AlfalfaGEDB | Msa1000130

M. sativa cultivar zhongmu-4 / Msa1000130

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1000130	KEH27158.1	81.176	85	16	0	18	102	144	228	5.88e-40	144

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1000130	G8A0M6	81.176	85	16	0	18	102	144	228	2.81e-40	144

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1000130	Msa1410640	0.825493	4.548880e-54	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1000130	MtrunA17_Chr6g0486181	81.176	85	16	0	18	102	144	228	5.41e-44	144
Msa1000130	MtrunA17_Chr6g0486141	50.617	81	40	0	21	101	148	228	2.97e-20	84.0
Msa1000130	MtrunA17_Chr6g0486171	43.158	95	53	1	1	94	114	208	4.68e-16	71.6
Msa1000130	MtrunA17_Chr6g0486151	51.316	76	35	2	20	94	165	239	8.29e-16	71.2

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 21 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAATATGTTATTTGATA+CGG	0.464432	6_4:+82840166	None:intergenic
AAGTTTCTAGAACAGGGTAT+TGG	0.464513	6_4:-82840085	Msa1000130:CDS
AATAGATATTGGACTTTCAA+TGG	0.360085	6_4:-82840201	Msa1000130:CDS
AGTGGAAATAAAATAGATAT+TGG	0.266231	6_4:-82840212	Msa1000130:CDS
ATACGAAGCAATGTTGAAGA+AGG	0.501068	6_4:+82840116	None:intergenic
ATATTATTTGTTTCAGCGGA+GGG	0.515871	6_4:-82840152	Msa1000130:CDS
ATGAGCATGATTCTGACACT+GGG	0.630580	6_4:-82840043	Msa1000130:CDS
ATTAAACAAGTTTCTAGAAC+AGG	0.359747	6_4:-82840092	Msa1000130:CDS
CATATTATTTGTTTCAGCGG+AGG	0.560909	6_4:-82840153	Msa1000130:CDS
CATGAGCATGATTCTGACAC+TGG	0.533230	6_4:-82840044	Msa1000130:CDS

Showing 1 to 10 of 21 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ATATTATTTGTTTCAGCGGA+GGG	-	chr6_4:82840163-82840182	Msa1000130:CDS	30.0%
	GAATCCTTACAAAGTTACTG+TGG	-	chr6_4:82840045-82840064	Msa1000130:CDS	35.0%
	CATATTATTTGTTTCAGCGG+AGG	-	chr6_4:82840162-82840181	Msa1000130:CDS	35.0%
	TACGAAGCAATGTTGAAGAA+GGG	+	chr6_4:82840201-82840220	None:intergenic	35.0%
	ATACGAAGCAATGTTGAAGA+AGG	+	chr6_4:82840202-82840221	None:intergenic	35.0%
	TTGAACAGAATAGCATGCAG+AGG	-	chr6_4:82840019-82840038	Msa1000130:CDS	40.0%
	TGTGCCACAGTAACTTTGTA+AGG	+	chr6_4:82840052-82840071	None:intergenic	40.0%
	ATGAGCATGATTCTGACACT+GGG	-	chr6_4:82840272-82840291	Msa1000130:CDS	40.0%
	CATGAGCATGATTCTGACAC+TGG	-	chr6_4:82840271-82840290	Msa1000130:CDS	45.0%
!	AATAGATATTGGACTTTCAA+TGG	-	chr6_4:82840114-82840133	Msa1000130:CDS	25.0%

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	82839992	82840345	82839992	ID=Msa1000130;Name=Msa1000130
chr6_4	mRNA	82839992	82840345	82839992	ID=Msa1000130-mRNA-1;Parent=Msa1000130;Name=Msa1000130-mRNA-1;_AED=0.38;_eAED=0.41;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|117
chr6_4	exon	82839992	82840345	82839992	ID=Msa1000130-mRNA-1:exon:15965;Parent=Msa1000130-mRNA-1
chr6_4	CDS	82839992	82840345	82839992	ID=Msa1000130-mRNA-1:cds;Parent=Msa1000130-mRNA-1

Gene Sequence	>Msa1000130 ATGGAGGAGGAAGGGGTCTTATTGTCGTTGAACAGAATAGCATGCAGAGGTATGAATCCTTACAAAGTTACTGTGGCACACTATTATGCTGTTCCCAATGAAAATGATTTTAGTGGAAATAAAATAGATATTGGACTTTCAATGGTTGTAAATATTTCCGTATCAAATAACATATTATTTGTTTCAGCGGAGGGTCCTGTTCAACACCCTTCTTCAACATTGCTTCGTATGATTAAACAAGTTTCTAGAACAGGGTATTGGAAGGGTTTTGAGACTACTCATGAGCATGATTCTGACACTGGGAGTGTAAATAACAGAGTAGCTGTTGTAAATAACAAAGAAAATATATTTTGA
Protein sequence	>Msa1000130 MEEEGVLLSLNRIACRGMNPYKVTVAHYYAVPNENDFSGNKIDIGLSMVVNISVSNNILFVSAEGPVQHPSSTLLRMIKQVSRTGYWKGFETTHEHDSDTGSVNNRVAVVNNKENIF*