAATTTGTTT+TGG | + | chr6_4:80560875-80560894 | Msa0999010:intron | 20.0% |
| !!! | TCTCAATTGTTATTATATCA+CGG | + | chr6_4:80560944-80560963 | Msa0999010:intron | 20.0% |
| !! | ATAAAGTTTAACAATGAGAT+CGG | - | chr6_4:80561085-80561104 | None:intergenic | 20.0% |
| !! | TAGAGTCAAATAGATATTTA+AGG | + | chr6_4:80561162-80561181 | Msa0999010:intron | 20.0% |
| !! | AGAGTCAAATAGATATTTAA+GGG | + | chr6_4:80561163-80561182 | Msa0999010:intron | 20.0% |
| !! | CAAATAAGAACAATAACTAT+AGG | + | chr6_4:80561259-80561278 | Msa0999010:intron | 20.0% |
| !! | AATAACATAGGATTTGAATA+CGG | - | chr6_4:80561303-80561322 | None:intergenic | 20.0% |
| !!! | AGTGATTTTGATTTGATTTT+TGG | + | chr6_4:80561372-80561391 | Msa0999010:intron | 20.0% |
| !! | AAGTAATTATCTATGAAACA+CGG | - | chr6_4:80561860-80561879 | None:intergenic | 20.0% |
| !! | AAAAAAAATCTGATTTAGCA+TGG | - | chr6_4:80562547-80562566 | None:intergenic | 20.0% |
| !! | AAAAAAAAAGTGATTTAGCA+TGG | - | chr6_4:80562600-80562619 | None:intergenic | 20.0% |
| !!! | TAGTTTTTGTAAAATCATTG+TGG | - | chr6_4:80562763-80562782 | None:intergenic | 20.0% |
| !! | AAATGGATATGTAATCTTAA+AGG | - | chr6_4:80563223-80563242 | None:intergenic | 20.0% |
| !! | GAAATATAGTTGATCTAAAA+TGG | - | chr6_4:80563240-80563259 | None:intergenic | 20.0% |
| !!! | ATGTGATAGTTTTATTTTCA+TGG | + | chr6_4:80563538-80563557 | Msa0999010:intron | 20.0% |
| !!! | TGTGATAGTTTTATTTTCAT+GGG | + | chr6_4:80563539-80563558 | Msa0999010:intron | 20.0% |
| !! | GTAACAAACAAAATTGTTTA+AGG | + | chr6_4:80563765-80563784 | Msa0999010:intron | 20.0% |
| !!! | TATAAGCAATAAAGGATTTT+AGG | - | chr6_4:80563815-80563834 | None:intergenic | 20.0% |
| !!! | CAAATATTTTCTACACTTTT+AGG | - | chr6_4:80564164-80564183 | None:intergenic | 20.0% |
| !! | ATTTGATTCAAAAAAAAAGG+AGG | + | chr6_4:80564179-80564198 | Msa0999010:intron | 20.0% |
| !! | TAGGTTAAAAAATATGGATT+CGG | + | chr6_4:80564219-80564238 | Msa0999010:intron | 20.0% |
| !!! | TATCAAGTTTGCTATAATTT+TGG | - | chr6_4:80564249-80564268 | None:intergenic | 20.0% |
| !!! | CTCACAAATATCTATTTTAA+GGG | - | chr6_4:80564550-80564569 | None:intergenic | 20.0% |
| !!! | TCTCACAAATATCTATTTTA+AGG | - | chr6_4:80564551-80564570 | None:intergenic | 20.0% |
| !!! | TAACTATATACTTTTATGTG+TGG | + | chr6_4:80564595-80564614 | Msa0999010:intron | 20.0% |
| !!! | CATATTTTATTCATAGTTTG+TGG | - | chr6_4:80564890-80564909 | None:intergenic | 20.0% |
| !! | CACAAACTATGAATAAAATA+TGG | + | chr6_4:80564888-80564907 | Msa0999010:intron | 20.0% |
| !! | TACATGTAAAATATTGCTAT+TGG | - | chr6_4:80564916-80564935 | None:intergenic | 20.0% |
| !! | TCCTATTAGATTAAGATATT+CGG | + | chr6_4:80564958-80564977 | Msa0999010:intron | 20.0% |
| !! | ATAAGATACTAAGAAATTGA+AGG | - | chr6_4:80565484-80565503 | None:intergenic | 20.0% |
| !! | TTTGATGTTTATACATATGT+AGG | + | chr6_4:80565545-80565564 | Msa0999010:intron | 20.0% |
| !! | TGATAAATATCTTCTATCAA+AGG | - | chr6_4:80565619-80565638 | None:intergenic | 20.0% |
| !! | TATATACTAAGTATAAGACT+TGG | + | chr6_4:80565926-80565945 | Msa0999010:intron | 20.0% |
| !! | TATTAGTATATAAAAAAGGG+TGG | - | chr6_4:80566083-80566102 | None:intergenic | 20.0% |
| !!! | CTAAATATTTTGTATTTGAG+GGG | - | chr6_4:80566186-80566205 | None:intergenic | 20.0% |
| !!! | GCTAAATATTTTGTATTTGA+GGG | - | chr6_4:80566187-80566206 | None:intergenic | 20.0% |
| !!! | TGCTAAATATTTTGTATTTG+AGG | - | chr6_4:80566188-80566207 | None:intergenic | 20.0% |
| !! | TTTAGCAATGATATTAGAAA+AGG | + | chr6_4:80566201-80566220 | Msa0999010:intron | 20.0% |
| !! | TTAGCAATGATATTAGAAAA+GGG | + | chr6_4:80566202-80566221 | Msa0999010:intron | 20.0% |
| !!! | CAAATGTATGATTTTCTTTT+AGG | + | chr6_4:80566349-80566368 | Msa0999010:intron | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | + | chr6_4:80566518-80566537 | Msa0999010:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr6_4:80566561-80566580 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr6_4:80566638-80566657 | Msa0999010:intron | 20.0% |
| !!! | AATGAACATTTTTATGTCAA+AGG | - | chr6_4:80566910-80566929 | None:intergenic | 20.0% |
| !! | TATTGTATACTGATATACTT+AGG | + | chr6_4:80566929-80566948 | Msa0999010:intron | 20.0% |
| !!! | CGTTAATTTAACTCTTTTTA+GGG | - | chr6_4:80567308-80567327 | None:intergenic | 20.0% |
| !!! | TCGTTAATTTAACTCTTTTT+AGG | - | chr6_4:80567309-80567328 | None:intergenic | 20.0% |
| !! | TTTATATGTATTTGCAATCT+AGG | + | chr6_4:80567599-80567618 | Msa0999010:intron | 20.0% |
| !! | GTAGAATTTGAAAAGTAAAT+AGG | - | chr6_4:80567777-80567796 | None:intergenic | 20.0% |
| !! | TAATTAATTACCTTTCTTTG+AGG | - | chr6_4:80567803-80567822 | None:intergenic | 20.0% |
| !!! | TTTTCTTAAAATTGTGCAAT+AGG | + | chr6_4:80567897-80567916 | Msa0999010:intron | 20.0% |
| !! | ATAAGCATACAAAAGAAAAA+GGG | - | chr6_4:80568367-80568386 | None:intergenic | 20.0% |
| !! | TATAAGCATACAAAAGAAAA+AGG | - | chr6_4:80568368-80568387 | None:intergenic | 20.0% |
| !! | ATTGGAAACAAAGAAAATAT+TGG | + | chr6_4:80568428-80568447 | Msa0999010:CDS | 20.0% |
| !!! | GTTTTTATTACTAAATGTAG+TGG | - | chr6_4:80568572-80568591 | None:intergenic | 20.0% |
| !!! | TCAAAGTTTGTTGAAAAAAT+TGG | + | chr6_4:80568768-80568787 | Msa0999010:CDS | 20.0% |
| !!! | CAAAGTTTGTTGAAAAAATT+GGG | + | chr6_4:80568769-80568788 | Msa0999010:CDS | 20.0% |
| !! | TACATTAATAAACCAAAACT+AGG | + | chr6_4:80568916-80568935 | Msa0999010:three_prime_UTR | 20.0% |
| ! | ACATACACAAAAACACAAAA+AGG | - | chr6_4:80560325-80560344 | None:intergenic | 25.0% |
| !! | TCTACACAAAATTTTCTTGA+TGG | + | chr6_4:80560360-80560379 | Msa0999010:exon | 25.0% |
| !! | ATTTTATTCCAATCTTTGAG+TGG | + | chr6_4:80560548-80560567 | Msa0999010:CDS | 25.0% |
| ! | ACATGAGAATCAAAATACTA+CGG | - | chr6_4:80560813-80560832 | None:intergenic | 25.0% |
| ! | GAGTCAAATAGATATTTAAG+GGG | + | chr6_4:80561164-80561183 | Msa0999010:intron | 25.0% |
| !! | GTTATTGTTGTTATTCTTCT+TGG | - | chr6_4:80561230-80561249 | None:intergenic | 25.0% |
| ! | AAAATCACATGTCATCATAT+TGG | - | chr6_4:80561671-80561690 | None:intergenic | 25.0% |
| ! | CTTATAAAACGTTAACACAT+TGG | + | chr6_4:80561877-80561896 | Msa0999010:intron | 25.0% |
| !! | TACATTTTTGTGTGTTTCTT+TGG | + | chr6_4:80561993-80562012 | Msa0999010:intron | 25.0% |
| ! | ACTAATACAAATTACGATGA+AGG | + | chr6_4:80562071-80562090 | Msa0999010:intron | 25.0% |
| ! | TGACTGATCAAAATAATAAG+AGG | + | chr6_4:80562514-80562533 | Msa0999010:intron | 25.0% |
| ! | TTAGTGCATGTTAGATATTA+CGG | - | chr6_4:80562854-80562873 | None:intergenic | 25.0% |
| ! | ACAATAAAAATGAGTGTTAG+TGG | + | chr6_4:80563182-80563201 | Msa0999010:intron | 25.0% |
| ! | GTTAGTGGCTTAAAAAAAAA+AGG | + | chr6_4:80563197-80563216 | Msa0999010:intron | 25.0% |
| ! | CAACAACTTGTCAAAAAATT+CGG | + | chr6_4:80563894-80563913 | Msa0999010:intron | 25.0% |
| ! | GATCAATTGCTAAAATTGAA+TGG | + | chr6_4:80563934-80563953 | Msa0999010:intron | 25.0% |
| ! | AAAAATGTGGGAAAGATATT+AGG | + | chr6_4:80563999-80564018 | Msa0999010:intron | 25.0% |
| ! | AAAATGTGGGAAAGATATTA+GGG | + | chr6_4:80564000-80564019 | Msa0999010:intron | 25.0% |
| !! | GGATATGAATGAAATTTGTT+AGG | + | chr6_4:80564200-80564219 | Msa0999010:intron | 25.0% |
| !! | GCAAACTTGATAACAAAATT+CGG | + | chr6_4:80564257-80564276 | Msa0999010:intron | 25.0% |
| !! | TTTTATGTGTGGAAATAACA+CGG | + | chr6_4:80564606-80564625 | Msa0999010:intron | 25.0% |
| !!! | TGCTATTTTAACAGATAAGA+TGG | + | chr6_4:80564644-80564663 | Msa0999010:intron | 25.0% |
| !!! | GCTATTTTAACAGATAAGAT+GGG | + | chr6_4:80564645-80564664 | Msa0999010:intron | 25.0% |
| ! | TTGTAAATTGCAAGAAAACA+AGG | - | chr6_4:80564696-80564715 | None:intergenic | 25.0% |
| !! | TTGTTTTCTTGCAATTTACA+AGG | + | chr6_4:80564695-80564714 | Msa0999010:CDS | 25.0% |
| ! | GATTAGAAGAACATAGAAAA+AGG | + | chr6_4:80564799-80564818 | Msa0999010:intron | 25.0% |
| ! | ACCGAATATCTTAATCTAAT+AGG | - | chr6_4:80564962-80564981 | None:intergenic | 25.0% |
| ! | ATATGCTTTCTTGTAGATAA+GGG | - | chr6_4:80565240-80565259 | None:intergenic | 25.0% |
| !! | TTAAAAAACCACAACTCTTT+TGG | + | chr6_4:80565341-80565360 | Msa0999010:CDS | 25.0% |
| !! | TAAAAAACCACAACTCTTTT+GGG | + | chr6_4:80565342-80565361 | Msa0999010:CDS | 25.0% |
| ! | ATGTTTATACATATGTAGGT+GGG | + | chr6_4:80565549-80565568 | Msa0999010:intron | 25.0% |
| ! | GTCAGATATTGAATTGATAT+AGG | - | chr6_4:80565597-80565616 | None:intergenic | 25.0% |
| ! | CATGAGATGAAATTCATATA+GGG | - | chr6_4:80566042-80566061 | None:intergenic | 25.0% |
| ! | CTATATGAATTTCATCTCAT+GGG | + | chr6_4:80566041-80566060 | Msa0999010:intron | 25.0% |
| !!! | ATCGTTTTTTCACATCATTT+TGG | + | chr6_4:80566295-80566314 | Msa0999010:intron | 25.0% |
| !!! | TATCTTTTTTCAGGTCATTT+TGG | - | chr6_4:80566437-80566456 | None:intergenic | 25.0% |
| !!! | CTGTCGTTTAACTTAATTTT+AGG | - | chr6_4:80566754-80566773 | None:intergenic | 25.0% |
| ! | AAATTAAGTTAAACGACAGA+CGG | + | chr6_4:80566755-80566774 | Msa0999010:intron | 25.0% |
| !! | ATATCTCAACTCTATTTTCT+AGG | - | chr6_4:80566795-80566814 | None:intergenic | 25.0% |
| !! | AATAGAGTTGAGATATTTTC+AGG | + | chr6_4:80566799-80566818 | Msa0999010:intron | 25.0% |
| !!! | AGGCTTAAATTGATTTTTGT+AGG | + | chr6_4:80566949-80566968 | Msa0999010:intron | 25.0% |
| ! | ATAATTTATCAACCCTAACA+TGG | - | chr6_4:80567130-80567149 | None:intergenic | 25.0% |
| !! | ACTTATCAACTTTAAAGAGA+TGG | - | chr6_4:80567164-80567183 | None:intergenic | 25.0% |
| ! | TTTATTCTCTCACTTCTATT+AGG | + | chr6_4:80567270-80567289 | Msa0999010:intron | 25.0% |
| !!! | TTTAACTCTTTTTAGGGTTA+GGG | - | chr6_4:80567302-80567321 | None:intergenic | 25.0% |
| !!! | ATTTAACTCTTTTTAGGGTT+AGG | - | chr6_4:80567303-80567322 | None:intergenic | 25.0% |
| ! | TCTAATTTCTATCATGAAGA+TGG | + | chr6_4:80567420-80567439 | Msa0999010:intron | 25.0% |
| !!! | ATCATGAAATCAACGTTTTT+TGG | + | chr6_4:80567523-80567542 | Msa0999010:intron | 25.0% |
| !!! | ATCAATGGATTATCATTAGA+TGG | - | chr6_4:80567850-80567869 | None:intergenic | 25.0% |
| ! | ACACACATAATAAAACAACA+AGG | - | chr6_4:80568024-80568043 | None:intergenic | 25.0% |
| !! | TTGTATAACGCTACATTTTA+TGG | + | chr6_4:80568978-80568997 | Msa0999010:three_prime_UTR | 25.0% |
| ! | AGGTGTTGTATTATTAAGGT+TGG | - | chr6_4:80560289-80560308 | None:intergenic | 30.0% |
| TGCAAGAGATTCATCATAAT+GGG | + | chr6_4:80560389-80560408 | Msa0999010:CDS | 30.0% | |
| ! | TTTTGTCACAAAACCTCTTT+GGG | - | chr6_4:80560428-80560447 | None:intergenic | 30.0% |
| TTTGTGACAAAACTGAAATC+TGG | + | chr6_4:80560436-80560455 | Msa0999010:CDS | 30.0% | |
| TTGTGACAAAACTGAAATCT+GGG | + | chr6_4:80560437-80560456 | Msa0999010:CDS | 30.0% | |
| ! | TGATCCTTTTAGGCAAATTA+TGG | + | chr6_4:80560483-80560502 | Msa0999010:CDS | 30.0% |
| ! | TCTTCCATAATTTGCCTAAA+AGG | - | chr6_4:80560490-80560509 | None:intergenic | 30.0% |
| ! | TTTTAGGCAAATTATGGAAG+AGG | + | chr6_4:80560489-80560508 | Msa0999010:CDS | 30.0% |
| AAGAGGAAAAAAAATCTCGT+AGG | + | chr6_4:80560506-80560525 | Msa0999010:CDS | 30.0% | |
| !! | AAATCTCGTAGGTTGATTAA+AGG | + | chr6_4:80560517-80560536 | Msa0999010:CDS | 30.0% |
| !! | AATCTCGTAGGTTGATTAAA+GGG | + | chr6_4:80560518-80560537 | Msa0999010:CDS | 30.0% |
| ! | TTTTTCTCTGACTTAATTGC+TGG | + | chr6_4:80560595-80560614 | Msa0999010:CDS | 30.0% |
| CATGAGAATCAAAATACTAC+GGG | - | chr6_4:80560812-80560831 | None:intergenic | 30.0% | |
| CAATTGAGAGTAGTATATCT+CGG | - | chr6_4:80560933-80560952 | None:intergenic | 30.0% | |
| TTATTATATCACGGTAAGAG+AGG | + | chr6_4:80560953-80560972 | Msa0999010:intron | 30.0% | |
| TATTATATCACGGTAAGAGA+GGG | + | chr6_4:80560954-80560973 | Msa0999010:intron | 30.0% | |
| TAAAGAGGAAATTGGATTTC+CGG | + | chr6_4:80561035-80561054 | Msa0999010:intron | 30.0% | |
| AATTACAATCTCAATCTTGC+TGG | + | chr6_4:80561105-80561124 | Msa0999010:intron | 30.0% | |
| ATCAAGTGAAGATACAATGT+TGG | - | chr6_4:80561547-80561566 | None:intergenic | 30.0% | |
| !! | GATGACATGTGATTTTGTTT+TGG | + | chr6_4:80561675-80561694 | Msa0999010:intron | 30.0% |
| !!! | GATTTTGTTTTGGCTTTGTT+TGG | + | chr6_4:80561685-80561704 | Msa0999010:intron | 30.0% |
| !! | AAGTTTTGTCATGATCACAA+TGG | + | chr6_4:80561955-80561974 | Msa0999010:intron | 30.0% |
| !!! | TTCATTCTACTTTTTGTGTG+TGG | + | chr6_4:80562234-80562253 | Msa0999010:intron | 30.0% |
| ! | TTTTGTGAAAGGACATTTGT+AGG | + | chr6_4:80562272-80562291 | Msa0999010:intron | 30.0% |
| TGTTAGATATTACGGTAGAT+TGG | - | chr6_4:80562846-80562865 | None:intergenic | 30.0% | |
| TGCATCAACAAAAATGAACA+TGG | + | chr6_4:80563107-80563126 | Msa0999010:intron | 30.0% | |
| TAAAAATGTTAGTGGTCTAG+TGG | + | chr6_4:80563262-80563281 | Msa0999010:intron | 30.0% | |
| ! | TAGGGTTAATTAAGGTTGAT+TGG | + | chr6_4:80563381-80563400 | Msa0999010:intron | 30.0% |
| !!! | TGTTTCTTTTGTTTTTAGGG+AGG | + | chr6_4:80563514-80563533 | Msa0999010:intron | 30.0% |
| ATTTACATTATGTCAACGTG+TGG | + | chr6_4:80563609-80563628 | Msa0999010:intron | 30.0% | |
| CGTTCATAATCTATATGTGT+TGG | - | chr6_4:80563680-80563699 | None:intergenic | 30.0% | |
| CCATTGAATCTTGCATATTT+AGG | - | chr6_4:80563962-80563981 | None:intergenic | 30.0% | |
| CCTAAATATGCAAGATTCAA+TGG | + | chr6_4:80563959-80563978 | Msa0999010:intron | 30.0% | |
| ! | GGTTAAGCTTTAGTAAGTTA+GGG | + | chr6_4:80564038-80564057 | Msa0999010:intron | 30.0% |
| CTTCATAAAAAAAAGGCAAG+AGG | + | chr6_4:80564074-80564093 | Msa0999010:intron | 30.0% | |
| TAAAAAAAAGGCAAGAGGAT+AGG | + | chr6_4:80564079-80564098 | Msa0999010:intron | 30.0% | |
| CAAGAGGATAGGAATAAAAT+TGG | + | chr6_4:80564090-80564109 | Msa0999010:intron | 30.0% | |
| TTAAAAAATATGGATTCGGC+TGG | + | chr6_4:80564223-80564242 | Msa0999010:intron | 30.0% | |
| GCATTAAGTAAGATGATCAA+TGG | + | chr6_4:80564283-80564302 | Msa0999010:intron | 30.0% | |
| GATCAATGGCTAAAATTGAA+TGG | + | chr6_4:80564297-80564316 | Msa0999010:intron | 30.0% | |
| TAGAAAAGTTGAGGGTAAAA+TGG | + | chr6_4:80564347-80564366 | Msa0999010:intron | 30.0% | |
| AGAAAAGTTGAGGGTAAAAT+GGG | + | chr6_4:80564348-80564367 | Msa0999010:intron | 30.0% | |
| TAAAATGGGGGGAAAATATT+AGG | + | chr6_4:80564362-80564381 | Msa0999010:intron | 30.0% | |
| AAAATGGGGGGAAAATATTA+GGG | + | chr6_4:80564363-80564382 | Msa0999010:intron | 30.0% | |
| ! | TTTTGTCACACATCTAATCA+AGG | + | chr6_4:80564426-80564445 | Msa0999010:intron | 30.0% |
| CAAGAAGAAAGAGTGAAAAA+CGG | + | chr6_4:80564497-80564516 | Msa0999010:intron | 30.0% | |
| TTTATGTGTGGAAATAACAC+GGG | + | chr6_4:80564607-80564626 | Msa0999010:intron | 30.0% | |
| TAGAAGAACATAGAAAAAGG+TGG | + | chr6_4:80564802-80564821 | Msa0999010:intron | 30.0% | |
| CATATGCTTTCTTGTAGATA+AGG | - | chr6_4:80565241-80565260 | None:intergenic | 30.0% | |
| !!! | AAAGCATATGCTTTTTCTCA+CGG | + | chr6_4:80565251-80565270 | Msa0999010:intron | 30.0% |
| GATGTTTATACATATGTAGG+TGG | + | chr6_4:80565548-80565567 | Msa0999010:intron | 30.0% | |
| TTATCAACAGTAATGAAAGC+TGG | + | chr6_4:80565633-80565652 | Msa0999010:CDS | 30.0% | |
| TACAGAAAAACTTCTTCCTA+TGG | - | chr6_4:80565788-80565807 | None:intergenic | 30.0% | |
| ! | AACAAAGAGATGATAGCTTT+TGG | + | chr6_4:80565832-80565851 | Msa0999010:CDS | 30.0% |
| ! | AATTAGAACATGTGCCTTTT+AGG | - | chr6_4:80565985-80566004 | None:intergenic | 30.0% |
| ATAATCAATCTCTCAACTTG+TGG | + | chr6_4:80566007-80566026 | Msa0999010:intron | 30.0% | |
| CCATGAGATGAAATTCATAT+AGG | - | chr6_4:80566043-80566062 | None:intergenic | 30.0% | |
| CCTATATGAATTTCATCTCA+TGG | + | chr6_4:80566040-80566059 | Msa0999010:intron | 30.0% | |
| ! | GTCGTCTTTTACTTAATTCT+AGG | + | chr6_4:80566255-80566274 | Msa0999010:intron | 30.0% |
| CTTAATTCTAGGCAAACATT+TGG | + | chr6_4:80566266-80566285 | Msa0999010:intron | 30.0% | |
| ! | TGGTCTTTTACTCAAATCTA+TGG | - | chr6_4:80566417-80566436 | None:intergenic | 30.0% |
| !!! | AAAATGATGAGTGTCGTTTT+AGG | + | chr6_4:80566470-80566489 | Msa0999010:intron | 30.0% |
| TAAATCTGCAATGACAAATG+TGG | + | chr6_4:80567011-80567030 | Msa0999010:CDS | 30.0% | |
| !!! | TTAACTCTTTTTAGGGTTAG+GGG | - | chr6_4:80567301-80567320 | None:intergenic | 30.0% |
| AGAGACAGAAAAAGTAAATC+CGG | - | chr6_4:80567403-80567422 | None:intergenic | 30.0% | |
| !! | ATGGCTTTAAATAGTAGTAG+CGG | - | chr6_4:80567502-80567521 | None:intergenic | 30.0% |
| !! | AAACGTTGATTTCATGATCA+TGG | - | chr6_4:80567521-80567540 | None:intergenic | 30.0% |
| TATGTATTTGCAATCTAGGT+TGG | + | chr6_4:80567603-80567622 | Msa0999010:intron | 30.0% | |
| ACTTGTATAATTAGAACTCC+TGG | - | chr6_4:80567747-80567766 | None:intergenic | 30.0% | |
| ! | GGAGTTCTAATTATACAAGT+TGG | + | chr6_4:80567747-80567766 | Msa0999010:CDS | 30.0% |
| ATTCTACATACCTCAAAGAA+AGG | + | chr6_4:80567790-80567809 | Msa0999010:CDS | 30.0% | |
| ! | AATTGTGCAATAGGATTTTG+AGG | + | chr6_4:80567906-80567925 | Msa0999010:intron | 30.0% |
| AAAAGTGAACAAATCAGTTC+TGG | + | chr6_4:80567935-80567954 | Msa0999010:CDS | 30.0% | |
| TATTAACAATGTCAGCATGT+CGG | - | chr6_4:80568088-80568107 | None:intergenic | 30.0% | |
| !! | GTCATTATATGAGTTGATGT+CGG | + | chr6_4:80568133-80568152 | Msa0999010:intron | 30.0% |
| GAATATTACACACACTATGA+AGG | - | chr6_4:80568213-80568232 | None:intergenic | 30.0% | |
| AACTGCTATTGAAGGATTAT+TGG | + | chr6_4:80568410-80568429 | Msa0999010:CDS | 30.0% | |
| ATTGGAAATGAAAGCAATTC+AGG | + | chr6_4:80568446-80568465 | Msa0999010:CDS | 30.0% | |
| CTACCATATCATTATACAGA+TGG | + | chr6_4:80568701-80568720 | Msa0999010:intron | 30.0% | |
| ! | GTTTGTTGAAAAAATTGGGA+AGG | + | chr6_4:80568773-80568792 | Msa0999010:CDS | 30.0% |
| GGAATCGTTCTATCTAAATT+TGG | + | chr6_4:80568794-80568813 | Msa0999010:CDS | 30.0% | |
| ACAGTGTCTTCATTATTGTT+TGG | - | chr6_4:80568864-80568883 | None:intergenic | 30.0% | |
| AAGGTTGGAATGTGCAAATA+AGG | - | chr6_4:80560274-80560293 | None:intergenic | 35.0% | |
| GTGCAAGAGATTCATCATAA+TGG | + | chr6_4:80560388-80560407 | Msa0999010:CDS | 35.0% | |
| GCAAGAGATTCATCATAATG+GGG | + | chr6_4:80560390-80560409 | Msa0999010:CDS | 35.0% | |
| ! | GTTTTGTCACAAAACCTCTT+TGG | - | chr6_4:80560429-80560448 | None:intergenic | 35.0% |
| ! | TTTTCCCTGATGATCCTTTT+AGG | + | chr6_4:80560473-80560492 | Msa0999010:CDS | 35.0% |
| TTTGCCTAAAAGGATCATCA+GGG | - | chr6_4:80560480-80560499 | None:intergenic | 35.0% | |
| ATTTGCCTAAAAGGATCATC+AGG | - | chr6_4:80560481-80560500 | None:intergenic | 35.0% | |
| !! | ATCTCGTAGGTTGATTAAAG+GGG | + | chr6_4:80560519-80560538 | Msa0999010:CDS | 35.0% |
| ! | TTTGGTAACCACTCAAAGAT+TGG | - | chr6_4:80560559-80560578 | None:intergenic | 35.0% |
| ATAACTAATGCCTTGAGGAA+TGG | - | chr6_4:80560641-80560660 | None:intergenic | 35.0% | |
| AGTTTAACAATGAGATCGGA+CGG | - | chr6_4:80561081-80561100 | None:intergenic | 35.0% | |
| !!! | CACTAGTGTATGCTGTTTTT+GGG | + | chr6_4:80561431-80561450 | Msa0999010:CDS | 35.0% |
| !! | ACAATGTTGGTTCTGTTACA+GGG | - | chr6_4:80561534-80561553 | None:intergenic | 35.0% |
| !! | TACAATGTTGGTTCTGTTAC+AGG | - | chr6_4:80561535-80561554 | None:intergenic | 35.0% |
| CTGAAAAACACCAGTGATAA+AGG | - | chr6_4:80561581-80561600 | None:intergenic | 35.0% | |
| ! | CTTTATCACTGGTGTTTTTC+AGG | + | chr6_4:80561579-80561598 | Msa0999010:CDS | 35.0% |
| !! | TATTGGAGGAAAGTACTTGT+AGG | - | chr6_4:80561654-80561673 | None:intergenic | 35.0% |
| ATCACATGTCATCATATTGG+AGG | - | chr6_4:80561668-80561687 | None:intergenic | 35.0% | |
| ACTTGAACACACTTAATCTG+AGG | - | chr6_4:80561745-80561764 | None:intergenic | 35.0% | |
| !!! | TTCTACTTTTTGTGTGTGGT+TGG | + | chr6_4:80562238-80562257 | Msa0999010:intron | 35.0% |
| !!! | TTTGGTGCTGATTTTGTGAA+AGG | + | chr6_4:80562261-80562280 | Msa0999010:intron | 35.0% |
| CAAAAATGCCCTTGAATTGT+TGG | - | chr6_4:80562375-80562394 | None:intergenic | 35.0% | |
| !!! | CAACAATTCAAGGGCATTTT+TGG | + | chr6_4:80562373-80562392 | Msa0999010:CDS | 35.0% |
| CATCTTTACCAATAGACATG+AGG | + | chr6_4:80562444-80562463 | Msa0999010:CDS | 35.0% | |
| GATACTAACCTCATGTCTAT+TGG | - | chr6_4:80562455-80562474 | None:intergenic | 35.0% | |
| !! | AAAGCTCTAAGGTGTTGTTA+TGG | + | chr6_4:80563287-80563306 | Msa0999010:intron | 35.0% |
| !! | AAGCTCTAAGGTGTTGTTAT+GGG | + | chr6_4:80563288-80563307 | Msa0999010:intron | 35.0% |
| AACTTGTCAAAAAATTCGGC+TGG | + | chr6_4:80563898-80563917 | Msa0999010:intron | 35.0% | |
| AAAAGAGGAGGGAAAAATGT+GGG | + | chr6_4:80563987-80564006 | Msa0999010:intron | 35.0% | |
| ATTAGGGTAACAATAGCTTG+AGG | + | chr6_4:80564016-80564035 | Msa0999010:intron | 35.0% | |
| TTAGGGTAACAATAGCTTGA+GGG | + | chr6_4:80564017-80564036 | Msa0999010:intron | 35.0% | |
| ! | GGGTTAAGCTTTAGTAAGTT+AGG | + | chr6_4:80564037-80564056 | Msa0999010:intron | 35.0% |
| !!! | GTGCGATGCATTTTTTTAGA+TGG | + | chr6_4:80564112-80564131 | Msa0999010:intron | 35.0% |
| ! | ACTTGATAACAAAATTCGGC+TGG | + | chr6_4:80564261-80564280 | Msa0999010:intron | 35.0% |
| CCATTGTATCTTGCACATTT+AGG | - | chr6_4:80564325-80564344 | None:intergenic | 35.0% | |
| CCTAAATGTGCAAGATACAA+TGG | + | chr6_4:80564322-80564341 | Msa0999010:intron | 35.0% | |
| ACAATGGCTTAGAAAAGTTG+AGG | + | chr6_4:80564338-80564357 | Msa0999010:intron | 35.0% | |
| CAATGGCTTAGAAAAGTTGA+GGG | + | chr6_4:80564339-80564358 | Msa0999010:intron | 35.0% | |
| GAAAAGTTGAGGGTAAAATG+GGG | + | chr6_4:80564349-80564368 | Msa0999010:intron | 35.0% | |
| AAAAGTTGAGGGTAAAATGG+GGG | + | chr6_4:80564350-80564369 | Msa0999010:intron | 35.0% | |
| GAAGTCTAGAAATGAAAGAG+AGG | + | chr6_4:80564453-80564472 | Msa0999010:intron | 35.0% | |
| !!! | GACAGTGTTTTTTCTAATCG+TGG | + | chr6_4:80565108-80565127 | Msa0999010:intron | 35.0% |
| CCAACTACTACACATGTTAT+TGG | - | chr6_4:80565382-80565401 | None:intergenic | 35.0% | |
| CCAATAACATGTGTAGTAGT+TGG | + | chr6_4:80565379-80565398 | Msa0999010:CDS | 35.0% | |
| ATAACATGTGTAGTAGTTGG+TGG | + | chr6_4:80565382-80565401 | Msa0999010:CDS | 35.0% | |
| ! | GTTTTCACATACCTTGTGAA+AGG | + | chr6_4:80565406-80565425 | Msa0999010:CDS | 35.0% |
| AAGATCCAAACAAGTTCATG+AGG | - | chr6_4:80565858-80565877 | None:intergenic | 35.0% | |
| ! | ACATCATGTTACTTGACTAG+TGG | + | chr6_4:80565880-80565899 | Msa0999010:CDS | 35.0% |
| ATTAAGAATGAGAGCTCACA+TGG | + | chr6_4:80566383-80566402 | Msa0999010:intron | 35.0% | |
| !!! | ACTCATCATTTTGAAACGGA+GGG | - | chr6_4:80566462-80566481 | None:intergenic | 35.0% |
| !! | CGACACTCATCATTTTGAAA+CGG | - | chr6_4:80566466-80566485 | None:intergenic | 35.0% |
| GTAGTGTGCTGAGTATTAAT+TGG | + | chr6_4:80566600-80566619 | Msa0999010:intron | 35.0% | |
| TGTGCTGAGTATTAATTGGA+GGG | + | chr6_4:80566604-80566623 | Msa0999010:intron | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr6_4:80566704-80566723 | Msa0999010:intron | 35.0% |
| !! | AGAGTTGAGATATTTTCAGG+AGG | + | chr6_4:80566802-80566821 | Msa0999010:intron | 35.0% |
| GAGGTGTAATCAGAAATTCA+TGG | + | chr6_4:80566821-80566840 | Msa0999010:intron | 35.0% | |
| TGTGGTTCAAGCAGTAATAA+TGG | + | chr6_4:80567029-80567048 | Msa0999010:CDS | 35.0% | |
| !! | GGCTCTAACACTACAATTTT+TGG | + | chr6_4:80567050-80567069 | Msa0999010:CDS | 35.0% |
| ! | AGTGGTGTGTTGCTAAATAA+TGG | - | chr6_4:80567078-80567097 | None:intergenic | 35.0% |
| ATCATTGTATCTGCCATGTT+AGG | + | chr6_4:80567114-80567133 | Msa0999010:CDS | 35.0% | |
| TCATTGTATCTGCCATGTTA+GGG | + | chr6_4:80567115-80567134 | Msa0999010:CDS | 35.0% | |
| !! | GCCTTTTTAAGCATGGATAT+TGG | + | chr6_4:80567222-80567241 | Msa0999010:CDS | 35.0% |
| GCCAATATCCATGCTTAAAA+AGG | - | chr6_4:80567226-80567245 | None:intergenic | 35.0% | |
| !!! | TAACTCTTTTTAGGGTTAGG+GGG | - | chr6_4:80567300-80567319 | None:intergenic | 35.0% |
| ACAACACGTACGAACAAAAT+TGG | - | chr6_4:80567363-80567382 | None:intergenic | 35.0% | |
| ACGTGTTGTGACATTCAAAT+CGG | + | chr6_4:80567374-80567393 | Msa0999010:intron | 35.0% | |
| TCTCTGTATAAACCAGAATC+AGG | - | chr6_4:80567693-80567712 | None:intergenic | 35.0% | |
| TCTAATGCTTCAACAATTCC+AGG | + | chr6_4:80567726-80567745 | Msa0999010:CDS | 35.0% | |
| !! | ACAAATCAGTTCTGGAGATA+TGG | + | chr6_4:80567943-80567962 | Msa0999010:CDS | 35.0% |
| !! | CATGTCATACTCGTTTTAAC+TGG | + | chr6_4:80567971-80567990 | Msa0999010:CDS | 35.0% |
| TATGAAGGACATACACTCTT+TGG | - | chr6_4:80568198-80568217 | None:intergenic | 35.0% | |
| ATTGACACAACTGCTATTGA+AGG | + | chr6_4:80568402-80568421 | Msa0999010:CDS | 35.0% | |
| AGGCCATCTGTATAATGATA+TGG | - | chr6_4:80568707-80568726 | None:intergenic | 35.0% | |
| AAATTTGGAAGATGCAGTGT+TGG | + | chr6_4:80568809-80568828 | Msa0999010:CDS | 35.0% | |
| GTCTTCATTATTGTTTGGCT+TGG | - | chr6_4:80568859-80568878 | None:intergenic | 35.0% | |
| ! | AAGTGTGTACAACCTAGTTT+TGG | - | chr6_4:80568931-80568950 | None:intergenic | 35.0% |
| AAACTAGGTTGTACACACTT+TGG | + | chr6_4:80568931-80568950 | Msa0999010:three_prime_UTR | 35.0% | |
| ! | GAGGAGAAGAGAAGTAATTT+TGG | - | chr6_4:80569021-80569040 | None:intergenic | 35.0% |
| GTGAACTTATCAACCCAAAG+AGG | + | chr6_4:80560412-80560431 | Msa0999010:CDS | 40.0% | |
| TTGGCATAACTAATGCCTTG+AGG | - | chr6_4:80560646-80560665 | None:intergenic | 40.0% | |
| ! | TCTCGTTTTACCCCTTGTAA+TGG | + | chr6_4:80561004-80561023 | Msa0999010:intron | 40.0% |
| TTACACCACCACCATTACAA+GGG | - | chr6_4:80561018-80561037 | None:intergenic | 40.0% | |
| TTTACACCACCACCATTACA+AGG | - | chr6_4:80561019-80561038 | None:intergenic | 40.0% | |
| ! | TGGTGGTGTAAAGAGGAAAT+TGG | + | chr6_4:80561027-80561046 | Msa0999010:intron | 40.0% |
| AAAACAGCATACACTAGTGG+TGG | - | chr6_4:80561430-80561449 | None:intergenic | 40.0% | |
| CCAAAAACAGCATACACTAG+TGG | - | chr6_4:80561433-80561452 | None:intergenic | 40.0% | |
| !!! | CCACTAGTGTATGCTGTTTT+TGG | + | chr6_4:80561430-80561449 | Msa0999010:CDS | 40.0% |
| !!! | ATGCTGTTTTTGGGAGTTCT+AGG | + | chr6_4:80561440-80561459 | Msa0999010:CDS | 40.0% |
| TTCACGACAACCTTTATCAC+TGG | + | chr6_4:80561568-80561587 | Msa0999010:CDS | 40.0% | |
| !!! | TGGTGTTTTTCAGGCTTGTT+TGG | + | chr6_4:80561588-80561607 | Msa0999010:CDS | 40.0% |
| !!! | GGTGTTTTTCAGGCTTGTTT+GGG | + | chr6_4:80561589-80561608 | Msa0999010:CDS | 40.0% |
| !!! | AGGCTTGTTTGGGTTTTTTC+AGG | + | chr6_4:80561599-80561618 | Msa0999010:CDS | 40.0% |
| CGGACAAAAATGCAAGTACT+TGG | - | chr6_4:80562142-80562161 | None:intergenic | 40.0% | |
| TAAGAAACATGACACCAGCA+CGG | - | chr6_4:80562162-80562181 | None:intergenic | 40.0% | |
| !! | CTTTTTGTGTGTGGTTGGTT+TGG | + | chr6_4:80562243-80562262 | Msa0999010:intron | 40.0% |
| TGAAAGGACATTTGTAGGCT+TGG | + | chr6_4:80562277-80562296 | Msa0999010:intron | 40.0% | |
| GAAAGGACATTTGTAGGCTT+GGG | + | chr6_4:80562278-80562297 | Msa0999010:intron | 40.0% | |
| CATTTGTAGGCTTGGGATAT+TGG | + | chr6_4:80562285-80562304 | Msa0999010:intron | 40.0% | |
| ! | TTTTCCCATTCTACCATCAC+TGG | + | chr6_4:80562316-80562335 | Msa0999010:CDS | 40.0% |
| AAAGCCAGTGATGGTAGAAT+GGG | - | chr6_4:80562323-80562342 | None:intergenic | 40.0% | |
| TAAAGCCAGTGATGGTAGAA+TGG | - | chr6_4:80562324-80562343 | None:intergenic | 40.0% | |
| !! | TTCTACCATCACTGGCTTTA+TGG | + | chr6_4:80562324-80562343 | Msa0999010:CDS | 40.0% |
| !! | TCTACCATCACTGGCTTTAT+GGG | + | chr6_4:80562325-80562344 | Msa0999010:CDS | 40.0% |
| TCTCATCCTCCAACAATTCA+AGG | + | chr6_4:80562363-80562382 | Msa0999010:CDS | 40.0% | |
| CTCATCCTCCAACAATTCAA+GGG | + | chr6_4:80562364-80562383 | Msa0999010:CDS | 40.0% | |
| AAATGCCCTTGAATTGTTGG+AGG | - | chr6_4:80562372-80562391 | None:intergenic | 40.0% | |
| !!! | CACAGCTATAACGTTGGTTT+TGG | - | chr6_4:80562416-80562435 | None:intergenic | 40.0% |
| AACGTTATAGCTGTGCTAGA+GGG | + | chr6_4:80562421-80562440 | Msa0999010:CDS | 40.0% | |
| AAGTGAAAGATATCGCAGCA+GGG | + | chr6_4:80562717-80562736 | Msa0999010:intron | 40.0% | |
| TACAAAACCCGTACATCGTA+CGG | - | chr6_4:80562948-80562967 | None:intergenic | 40.0% | |
| GTCTAGTGGTAAAAGCTCTA+AGG | + | chr6_4:80563276-80563295 | Msa0999010:intron | 40.0% | |
| !! | AAGGTGTTGTTATGGGTAGT+TGG | + | chr6_4:80563295-80563314 | Msa0999010:intron | 40.0% |
| TCTATTTAGACCCGCCAAAA+AGG | + | chr6_4:80563351-80563370 | Msa0999010:intron | 40.0% | |
| CTATTTAGACCCGCCAAAAA+GGG | + | chr6_4:80563352-80563371 | Msa0999010:intron | 40.0% | |
| TATGTCAACGTGTGGAAAGA+CGG | + | chr6_4:80563617-80563636 | Msa0999010:intron | 40.0% | |
| GATTCAATGGCTCAGAAAAG+AGG | + | chr6_4:80563972-80563991 | Msa0999010:intron | 40.0% | |
| GAAAAGAGGAGGGAAAAATG+TGG | + | chr6_4:80563986-80564005 | Msa0999010:intron | 40.0% | |
| AAAGTTGAGGGTAAAATGGG+GGG | + | chr6_4:80564351-80564370 | Msa0999010:intron | 40.0% | |
| TTAGGGCAACAATAGCTTGA+AGG | + | chr6_4:80564380-80564399 | Msa0999010:intron | 40.0% | |
| TAGGGCAACAATAGCTTGAA+GGG | + | chr6_4:80564381-80564400 | Msa0999010:intron | 40.0% | |
| AGATGGGAAACTACAGTTCT+TGG | + | chr6_4:80564661-80564680 | Msa0999010:CDS | 40.0% | |
| ! | CTTGCAATTTACAAGGCACT+TGG | + | chr6_4:80564702-80564721 | Msa0999010:CDS | 40.0% |
| GTGGAATTAAAATGCCCTAG+AGG | - | chr6_4:80564871-80564890 | None:intergenic | 40.0% | |
| CATGTTGTGTACCTTTCACA+AGG | - | chr6_4:80565420-80565439 | None:intergenic | 40.0% | |
| ! | CTTGTGAAAGGTACACAACA+TGG | + | chr6_4:80565418-80565437 | Msa0999010:CDS | 40.0% |
| ATGAAAGCTGGACTAATCAG+TGG | + | chr6_4:80565645-80565664 | Msa0999010:CDS | 40.0% | |
| !! | CAGTGGAGTATTGTCATTAG+CGG | + | chr6_4:80565662-80565681 | Msa0999010:CDS | 40.0% |
| ATGTAGGAAGGAATAGCCAT+AGG | + | chr6_4:80565769-80565788 | Msa0999010:intron | 40.0% | |
| ACTGCTAATACACCTCATGA+TGG | + | chr6_4:80565808-80565827 | Msa0999010:CDS | 40.0% | |
| CTGCTAATACACCTCATGAT+GGG | + | chr6_4:80565809-80565828 | Msa0999010:CDS | 40.0% | |
| ATCTCTTTGTTCCCATCATG+AGG | - | chr6_4:80565823-80565842 | None:intergenic | 40.0% | |
| ! | TTTGGCCTCATGAACTTGTT+TGG | + | chr6_4:80565850-80565869 | Msa0999010:CDS | 40.0% |
| !! | CCTTTTAGGTCACAATCACA+AGG | - | chr6_4:80565971-80565990 | None:intergenic | 40.0% |
| CCTTGTGATTGTGACCTAAA+AGG | + | chr6_4:80565968-80565987 | Msa0999010:intron | 40.0% | |
| !!! | CACTCATCATTTTGAAACGG+AGG | - | chr6_4:80566463-80566482 | None:intergenic | 40.0% |
| GTGTGCTGAGTATTAATTGG+AGG | + | chr6_4:80566603-80566622 | Msa0999010:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr6_4:80566708-80566727 | Msa0999010:intron | 40.0% |
| TAAGTTAAACGACAGACGGA+TGG | + | chr6_4:80566759-80566778 | Msa0999010:intron | 40.0% | |
| ! | TGTAGGACCATTTTCCAAGA+CGG | + | chr6_4:80566966-80566985 | Msa0999010:intron | 40.0% |
| ATTGTAATTCACAGCCGTCT+TGG | - | chr6_4:80566983-80567002 | None:intergenic | 40.0% | |
| ATAGCTGATAGAGCAACAAG+TGG | - | chr6_4:80567096-80567115 | None:intergenic | 40.0% | |
| TATCTGCATGAGTGCATTCT+TGG | + | chr6_4:80567194-80567213 | Msa0999010:CDS | 40.0% | |
| ATCTGCATGAGTGCATTCTT+GGG | + | chr6_4:80567195-80567214 | Msa0999010:CDS | 40.0% | |
| ! | TTTGCAATCTAGGTTGGACT+AGG | + | chr6_4:80567609-80567628 | Msa0999010:intron | 40.0% |
| ! | GTTGGACTAGGTTTACTTAG+AGG | + | chr6_4:80567621-80567640 | Msa0999010:CDS | 40.0% |
| CTTGGAAAGTTACCTGATTC+TGG | + | chr6_4:80567678-80567697 | Msa0999010:CDS | 40.0% | |
| CTCCTCATACTTGAAGCATA+TGG | + | chr6_4:80569035-80569054 | Msa0999010:three_prime_UTR | 40.0% | |
| TGCCATATGCTTCAAGTATG+AGG | - | chr6_4:80569040-80569059 | None:intergenic | 40.0% | |
| AGGAATGGCAAGACTAGCAA+TGG | - | chr6_4:80560626-80560645 | None:intergenic | 45.0% | |
| AGGAGGAAGATTGGCAAGTT+TGG | - | chr6_4:80560665-80560684 | None:intergenic | 45.0% | |
| TTACAAAGGCCAATGAGAGG+AGG | - | chr6_4:80560682-80560701 | None:intergenic | 45.0% | |
| GACTTACAAAGGCCAATGAG+AGG | - | chr6_4:80560685-80560704 | None:intergenic | 45.0% | |
| AGAGGTTGTCGAGACATCAA+AGG | - | chr6_4:80560903-80560922 | None:intergenic | 45.0% | |
| ! | ATCACGGTAAGAGAGGGTAT+AGG | + | chr6_4:80560960-80560979 | Msa0999010:intron | 45.0% |
| ! | TCACGGTAAGAGAGGGTATA+GGG | + | chr6_4:80560961-80560980 | Msa0999010:intron | 45.0% |
| ! | CGTTTTACCCCTTGTAATGG+TGG | + | chr6_4:80561007-80561026 | Msa0999010:intron | 45.0% |
| TTTACCCCTTGTAATGGTGG+TGG | + | chr6_4:80561010-80561029 | Msa0999010:intron | 45.0% | |
| TACACCACCACCATTACAAG+GGG | - | chr6_4:80561017-80561036 | None:intergenic | 45.0% | |
| !! | GTAATGGTGGTGGTGTAAAG+AGG | + | chr6_4:80561020-80561039 | Msa0999010:intron | 45.0% |
| AGAGGAAATTGGATTTCCGG+TGG | + | chr6_4:80561038-80561057 | Msa0999010:intron | 45.0% | |
| TGGATTTCCGGTGGTTATAG+CGG | + | chr6_4:80561047-80561066 | Msa0999010:intron | 45.0% | |
| !!! | TTTTGGGAGTTCTAGGCACA+TGG | + | chr6_4:80561447-80561466 | Msa0999010:CDS | 45.0% |
| ! | ACTTGCATTTTTGTCCGTGC+TGG | + | chr6_4:80562145-80562164 | Msa0999010:intron | 45.0% |
| CTCTAGCACAGCTATAACGT+TGG | - | chr6_4:80562422-80562441 | None:intergenic | 45.0% | |
| CAACGTTATAGCTGTGCTAG+AGG | + | chr6_4:80562420-80562439 | Msa0999010:CDS | 45.0% | |
| GAAGTGAAAGATATCGCAGC+AGG | + | chr6_4:80562716-80562735 | Msa0999010:intron | 45.0% | |
| ATTGTGGTTCACCGTAGTTG+TGG | - | chr6_4:80562747-80562766 | None:intergenic | 45.0% | |
| ACTCTAACCCGTACGATGTA+CGG | + | chr6_4:80562937-80562956 | Msa0999010:intron | 45.0% | |
| ACAAAACCCGTACATCGTAC+GGG | - | chr6_4:80562947-80562966 | None:intergenic | 45.0% | |
| GGCGGGATTAGGGTTAATTA+AGG | + | chr6_4:80563373-80563392 | Msa0999010:intron | 45.0% | |
| TCAATGGCTCAGAAAAGAGG+AGG | + | chr6_4:80563975-80563994 | Msa0999010:intron | 45.0% | |
| CAATGGCTCAGAAAAGAGGA+GGG | + | chr6_4:80563976-80563995 | Msa0999010:intron | 45.0% | |
| ! | CACTTGGTGAGTGCTCTATT+TGG | + | chr6_4:80564718-80564737 | Msa0999010:intron | 45.0% |
| TAGTGCACCACTCAAACTTG+TGG | + | chr6_4:80564844-80564863 | Msa0999010:intron | 45.0% | |
| TAGAGGTCCACAAGTTTGAG+TGG | - | chr6_4:80564854-80564873 | None:intergenic | 45.0% | |
| ACTCAAACTTGTGGACCTCT+AGG | + | chr6_4:80564853-80564872 | Msa0999010:intron | 45.0% | |
| CTCAAACTTGTGGACCTCTA+GGG | + | chr6_4:80564854-80564873 | Msa0999010:intron | 45.0% | |
| GCAGATACCCAAAAGAGTTG+TGG | - | chr6_4:80565352-80565371 | None:intergenic | 45.0% | |
| TAGGTGGGACATCTAGACAA+AGG | + | chr6_4:80565564-80565583 | Msa0999010:intron | 45.0% | |
| !!! | CGGAGGGAGTATCTTTTTTC+AGG | - | chr6_4:80566446-80566465 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr6_4:80566707-80566726 | Msa0999010:intron | 45.0% |
| TTCACAGCCGTCTTGGAAAA+TGG | - | chr6_4:80566976-80566995 | None:intergenic | 45.0% | |
| ACGGCTGTGAATTACAATGC+AGG | + | chr6_4:80566985-80567004 | Msa0999010:CDS | 45.0% | |
| GTGACATTCAAATCGGAGAC+CGG | + | chr6_4:80567381-80567400 | Msa0999010:intron | 45.0% | |
| AGTAGTAGCGGTCATGATCA+TGG | - | chr6_4:80567490-80567509 | None:intergenic | 45.0% | |
| AACTTTCCAAGCTTGCATGC+TGG | - | chr6_4:80567669-80567688 | None:intergenic | 45.0% | |
| TACAGACACCGAACATGACA+TGG | + | chr6_4:80568059-80568078 | Msa0999010:intron | 45.0% | |
| AGACGTATCACACGAAGTGT+CGG | - | chr6_4:80568172-80568191 | None:intergenic | 45.0% | |
| ! | AGATGGCCTTAGTAAACCCT+AGG | + | chr6_4:80568718-80568737 | Msa0999010:intron | 45.0% |
| CTCCAACCTAGGGTTTACTA+AGG | - | chr6_4:80568727-80568746 | None:intergenic | 45.0% | |
| ! | CTTAGTAAACCCTAGGTTGG+AGG | + | chr6_4:80568725-80568744 | Msa0999010:CDS | 45.0% |
| ! | AAACCCTAGGTTGGAGGTTA+TGG | + | chr6_4:80568731-80568750 | Msa0999010:CDS | 45.0% |
| TCTCCATAACCTCCAACCTA+GGG | - | chr6_4:80568737-80568756 | None:intergenic | 45.0% | |
| TTCTCCATAACCTCCAACCT+AGG | - | chr6_4:80568738-80568757 | None:intergenic | 45.0% | |
| !!! | ATTTATTTTTTAATTAAACA+AGG | - | chr6_4:80562670-80562689 | None:intergenic | 5.0% |
| !! | CATTTATATATATATATAAA+TGG | + | chr6_4:80563415-80563434 | Msa0999010:intron | 5.0% |
| !! | GCTAGTCTTGCCATTCCTCA+AGG | + | chr6_4:80560628-80560647 | Msa0999010:CDS | 50.0% |
| GCCAATCTTCCTCCTCTCAT+TGG | + | chr6_4:80560670-80560689 | Msa0999010:CDS | 50.0% | |
| GCCAATGAGAGGAGGAAGAT+TGG | - | chr6_4:80560674-80560693 | None:intergenic | 50.0% | |
| GATGTCTCGACAACCTCTCA+AGG | + | chr6_4:80560905-80560924 | Msa0999010:intron | 50.0% | |
| GTATATCTCGGCTCCTTGAG+AGG | - | chr6_4:80560921-80560940 | None:intergenic | 50.0% | |
| GGATTTCCGGTGGTTATAGC+GGG | + | chr6_4:80561048-80561067 | Msa0999010:intron | 50.0% | |
| !! | AGTTCTAGGCACATGGCAGT+TGG | + | chr6_4:80561454-80561473 | Msa0999010:CDS | 50.0% |
| ! | GTTCTAGGCACATGGCAGTT+GGG | + | chr6_4:80561455-80561474 | Msa0999010:CDS | 50.0% |
| TGTTCGTGTCGTGTCTGTGT+TGG | - | chr6_4:80561786-80561805 | None:intergenic | 50.0% | |
| !! | ACCATCACTGGCTTTATGGG+AGG | + | chr6_4:80562328-80562347 | Msa0999010:CDS | 50.0% |
| !! | CCATCACTGGCTTTATGGGA+GGG | + | chr6_4:80562329-80562348 | Msa0999010:CDS | 50.0% |
| GAAAGATATCGCAGCAGGGT+TGG | + | chr6_4:80562721-80562740 | Msa0999010:intron | 50.0% | |
| CTCTAACCCGTACGATGTAC+GGG | + | chr6_4:80562938-80562957 | Msa0999010:intron | 50.0% | |
| TTTAGACCCGCCAAAAAGGG+CGG | + | chr6_4:80563355-80563374 | Msa0999010:intron | 50.0% | |
| ! | AACCCTAATCCCGCCCTTTT+TGG | - | chr6_4:80563368-80563387 | None:intergenic | 50.0% |
| CATGAGTGCATTCTTGGGTG+TGG | + | chr6_4:80567200-80567219 | Msa0999010:CDS | 50.0% | |
| !! | GGGTGTGGCCTTTTTAAGCA+TGG | + | chr6_4:80567215-80567234 | Msa0999010:CDS | 50.0% |
| ! | GAGTACTCACAGAGAGCATG+AGG | - | chr6_4:80567248-80567267 | None:intergenic | 50.0% |
| TTTCCAAGCTTGCATGCTGG+TGG | - | chr6_4:80567666-80567685 | None:intergenic | 50.0% | |
| ! | GTCGGTGTCCATGTCATGTT+CGG | - | chr6_4:80568070-80568089 | None:intergenic | 50.0% |
| GGCCTTAGTAAACCCTAGGT+TGG | + | chr6_4:80568722-80568741 | Msa0999010:CDS | 50.0% | |
| ! | TTCCGGTGGTTATAGCGGGA+CGG | + | chr6_4:80561052-80561071 | Msa0999010:intron | 55.0% |
| CCCTCCCATAAAGCCAGTGA+TGG | - | chr6_4:80562332-80562351 | None:intergenic | 55.0% | |
| !! | AGCAGGGTTGGCCACAACTA+CGG | + | chr6_4:80562733-80562752 | Msa0999010:intron | 55.0% |
| TTAGACCCGCCAAAAAGGGC+GGG | + | chr6_4:80563356-80563375 | Msa0999010:intron | 55.0% | |
| !! | CTAATCCCGCCCTTTTTGGC+GGG | - | chr6_4:80563364-80563383 | None:intergenic | 55.0% |
| ! | CCTAATCCCGCCCTTTTTGG+CGG | - | chr6_4:80563365-80563384 | None:intergenic | 55.0% |
| CGCCAAAAAGGGCGGGATTA+GGG | + | chr6_4:80563363-80563382 | Msa0999010:intron | 55.0% | |
| AGACCACCAGCATGCAAGCT+TGG | + | chr6_4:80567660-80567679 | Msa0999010:CDS | 55.0% | |
| CACCGTCCCGCTATAACCAC+CGG | - | chr6_4:80561057-80561076 | None:intergenic | 60.0% | |
| CCGCCAAAAAGGGCGGGATT+AGG | + | chr6_4:80563362-80563381 | Msa0999010:intron | 60.0% | |
| ! | CGGTGGTTATAGCGGGACGG+TGG | + | chr6_4:80561055-80561074 | Msa0999010:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 80560261 | 80569076 | 80560261 | ID=Msa0999010;Name=Msa0999010 |
| chr6_4 | mRNA | 80560261 | 80569076 | 80560261 | ID=Msa0999010-mRNA-1;Parent=Msa0999010;Name=Msa0999010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=118|1|1|1|1|1|12|189|639 |
| chr6_4 | exon | 80560261 | 80560697 | 80560261 | ID=Msa0999010-mRNA-1:exon:15291;Parent=Msa0999010-mRNA-1 |
| chr6_4 | exon | 80561413 | 80561620 | 80561413 | ID=Msa0999010-mRNA-1:exon:15292;Parent=Msa0999010-mRNA-1 |
| chr6_4 | exon | 80562294 | 80562465 | 80562294 | ID=Msa0999010-mRNA-1:exon:15293;Parent=Msa0999010-mRNA-1 |
| chr6_4 | exon | 80564658 | 80564723 | 80564658 | ID=Msa0999010-mRNA-1:exon:15294;Parent=Msa0999010-mRNA-1 |
| chr6_4 | exon | 80565337 | 80565450 | 80565337 | ID=Msa0999010-mRNA-1:exon:15295;Parent=Msa0999010-mRNA-1 |
| chr6_4 | exon | 80565567 | 80565683 | 80565567 | ID=Msa0999010-mRNA-1:exon:15296;Parent=Msa0999010-mRNA-1 |
| chr6_4 | exon | 80565775 | 80565901 | 80565775 | ID=Msa0999010-mRNA-1:exon:15297;Parent=Msa0999010-mRNA-1 |
| chr6_4 | exon | 80566971 | 80567257 | 80566971 | ID=Msa0999010-mRNA-1:exon:15298;Parent=Msa0999010-mRNA-1 |
| chr6_4 | exon | 80567621 | 80567811 | 80567621 | ID=Msa0999010-mRNA-1:exon:15299;Parent=Msa0999010-mRNA-1 |
| chr6_4 | exon | 80567919 | 80567992 | 80567919 | ID=Msa0999010-mRNA-1:exon:15300;Parent=Msa0999010-mRNA-1 |
| chr6_4 | exon | 80568391 | 80568467 | 80568391 | ID=Msa0999010-mRNA-1:exon:15301;Parent=Msa0999010-mRNA-1 |
| chr6_4 | exon | 80568720 | 80569076 | 80568720 | ID=Msa0999010-mRNA-1:exon:15302;Parent=Msa0999010-mRNA-1 |
| chr6_4 | five_prime_UTR | 80560261 | 80560378 | 80560261 | ID=Msa0999010-mRNA-1:five_prime_utr;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80560379 | 80560697 | 80560379 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80561413 | 80561620 | 80561413 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80562294 | 80562465 | 80562294 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80564658 | 80564723 | 80564658 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80565337 | 80565450 | 80565337 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80565567 | 80565683 | 80565567 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80565775 | 80565901 | 80565775 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80566971 | 80567257 | 80566971 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80567621 | 80567811 | 80567621 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80567919 | 80567992 | 80567919 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80568391 | 80568467 | 80568391 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | CDS | 80568720 | 80568887 | 80568720 | ID=Msa0999010-mRNA-1:cds;Parent=Msa0999010-mRNA-1 |
| chr6_4 | three_prime_UTR | 80568888 | 80569076 | 80568888 | ID=Msa0999010-mRNA-1:three_prime_utr;Parent=Msa0999010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
