AlfalfaGEDB | Msa1434220

M. sativa cultivar zhongmu-4 / Msa1434220

KEGG: -
GO: GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434220	XP_003605646.1	100.000	272	0	0	1	272	1	272	0.0	543

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434220	sp\|Q9M1S3\|ARP1_ARATH	64.356	101	36	0	2	102	3	103	1.03e-38	139

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434220	G7JRC4	100.000	272	0	0	1	272	1	272	0.0	543

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa1434220	0.829750	4.323066e-55	-8.615850e-47
Msa0017670	Msa1434220	0.806341	8.622244e-50	-8.615850e-47
Msa0030700	Msa1434220	0.828317	9.614511e-55	-8.615850e-47
Msa0042640	Msa1434220	0.835263	1.857944e-56	-8.615850e-47
Msa0074600	Msa1434220	0.806959	6.383445e-50	-8.615850e-47
Msa0077340	Msa1434220	0.820987	5.129811e-53	-8.615850e-47
Msa0077560	Msa1434220	0.808273	3.359117e-50	-8.615850e-47
Msa0078120	Msa1434220	0.811051	8.492980e-51	-8.615850e-47
Msa0081020	Msa1434220	0.800012	1.759479e-48	-8.615850e-47
Msa0081390	Msa1434220	0.808364	3.211798e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434220	MtrunA17_Chr4g0017401	100.000	259	0	0	1	259	1	259	0.0	516
Msa1434220	MtrunA17_Chr3g0144311	52.489	221	84	5	6	222	19	222	2.74e-59	190
Msa1434220	MtrunA17_Chr8g0346011	47.104	259	102	10	5	258	26	254	4.83e-59	189
Msa1434220	MtrunA17_Chr5g0426311	76.471	85	20	0	9	93	9	93	2.29e-44	151
Msa1434220	MtrunA17_Chr3g0127751	47.727	176	66	5	11	182	21	174	4.20e-42	144
Msa1434220	MtrunA17_Chr7g0276531	68.539	89	28	0	9	97	11	99	5.06e-41	142
Msa1434220	MtrunA17_Chr3g0101061	44.444	81	44	1	4	84	28	107	1.70e-20	90.9
Msa1434220	MtrunA17_Chr4g0045921	50.602	83	41	0	12	94	72	154	1.21e-18	84.3
Msa1434220	MtrunA17_Chr8g0360551	46.988	83	44	0	12	94	69	151	1.70e-18	84.7
Msa1434220	MtrunA17_Chr2g0290191	42.647	68	38	1	17	84	5	71	5.12e-18	83.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434220	AT1G33470.2	58.527	258	89	8	12	267	3	244	7.25e-94	277
Msa1434220	AT1G33470.1	58.301	259	89	9	12	267	3	245	5.90e-92	272
Msa1434220	AT1G33470.3	59.363	251	83	9	12	259	3	237	7.73e-92	271
Msa1434220	AT1G22910.2	68.362	177	44	5	10	180	7	177	1.09e-73	226
Msa1434220	AT1G22910.1	68.362	177	44	5	10	180	7	177	3.04e-73	224
Msa1434220	AT1G22910.3	68.362	177	44	5	10	180	7	177	4.95e-73	227
Msa1434220	AT1G20880.2	52.655	226	78	11	6	220	14	221	2.70e-53	174
Msa1434220	AT1G20880.3	52.655	226	78	11	6	220	14	221	2.70e-53	174
Msa1434220	AT1G20880.1	52.655	226	78	11	6	220	14	221	2.70e-53	174
Msa1434220	AT1G76460.1	49.115	226	90	8	6	222	14	223	3.10e-52	172

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Find 195 sgRNAs with CRISPR-Local

Find 510 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTTGCACGTAACCT+TGG	0.471871	tig0027488:-37997	Msa1434220:three_prime_UTR
AAAAGCCCAAATTCCAATGA+TGG	0.506294	tig0027488:+38789	None:intergenic
AAAAGGAGGAGATTGTGAAA+TGG	0.507926	tig0027488:+37858	None:intergenic
AAAAGTCCATCATTGGAATT+TGG	0.131932	tig0027488:-38795	Msa1434220:three_prime_UTR
AAACACCATGGTTAGACCAA+AGG	0.643399	tig0027488:+38861	None:intergenic
AAACACTTGCACGTAACCTT+GGG	0.501684	tig0027488:-37996	Msa1434220:three_prime_UTR
AAACCTGATGGCAAGGCAGC+AGG	0.495678	tig0027488:+39543	None:intergenic
AAACCTTTGGGCCCCTATGG+GGG	0.402979	tig0027488:+38745	None:intergenic
AAAGCCACTGGAAGATCCAA+AGG	0.627799	tig0027488:-46459	Msa1434220:CDS
AAAGTCCATCATTGGAATTT+GGG	0.334638	tig0027488:-38794	Msa1434220:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTGAATAATGCAAACTGG+TGG	-	tig0027488:37621-37640	Msa1434220:three_prime_UTR	30.0%
ATTGAATAATGCAAACTGGT+GGG	-	tig0027488:37622-37641	Msa1434220:three_prime_UTR	30.0%
GATAGAAAAAAAGAGGAAAG+GGG	+	tig0027488:37692-37711	None:intergenic	30.0%
TGAATAGAAGAGAGACAATT+AGG	+	tig0027488:37764-37783	None:intergenic	30.0%
TATAGATAGATCTAGGTGAT+GGG	+	tig0027488:37881-37900	None:intergenic	30.0%
TGAAGTCTATAGATAGATCT+AGG	+	tig0027488:37888-37907	None:intergenic	30.0%
TAGTAAGATCATCATCATCA+AGG	-	tig0027488:37982-38001	Msa1434220:three_prime_UTR	30.0%
CAACATGACTCCAATTAATT+TGG	-	tig0027488:38010-38029	Msa1434220:three_prime_UTR	30.0%
AATTGTCCTGCCAAATTAAT+TGG	+	tig0027488:38023-38042	None:intergenic	30.0%
CTAGTGAAAGAAACTAAACA+TGG	+	tig0027488:38443-38462	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027488	gene	37582	47063	37582	ID=Msa1434220;Name=Msa1434220
tig0027488	mRNA	37582	47063	37582	ID=Msa1434220-mRNA-1;Parent=Msa1434220;Name=Msa1434220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=432\|1\|1\|1\|1\|1\|6\|1388\|272
tig0027488	exon	37582	39010	37582	ID=Msa1434220-mRNA-1:exon:9041;Parent=Msa1434220-mRNA-1
tig0027488	exon	39547	39838	39547	ID=Msa1434220-mRNA-1:exon:9040;Parent=Msa1434220-mRNA-1
tig0027488	exon	43291	43327	43291	ID=Msa1434220-mRNA-1:exon:9039;Parent=Msa1434220-mRNA-1
tig0027488	exon	44449	44581	44449	ID=Msa1434220-mRNA-1:exon:9038;Parent=Msa1434220-mRNA-1
tig0027488	exon	45905	46037	45905	ID=Msa1434220-mRNA-1:exon:9037;Parent=Msa1434220-mRNA-1
tig0027488	exon	46449	47063	46449	ID=Msa1434220-mRNA-1:exon:9036;Parent=Msa1434220-mRNA-1
tig0027488	five_prime_UTR	46632	47063	46632	ID=Msa1434220-mRNA-1:five_prime_utr;Parent=Msa1434220-mRNA-1
tig0027488	CDS	46449	46631	46449	ID=Msa1434220-mRNA-1:cds;Parent=Msa1434220-mRNA-1
tig0027488	CDS	45905	46037	45905	ID=Msa1434220-mRNA-1:cds;Parent=Msa1434220-mRNA-1
tig0027488	CDS	44449	44581	44449	ID=Msa1434220-mRNA-1:cds;Parent=Msa1434220-mRNA-1
tig0027488	CDS	43291	43327	43291	ID=Msa1434220-mRNA-1:cds;Parent=Msa1434220-mRNA-1
tig0027488	CDS	39547	39838	39547	ID=Msa1434220-mRNA-1:cds;Parent=Msa1434220-mRNA-1
tig0027488	CDS	38970	39010	38970	ID=Msa1434220-mRNA-1:cds;Parent=Msa1434220-mRNA-1
tig0027488	three_prime_UTR	37582	38969	37582	ID=Msa1434220-mRNA-1:three_prime_utr;Parent=Msa1434220-mRNA-1

Gene Sequence

>Msa1434220

ATGACTCCAATTAATTTGGCAGGACAATTTGGTGACACAACATACACCAAAGTTTTTGTTGGAGGATTGGCTTGGGAAACTCAAAAAGAGACTATGAAGAAATATTTTGAGCAATTTGGTGAGATCTTGGAAGCTGTTGTTATCACTGACAAAGCCACTGGAAGATCCAAAGGCTATGGATTTGTCACTTTTCGTGAACCTGATGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCTATAATTGATGGTAGAAGAGCCAACTGCAACCTTGCTTCTTTGGGTGTCCAAAGATCTAAGCCTTCAACACCAAAACATGGAGGAGGAGGGAGGAACATTAGGGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGTGGGATCAGCTTTTCCTTCAGCTGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTTCTTACTCGCCAGATTACAGTTACCCTACGAGCTACTATGGTATGTACGGTGGGGCAACAGCACAGTACCCTGTTTATGGAAATGGACCAGCTGGAGGGATGATGACTGGTGGTGCAGCAGCAGCAGCCTACTATCCATATCTTCAATATGGCGAAGGAACCGGCGGCGCAACTACCGGCGGCTACACTTCTGGCCAAGGTTATGGTGTTAACTACCCACCTCAGGTGTTTCAATATTCTCCAATTGCTTCAACTGGTGGGTATGCTCAGCACTATGGAACACCCATTTCTCTTGCACCTTCTCCTGCTGCCTTGCCATCAGGCGTGACAATGGCTCTACAAGCTCCAATTCCTCATCGTTAG

Protein sequence

>Msa1434220

MTPINLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGSFQTGFGGVGSAFPSAATFPHYAIQQGIPYNVYGYSSYSPDYSYPTSYYGMYGGATAQYPVYGNGPAGGMMTGGAAAAAYYPYLQYGEGTGGATTGGYTSGQGYGVNYPPQVFQYSPIASTGGYAQHYGTPISLAPSPAALPSGVTMALQAPIPHR*