Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000010 | XP_013453113.1 | 93.093 | 333 | 23 | 0 | 230 | 562 | 1 | 333 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000010 | sp|Q9ZSY8|IAA27_ARATH | 57.258 | 248 | 72 | 9 | 4 | 223 | 26 | 267 | 1.49e-70 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000010 | A0A072UCF6 | 93.093 | 333 | 23 | 0 | 230 | 562 | 1 | 333 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1000010 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1000010 | Msa1434220 | 0.802417 | 5.666486e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000010 | MtrunA17_Chr6g0486091 | 93.093 | 333 | 23 | 0 | 230 | 562 | 1 | 333 | 0.0 | 654 |
| Msa1000010 | MtrunA17_Chr6g0486101 | 93.417 | 319 | 21 | 0 | 244 | 562 | 14 | 332 | 0.0 | 631 |
| Msa1000010 | MtrunA17_Chr6g0486081 | 87.654 | 324 | 35 | 1 | 244 | 562 | 13 | 336 | 0.0 | 591 |
| Msa1000010 | MtrunA17_Chr6g0486121 | 89.686 | 223 | 16 | 2 | 1 | 223 | 1 | 216 | 7.41e-140 | 405 |
| Msa1000010 | MtrunA17_Chr3g0140061 | 51.429 | 315 | 139 | 4 | 260 | 562 | 38 | 350 | 8.43e-115 | 345 |
| Msa1000010 | MtrunA17_Chr3g0140051 | 51.429 | 315 | 139 | 4 | 260 | 562 | 38 | 350 | 1.17e-114 | 344 |
| Msa1000010 | MtrunA17_Chr8g0390281 | 58.776 | 245 | 54 | 7 | 14 | 223 | 23 | 255 | 4.85e-78 | 248 |
| Msa1000010 | MtrunA17_Chr8g0366881 | 51.984 | 252 | 86 | 6 | 7 | 223 | 59 | 310 | 9.97e-68 | 223 |
| Msa1000010 | MtrunA17_Chr5g0411501 | 48.881 | 268 | 89 | 9 | 15 | 235 | 51 | 317 | 1.54e-66 | 219 |
| Msa1000010 | MtrunA17_Chr2g0331411 | 45.172 | 290 | 94 | 8 | 10 | 235 | 20 | 308 | 1.04e-61 | 206 |
| Msa1000010 | MtrunA17_Chr5g0428141 | 47.876 | 259 | 87 | 10 | 7 | 223 | 57 | 309 | 1.52e-55 | 191 |
| Msa1000010 | MtrunA17_Chr1g0187921 | 45.205 | 219 | 86 | 6 | 13 | 223 | 6 | 198 | 8.46e-45 | 158 |
| Msa1000010 | MtrunA17_Chr1g0190711 | 39.850 | 266 | 119 | 9 | 15 | 267 | 15 | 252 | 3.81e-41 | 149 |
| Msa1000010 | MtrunA17_Chr7g0260641 | 56.303 | 119 | 50 | 1 | 105 | 223 | 96 | 212 | 1.76e-35 | 133 |
| Msa1000010 | MtrunA17_Chr1g0184791 | 56.098 | 123 | 49 | 2 | 105 | 223 | 86 | 207 | 3.41e-35 | 132 |
| Msa1000010 | MtrunA17_Chr1g0184801 | 35.294 | 238 | 108 | 7 | 15 | 252 | 12 | 203 | 8.54e-33 | 124 |
| Msa1000010 | MtrunA17_Chr7g0260621 | 39.713 | 209 | 82 | 6 | 15 | 223 | 11 | 175 | 8.71e-33 | 124 |
| Msa1000010 | MtrunA17_Chr1g0166011 | 38.389 | 211 | 73 | 8 | 15 | 223 | 1 | 156 | 1.77e-31 | 120 |
| Msa1000010 | MtrunA17_Chr1g0187961 | 38.863 | 211 | 62 | 6 | 13 | 223 | 9 | 152 | 7.53e-31 | 118 |
| Msa1000010 | MtrunA17_Chr2g0330951 | 33.730 | 252 | 134 | 10 | 21 | 250 | 18 | 258 | 4.58e-21 | 93.2 |
| Msa1000010 | MtrunA17_Chr8g0340731 | 30.000 | 250 | 126 | 7 | 9 | 223 | 3 | 238 | 5.17e-19 | 87.4 |
| Msa1000010 | MtrunA17_Chr1g0183251 | 38.255 | 149 | 59 | 5 | 108 | 223 | 82 | 230 | 3.25e-18 | 85.1 |
| Msa1000010 | MtrunA17_Chr4g0004181 | 44.915 | 118 | 36 | 3 | 106 | 223 | 52 | 140 | 6.19e-17 | 79.0 |
| Msa1000010 | MtrunA17_Chr2g0332141 | 49.412 | 85 | 33 | 3 | 141 | 223 | 6 | 82 | 7.43e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000010 | AT4G28940.1 | 57.018 | 342 | 131 | 3 | 231 | 562 | 3 | 338 | 1.85e-140 | 410 |
| Msa1000010 | AT4G28940.2 | 60.714 | 252 | 84 | 2 | 320 | 562 | 1 | 246 | 9.41e-109 | 326 |
| Msa1000010 | AT4G29080.1 | 57.258 | 248 | 72 | 9 | 4 | 223 | 26 | 267 | 1.51e-71 | 231 |
| Msa1000010 | AT4G24350.1 | 39.739 | 307 | 177 | 4 | 257 | 562 | 34 | 333 | 2.80e-67 | 221 |
| Msa1000010 | AT4G24340.1 | 39.088 | 307 | 176 | 4 | 257 | 562 | 39 | 335 | 7.72e-65 | 215 |
| Msa1000010 | AT2G22670.3 | 48.729 | 236 | 93 | 6 | 15 | 223 | 47 | 281 | 1.05e-59 | 201 |
| Msa1000010 | AT2G22670.1 | 48.729 | 236 | 93 | 6 | 15 | 223 | 47 | 281 | 1.05e-59 | 201 |
| Msa1000010 | AT2G22670.5 | 48.729 | 236 | 93 | 6 | 15 | 223 | 47 | 281 | 1.24e-59 | 201 |
| Msa1000010 | AT2G22670.2 | 48.729 | 236 | 93 | 6 | 15 | 223 | 47 | 281 | 1.24e-59 | 201 |
| Msa1000010 | AT2G22670.4 | 48.729 | 236 | 93 | 6 | 15 | 223 | 64 | 298 | 1.67e-59 | 201 |
| Msa1000010 | AT4G24350.2 | 38.783 | 263 | 155 | 3 | 257 | 518 | 34 | 291 | 6.06e-56 | 190 |
| Msa1000010 | AT5G65670.2 | 46.218 | 238 | 99 | 3 | 15 | 223 | 61 | 298 | 1.82e-54 | 187 |
| Msa1000010 | AT5G65670.1 | 46.218 | 238 | 99 | 3 | 15 | 223 | 61 | 298 | 1.86e-54 | 187 |
| Msa1000010 | AT4G24350.3 | 38.428 | 229 | 133 | 4 | 335 | 562 | 1 | 222 | 3.93e-45 | 159 |
| Msa1000010 | AT4G14550.3 | 44.860 | 214 | 89 | 7 | 15 | 223 | 1 | 190 | 6.32e-45 | 157 |
| Msa1000010 | AT4G14550.1 | 44.860 | 214 | 89 | 7 | 15 | 223 | 1 | 190 | 2.47e-44 | 157 |
| Msa1000010 | AT4G14550.2 | 44.393 | 214 | 90 | 6 | 15 | 223 | 1 | 190 | 4.25e-44 | 157 |
| Msa1000010 | AT3G04730.1 | 43.304 | 224 | 85 | 7 | 15 | 223 | 2 | 198 | 1.48e-43 | 155 |
| Msa1000010 | AT3G23050.2 | 44.144 | 222 | 88 | 7 | 15 | 223 | 6 | 204 | 3.34e-43 | 153 |
| Msa1000010 | AT3G23050.1 | 44.144 | 222 | 88 | 7 | 15 | 223 | 6 | 204 | 9.69e-43 | 153 |
| Msa1000010 | AT1G04250.1 | 40.092 | 217 | 90 | 8 | 15 | 223 | 7 | 191 | 1.15e-38 | 142 |
| Msa1000010 | AT4G24350.4 | 37.056 | 197 | 118 | 3 | 323 | 518 | 6 | 197 | 7.98e-37 | 135 |
| Msa1000010 | AT1G04240.1 | 36.975 | 238 | 95 | 9 | 15 | 252 | 5 | 187 | 4.23e-31 | 120 |
| Msa1000010 | AT1G04240.2 | 36.975 | 238 | 95 | 9 | 15 | 252 | 105 | 287 | 2.74e-30 | 120 |
| Msa1000010 | AT4G14550.4 | 41.279 | 172 | 74 | 5 | 15 | 181 | 1 | 150 | 2.71e-28 | 112 |
| Msa1000010 | AT3G23050.3 | 40.437 | 183 | 75 | 6 | 15 | 184 | 6 | 167 | 1.45e-27 | 109 |
| Msa1000010 | AT5G43700.1 | 33.193 | 238 | 94 | 7 | 15 | 252 | 11 | 183 | 1.76e-27 | 109 |
| Msa1000010 | AT3G23030.1 | 37.441 | 211 | 59 | 7 | 13 | 223 | 7 | 144 | 3.64e-25 | 102 |
| Msa1000010 | AT1G52830.1 | 35.211 | 213 | 82 | 9 | 11 | 223 | 2 | 158 | 1.41e-24 | 101 |
| Msa1000010 | AT3G23030.2 | 37.441 | 211 | 59 | 7 | 13 | 223 | 94 | 231 | 2.42e-24 | 102 |
| Msa1000010 | AT4G14560.1 | 38.389 | 211 | 56 | 7 | 13 | 223 | 5 | 141 | 8.60e-24 | 98.6 |
| Msa1000010 | AT3G15540.1 | 36.493 | 211 | 80 | 8 | 14 | 223 | 5 | 162 | 8.64e-23 | 96.7 |
| Msa1000010 | AT1G15580.1 | 29.412 | 238 | 86 | 6 | 12 | 248 | 5 | 161 | 6.48e-21 | 90.5 |
| Msa1000010 | AT3G16500.2 | 32.432 | 259 | 131 | 10 | 7 | 249 | 25 | 255 | 1.15e-20 | 92.4 |
| Msa1000010 | AT3G16500.1 | 32.432 | 259 | 131 | 10 | 7 | 249 | 25 | 255 | 1.30e-20 | 92.4 |
| Msa1000010 | AT4G28640.1 | 38.621 | 145 | 67 | 5 | 96 | 223 | 76 | 215 | 6.66e-20 | 89.7 |
| Msa1000010 | AT4G28640.3 | 38.621 | 145 | 67 | 5 | 96 | 223 | 76 | 215 | 8.37e-20 | 89.7 |
| Msa1000010 | AT4G28640.2 | 38.621 | 145 | 67 | 5 | 96 | 223 | 76 | 215 | 2.80e-19 | 89.4 |
| Msa1000010 | AT2G33310.3 | 37.870 | 169 | 76 | 6 | 108 | 255 | 75 | 235 | 5.61e-19 | 87.0 |
| Msa1000010 | AT2G33310.1 | 37.870 | 169 | 76 | 6 | 108 | 255 | 75 | 235 | 5.61e-19 | 87.0 |
| Msa1000010 | AT2G33310.2 | 37.870 | 169 | 76 | 6 | 108 | 255 | 76 | 236 | 6.17e-19 | 87.0 |
| Msa1000010 | AT1G04100.1 | 32.571 | 175 | 81 | 7 | 105 | 249 | 90 | 257 | 6.44e-18 | 84.3 |
| Msa1000010 | AT1G04550.2 | 35.185 | 162 | 70 | 7 | 108 | 246 | 69 | 218 | 8.13e-17 | 80.5 |
| Msa1000010 | AT1G51950.1 | 34.225 | 187 | 94 | 6 | 97 | 259 | 85 | 266 | 2.93e-16 | 79.7 |
| Msa1000010 | AT3G17600.1 | 36.364 | 121 | 53 | 4 | 103 | 223 | 39 | 135 | 1.43e-12 | 66.2 |
| Msa1000010 | AT5G25890.1 | 33.043 | 115 | 55 | 3 | 109 | 223 | 49 | 141 | 2.33e-11 | 63.2 |
Find 112 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGCTTATTCATTAAAA+AGG | 0.141551 | 6_4:+82653861 | None:intergenic |
| TAAACAAAGTAAGCAATAAT+TGG | 0.152148 | 6_4:+82655835 | None:intergenic |
| TACATAAAGGCATCCAAATT+TGG | 0.170065 | 6_4:+82658154 | None:intergenic |
| TACTCTTTATGCATGCTTAA+TGG | 0.190958 | 6_4:-82659313 | Msa1000010:CDS |
| TCTCCAAGAAAGTTGATTAA+TGG | 0.195648 | 6_4:+82657096 | None:intergenic |
| AGATCCACTTTCCTCAAGTA+TGG | 0.227669 | 6_4:+82658110 | None:intergenic |
| GAATTGTCACATCTCCAATT+TGG | 0.244108 | 6_4:+82655760 | None:intergenic |
| TTGATGGAACTCCTGAAATT+TGG | 0.261576 | 6_4:-82654986 | Msa1000010:CDS |
| GTGCCATTAATCAACTTTCT+TGG | 0.268654 | 6_4:-82657099 | Msa1000010:CDS |
| GGCCACCAATCCGTTCTTTC+AGG | 0.268848 | 6_4:-82658229 | Msa1000010:CDS |
| AAAGCAGGCTGCCAAATTTC+AGG | 0.270584 | 6_4:+82654975 | None:intergenic |
| CTTACTTTGTTTAATATAGA+AGG | 0.275450 | 6_4:-82655825 | Msa1000010:CDS |
| CTCGCCACAATAGGCTTTCT+TGG | 0.284730 | 6_4:+82654171 | None:intergenic |
| TGGCGAATTGGAAAAGAAAA+AGG | 0.293433 | 6_4:-82655998 | Msa1000010:CDS |
| GATGATGTAGAAGCCAAATT+TGG | 0.307716 | 6_4:-82658167 | Msa1000010:CDS |
| TGGAGATTTCAGAACAGAAT+TGG | 0.318936 | 6_4:-82655111 | Msa1000010:CDS |
| ATGAAAAGTGTAGGTCAATT+TGG | 0.319033 | 6_4:-82657593 | Msa1000010:intron |
| TTTCCTTACTTTGACTTTGC+TGG | 0.325088 | 6_4:-82656965 | Msa1000010:intron |
| ATAGAAGGAGTTCTACATTA+TGG | 0.328862 | 6_4:-82655810 | Msa1000010:CDS |
| TTAAATTCTAGATTCCAAAT+TGG | 0.338067 | 6_4:-82655774 | Msa1000010:CDS |
| AAAGCTACTAAATTATAATA+AGG | 0.340766 | 6_4:+82653888 | None:intergenic |
| AGGAGAATGGAGTTTCTTCT+AGG | 0.358920 | 6_4:-82657169 | Msa1000010:CDS |
| AATAACAAAGGACCATATAT+TGG | 0.376340 | 6_4:-82657058 | Msa1000010:CDS |
| TTTGTGTGAAAGTAGATTGA+TGG | 0.380197 | 6_4:-82657543 | Msa1000010:CDS |
| GTTCTACATTATGGAATTGC+AGG | 0.380755 | 6_4:-82655801 | Msa1000010:CDS |
| TAAATCAGACAATGCTCTAA+TGG | 0.381030 | 6_4:+82654002 | None:intergenic |
| CCTTCACAACAGAACCTTGT+TGG | 0.383043 | 6_4:+82659221 | None:intergenic |
| AGTTGTGATGATGGTATTAC+TGG | 0.388346 | 6_4:-82657143 | Msa1000010:CDS |
| ACCACTTGAAAGAGAACAAT+TGG | 0.393567 | 6_4:-82657192 | Msa1000010:intron |
| AAAATCTGTTGAACAAGGTT+TGG | 0.395584 | 6_4:-82655034 | Msa1000010:CDS |
| AAGAAGAAGTCTCAGATATA+TGG | 0.397635 | 6_4:-82659163 | Msa1000010:CDS |
| GGCACAACTATACCAATATA+TGG | 0.398193 | 6_4:+82657046 | None:intergenic |
| CACAACAGAACCTTGTTGGT+TGG | 0.401071 | 6_4:+82659225 | None:intergenic |
| ATCACCATCTTTATCTTCAT+AGG | 0.403740 | 6_4:+82657490 | None:intergenic |
| AAGGTTATTGTTGTAATGAC+TGG | 0.405173 | 6_4:-82655979 | Msa1000010:CDS |
| TGTGACAATTCCACAGTATT+GGG | 0.406133 | 6_4:-82655748 | Msa1000010:CDS |
| ATTTCAGGAGTTCCATCAAC+AGG | 0.406190 | 6_4:+82654990 | None:intergenic |
| TTCTTTACTCTCGCCACAAT+AGG | 0.415417 | 6_4:+82654162 | None:intergenic |
| TGATCTAGGGAACAAATTGT+AGG | 0.417413 | 6_4:-82658254 | Msa1000010:intron |
| GGAGATTTCAGAACAGAATT+GGG | 0.417829 | 6_4:-82655110 | Msa1000010:CDS |
| GGATTCAACTCAAAGGCATT+TGG | 0.420342 | 6_4:+82657025 | None:intergenic |
| TTTCTTCAAACCAATTTCAA+TGG | 0.423741 | 6_4:+82659255 | None:intergenic |
| TTCAGTTTACAAAACTACTT+TGG | 0.425977 | 6_4:+82659501 | None:intergenic |
| GGAAGTAGCATCAATGCTTA+TGG | 0.430046 | 6_4:-82657121 | Msa1000010:CDS |
| CTCTCTGGTGATTCAGAACC+AGG | 0.434581 | 6_4:+82659367 | None:intergenic |
| GATTTAATTGAGCAGAGGTT+TGG | 0.438058 | 6_4:-82655143 | Msa1000010:intron |
| AGATTGATGGATCTCCTTCA+TGG | 0.440946 | 6_4:-82657530 | Msa1000010:CDS |
| AAACAAAGTAAGCAATAATT+GGG | 0.441098 | 6_4:+82655836 | None:intergenic |
| TGTAATGACTGGAGAGAGTA+TGG | 0.441584 | 6_4:-82655968 | Msa1000010:intron |
| GTAGGTCAATTTGGCTCTCA+TGG | 0.457514 | 6_4:-82657584 | Msa1000010:intron |
| AGAGAACAATTGGAGGAGAA+TGG | 0.458714 | 6_4:-82657182 | Msa1000010:CDS |
| CACAGGACTTTGGCATTGGC+AGG | 0.468970 | 6_4:-82655721 | Msa1000010:intron |
| AGAGCATTGTCTGATTTAGC+TGG | 0.470402 | 6_4:-82653997 | Msa1000010:CDS |
| GACTTCTTCTTCTCATTCAA+AGG | 0.481249 | 6_4:+82659175 | None:intergenic |
| TTCTTTCAGGAAGAATTCAA+TGG | 0.488415 | 6_4:-82658216 | Msa1000010:CDS |
| AGAAGATCATTATCTCTCTC+TGG | 0.489102 | 6_4:+82659352 | None:intergenic |
| TAAAGTTTCCACTACTACAA+TGG | 0.489709 | 6_4:-82659464 | Msa1000010:exon |
| ATGTGACAATTCCACAGTAT+TGG | 0.489719 | 6_4:-82655749 | Msa1000010:CDS |
| ATGAAGATAAAGATGGTGAT+TGG | 0.490100 | 6_4:-82657487 | Msa1000010:CDS |
| ATTGGGCACACACAGGACTT+TGG | 0.492714 | 6_4:-82655731 | Msa1000010:CDS |
| CAGAGGTTTGGTGAAGACAT+TGG | 0.496179 | 6_4:-82655131 | Msa1000010:CDS |
| TATGTAAAAGTTAGCATGGA+TGG | 0.496315 | 6_4:-82658137 | Msa1000010:CDS |
| TTACCAGCAAAGTCAAAGTA+AGG | 0.499782 | 6_4:+82656962 | None:intergenic |
| TCTAGGTGTAGTTGTGATGA+TGG | 0.507012 | 6_4:-82657152 | Msa1000010:CDS |
| GAGTTAAGACTTGGTTTACC+TGG | 0.509603 | 6_4:-82659385 | Msa1000010:CDS |
| TTGTCTGATTTAGCTGGAGG+AGG | 0.516673 | 6_4:-82653991 | Msa1000010:CDS |
| AAGCTGGATGATTGAAGAAG+AGG | 0.517452 | 6_4:+82657004 | None:intergenic |
| TTGAATTCTTCCTGAAAGAA+CGG | 0.519997 | 6_4:+82658219 | None:intergenic |
| AGAACTTTCCATTGTAGTAG+TGG | 0.527264 | 6_4:+82659456 | None:intergenic |
| GATCCACTTTCCTCAAGTAT+GGG | 0.530733 | 6_4:+82658111 | None:intergenic |
| TTCCTGAAAGAACGGATTGG+TGG | 0.533390 | 6_4:+82658227 | None:intergenic |
| GCAGCACTTTCCATGTCTGT+TGG | 0.535004 | 6_4:+82654066 | None:intergenic |
| CACACACAGGACTTTGGCAT+TGG | 0.539237 | 6_4:-82655725 | Msa1000010:CDS |
| CTTGTTATGAGGAACAAAGC+TGG | 0.546633 | 6_4:+82656988 | None:intergenic |
| ATATTGTCATCTCCTCTACT+AGG | 0.547007 | 6_4:-82653728 | None:intergenic |
| AATAGATACTTCATTGCTCA+AGG | 0.548418 | 6_4:+82653963 | None:intergenic |
| TGAAATTGCAAGAAAGCTCA+AGG | 0.549984 | 6_4:-82654925 | Msa1000010:intron |
| AAGGCTACTGAGTTAAGACT+TGG | 0.551451 | 6_4:-82659394 | Msa1000010:CDS |
| CCTTTATGTAAAAGTTAGCA+TGG | 0.552884 | 6_4:-82658141 | Msa1000010:CDS |
| AAGTAAGGAAACTTGTTATG+AGG | 0.554803 | 6_4:+82656977 | None:intergenic |
| TTGTGGCGAGAGTAAAGAAA+GGG | 0.561851 | 6_4:-82654158 | Msa1000010:CDS |
| CTTGCCAAGAAAGCCTATTG+TGG | 0.563408 | 6_4:-82654175 | Msa1000010:CDS |
| TTCTTCCTGAAAGAACGGAT+TGG | 0.577749 | 6_4:+82658224 | None:intergenic |
| CTCACCTATGAAGATAAAGA+TGG | 0.579438 | 6_4:-82657494 | Msa1000010:CDS |
| TGCCCCATACTTGAGGAAAG+TGG | 0.579458 | 6_4:-82658114 | Msa1000010:CDS |
| CCAACAAGGTTCTGTTGTGA+AGG | 0.586707 | 6_4:-82659221 | Msa1000010:CDS |
| CACAAAACATTCCAAATCAG+AGG | 0.590274 | 6_4:-82655057 | Msa1000010:CDS |
| ATTGTGGCGAGAGTAAAGAA+AGG | 0.591037 | 6_4:-82654159 | Msa1000010:CDS |
| ACTTGAAAGAGAACAATTGG+AGG | 0.592384 | 6_4:-82657189 | Msa1000010:intron |
| TTTGTTGTCAACAAACACAT+TGG | 0.593091 | 6_4:+82654128 | None:intergenic |
| AAGAAGAGGATTCAACTCAA+AGG | 0.600297 | 6_4:+82657018 | None:intergenic |
| GTCTTAACTCAGTAGCCTTG+AGG | 0.600451 | 6_4:+82659398 | None:intergenic |
| GATGGTGATTGGATGCTAGT+TGG | 0.601437 | 6_4:-82657476 | Msa1000010:intron |
| TAAGCAAGGGTCGTTATGAG+AGG | 0.602738 | 6_4:-82653848 | Msa1000010:three_prime_UTR |
| CATCTTTATCTTCATAGGTG+AGG | 0.607712 | 6_4:+82657495 | None:intergenic |
| AATGCTCTAATGGCAATGAA+AGG | 0.608969 | 6_4:+82654012 | None:intergenic |
| AGAGGAAAATCTGTTGAACA+AGG | 0.609039 | 6_4:-82655039 | Msa1000010:CDS |
| TGATGCTACTCCAACAGACA+TGG | 0.610339 | 6_4:-82654076 | Msa1000010:CDS |
| TAACAATGGCTTGAACCTCA+AGG | 0.615787 | 6_4:-82659413 | Msa1000010:CDS |
| GGACATATTCTGAACCATGA+AGG | 0.615918 | 6_4:+82657516 | None:intergenic |
| ATTGAAAATATCAATAACAA+AGG | 0.616117 | 6_4:-82657070 | Msa1000010:CDS |
| GCATTGTCTGATTTAGCTGG+AGG | 0.619105 | 6_4:-82653994 | Msa1000010:CDS |
| AGATAATGATGACCTAGTAG+AGG | 0.619985 | 6_4:+82653716 | None:intergenic |
| TGGATGGTGCCCCATACTTG+AGG | 0.620867 | 6_4:-82658121 | Msa1000010:CDS |
| CTAGGGAACAAATTGTAGGA+TGG | 0.620947 | 6_4:-82658250 | Msa1000010:intron |
| AAGCAAGGGTCGTTATGAGA+GGG | 0.642243 | 6_4:-82653847 | Msa1000010:three_prime_UTR |
| AAAGATAGTTCCAACCAACA+AGG | 0.652975 | 6_4:-82659235 | Msa1000010:CDS |
| ATCCACTTTCCTCAAGTATG+GGG | 0.656738 | 6_4:+82658112 | None:intergenic |
| CCACAGTATTGGGCACACAC+AGG | 0.670059 | 6_4:-82655738 | Msa1000010:CDS |
| CCTGTGTGTGCCCAATACTG+TGG | 0.699772 | 6_4:+82655738 | None:intergenic |
| GTTGTGATGATGGTATTACT+GGG | 0.723028 | 6_4:-82657142 | Msa1000010:CDS |
| TGTGGCGAGAGTAAAGAAAG+GGG | 0.727480 | 6_4:-82654157 | Msa1000010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTTCTTTTATCAT+TGG | + | chr6_4:82654321-82654340 | None:intergenic | 10.0% |
| !! | ATAACTTCAAAATTTATATT+TGG | + | chr6_4:82654989-82655008 | None:intergenic | 10.0% |
| !! | NNNNNNNNAATATGATTGAT+TGG | - | chr6_4:82655953-82655972 | Msa1000010:intron | 10.0% |
| !!! | TTTTGTAATTAAAAAATGAT+TGG | + | chr6_4:82657743-82657762 | None:intergenic | 10.0% |
| !!! | ATTTAATTTATATACATCAA+CGG | - | chr6_4:82657813-82657832 | Msa1000010:intron | 10.0% |
| !!! | AAATTTTGTGTTAAATTTCT+AGG | - | chr6_4:82654233-82654252 | Msa1000010:intron | 15.0% |
| !!! | CATTTATATATTTTCATGTT+TGG | - | chr6_4:82656084-82656103 | Msa1000010:intron | 15.0% |
| !! | ATTGAAAATATCAATAACAA+AGG | - | chr6_4:82656229-82656248 | Msa1000010:intron | 15.0% |
| !! | AAAATTTGTCTCTTAATTTA+AGG | - | chr6_4:82656541-82656560 | Msa1000010:intron | 15.0% |
| !! | AATTTCCAACAAAAATATTA+AGG | - | chr6_4:82656892-82656911 | Msa1000010:intron | 15.0% |
| !! | TATAATAGAAGTTTAAGTAA+AGG | + | chr6_4:82657382-82657401 | None:intergenic | 15.0% |
| !!! | TTTAATTTATATACATCAAC+GGG | - | chr6_4:82657814-82657833 | Msa1000010:intron | 15.0% |
| !! | ATTATATGAATTACCTAAAA+AGG | + | chr6_4:82657888-82657907 | None:intergenic | 15.0% |
| !!! | TAAAGTCTTCAAATTTATTT+TGG | + | chr6_4:82658677-82658696 | None:intergenic | 15.0% |
| !!! | TTTTTTATCAAGTAACAAAT+AGG | + | chr6_4:82658800-82658819 | None:intergenic | 15.0% |
| !!! | ATAAAAAAGAAATATCGATT+TGG | - | chr6_4:82658812-82658831 | Msa1000010:intron | 15.0% |
| !! | TGAAAATATATAAATGTTTG+TGG | - | chr6_4:82659041-82659060 | Msa1000010:intron | 15.0% |
| !! | AAAGCTACTAAATTATAATA+AGG | + | chr6_4:82659414-82659433 | None:intergenic | 15.0% |
| !!! | TTAAATTTCTAGGCTTTATT+TGG | - | chr6_4:82654243-82654262 | Msa1000010:intron | 20.0% |
| !! | GTATAAGCAATTATCATATA+AGG | - | chr6_4:82654271-82654290 | Msa1000010:intron | 20.0% |
| !! | ATTGAAATAACTTCTACATA+AGG | + | chr6_4:82654297-82654316 | None:intergenic | 20.0% |
| !!! | GTTATGTACGTTTTAAATAA+AGG | + | chr6_4:82655543-82655562 | None:intergenic | 20.0% |
| !!! | TTTAAAACGTACATAACTAA+AGG | - | chr6_4:82655546-82655565 | Msa1000010:intron | 20.0% |
| !! | TTAAAACGTACATAACTAAA+GGG | - | chr6_4:82655547-82655566 | Msa1000010:intron | 20.0% |
| !! | TTTAAAGGAGTGATATTAAT+AGG | - | chr6_4:82655620-82655639 | Msa1000010:intron | 20.0% |
| !! | AAATAAACATAGAATCAAGT+TGG | + | chr6_4:82656003-82656022 | None:intergenic | 20.0% |
| !! | AAAATATATAAATGCACACA+TGG | + | chr6_4:82656078-82656097 | None:intergenic | 20.0% |
| !!! | TTAATTTAAGGCATTACAAT+CGG | - | chr6_4:82656553-82656572 | Msa1000010:intron | 20.0% |
| !! | AAGATTCATTACATAAGATT+TGG | + | chr6_4:82657035-82657054 | None:intergenic | 20.0% |
| !! | AAACAAAGTAAGCAATAATT+GGG | + | chr6_4:82657466-82657485 | None:intergenic | 20.0% |
| !! | TAAACAAAGTAAGCAATAAT+TGG | + | chr6_4:82657467-82657486 | None:intergenic | 20.0% |
| !!! | CTTACTTTGTTTAATATAGA+AGG | - | chr6_4:82657474-82657493 | Msa1000010:intron | 20.0% |
| !! | TTAAATTCTAGATTCCAAAT+TGG | - | chr6_4:82657525-82657544 | Msa1000010:CDS | 20.0% |
| !! | AAATATTATCGACACTATTT+GGG | + | chr6_4:82657638-82657657 | None:intergenic | 20.0% |
| !! | AAAATATTATCGACACTATT+TGG | + | chr6_4:82657639-82657658 | None:intergenic | 20.0% |
| !!! | AAATAGTGTCGATAATATTT+TGG | - | chr6_4:82657638-82657657 | Msa1000010:intron | 20.0% |
| !!! | TTATTTGTTACCTAGTTTTT+TGG | + | chr6_4:82657687-82657706 | None:intergenic | 20.0% |
| !!! | TTTTGTGTAGTTATTGTAAT+TGG | + | chr6_4:82658229-82658248 | None:intergenic | 20.0% |
| !!! | TTTACAATTTTTAACTCTGA+TGG | + | chr6_4:82658592-82658611 | None:intergenic | 20.0% |
| !!! | CAAATTTATTTTGGTTTGTT+TGG | + | chr6_4:82658668-82658687 | None:intergenic | 20.0% |
| !! | TAGGTATTTGTAAAGAATAA+AGG | - | chr6_4:82658739-82658758 | Msa1000010:intron | 20.0% |
| !! | AAAGAATAAAGGTTCAAATT+TGG | - | chr6_4:82658750-82658769 | Msa1000010:intron | 20.0% |
| !!! | ATATATTTTCATTTGTGTAG+TGG | + | chr6_4:82659032-82659051 | None:intergenic | 20.0% |
| ! | TTCAGTTTACAAAACTACTT+TGG | + | chr6_4:82653801-82653820 | None:intergenic | 25.0% |
| !! | TTTTCTCAAAGAAGTAACAA+TGG | - | chr6_4:82653872-82653891 | Msa1000010:three_prime_UTR | 25.0% |
| !!! | TGCTTAATGGTTTATTTTCA+AGG | - | chr6_4:82653999-82654018 | Msa1000010:CDS | 25.0% |
| !!! | GCTTAATGGTTTATTTTCAA+GGG | - | chr6_4:82654000-82654019 | Msa1000010:CDS | 25.0% |
| ! | TTTCTTCAAACCAATTTCAA+TGG | + | chr6_4:82654047-82654066 | None:intergenic | 25.0% |
| !!! | GTTATTTTCACAAGCTATTA+TGG | - | chr6_4:82654354-82654373 | Msa1000010:intron | 25.0% |
| ! | CTTATGATATTATCAGCTTA+TGG | + | chr6_4:82654414-82654433 | None:intergenic | 25.0% |
| ! | AATAGATAAACTCAAACAAG+AGG | + | chr6_4:82654748-82654767 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACATTGTA+CGG | + | chr6_4:82654828-82654847 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAGGTTATTA+TGG | + | chr6_4:82654865-82654884 | None:intergenic | 25.0% |
| !!! | AAGCTATAAGTTGTTTTCAT+AGG | + | chr6_4:82654874-82654893 | None:intergenic | 25.0% |
| ! | GAAGTTATAATCAAATCCTA+TGG | - | chr6_4:82655001-82655020 | Msa1000010:CDS | 25.0% |
| ! | GAAGACAAAAATTAAACCAT+AGG | + | chr6_4:82655020-82655039 | None:intergenic | 25.0% |
| !!! | AAAGTGGATCTCAAATTTTT+TGG | - | chr6_4:82655201-82655220 | Msa1000010:intron | 25.0% |
| !! | ACAACTAAACATCTTTTCTA+GGG | + | chr6_4:82655250-82655269 | None:intergenic | 25.0% |
| !! | AACAACTAAACATCTTTTCT+AGG | + | chr6_4:82655251-82655270 | None:intergenic | 25.0% |
| !! | TAGGTTTAAGATAACAATCT+CGG | - | chr6_4:82655331-82655350 | Msa1000010:intron | 25.0% |
| !!! | TAGTACCGATTTTAGATTTA+AGG | - | chr6_4:82655421-82655440 | Msa1000010:intron | 25.0% |
| !!! | TTTTGATGAATGAAAAGTGT+AGG | - | chr6_4:82655697-82655716 | Msa1000010:intron | 25.0% |
| ! | NNNNAATATGATTGATTGGC+TGG | - | chr6_4:82655957-82655976 | Msa1000010:intron | 25.0% |
| ! | AATAACAAAGGACCATATAT+TGG | - | chr6_4:82656241-82656260 | Msa1000010:intron | 25.0% |
| !! | ACTAGCTTGAACAAAAATAA+AGG | + | chr6_4:82656451-82656470 | None:intergenic | 25.0% |
| ! | TTTGATACCATGTTGAAATT+GGG | - | chr6_4:82656695-82656714 | Msa1000010:intron | 25.0% |
| !! | AAGATTTTGAACACAAGATT+CGG | - | chr6_4:82656952-82656971 | Msa1000010:intron | 25.0% |
| ! | CTCTTTCAAAGAAAAAAACA+AGG | - | chr6_4:82657176-82657195 | Msa1000010:CDS | 25.0% |
| ! | ATATGAATTACCTAAAAAGG+TGG | + | chr6_4:82657885-82657904 | None:intergenic | 25.0% |
| ! | TTTATGATTTAATTGAGCAG+AGG | - | chr6_4:82658151-82658170 | Msa1000010:CDS | 25.0% |
| ! | CCTTGCTTATTCATTAAAAA+GGG | + | chr6_4:82659440-82659459 | None:intergenic | 25.0% |
| !! | CCTTTTTAATGAATAAGCAA+GGG | - | chr6_4:82659438-82659457 | Msa1000010:CDS | 25.0% |
| TAAAGTTTCCACTACTACAA+TGG | - | chr6_4:82653835-82653854 | Msa1000010:three_prime_UTR | 30.0% | |
| TACTCTTTATGCATGCTTAA+TGG | - | chr6_4:82653986-82654005 | Msa1000010:CDS | 30.0% | |
| !! | TTATTTTCAAGGGCAAAAAG+AGG | - | chr6_4:82654010-82654029 | Msa1000010:CDS | 30.0% |
| ! | TTTTCAGATGCCATTGAAAT+TGG | - | chr6_4:82654034-82654053 | Msa1000010:CDS | 30.0% |
| AAGAAGAAGTCTCAGATATA+TGG | - | chr6_4:82654136-82654155 | Msa1000010:CDS | 30.0% | |
| CAGTAAATCAACAATGAAAG+TGG | + | chr6_4:82654582-82654601 | None:intergenic | 30.0% | |
| AAGAGGATCATTAACACTAT+AGG | + | chr6_4:82654731-82654750 | None:intergenic | 30.0% | |
| TTATTATGGTTGAGAGCTTA+TGG | + | chr6_4:82654851-82654870 | None:intergenic | 30.0% | |
| TTTGTCTTCATTTCTGATCT+AGG | - | chr6_4:82655031-82655050 | Msa1000010:CDS | 30.0% | |
| TTGTCTTCATTTCTGATCTA+GGG | - | chr6_4:82655032-82655051 | Msa1000010:CDS | 30.0% | |
| TTGAATTCTTCCTGAAAGAA+CGG | + | chr6_4:82655083-82655102 | None:intergenic | 30.0% | |
| TTCTTTCAGGAAGAATTCAA+TGG | - | chr6_4:82655083-82655102 | Msa1000010:CDS | 30.0% | |
| !!! | ATCATTCTTTTGAGATTGAG+TGG | + | chr6_4:82655109-82655128 | None:intergenic | 30.0% |
| !! | TACATAAAGGCATCCAAATT+TGG | + | chr6_4:82655148-82655167 | None:intergenic | 30.0% |
| ! | CCATGCTAACTTTTACATAA+AGG | + | chr6_4:82655161-82655180 | None:intergenic | 30.0% |
| CCTTTATGTAAAAGTTAGCA+TGG | - | chr6_4:82655158-82655177 | Msa1000010:intron | 30.0% | |
| TATGTAAAAGTTAGCATGGA+TGG | - | chr6_4:82655162-82655181 | Msa1000010:intron | 30.0% | |
| !!! | CAAATTTTTTGGCACTTACA+AGG | - | chr6_4:82655212-82655231 | Msa1000010:intron | 30.0% |
| ! | AGGTTTAAGATAACAATCTC+GGG | - | chr6_4:82655332-82655351 | Msa1000010:intron | 30.0% |
| GTTGATATTGTGGAGAATTA+CGG | - | chr6_4:82655367-82655386 | Msa1000010:intron | 30.0% | |
| ! | ACACGCCTTAAATCTAAAAT+CGG | + | chr6_4:82655429-82655448 | None:intergenic | 30.0% |
| ATTTGAAAACATCTCGATGA+CGG | + | chr6_4:82655469-82655488 | None:intergenic | 30.0% | |
| ACAACACTGATACAATGAAA+AGG | + | chr6_4:82655497-82655516 | None:intergenic | 30.0% | |
| TAAAAATCTCCTTAGCTCAA+TGG | + | chr6_4:82655604-82655623 | None:intergenic | 30.0% | |
| ! | TGAGCTAAGGAGATTTTTAA+AGG | - | chr6_4:82655605-82655624 | Msa1000010:intron | 30.0% |
| ! | ATGAAAAGTGTAGGTCAATT+TGG | - | chr6_4:82655706-82655725 | Msa1000010:intron | 30.0% |
| TTTGTGTGAAAGTAGATTGA+TGG | - | chr6_4:82655756-82655775 | Msa1000010:CDS | 30.0% | |
| ATCACCATCTTTATCTTCAT+AGG | + | chr6_4:82655812-82655831 | None:intergenic | 30.0% | |
| ATGAAGATAAAGATGGTGAT+TGG | - | chr6_4:82655812-82655831 | Msa1000010:CDS | 30.0% | |
| ! | TCTCCAAGAAAGTTGATTAA+TGG | + | chr6_4:82656206-82656225 | None:intergenic | 30.0% |
| !! | AAGTAAGGAAACTTGTTATG+AGG | + | chr6_4:82656325-82656344 | None:intergenic | 30.0% |
| AAAGGCAGAAAGATGAAAAA+AGG | + | chr6_4:82656433-82656452 | None:intergenic | 30.0% | |
| ! | AGTTTGAAATATTCGACTGT+TGG | - | chr6_4:82656506-82656525 | Msa1000010:intron | 30.0% |
| TTACAACACAAATCTAGCAA+TGG | - | chr6_4:82656622-82656641 | Msa1000010:intron | 30.0% | |
| TACAACACAAATCTAGCAAT+GGG | - | chr6_4:82656623-82656642 | Msa1000010:intron | 30.0% | |
| CTTTGATACCATGTTGAAAT+TGG | - | chr6_4:82656694-82656713 | Msa1000010:intron | 30.0% | |
| TTGATACCATGTTGAAATTG+GGG | - | chr6_4:82656696-82656715 | Msa1000010:intron | 30.0% | |
| CTAACTCATCGTTACAAAAT+TGG | - | chr6_4:82656720-82656739 | Msa1000010:intron | 30.0% | |
| !! | AGGCACCTTAATATTTTTGT+TGG | + | chr6_4:82656900-82656919 | None:intergenic | 30.0% |
| ! | ATATTAAGGTGCCTTTGATA+TGG | - | chr6_4:82656906-82656925 | Msa1000010:intron | 30.0% |
| TTTCTCAACTACCATATCAA+AGG | + | chr6_4:82656920-82656939 | None:intergenic | 30.0% | |
| ! | ACAATGTAGGAAGACATTTT+CGG | - | chr6_4:82657276-82657295 | Msa1000010:intron | 30.0% |
| AAGGTTATTGTTGTAATGAC+TGG | - | chr6_4:82657320-82657339 | Msa1000010:intron | 30.0% | |
| ! | GAAGTTTAAGTAAAGGCATA+AGG | + | chr6_4:82657375-82657394 | None:intergenic | 30.0% |
| ATAGAAGGAGTTCTACATTA+TGG | - | chr6_4:82657489-82657508 | Msa1000010:CDS | 30.0% | |
| !!! | TGTCGATAATATTTTGGCAT+GGG | - | chr6_4:82657644-82657663 | Msa1000010:intron | 30.0% |
| !!! | ATAATATTTTGGCATGGGAA+TGG | - | chr6_4:82657649-82657668 | Msa1000010:intron | 30.0% |
| !!! | TAATATTTTGGCATGGGAAT+GGG | - | chr6_4:82657650-82657669 | Msa1000010:intron | 30.0% |
| AGAATACTATCCAACCAAAT+TGG | - | chr6_4:82657706-82657725 | Msa1000010:intron | 30.0% | |
| CATATTTAGCGTGATCAAAT+TGG | - | chr6_4:82657921-82657940 | Msa1000010:intron | 30.0% | |
| TTGATACACCAATCTATTGA+CGG | - | chr6_4:82658017-82658036 | Msa1000010:intron | 30.0% | |
| AAAATCTGTTGAACAAGGTT+TGG | - | chr6_4:82658265-82658284 | Msa1000010:intron | 30.0% | |
| !! | TCAAAGTAAGTTTTGTCAAC+TGG | + | chr6_4:82658357-82658376 | None:intergenic | 30.0% |
| AACAAACACTCATAATGAGA+CGG | + | chr6_4:82658419-82658438 | None:intergenic | 30.0% | |
| TCTCATTATGAGTGTTTGTT+TGG | - | chr6_4:82658419-82658438 | Msa1000010:intron | 30.0% | |
| !! | TCGATTTGGTCATTATATTG+AGG | - | chr6_4:82658826-82658845 | Msa1000010:intron | 30.0% |
| !! | CGATTTGGTCATTATATTGA+GGG | - | chr6_4:82658827-82658846 | Msa1000010:intron | 30.0% |
| ATGAATCGTTCAATCAAGAT+TGG | + | chr6_4:82658968-82658987 | None:intergenic | 30.0% | |
| TAGTGGCTGAAATAAGATTT+GGG | + | chr6_4:82659015-82659034 | None:intergenic | 30.0% | |
| ! | TTTGTTGTCAACAAACACAT+TGG | + | chr6_4:82659174-82659193 | None:intergenic | 30.0% |
| !!! | CAATGAAAGGTATTTTGTGT+TGG | + | chr6_4:82659277-82659296 | None:intergenic | 30.0% |
| TAAATCAGACAATGCTCTAA+TGG | + | chr6_4:82659300-82659319 | None:intergenic | 30.0% | |
| AATAGATACTTCATTGCTCA+AGG | + | chr6_4:82659339-82659358 | None:intergenic | 30.0% | |
| ! | AACATCAAATGCATTTTGAG+AGG | + | chr6_4:82659375-82659394 | None:intergenic | 30.0% |
| ! | CCCTTTTTAATGAATAAGCA+AGG | - | chr6_4:82659437-82659456 | Msa1000010:CDS | 30.0% |
| CCCTTGCTTATTCATTAAAA+AGG | + | chr6_4:82659441-82659460 | None:intergenic | 30.0% | |
| AGAACTTTCCATTGTAGTAG+TGG | + | chr6_4:82653846-82653865 | None:intergenic | 35.0% | |
| AGAAGATCATTATCTCTCTC+TGG | + | chr6_4:82653950-82653969 | None:intergenic | 35.0% | |
| AAAGATAGTTCCAACCAACA+AGG | - | chr6_4:82654064-82654083 | Msa1000010:CDS | 35.0% | |
| GACTTCTTCTTCTCATTCAA+AGG | + | chr6_4:82654127-82654146 | None:intergenic | 35.0% | |
| AGCTTATGGAAAATCGCTTA+CGG | + | chr6_4:82654400-82654419 | None:intergenic | 35.0% | |
| AAGCACTTGTGAGACTATTT+AGG | - | chr6_4:82654773-82654792 | Msa1000010:intron | 35.0% | |
| TGATCTAGGGAACAAATTGT+AGG | - | chr6_4:82655045-82655064 | Msa1000010:CDS | 35.0% | |
| GATGATGTAGAAGCCAAATT+TGG | - | chr6_4:82655132-82655151 | Msa1000010:intron | 35.0% | |
| GTACATAACTAAAGGGTAGT+TGG | - | chr6_4:82655554-82655573 | Msa1000010:intron | 35.0% | |
| ! | GTAGTTGGTTCATATGCTAA+GGG | - | chr6_4:82655569-82655588 | Msa1000010:intron | 35.0% |
| CATCTTTATCTTCATAGGTG+AGG | + | chr6_4:82655807-82655826 | None:intergenic | 35.0% | |
| CTCACCTATGAAGATAAAGA+TGG | - | chr6_4:82655805-82655824 | Msa1000010:CDS | 35.0% | |
| GTTGGATTTGAATGTATGCA+GGG | + | chr6_4:82655985-82656004 | None:intergenic | 35.0% | |
| AGTTGGATTTGAATGTATGC+AGG | + | chr6_4:82655986-82656005 | None:intergenic | 35.0% | |
| ACCACTTGAAAGAGAACAAT+TGG | - | chr6_4:82656107-82656126 | Msa1000010:intron | 35.0% | |
| TCCAATTGTTCTCTTTCAAG+TGG | + | chr6_4:82656111-82656130 | None:intergenic | 35.0% | |
| ACTTGAAAGAGAACAATTGG+AGG | - | chr6_4:82656110-82656129 | Msa1000010:intron | 35.0% | |
| !! | AGTTGTGATGATGGTATTAC+TGG | - | chr6_4:82656156-82656175 | Msa1000010:intron | 35.0% |
| !! | GTTGTGATGATGGTATTACT+GGG | - | chr6_4:82656157-82656176 | Msa1000010:intron | 35.0% |
| ! | GTGCCATTAATCAACTTTCT+TGG | - | chr6_4:82656200-82656219 | Msa1000010:intron | 35.0% |
| GGCACAACTATACCAATATA+TGG | + | chr6_4:82656256-82656275 | None:intergenic | 35.0% | |
| AAGAAGAGGATTCAACTCAA+AGG | + | chr6_4:82656284-82656303 | None:intergenic | 35.0% | |
| ! | TTTCCTTACTTTGACTTTGC+TGG | - | chr6_4:82656334-82656353 | Msa1000010:intron | 35.0% |
| TTACCAGCAAAGTCAAAGTA+AGG | + | chr6_4:82656340-82656359 | None:intergenic | 35.0% | |
| CAAGCTAGTTCAATAGTTTC+TGG | - | chr6_4:82656462-82656481 | Msa1000010:intron | 35.0% | |
| !! | CGTTACAAAATTGGTTCGTA+AGG | - | chr6_4:82656729-82656748 | Msa1000010:intron | 35.0% |
| GCAACTCAATTGTTGCAAAT+AGG | - | chr6_4:82656840-82656859 | Msa1000010:intron | 35.0% | |
| ACTCAATTGTTGCAAATAGG+CGG | - | chr6_4:82656843-82656862 | Msa1000010:intron | 35.0% | |
| ATGGTAGTTGAGAAATTACG+TGG | - | chr6_4:82656925-82656944 | Msa1000010:intron | 35.0% | |
| TAGAAAAGATTGAACGCTAG+AGG | + | chr6_4:82657076-82657095 | None:intergenic | 35.0% | |
| TTTCGTAAACTCGACAATGT+AGG | - | chr6_4:82657263-82657282 | Msa1000010:intron | 35.0% | |
| TGGCGAATTGGAAAAGAAAA+AGG | - | chr6_4:82657301-82657320 | Msa1000010:intron | 35.0% | |
| GTTCTACATTATGGAATTGC+AGG | - | chr6_4:82657498-82657517 | Msa1000010:CDS | 35.0% | |
| GAATTGTCACATCTCCAATT+TGG | + | chr6_4:82657542-82657561 | None:intergenic | 35.0% | |
| ATGTGACAATTCCACAGTAT+TGG | - | chr6_4:82657550-82657569 | Msa1000010:CDS | 35.0% | |
| TGTGACAATTCCACAGTATT+GGG | - | chr6_4:82657551-82657570 | Msa1000010:CDS | 35.0% | |
| !!! | GTGTCGATAATATTTTGGCA+TGG | - | chr6_4:82657643-82657662 | Msa1000010:intron | 35.0% |
| ! | TTTTGACACCGTCAATAGAT+TGG | + | chr6_4:82658028-82658047 | None:intergenic | 35.0% |
| GATTTAATTGAGCAGAGGTT+TGG | - | chr6_4:82658156-82658175 | Msa1000010:CDS | 35.0% | |
| TGGAGATTTCAGAACAGAAT+TGG | - | chr6_4:82658188-82658207 | Msa1000010:CDS | 35.0% | |
| GGAGATTTCAGAACAGAATT+GGG | - | chr6_4:82658189-82658208 | Msa1000010:CDS | 35.0% | |
| CACAAAACATTCCAAATCAG+AGG | - | chr6_4:82658242-82658261 | Msa1000010:CDS | 35.0% | |
| ! | CAACAGATTTTCCTCTGATT+TGG | + | chr6_4:82658256-82658275 | None:intergenic | 35.0% |
| AGAGGAAAATCTGTTGAACA+AGG | - | chr6_4:82658260-82658279 | Msa1000010:intron | 35.0% | |
| TCAACAGGAAAAATTCTCTC+TGG | + | chr6_4:82658297-82658316 | None:intergenic | 35.0% | |
| ! | GAGAGAATTTTTCCTGTTGA+TGG | - | chr6_4:82658297-82658316 | Msa1000010:intron | 35.0% |
| TTGATGGAACTCCTGAAATT+TGG | - | chr6_4:82658313-82658332 | Msa1000010:intron | 35.0% | |
| TGAAATTGCAAGAAAGCTCA+AGG | - | chr6_4:82658374-82658393 | Msa1000010:intron | 35.0% | |
| !!! | GAGTGTTTGTTTGGTTTTTG+CGG | - | chr6_4:82658428-82658447 | Msa1000010:intron | 35.0% |
| TTGAACGATTCATGTGTGAT+TGG | - | chr6_4:82658975-82658994 | Msa1000010:intron | 35.0% | |
| GTAGTGGCTGAAATAAGATT+TGG | + | chr6_4:82659016-82659035 | None:intergenic | 35.0% | |
| TTCGACATTCTGTAGAGAAT+AGG | + | chr6_4:82659078-82659097 | None:intergenic | 35.0% | |
| AATGCTCTAATGGCAATGAA+AGG | + | chr6_4:82659290-82659309 | None:intergenic | 35.0% | |
| AGAGAGAGAGAGTTGAATAG+TGG | + | chr6_4:82653744-82653763 | None:intergenic | 40.0% | |
| TAACAATGGCTTGAACCTCA+AGG | - | chr6_4:82653886-82653905 | Msa1000010:exon | 40.0% | |
| AAGGCTACTGAGTTAAGACT+TGG | - | chr6_4:82653905-82653924 | Msa1000010:CDS | 40.0% | |
| ! | GAGTTAAGACTTGGTTTACC+TGG | - | chr6_4:82653914-82653933 | Msa1000010:CDS | 40.0% |
| CTAGGGAACAAATTGTAGGA+TGG | - | chr6_4:82655049-82655068 | Msa1000010:CDS | 40.0% | |
| TTCTTCCTGAAAGAACGGAT+TGG | + | chr6_4:82655078-82655097 | None:intergenic | 40.0% | |
| ATCCACTTTCCTCAAGTATG+GGG | + | chr6_4:82655190-82655209 | None:intergenic | 40.0% | |
| GATCCACTTTCCTCAAGTAT+GGG | + | chr6_4:82655191-82655210 | None:intergenic | 40.0% | |
| AGATCCACTTTCCTCAAGTA+TGG | + | chr6_4:82655192-82655211 | None:intergenic | 40.0% | |
| ! | TCTCATTTTGCTTGTGCACT+AGG | - | chr6_4:82655312-82655331 | Msa1000010:intron | 40.0% |
| CGTCATGATCGTTGATATTG+TGG | - | chr6_4:82655357-82655376 | Msa1000010:intron | 40.0% | |
| TGGAGAATTACGGTAAAACG+CGG | - | chr6_4:82655377-82655396 | Msa1000010:intron | 40.0% | |
| ! | GGTAGTTGGTTCATATGCTA+AGG | - | chr6_4:82655568-82655587 | Msa1000010:intron | 40.0% |
| ! | TGGTTGATTCCATTGAGCTA+AGG | - | chr6_4:82655592-82655611 | Msa1000010:intron | 40.0% |
| !!! | TTTGGCTCTCATGGAGTTTT+TGG | - | chr6_4:82655724-82655743 | Msa1000010:CDS | 40.0% |
| !!! | TCTCATGGAGTTTTTGGTCA+AGG | - | chr6_4:82655730-82655749 | Msa1000010:CDS | 40.0% |
| ! | AGATTGATGGATCTCCTTCA+TGG | - | chr6_4:82655769-82655788 | Msa1000010:CDS | 40.0% |
| GGACATATTCTGAACCATGA+AGG | + | chr6_4:82655786-82655805 | None:intergenic | 40.0% | |
| AGAGAACAATTGGAGGAGAA+TGG | - | chr6_4:82656117-82656136 | Msa1000010:intron | 40.0% | |
| AGGAGAATGGAGTTTCTTCT+AGG | - | chr6_4:82656130-82656149 | Msa1000010:intron | 40.0% | |
| TCTAGGTGTAGTTGTGATGA+TGG | - | chr6_4:82656147-82656166 | Msa1000010:intron | 40.0% | |
| GGAAGTAGCATCAATGCTTA+TGG | - | chr6_4:82656178-82656197 | Msa1000010:intron | 40.0% | |
| !! | GGATTCAACTCAAAGGCATT+TGG | + | chr6_4:82656277-82656296 | None:intergenic | 40.0% |
| AAGCTGGATGATTGAAGAAG+AGG | + | chr6_4:82656298-82656317 | None:intergenic | 40.0% | |
| ! | CTTGTTATGAGGAACAAAGC+TGG | + | chr6_4:82656314-82656333 | None:intergenic | 40.0% |
| !! | TAGTTTCTGGTGATGAGTAC+TGG | - | chr6_4:82656475-82656494 | Msa1000010:intron | 40.0% |
| CCTATTCTACATCTACTGCT+GGG | + | chr6_4:82656674-82656693 | None:intergenic | 40.0% | |
| GTTAGACCCCAATTTCAACA+TGG | + | chr6_4:82656705-82656724 | None:intergenic | 40.0% | |
| ACATCCTCAAAACCAACACA+AGG | - | chr6_4:82656818-82656837 | Msa1000010:intron | 40.0% | |
| ! | ACAATTGAGTTGCCTTGTGT+TGG | + | chr6_4:82656833-82656852 | None:intergenic | 40.0% |
| ATTGTTGCAAATAGGCGGAT+AGG | - | chr6_4:82656848-82656867 | Msa1000010:intron | 40.0% | |
| TTGTTGCAAATAGGCGGATA+GGG | - | chr6_4:82656849-82656868 | Msa1000010:intron | 40.0% | |
| CGCTAGAGGAAAATACTTAG+TGG | + | chr6_4:82657062-82657081 | None:intergenic | 40.0% | |
| ! | GTAGGAAGACATTTTCGGAT+TGG | - | chr6_4:82657281-82657300 | Msa1000010:intron | 40.0% |
| !!! | ACATTTTCGGATTGGCGAAT+TGG | - | chr6_4:82657289-82657308 | Msa1000010:intron | 40.0% |
| TGTAATGACTGGAGAGAGTA+TGG | - | chr6_4:82657331-82657350 | Msa1000010:intron | 40.0% | |
| ! | CTTTTTGTGCAGCTAAATGC+AGG | - | chr6_4:82657432-82657451 | Msa1000010:intron | 40.0% |
| ! | ATGGGGCATTCCAAAAAACT+AGG | - | chr6_4:82657674-82657693 | Msa1000010:intron | 40.0% |
| AGCACTTTGACCAATTTGGT+TGG | + | chr6_4:82657719-82657738 | None:intergenic | 40.0% | |
| TGGTAGCACTTTGACCAATT+TGG | + | chr6_4:82657723-82657742 | None:intergenic | 40.0% | |
| ATTTCAGGAGTTCCATCAAC+AGG | + | chr6_4:82658312-82658331 | None:intergenic | 40.0% | |
| !! | AAATTTGGCAGCCTGCTTTT+TGG | - | chr6_4:82658328-82658347 | Msa1000010:intron | 40.0% |
| !!! | AATTTGGCAGCCTGCTTTTT+GGG | - | chr6_4:82658329-82658348 | Msa1000010:intron | 40.0% |
| TCATAATGAGACGGTCAATC+GGG | + | chr6_4:82658410-82658429 | None:intergenic | 40.0% | |
| CTCATAATGAGACGGTCAAT+CGG | + | chr6_4:82658411-82658430 | None:intergenic | 40.0% | |
| TTCTTTACTCTCGCCACAAT+AGG | + | chr6_4:82659140-82659159 | None:intergenic | 40.0% | |
| ATTGTGGCGAGAGTAAAGAA+AGG | - | chr6_4:82659140-82659159 | Msa1000010:intron | 40.0% | |
| TTGTGGCGAGAGTAAAGAAA+GGG | - | chr6_4:82659141-82659160 | Msa1000010:intron | 40.0% | |
| !! | AGAGCATTGTCTGATTTAGC+TGG | - | chr6_4:82659302-82659321 | Msa1000010:CDS | 40.0% |
| ! | GTCTTAACTCAGTAGCCTTG+AGG | + | chr6_4:82653904-82653923 | None:intergenic | 45.0% |
| CACAACAGAACCTTGTTGGT+TGG | + | chr6_4:82654077-82654096 | None:intergenic | 45.0% | |
| CCTTCACAACAGAACCTTGT+TGG | + | chr6_4:82654081-82654100 | None:intergenic | 45.0% | |
| CCAACAAGGTTCTGTTGTGA+AGG | - | chr6_4:82654078-82654097 | Msa1000010:CDS | 45.0% | |
| !! | TTCCTGAAAGAACGGATTGG+TGG | + | chr6_4:82655075-82655094 | None:intergenic | 45.0% |
| AGTGTTGTGTCCGATGTTTG+TGG | - | chr6_4:82655509-82655528 | Msa1000010:intron | 45.0% | |
| ! | GTTGGTTCATATGCTAAGGG+TGG | - | chr6_4:82655572-82655591 | Msa1000010:intron | 45.0% |
| !! | GTAGGTCAATTTGGCTCTCA+TGG | - | chr6_4:82655715-82655734 | Msa1000010:intron | 45.0% |
| GATGGTGATTGGATGCTAGT+TGG | - | chr6_4:82655823-82655842 | Msa1000010:CDS | 45.0% | |
| !! | TGCTAGTTGGTGATGTTCCA+TGG | - | chr6_4:82655836-82655855 | Msa1000010:CDS | 45.0% |
| ! | CTAGCAATGGGTCTGAAGTA+TGG | - | chr6_4:82656635-82656654 | Msa1000010:intron | 45.0% |
| CCCAGCAGTAGATGTAGAAT+AGG | - | chr6_4:82656671-82656690 | Msa1000010:intron | 45.0% | |
| GCCTATTCTACATCTACTGC+TGG | + | chr6_4:82656675-82656694 | None:intergenic | 45.0% | |
| !!! | GTTGCCTTGTGTTGGTTTTG+AGG | + | chr6_4:82656825-82656844 | None:intergenic | 45.0% |
| ! | TTTTGGCATGGGAATGGGTA+TGG | - | chr6_4:82657655-82657674 | Msa1000010:intron | 45.0% |
| TTTGGCATGGGAATGGGTAT+GGG | - | chr6_4:82657656-82657675 | Msa1000010:intron | 45.0% | |
| ! | CATCATGTCGCCACCTTTTT+AGG | - | chr6_4:82657872-82657891 | Msa1000010:intron | 45.0% |
| !! | CAGAGGTTTGGTGAAGACAT+TGG | - | chr6_4:82658168-82658187 | Msa1000010:CDS | 45.0% |
| AAAGCAGGCTGCCAAATTTC+AGG | + | chr6_4:82658327-82658346 | None:intergenic | 45.0% | |
| TCAACTGGAACCCAAAAAGC+AGG | + | chr6_4:82658342-82658361 | None:intergenic | 45.0% | |
| CATAATGAGACGGTCAATCG+GGG | + | chr6_4:82658409-82658428 | None:intergenic | 45.0% | |
| TGTGACTGCCTGAAGTTAGT+TGG | - | chr6_4:82658867-82658886 | Msa1000010:intron | 45.0% | |
| ACTGCCTGAAGTTAGTTGGA+CGG | - | chr6_4:82658871-82658890 | Msa1000010:intron | 45.0% | |
| TAGACCGTCCAACTAACTTC+AGG | + | chr6_4:82658878-82658897 | None:intergenic | 45.0% | |
| CTTGCCAAGAAAGCCTATTG+TGG | - | chr6_4:82659124-82659143 | Msa1000010:intron | 45.0% | |
| TGTGGCGAGAGTAAAGAAAG+GGG | - | chr6_4:82659142-82659161 | Msa1000010:intron | 45.0% | |
| TGATGCTACTCCAACAGACA+TGG | - | chr6_4:82659223-82659242 | Msa1000010:CDS | 45.0% | |
| GCATTGTCTGATTTAGCTGG+AGG | - | chr6_4:82659305-82659324 | Msa1000010:CDS | 45.0% | |
| TTGTCTGATTTAGCTGGAGG+AGG | - | chr6_4:82659308-82659327 | Msa1000010:CDS | 45.0% | |
| TAAGCAAGGGTCGTTATGAG+AGG | - | chr6_4:82659451-82659470 | Msa1000010:exon | 45.0% | |
| AAGCAAGGGTCGTTATGAGA+GGG | - | chr6_4:82659452-82659471 | Msa1000010:exon | 45.0% | |
| !!! | AATTAAATTCATTTAATTTT+TGG | + | chr6_4:82657801-82657820 | None:intergenic | 5.0% |
| CTCTCTGGTGATTCAGAACC+AGG | + | chr6_4:82653935-82653954 | None:intergenic | 50.0% | |
| TGCCCCATACTTGAGGAAAG+TGG | - | chr6_4:82655185-82655204 | Msa1000010:intron | 50.0% | |
| GTCCGATGTTTGTGGCTGTT+AGG | - | chr6_4:82655517-82655536 | Msa1000010:intron | 50.0% | |
| GGCCTAACAGCCACAAACAT+CGG | + | chr6_4:82655522-82655541 | None:intergenic | 50.0% | |
| TGCAAATAGGCGGATAGGGA+CGG | - | chr6_4:82656853-82656872 | Msa1000010:intron | 50.0% | |
| ATTGGGCACACACAGGACTT+TGG | - | chr6_4:82657568-82657587 | Msa1000010:CDS | 50.0% | |
| CACACACAGGACTTTGGCAT+TGG | - | chr6_4:82657574-82657593 | Msa1000010:CDS | 50.0% | |
| TTGGCATGGGAATGGGTATG+GGG | - | chr6_4:82657657-82657676 | Msa1000010:intron | 50.0% | |
| CTCGCCACAATAGGCTTTCT+TGG | + | chr6_4:82659131-82659150 | None:intergenic | 50.0% | |
| GCAGCACTTTCCATGTCTGT+TGG | + | chr6_4:82659236-82659255 | None:intergenic | 50.0% | |
| GGCCACCAATCCGTTCTTTC+AGG | - | chr6_4:82655070-82655089 | Msa1000010:CDS | 55.0% | |
| TGGATGGTGCCCCATACTTG+AGG | - | chr6_4:82655178-82655197 | Msa1000010:intron | 55.0% | |
| CCTGTGTGTGCCCAATACTG+TGG | + | chr6_4:82657564-82657583 | None:intergenic | 55.0% | |
| ! | CCACAGTATTGGGCACACAC+AGG | - | chr6_4:82657561-82657580 | Msa1000010:CDS | 55.0% |
| !! | CACAGGACTTTGGCATTGGC+AGG | - | chr6_4:82657578-82657597 | Msa1000010:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 82653730 | 82659591 | 82653730 | ID=Msa1000010;Name=Msa1000010 |
| chr6_4 | mRNA | 82653730 | 82659591 | 82653730 | ID=Msa1000010-mRNA-1;Parent=Msa1000010;Name=Msa1000010-mRNA-1;_AED=0.26;_eAED=0.26;_QI=124|0.57|0.62|1|1|1|8|170|562 |
| chr6_4 | exon | 82653730 | 82654232 | 82653730 | ID=Msa1000010-mRNA-1:exon:15917;Parent=Msa1000010-mRNA-1 |
| chr6_4 | exon | 82654926 | 82655150 | 82654926 | ID=Msa1000010-mRNA-1:exon:15916;Parent=Msa1000010-mRNA-1 |
| chr6_4 | exon | 82655722 | 82655877 | 82655722 | ID=Msa1000010-mRNA-1:exon:15915;Parent=Msa1000010-mRNA-1 |
| chr6_4 | exon | 82655969 | 82656036 | 82655969 | ID=Msa1000010-mRNA-1:exon:15914;Parent=Msa1000010-mRNA-1 |
| chr6_4 | exon | 82656966 | 82657202 | 82656966 | ID=Msa1000010-mRNA-1:exon:15913;Parent=Msa1000010-mRNA-1 |
| chr6_4 | exon | 82657477 | 82657602 | 82657477 | ID=Msa1000010-mRNA-1:exon:15912;Parent=Msa1000010-mRNA-1 |
| chr6_4 | exon | 82658042 | 82658268 | 82658042 | ID=Msa1000010-mRNA-1:exon:15911;Parent=Msa1000010-mRNA-1 |
| chr6_4 | exon | 82659151 | 82659591 | 82659151 | ID=Msa1000010-mRNA-1:exon:15910;Parent=Msa1000010-mRNA-1 |
| chr6_4 | five_prime_UTR | 82659468 | 82659591 | 82659468 | ID=Msa1000010-mRNA-1:five_prime_utr;Parent=Msa1000010-mRNA-1 |
| chr6_4 | CDS | 82659151 | 82659467 | 82659151 | ID=Msa1000010-mRNA-1:cds;Parent=Msa1000010-mRNA-1 |
| chr6_4 | CDS | 82658042 | 82658268 | 82658042 | ID=Msa1000010-mRNA-1:cds;Parent=Msa1000010-mRNA-1 |
| chr6_4 | CDS | 82657477 | 82657602 | 82657477 | ID=Msa1000010-mRNA-1:cds;Parent=Msa1000010-mRNA-1 |
| chr6_4 | CDS | 82656966 | 82657202 | 82656966 | ID=Msa1000010-mRNA-1:cds;Parent=Msa1000010-mRNA-1 |
| chr6_4 | CDS | 82655969 | 82656036 | 82655969 | ID=Msa1000010-mRNA-1:cds;Parent=Msa1000010-mRNA-1 |
| chr6_4 | CDS | 82655722 | 82655877 | 82655722 | ID=Msa1000010-mRNA-1:cds;Parent=Msa1000010-mRNA-1 |
| chr6_4 | CDS | 82654926 | 82655150 | 82654926 | ID=Msa1000010-mRNA-1:cds;Parent=Msa1000010-mRNA-1 |
| chr6_4 | CDS | 82653900 | 82654232 | 82653900 | ID=Msa1000010-mRNA-1:cds;Parent=Msa1000010-mRNA-1 |
| chr6_4 | three_prime_UTR | 82653730 | 82653899 | 82653730 | ID=Msa1000010-mRNA-1:three_prime_utr;Parent=Msa1000010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
