Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999770 | XP_003620624.1 | 88.925 | 307 | 5 | 2 | 1 | 278 | 1 | 307 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999770 | G7KPF3 | 88.925 | 307 | 5 | 2 | 1 | 278 | 1 | 307 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0999770 | Msa1388930 | 0.804494 | 2.102950e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999770 | MtrunA17_Chr6g0486001 | 88.925 | 307 | 5 | 2 | 1 | 278 | 1 | 307 | 0.0 | 541 |
| Msa0999770 | MtrunA17_Chr2g0331671 | 49.038 | 312 | 120 | 7 | 1 | 277 | 2 | 309 | 8.59e-93 | 276 |
| Msa0999770 | MtrunA17_Chr4g0053001 | 36.335 | 322 | 159 | 8 | 1 | 278 | 12 | 331 | 1.41e-50 | 169 |
| Msa0999770 | MtrunA17_Chr8g0392551 | 37.217 | 309 | 149 | 10 | 1 | 277 | 1 | 296 | 2.42e-48 | 162 |
| Msa0999770 | MtrunA17_Chr6g0483441 | 35.331 | 317 | 142 | 11 | 1 | 277 | 1 | 294 | 3.98e-42 | 146 |
| Msa0999770 | MtrunA17_Chr4g0038691 | 34.967 | 306 | 151 | 10 | 1 | 265 | 6 | 304 | 4.46e-40 | 141 |
| Msa0999770 | MtrunA17_Chr3g0091821 | 36.232 | 138 | 84 | 2 | 124 | 260 | 42 | 176 | 2.78e-19 | 83.6 |
| Msa0999770 | MtrunA17_Chr3g0090061 | 26.697 | 221 | 119 | 7 | 85 | 265 | 118 | 335 | 4.09e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999770 | AT3G24605.1 | 40.777 | 309 | 133 | 8 | 1 | 274 | 3 | 296 | 9.61e-64 | 202 |
| Msa0999770 | AT1G45688.1 | 36.257 | 342 | 142 | 11 | 1 | 272 | 1 | 336 | 3.04e-46 | 158 |
| Msa0999770 | AT3G24600.1 | 46.405 | 153 | 81 | 1 | 124 | 275 | 150 | 302 | 2.24e-43 | 150 |
| Msa0999770 | AT5G42860.1 | 33.974 | 312 | 137 | 9 | 1 | 257 | 1 | 298 | 5.36e-42 | 147 |
| Msa0999770 | AT2G41990.1 | 32.558 | 301 | 161 | 10 | 1 | 269 | 1 | 291 | 5.54e-28 | 109 |
| Msa0999770 | AT1G45688.2 | 36.885 | 244 | 98 | 10 | 1 | 194 | 1 | 238 | 2.62e-27 | 106 |
| Msa0999770 | AT4G35170.1 | 29.225 | 284 | 148 | 9 | 15 | 257 | 8 | 279 | 2.31e-25 | 102 |
| Msa0999770 | AT3G08490.1 | 25.000 | 148 | 109 | 2 | 130 | 275 | 121 | 268 | 3.29e-12 | 65.5 |
Find 60 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGACTTTGAACGTAATA+AGG | 0.197913 | 6_4:-82231156 | None:intergenic |
| TACTGGCTTGAGATATATTA+AGG | 0.207723 | 6_4:+82233960 | Msa0999770:three_prime_UTR |
| ATACAACATCTAAGTGGTTT+TGG | 0.309066 | 6_4:+82233895 | Msa0999770:exon |
| AATAGAAAAGTGAATGATAA+AGG | 0.318907 | 6_4:+82231330 | Msa0999770:CDS |
| TCACCTTCACATCAATCTTA+TGG | 0.323598 | 6_4:+82231237 | Msa0999770:CDS |
| TAAAGGGTGGATTGGATCTA+AGG | 0.346851 | 6_4:+82231347 | Msa0999770:CDS |
| ACAGTACATAACTTCTACTT+TGG | 0.351398 | 6_4:+82232787 | Msa0999770:CDS |
| TGACAATTAAGAGGGTGTTT+AGG | 0.362099 | 6_4:+82234015 | Msa0999770:three_prime_UTR |
| AAGGACTTTGAACGTAATAA+GGG | 0.376152 | 6_4:-82231155 | None:intergenic |
| GCTATTTCAGTTCATTCTAC+TGG | 0.384851 | 6_4:+82233943 | Msa0999770:three_prime_UTR |
| TTTGATGTACTTGTTGTTGT+GGG | 0.406752 | 6_4:-82233852 | None:intergenic |
| TCATGAGAAGATTCTCTTGA+AGG | 0.427779 | 6_4:-82231174 | None:intergenic |
| GCTTAGTTATGACAATTAAG+AGG | 0.436532 | 6_4:+82234006 | Msa0999770:three_prime_UTR |
| TCTTCTTCAAGTAGAATCTC+TGG | 0.444326 | 6_4:+82231276 | Msa0999770:CDS |
| GAAGAAGAAAATGGTGGTTA+TGG | 0.447068 | 6_4:+82231375 | Msa0999770:CDS |
| GTGAATGATAAAGGGTGGAT+TGG | 0.450115 | 6_4:+82231339 | Msa0999770:CDS |
| TTCACTGTAAGCATCTTAGT+TGG | 0.459875 | 6_4:-82232835 | None:intergenic |
| ACTGGCTTGAGATATATTAA+GGG | 0.461338 | 6_4:+82233961 | Msa0999770:three_prime_UTR |
| GTTTGATGTACTTGTTGTTG+TGG | 0.464472 | 6_4:-82233853 | None:intergenic |
| GGAAGCAAGGTTCCATTGTA+TGG | 0.470323 | 6_4:+82233683 | Msa0999770:CDS |
| TGGTGCAGATGTTGCTAGCT+CGG | 0.471095 | 6_4:+82233709 | Msa0999770:CDS |
| AAGTCGCGCGGAAATGTTGT+AGG | 0.496383 | 6_4:+82233773 | Msa0999770:CDS |
| AAGGTGATTGAAGAAGAAAA+TGG | 0.496674 | 6_4:+82231366 | Msa0999770:CDS |
| GTATATTGACAGACACTGTT+CGG | 0.499883 | 6_4:-82233658 | None:intergenic |
| TTTGTGATCTTGGTGATGAT+GGG | 0.501451 | 6_4:-82231125 | None:intergenic |
| GGAGAAGGGTCAGACGTCAC+TGG | 0.514181 | 6_4:+82232808 | Msa0999770:CDS |
| CATAACTTCTACTTTGGAGA+AGG | 0.514215 | 6_4:+82232793 | Msa0999770:CDS |
| TTGAAGAAGAAGCTCTTGAA+TGG | 0.526972 | 6_4:-82231263 | None:intergenic |
| ATAGAAAAGTGAATGATAAA+GGG | 0.527874 | 6_4:+82231331 | Msa0999770:CDS |
| CGGAAATGTTGTAGGCAAGT+TGG | 0.532289 | 6_4:+82233781 | Msa0999770:CDS |
| AAGGTTCCATTGTATGGCGC+TGG | 0.535461 | 6_4:+82233689 | Msa0999770:CDS |
| TCAAGAGAATCTTCTCATGA+TGG | 0.544641 | 6_4:+82231177 | Msa0999770:CDS |
| GAAAAGTGAATGATAAAGGG+TGG | 0.557185 | 6_4:+82231334 | Msa0999770:CDS |
| CTTAGTTATGACAATTAAGA+GGG | 0.558237 | 6_4:+82234007 | Msa0999770:three_prime_UTR |
| AACAATGCAACCAAGTCCAA+TGG | 0.570691 | 6_4:+82231212 | Msa0999770:CDS |
| TGATGTACTTGTTGTTGTGG+GGG | 0.577495 | 6_4:-82233850 | None:intergenic |
| ATACATAAGATTCACTGACT+TGG | 0.579991 | 6_4:-82232917 | None:intergenic |
| TTGATGTACTTGTTGTTGTG+GGG | 0.580202 | 6_4:-82233851 | None:intergenic |
| TGATGTGAAGGTGAATCCAT+TGG | 0.581487 | 6_4:-82231228 | None:intergenic |
| GAAGGTGAATCCATTGGACT+TGG | 0.584702 | 6_4:-82231222 | None:intergenic |
| GTGATCGAAATGGAGTTTCG+AGG | 0.592967 | 6_4:+82231409 | Msa0999770:CDS |
| TCTGATCTTACAGTTGCGAC+CGG | 0.593421 | 6_4:+82232940 | Msa0999770:CDS |
| GTCTTTGAAGTTAAGTCGCG+CGG | 0.601720 | 6_4:+82233761 | Msa0999770:CDS |
| TGTCAATATACAAGGAAGCA+AGG | 0.603269 | 6_4:+82233670 | Msa0999770:CDS |
| ACAGTGTCTGTCAATATACA+AGG | 0.604063 | 6_4:+82233662 | Msa0999770:CDS |
| ATAACTTCTACTTTGGAGAA+GGG | 0.607546 | 6_4:+82232794 | Msa0999770:CDS |
| TCTGCACCAGCGCCATACAA+TGG | 0.611769 | 6_4:-82233695 | None:intergenic |
| TCGAAATGGAGTTTCGAGGA+GGG | 0.621143 | 6_4:+82231413 | Msa0999770:CDS |
| ATGTTGTAGGCAAGTTGGTG+AGG | 0.621904 | 6_4:+82233786 | Msa0999770:CDS |
| AATGAACTGAAATAGCTCAC+AGG | 0.622836 | 6_4:-82233936 | None:intergenic |
| GTGATTGAAGAAGAAAATGG+TGG | 0.627521 | 6_4:+82231369 | Msa0999770:CDS |
| AGGACTTTGAACGTAATAAG+GGG | 0.639543 | 6_4:-82231154 | None:intergenic |
| ATGTAGATACAACATCTAAG+TGG | 0.640814 | 6_4:+82233889 | Msa0999770:exon |
| TGACCATAAGATTGATGTGA+AGG | 0.643898 | 6_4:-82231240 | None:intergenic |
| TCTTCAAGTAGAATCTCTGG+TGG | 0.645890 | 6_4:+82231279 | Msa0999770:CDS |
| TGTTAGAATACTTACCTCGC+CGG | 0.646947 | 6_4:-82232959 | None:intergenic |
| ATCGAAATGGAGTTTCGAGG+AGG | 0.650916 | 6_4:+82231412 | Msa0999770:CDS |
| TATTGACAGACACTGTTCGG+CGG | 0.651348 | 6_4:-82233655 | None:intergenic |
| TCTTACAGTTGCGACCGGCG+AGG | 0.653403 | 6_4:+82232945 | Msa0999770:CDS |
| GTTGCTAGCTCGGTGAACAA+CGG | 0.683429 | 6_4:+82233719 | Msa0999770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATTTATATTTTTATAG+AGG | + | chr6_4:82234076-82234095 | Msa0999770:three_prime_UTR | 10.0% |
| !!! | CTAATTGTTTTTTTAATCAA+AGG | + | chr6_4:82231894-82231913 | Msa0999770:intron | 15.0% |
| !!! | TGTTTTTTATTTTAGTTAGA+AGG | + | chr6_4:82231930-82231949 | Msa0999770:intron | 15.0% |
| !! | AAAATGGAATTACTAATATT+TGG | + | chr6_4:82232099-82232118 | Msa0999770:intron | 15.0% |
| !! | AATGAAATTTCAAAAAAGTT+GGG | - | chr6_4:82232413-82232432 | None:intergenic | 15.0% |
| !! | AAATGAAATTTCAAAAAAGT+TGG | - | chr6_4:82232414-82232433 | None:intergenic | 15.0% |
| !! | AATAGAAAAGTGAATGATAA+AGG | + | chr6_4:82231330-82231349 | Msa0999770:CDS | 20.0% |
| !! | ATAGAAAAGTGAATGATAAA+GGG | + | chr6_4:82231331-82231350 | Msa0999770:CDS | 20.0% |
| !!! | TTTGTTTTGTTTGATCATTT+GGG | + | chr6_4:82231478-82231497 | Msa0999770:intron | 20.0% |
| !!! | TCACAATTGTGTTTTAATTA+AGG | + | chr6_4:82231564-82231583 | Msa0999770:intron | 20.0% |
| !!! | TTGATAGTTAAATTCATACT+AGG | + | chr6_4:82232059-82232078 | Msa0999770:intron | 20.0% |
| !! | TGAATAACTTATAGATGTTT+AGG | - | chr6_4:82233437-82233456 | None:intergenic | 20.0% |
| !!! | AACTATAACTTGTTTTCATA+TGG | - | chr6_4:82234105-82234124 | None:intergenic | 20.0% |
| !!! | TGGTTATAATAGCTCTTTTT+TGG | + | chr6_4:82231299-82231318 | Msa0999770:CDS | 25.0% |
| !!! | GGTTATAATAGCTCTTTTTT+GGG | + | chr6_4:82231300-82231319 | Msa0999770:CDS | 25.0% |
| !!! | GTTATAATAGCTCTTTTTTG+GGG | + | chr6_4:82231301-82231320 | Msa0999770:CDS | 25.0% |
| !!! | GTTTGTTTTGTTTGATCATT+TGG | + | chr6_4:82231477-82231496 | Msa0999770:intron | 25.0% |
| ! | CAGGAAAATATATGATCATT+TGG | + | chr6_4:82232008-82232027 | Msa0999770:intron | 25.0% |
| ! | ATTCATACTAGGAGATATTA+TGG | + | chr6_4:82232070-82232089 | Msa0999770:intron | 25.0% |
| ! | CTTAGTTATGACAATTAAGA+GGG | + | chr6_4:82234007-82234026 | Msa0999770:three_prime_UTR | 25.0% |
| AAGGACTTTGAACGTAATAA+GGG | - | chr6_4:82231158-82231177 | None:intergenic | 30.0% | |
| AAGGTGATTGAAGAAGAAAA+TGG | + | chr6_4:82231366-82231385 | Msa0999770:CDS | 30.0% | |
| !!! | GTTTTAATTAAGGCTCTGTT+TGG | + | chr6_4:82231574-82231593 | Msa0999770:intron | 30.0% |
| CTTGCAAAGCTTATAGAAAT+AGG | + | chr6_4:82231715-82231734 | Msa0999770:intron | 30.0% | |
| AAATAGGCTGAAAAAGCTTA+TGG | + | chr6_4:82231731-82231750 | Msa0999770:intron | 30.0% | |
| !!! | AAGCACTTTTAAGACTGTTT+GGG | - | chr6_4:82231785-82231804 | None:intergenic | 30.0% |
| ATACCAAAAGTCTACCATTT+AGG | - | chr6_4:82231847-82231866 | None:intergenic | 30.0% | |
| !!! | ATTTTTTAAGATAGCCCTCT+TGG | + | chr6_4:82231965-82231984 | Msa0999770:intron | 30.0% |
| GATATTATGGTTCAGCAAAA+TGG | + | chr6_4:82232083-82232102 | Msa0999770:intron | 30.0% | |
| AAATTTCAAAAAAGTTGGGC+AGG | - | chr6_4:82232409-82232428 | None:intergenic | 30.0% | |
| CATAGTTTATCACAGAACAA+TGG | + | chr6_4:82232563-82232582 | Msa0999770:intron | 30.0% | |
| TTGTTAACTAGTAGCTATAG+TGG | - | chr6_4:82232620-82232639 | None:intergenic | 30.0% | |
| TATCTATGTTATGTGAACAG+TGG | + | chr6_4:82232655-82232674 | Msa0999770:intron | 30.0% | |
| ACAGTACATAACTTCTACTT+TGG | + | chr6_4:82232787-82232806 | Msa0999770:CDS | 30.0% | |
| ! | ATAACTTCTACTTTGGAGAA+GGG | + | chr6_4:82232794-82232813 | Msa0999770:CDS | 30.0% |
| ! | ATACATAAGATTCACTGACT+TGG | - | chr6_4:82232920-82232939 | None:intergenic | 30.0% |
| GTTTCTAAATCAACAAGTAC+TGG | - | chr6_4:82232989-82233008 | None:intergenic | 30.0% | |
| AGTTTCTCAAGTACTTATGT+CGG | - | chr6_4:82233085-82233104 | None:intergenic | 30.0% | |
| TAAGTACTTGAGAAACTGTT+TGG | + | chr6_4:82233088-82233107 | Msa0999770:intron | 30.0% | |
| AAGTACTTGAGAAACTGTTT+GGG | + | chr6_4:82233089-82233108 | Msa0999770:intron | 30.0% | |
| !!! | TGAACTCACTTTTGACTTAT+GGG | - | chr6_4:82233509-82233528 | None:intergenic | 30.0% |
| !!! | TTGAACTCACTTTTGACTTA+TGG | - | chr6_4:82233510-82233529 | None:intergenic | 30.0% |
| GTCAAAAGTGAGTTCAAAAT+TGG | + | chr6_4:82233513-82233532 | Msa0999770:intron | 30.0% | |
| ATGGAATTTGACAGTAAGAA+TGG | - | chr6_4:82233596-82233615 | None:intergenic | 30.0% | |
| !! | TTTGATGTACTTGTTGTTGT+GGG | - | chr6_4:82233855-82233874 | None:intergenic | 30.0% |
| ATGTAGATACAACATCTAAG+TGG | + | chr6_4:82233889-82233908 | Msa0999770:exon | 30.0% | |
| ! | ATACAACATCTAAGTGGTTT+TGG | + | chr6_4:82233895-82233914 | Msa0999770:exon | 30.0% |
| !! | TACTGGCTTGAGATATATTA+AGG | + | chr6_4:82233960-82233979 | Msa0999770:three_prime_UTR | 30.0% |
| !! | ACTGGCTTGAGATATATTAA+GGG | + | chr6_4:82233961-82233980 | Msa0999770:three_prime_UTR | 30.0% |
| GCTTAGTTATGACAATTAAG+AGG | + | chr6_4:82234006-82234025 | Msa0999770:three_prime_UTR | 30.0% | |
| !! | TTTGTGATCTTGGTGATGAT+GGG | - | chr6_4:82231128-82231147 | None:intergenic | 35.0% |
| !!! | TTTTGTGATCTTGGTGATGA+TGG | - | chr6_4:82231129-82231148 | None:intergenic | 35.0% |
| AGGACTTTGAACGTAATAAG+GGG | - | chr6_4:82231157-82231176 | None:intergenic | 35.0% | |
| GAAGGACTTTGAACGTAATA+AGG | - | chr6_4:82231159-82231178 | None:intergenic | 35.0% | |
| TCATGAGAAGATTCTCTTGA+AGG | - | chr6_4:82231177-82231196 | None:intergenic | 35.0% | |
| TCAAGAGAATCTTCTCATGA+TGG | + | chr6_4:82231177-82231196 | Msa0999770:CDS | 35.0% | |
| TCACCTTCACATCAATCTTA+TGG | + | chr6_4:82231237-82231256 | Msa0999770:CDS | 35.0% | |
| TGACCATAAGATTGATGTGA+AGG | - | chr6_4:82231243-82231262 | None:intergenic | 35.0% | |
| TTGAAGAAGAAGCTCTTGAA+TGG | - | chr6_4:82231266-82231285 | None:intergenic | 35.0% | |
| TCTTCTTCAAGTAGAATCTC+TGG | + | chr6_4:82231276-82231295 | Msa0999770:CDS | 35.0% | |
| GAAAAGTGAATGATAAAGGG+TGG | + | chr6_4:82231334-82231353 | Msa0999770:CDS | 35.0% | |
| GTGATTGAAGAAGAAAATGG+TGG | + | chr6_4:82231369-82231388 | Msa0999770:CDS | 35.0% | |
| GAAGAAGAAAATGGTGGTTA+TGG | + | chr6_4:82231375-82231394 | Msa0999770:CDS | 35.0% | |
| !! | GATTTTGATCGTGATCGAAA+TGG | + | chr6_4:82231399-82231418 | Msa0999770:CDS | 35.0% |
| !! | TCAGTTTTTCATTGCTGTTG+TGG | + | chr6_4:82231437-82231456 | Msa0999770:intron | 35.0% |
| !! | CAGTTTTTCATTGCTGTTGT+GGG | + | chr6_4:82231438-82231457 | Msa0999770:intron | 35.0% |
| !!! | CAAGCACTTTTAAGACTGTT+TGG | - | chr6_4:82231786-82231805 | None:intergenic | 35.0% |
| TCAATCCATACAGTCCTAAA+TGG | + | chr6_4:82231830-82231849 | Msa0999770:intron | 35.0% | |
| ! | AGTCCTAAATGGTAGACTTT+TGG | + | chr6_4:82231841-82231860 | Msa0999770:intron | 35.0% |
| TGTTCTGTTTAGTGCATACA+TGG | + | chr6_4:82232148-82232167 | Msa0999770:intron | 35.0% | |
| ! | TTAGTGCATACATGGATTGA+CGG | + | chr6_4:82232156-82232175 | Msa0999770:intron | 35.0% |
| CGTGAAAAAAAGTTGCACTT+TGG | + | chr6_4:82232198-82232217 | Msa0999770:intron | 35.0% | |
| CAATCCAAACATGCACTTAT+TGG | + | chr6_4:82232269-82232288 | Msa0999770:intron | 35.0% | |
| TACACCAATAAGTGCATGTT+TGG | - | chr6_4:82232276-82232295 | None:intergenic | 35.0% | |
| TACCACTATAAGTCTACACA+AGG | - | chr6_4:82232312-82232331 | None:intergenic | 35.0% | |
| CTACAACTAGCACGAAAAAA+TGG | - | chr6_4:82232443-82232462 | None:intergenic | 35.0% | |
| GATTACAATCTTGCCAATCA+CGG | + | chr6_4:82232462-82232481 | Msa0999770:intron | 35.0% | |
| ATTACAATCTTGCCAATCAC+GGG | + | chr6_4:82232463-82232482 | Msa0999770:intron | 35.0% | |
| TAGCTACTAGTTAACAACAC+TGG | + | chr6_4:82232623-82232642 | Msa0999770:intron | 35.0% | |
| ! | CATAACTTCTACTTTGGAGA+AGG | + | chr6_4:82232793-82232812 | Msa0999770:CDS | 35.0% |
| TTCACTGTAAGCATCTTAGT+TGG | - | chr6_4:82232838-82232857 | None:intergenic | 35.0% | |
| !!! | CATAACCCTGCAACTTTTTT+CGG | + | chr6_4:82232880-82232899 | Msa0999770:CDS | 35.0% |
| AAATGCCGAAAAAAGTTGCA+GGG | - | chr6_4:82232888-82232907 | None:intergenic | 35.0% | |
| TAAATGCCGAAAAAAGTTGC+AGG | - | chr6_4:82232889-82232908 | None:intergenic | 35.0% | |
| ATAAGCTATATAAGCTGTCC+TGG | - | chr6_4:82233137-82233156 | None:intergenic | 35.0% | |
| ATTAAGCTGTTCATCCAAAC+AGG | + | chr6_4:82233256-82233275 | Msa0999770:intron | 35.0% | |
| !! | AAAAAAGTTCTAGGCCTGTT+TGG | - | chr6_4:82233273-82233292 | None:intergenic | 35.0% |
| !! | AGTTCAAAATTGGCCTTTGA+AGG | + | chr6_4:82233523-82233542 | Msa0999770:intron | 35.0% |
| GTATATTGACAGACACTGTT+CGG | - | chr6_4:82233661-82233680 | None:intergenic | 35.0% | |
| ACAGTGTCTGTCAATATACA+AGG | + | chr6_4:82233662-82233681 | Msa0999770:CDS | 35.0% | |
| TGTCAATATACAAGGAAGCA+AGG | + | chr6_4:82233670-82233689 | Msa0999770:CDS | 35.0% | |
| !! | TTGATGTACTTGTTGTTGTG+GGG | - | chr6_4:82233854-82233873 | None:intergenic | 35.0% |
| !! | GTTTGATGTACTTGTTGTTG+TGG | - | chr6_4:82233856-82233875 | None:intergenic | 35.0% |
| AATGAACTGAAATAGCTCAC+AGG | - | chr6_4:82233939-82233958 | None:intergenic | 35.0% | |
| ! | GCTATTTCAGTTCATTCTAC+TGG | + | chr6_4:82233943-82233962 | Msa0999770:three_prime_UTR | 35.0% |
| !! | TGACAATTAAGAGGGTGTTT+AGG | + | chr6_4:82234015-82234034 | Msa0999770:three_prime_UTR | 35.0% |
| !!! | GGGGTTTGTTTTTGTGATCT+TGG | - | chr6_4:82231138-82231157 | None:intergenic | 40.0% |
| AACAATGCAACCAAGTCCAA+TGG | + | chr6_4:82231212-82231231 | Msa0999770:CDS | 40.0% | |
| TGATGTGAAGGTGAATCCAT+TGG | - | chr6_4:82231231-82231250 | None:intergenic | 40.0% | |
| TCTTCAAGTAGAATCTCTGG+TGG | + | chr6_4:82231279-82231298 | Msa0999770:CDS | 40.0% | |
| GTGAATGATAAAGGGTGGAT+TGG | + | chr6_4:82231339-82231358 | Msa0999770:CDS | 40.0% | |
| !! | TAAAGGGTGGATTGGATCTA+AGG | + | chr6_4:82231347-82231366 | Msa0999770:CDS | 40.0% |
| !! | TTGCTGTTGTGGGTTTGTTT+TGG | + | chr6_4:82231448-82231467 | Msa0999770:intron | 40.0% |
| CACAATTGTGAAGCAATGCA+AGG | - | chr6_4:82231555-82231574 | None:intergenic | 40.0% | |
| AGACTGTTTGGGAAAGCTTA+TGG | - | chr6_4:82231774-82231793 | None:intergenic | 40.0% | |
| ! | GTCTACCATTTAGGACTGTA+TGG | - | chr6_4:82231838-82231857 | None:intergenic | 40.0% |
| TAAGATAGCCCTCTTGGATT+TGG | + | chr6_4:82231971-82231990 | Msa0999770:intron | 40.0% | |
| ACATCATGCCAAATCCAAGA+GGG | - | chr6_4:82231982-82232001 | None:intergenic | 40.0% | |
| AACATCATGCCAAATCCAAG+AGG | - | chr6_4:82231983-82232002 | None:intergenic | 40.0% | |
| ! | TTTGGCATGATGTTTGAGAC+AGG | + | chr6_4:82231989-82232008 | Msa0999770:intron | 40.0% |
| ! | TACATGGATTGACGGTGATT+TGG | + | chr6_4:82232164-82232183 | Msa0999770:intron | 40.0% |
| GTTTGGATTGACTGAGAGTT+GGG | - | chr6_4:82232259-82232278 | None:intergenic | 40.0% | |
| TGTTTGGATTGACTGAGAGT+TGG | - | chr6_4:82232260-82232279 | None:intergenic | 40.0% | |
| TGCCTTGTGTAGACTTATAG+TGG | + | chr6_4:82232307-82232326 | Msa0999770:intron | 40.0% | |
| TTTGCATAACCTGCTTCATG+AGG | + | chr6_4:82232361-82232380 | Msa0999770:intron | 40.0% | |
| TTGCATAACCTGCTTCATGA+GGG | + | chr6_4:82232362-82232381 | Msa0999770:intron | 40.0% | |
| ACTAGCACGAAAAAATGGCA+GGG | - | chr6_4:82232438-82232457 | None:intergenic | 40.0% | |
| AACTAGCACGAAAAAATGGC+AGG | - | chr6_4:82232439-82232458 | None:intergenic | 40.0% | |
| TGTTAGAATACTTACCTCGC+CGG | - | chr6_4:82232962-82232981 | None:intergenic | 40.0% | |
| !!! | CAGGCCTAGAACTTTTTTGA+CGG | + | chr6_4:82233275-82233294 | Msa0999770:intron | 40.0% |
| CTGTCCGTCAAAAAAGTTCT+AGG | - | chr6_4:82233282-82233301 | None:intergenic | 40.0% | |
| !! | AAAATTGGCCTTTGAAGGAG+TGG | + | chr6_4:82233528-82233547 | Msa0999770:intron | 40.0% |
| CATTTAAGCCACTCCTTCAA+AGG | - | chr6_4:82233539-82233558 | None:intergenic | 40.0% | |
| TTTCTTCAACTGCAGCAACA+TGG | - | chr6_4:82233615-82233634 | None:intergenic | 40.0% | |
| !! | TGATGTACTTGTTGTTGTGG+GGG | - | chr6_4:82233853-82233872 | None:intergenic | 40.0% |
| GAAGGTGAATCCATTGGACT+TGG | - | chr6_4:82231225-82231244 | None:intergenic | 45.0% | |
| GTGATCGAAATGGAGTTTCG+AGG | + | chr6_4:82231409-82231428 | Msa0999770:CDS | 45.0% | |
| ATCGAAATGGAGTTTCGAGG+AGG | + | chr6_4:82231412-82231431 | Msa0999770:CDS | 45.0% | |
| TCGAAATGGAGTTTCGAGGA+GGG | + | chr6_4:82231413-82231432 | Msa0999770:CDS | 45.0% | |
| TATACCTTGACACTGAGCTG+AGG | - | chr6_4:82231524-82231543 | None:intergenic | 45.0% | |
| !! | TGCACTTTGGAGCTTCAAAG+AGG | + | chr6_4:82232211-82232230 | Msa0999770:intron | 45.0% |
| !!! | CTATTTTTGCGACCCGTGAT+TGG | - | chr6_4:82232478-82232497 | None:intergenic | 45.0% |
| TCTGATCTTACAGTTGCGAC+CGG | + | chr6_4:82232940-82232959 | Msa0999770:CDS | 45.0% | |
| CTTATGTCTGTAAGCTCACC+AGG | + | chr6_4:82233116-82233135 | Msa0999770:intron | 45.0% | |
| TATTGACAGACACTGTTCGG+CGG | - | chr6_4:82233658-82233677 | None:intergenic | 45.0% | |
| GGAAGCAAGGTTCCATTGTA+TGG | + | chr6_4:82233683-82233702 | Msa0999770:CDS | 45.0% | |
| !! | GTCTTTGAAGTTAAGTCGCG+CGG | + | chr6_4:82233761-82233780 | Msa0999770:CDS | 45.0% |
| CGGAAATGTTGTAGGCAAGT+TGG | + | chr6_4:82233781-82233800 | Msa0999770:CDS | 45.0% | |
| !! | ATGTTGTAGGCAAGTTGGTG+AGG | + | chr6_4:82233786-82233805 | Msa0999770:CDS | 45.0% |
| CAAACCTCAGCTCAGTGTCA+AGG | + | chr6_4:82231517-82231536 | Msa0999770:intron | 50.0% | |
| ATACAACGCCCTCATGAAGC+AGG | - | chr6_4:82232373-82232392 | None:intergenic | 50.0% | |
| !! | TGCTTCATGAGGGCGTTGTA+TGG | + | chr6_4:82232372-82232391 | Msa0999770:intron | 50.0% |
| AAGGTTCCATTGTATGGCGC+TGG | + | chr6_4:82233689-82233708 | Msa0999770:CDS | 50.0% | |
| TGGTGCAGATGTTGCTAGCT+CGG | + | chr6_4:82233709-82233728 | Msa0999770:CDS | 50.0% | |
| ! | GTTGCTAGCTCGGTGAACAA+CGG | + | chr6_4:82233719-82233738 | Msa0999770:CDS | 50.0% |
| AAGTCGCGCGGAAATGTTGT+AGG | + | chr6_4:82233773-82233792 | Msa0999770:CDS | 50.0% | |
| !! | CTTGTTGTTGTGGGGGTCAA+CGG | - | chr6_4:82233846-82233865 | None:intergenic | 50.0% |
| TCTGCACCAGCGCCATACAA+TGG | - | chr6_4:82233698-82233717 | None:intergenic | 55.0% | |
| GGAGAAGGGTCAGACGTCAC+TGG | + | chr6_4:82232808-82232827 | Msa0999770:CDS | 60.0% | |
| TCTTACAGTTGCGACCGGCG+AGG | + | chr6_4:82232945-82232964 | Msa0999770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 82231087 | 82234189 | 82231087 | ID=Msa0999770;Name=Msa0999770 |
| chr6_4 | mRNA | 82231087 | 82234189 | 82231087 | ID=Msa0999770-mRNA-1;Parent=Msa0999770;Name=Msa0999770-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.5|0.66|1|1|1|3|282|278 |
| chr6_4 | exon | 82231087 | 82231455 | 82231087 | ID=Msa0999770-mRNA-1:exon:15771;Parent=Msa0999770-mRNA-1 |
| chr6_4 | exon | 82232781 | 82232966 | 82232781 | ID=Msa0999770-mRNA-1:exon:15772;Parent=Msa0999770-mRNA-1 |
| chr6_4 | exon | 82233626 | 82234189 | 82233626 | ID=Msa0999770-mRNA-1:exon:15773;Parent=Msa0999770-mRNA-1 |
| chr6_4 | CDS | 82231087 | 82231455 | 82231087 | ID=Msa0999770-mRNA-1:cds;Parent=Msa0999770-mRNA-1 |
| chr6_4 | CDS | 82232781 | 82232966 | 82232781 | ID=Msa0999770-mRNA-1:cds;Parent=Msa0999770-mRNA-1 |
| chr6_4 | CDS | 82233626 | 82233907 | 82233626 | ID=Msa0999770-mRNA-1:cds;Parent=Msa0999770-mRNA-1 |
| chr6_4 | three_prime_UTR | 82233908 | 82234189 | 82233908 | ID=Msa0999770-mRNA-1:three_prime_utr;Parent=Msa0999770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
