Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000730 | XP_013453168.1 | 97.067 | 375 | 10 | 1 | 1 | 375 | 1 | 374 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000730 | sp|F4JNX2|SDEH4_ARATH | 32.771 | 415 | 201 | 9 | 17 | 374 | 55 | 448 | 2.11e-61 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000730 | A0A072UCK9 | 97.067 | 375 | 10 | 1 | 1 | 375 | 1 | 374 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1000730 | Msa1399140 | 0.871224 | 8.042969e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000730 | MtrunA17_Chr6g0486861 | 97.067 | 375 | 10 | 1 | 1 | 375 | 1 | 374 | 0.0 | 751 |
| Msa1000730 | MtrunA17_Chr8g0389881 | 68.766 | 381 | 107 | 7 | 1 | 375 | 1 | 375 | 0.0 | 506 |
| Msa1000730 | MtrunA17_Chr6g0486881 | 62.389 | 226 | 60 | 7 | 17 | 239 | 9 | 212 | 2.03e-81 | 248 |
| Msa1000730 | MtrunA17_Chr5g0405691 | 33.588 | 393 | 182 | 8 | 24 | 360 | 62 | 431 | 1.93e-61 | 204 |
| Msa1000730 | MtrunA17_Chr4g0037211 | 32.687 | 361 | 208 | 7 | 32 | 373 | 57 | 401 | 8.42e-59 | 196 |
| Msa1000730 | MtrunA17_Chr8g0371621 | 31.532 | 333 | 142 | 8 | 27 | 292 | 71 | 384 | 3.67e-37 | 139 |
| Msa1000730 | MtrunA17_Chr8g0361491 | 67.273 | 55 | 18 | 0 | 46 | 100 | 1 | 55 | 1.38e-20 | 84.3 |
| Msa1000730 | MtrunA17_Chr8g0371611 | 46.154 | 65 | 35 | 0 | 296 | 360 | 5 | 69 | 4.42e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000730 | AT4G15450.1 | 53.889 | 360 | 137 | 7 | 29 | 370 | 32 | 380 | 1.20e-131 | 382 |
| Msa1000730 | AT4G15450.2 | 52.778 | 360 | 135 | 8 | 29 | 370 | 32 | 374 | 3.28e-126 | 368 |
| Msa1000730 | AT3G21600.1 | 53.186 | 361 | 154 | 5 | 18 | 370 | 20 | 373 | 1.45e-124 | 364 |
| Msa1000730 | AT3G21600.2 | 54.545 | 341 | 142 | 4 | 18 | 352 | 20 | 353 | 2.70e-121 | 355 |
| Msa1000730 | AT3G21600.3 | 46.491 | 228 | 109 | 4 | 18 | 239 | 20 | 240 | 6.28e-65 | 207 |
| Msa1000730 | AT4G35985.1 | 32.771 | 415 | 201 | 9 | 17 | 374 | 55 | 448 | 2.14e-62 | 207 |
| Msa1000730 | AT3G51250.1 | 30.691 | 391 | 192 | 6 | 27 | 358 | 70 | 440 | 1.19e-58 | 197 |
| Msa1000730 | AT2G17840.1 | 32.593 | 405 | 191 | 12 | 11 | 360 | 54 | 431 | 2.03e-57 | 194 |
| Msa1000730 | AT4G35985.3 | 31.339 | 351 | 176 | 8 | 17 | 323 | 55 | 384 | 2.40e-47 | 166 |
| Msa1000730 | AT2G17840.2 | 30.163 | 368 | 175 | 12 | 11 | 323 | 54 | 394 | 2.39e-43 | 155 |
| Msa1000730 | AT3G51250.2 | 27.660 | 329 | 159 | 6 | 27 | 296 | 70 | 378 | 1.86e-38 | 142 |
| Msa1000730 | AT3G21590.3 | 43.210 | 162 | 74 | 4 | 168 | 323 | 69 | 218 | 4.95e-28 | 110 |
| Msa1000730 | AT4G35985.2 | 30.455 | 220 | 112 | 5 | 17 | 196 | 55 | 273 | 6.55e-26 | 106 |
| Msa1000730 | AT3G21590.1 | 39.130 | 138 | 66 | 4 | 168 | 299 | 69 | 194 | 9.85e-19 | 84.0 |
| Msa1000730 | AT3G21590.2 | 38.571 | 140 | 68 | 4 | 168 | 301 | 69 | 196 | 5.15e-18 | 82.4 |
Find 71 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATCTGAAGGACTATTT+AGG | 0.231243 | 6_4:+83980718 | None:intergenic |
| TTCCATTGGTGGTAGGGTTT+TGG | 0.236710 | 6_4:+83981910 | None:intergenic |
| TTAGCAACAATCATCAAAAT+AGG | 0.264832 | 6_4:-83981716 | Msa1000730:CDS |
| AACACCATTGAGTAAAGATT+TGG | 0.276866 | 6_4:+83980347 | None:intergenic |
| ATTCATTCTGTTGTTCTTTG+TGG | 0.319852 | 6_4:+83980638 | None:intergenic |
| AGTCCTTCAGATAAGATAAA+TGG | 0.321082 | 6_4:-83980711 | Msa1000730:CDS |
| TTTCTTGCTAAGGCTATTGC+TGG | 0.337164 | 6_4:-83981431 | Msa1000730:CDS |
| AACCATTCTTGTTGCAGCTT+GGG | 0.343724 | 6_4:+83979683 | None:intergenic |
| AGAAGAAGAGTGATCTTGAT+TGG | 0.343736 | 6_4:-83981490 | Msa1000730:CDS |
| CTCTTTGCCCCGGAAATGAT+AGG | 0.359023 | 6_4:+83978568 | None:intergenic |
| GAGAAATTTGGAGAAGCTAT+AGG | 0.362475 | 6_4:+83981878 | None:intergenic |
| AAAGATGGATCAAAATCTTA+TGG | 0.372864 | 6_4:-83978643 | Msa1000730:three_prime_UTR |
| CAACAAGAATGGTTTCTAAC+AGG | 0.380521 | 6_4:-83979674 | Msa1000730:intron |
| CCTCTCCTGGGAGCATCTTA+AGG | 0.391812 | 6_4:+83980265 | None:intergenic |
| AAGGCTATTGCTGGTGGAAC+TGG | 0.403743 | 6_4:-83981422 | Msa1000730:CDS |
| TATAGGTATGGGGAAGAAGC+AGG | 0.403987 | 6_4:-83978937 | Msa1000730:intron |
| GAAATTCTTATACAAATTCC+AGG | 0.407082 | 6_4:-83981830 | Msa1000730:CDS |
| GAAGCCAACAAGACCTCTCC+TGG | 0.411064 | 6_4:+83980252 | None:intergenic |
| TGCAGTAGAAGCTGGATTGA+TGG | 0.416271 | 6_4:+83978837 | None:intergenic |
| AGATTATCAACTTTCACAAC+TGG | 0.421713 | 6_4:+83981659 | None:intergenic |
| TAGTAATGCTTACACCAATC+AGG | 0.423191 | 6_4:-83981372 | Msa1000730:intron |
| GTTGTATATCCAAACCTGAT+TGG | 0.424947 | 6_4:+83981358 | None:intergenic |
| GCTCCCAGGAGAGGTCTTGT+TGG | 0.427347 | 6_4:-83980256 | Msa1000730:CDS |
| TGGAACTGGTCAGATTGTTA+AGG | 0.427763 | 6_4:-83981408 | Msa1000730:CDS |
| AATCAGCTTATTGAGAAAGA+TGG | 0.453599 | 6_4:-83978658 | Msa1000730:three_prime_UTR |
| TTTGTATTTAACATAGATGA+AGG | 0.459289 | 6_4:-83978749 | Msa1000730:three_prime_UTR |
| AAAGTAACACCATAGCTTAG+AGG | 0.460022 | 6_4:+83981596 | None:intergenic |
| AGGATGTAAAGTGTATCTAA+TGG | 0.460051 | 6_4:-83981810 | Msa1000730:CDS |
| AAACCATTCTTGTTGCAGCT+TGG | 0.465341 | 6_4:+83979682 | None:intergenic |
| AGTGTAGCTGCAGTAGAAGC+TGG | 0.473361 | 6_4:+83978829 | None:intergenic |
| CTTGCTAAGGCTATTGCTGG+TGG | 0.481145 | 6_4:-83981428 | Msa1000730:CDS |
| TTATCCAAATCTTTACTCAA+TGG | 0.483709 | 6_4:-83980351 | Msa1000730:CDS |
| ATAGGTATGGGGAAGAAGCA+GGG | 0.484548 | 6_4:-83978936 | Msa1000730:intron |
| CATTCTTGTTGCAGCTTGGG+AGG | 0.487768 | 6_4:+83979686 | None:intergenic |
| GAAGAAGAGTGATCTTGATT+GGG | 0.488678 | 6_4:-83981489 | Msa1000730:CDS |
| AAATCTTTACTCAATGGTGT+TGG | 0.490241 | 6_4:-83980345 | Msa1000730:CDS |
| GGAACTGGTCAGATTGTTAA+GGG | 0.499722 | 6_4:-83981407 | Msa1000730:CDS |
| GCTTAAATCTCAACCAGGGC+AGG | 0.499904 | 6_4:-83980292 | Msa1000730:CDS |
| TCTTGTTGCAGCTTGGGAGG+TGG | 0.500890 | 6_4:+83979689 | None:intergenic |
| ATTAGATACACTTTACATCC+TGG | 0.504957 | 6_4:+83981812 | None:intergenic |
| CTCCCAAGCTGCAACAAGAA+TGG | 0.507194 | 6_4:-83979685 | Msa1000730:CDS |
| CTCCAAAACCCTACCACCAA+TGG | 0.509528 | 6_4:-83981912 | Msa1000730:CDS |
| TAGGTATGGGGAAGAAGCAG+GGG | 0.514222 | 6_4:-83978935 | Msa1000730:CDS |
| GACATGCTGCTAATACTGCT+TGG | 0.519819 | 6_4:-83978882 | Msa1000730:CDS |
| TTTACTTACTGACTGCATCA+AGG | 0.520023 | 6_4:+83980229 | None:intergenic |
| ATCTTAAGGAATGCCTGCCC+TGG | 0.521001 | 6_4:+83980279 | None:intergenic |
| CCTGGTTGAGATTTAAGCAC+AGG | 0.526473 | 6_4:+83980297 | None:intergenic |
| CCACCATTTATCTTATCTGA+AGG | 0.528195 | 6_4:+83980708 | None:intergenic |
| TCTTTGCCCCGGAAATGATA+GGG | 0.535931 | 6_4:+83978569 | None:intergenic |
| ATTTGGAGAAGCTATAGGAA+TGG | 0.551970 | 6_4:+83981883 | None:intergenic |
| CCTGTGCTTAAATCTCAACC+AGG | 0.555632 | 6_4:-83980297 | Msa1000730:CDS |
| CTTTCACAGGCAATGAAAAG+AGG | 0.557368 | 6_4:+83981630 | None:intergenic |
| GATAAGATAAATGGTGGCAA+TGG | 0.557596 | 6_4:-83980702 | Msa1000730:CDS |
| GGCTCATGACCATCTTTCAC+AGG | 0.561567 | 6_4:+83981617 | None:intergenic |
| AAAGTGTATCTAATGGATGA+AGG | 0.562070 | 6_4:-83981803 | Msa1000730:CDS |
| TTACTTACTGACTGCATCAA+GGG | 0.565912 | 6_4:+83980230 | None:intergenic |
| GAATGAATGAAAACCTCATA+CGG | 0.566239 | 6_4:-83980623 | Msa1000730:intron |
| AAATACTTGTATAATTCTGA+AGG | 0.573146 | 6_4:+83978713 | None:intergenic |
| GGTCATGAGCCTCTAAGCTA+TGG | 0.578398 | 6_4:-83981605 | Msa1000730:CDS |
| GCATTCCTTAAGATGCTCCC+AGG | 0.593115 | 6_4:-83980270 | Msa1000730:CDS |
| CCTTAAGATGCTCCCAGGAG+AGG | 0.605060 | 6_4:-83980265 | Msa1000730:CDS |
| GATAAATGGTGGCAATGGCA+TGG | 0.606041 | 6_4:-83980697 | Msa1000730:CDS |
| GTCTTGGTTATATAGGTATG+GGG | 0.612475 | 6_4:-83978947 | Msa1000730:intron |
| GAGCATGTATTTGCAACTGC+AGG | 0.617638 | 6_4:-83978904 | Msa1000730:CDS |
| AAGCCAACAAGACCTCTCCT+GGG | 0.622823 | 6_4:+83980253 | None:intergenic |
| CCTTCAGATAAGATAAATGG+TGG | 0.636170 | 6_4:-83980708 | Msa1000730:CDS |
| ATTTAACATAGATGAAGGCG+TGG | 0.656200 | 6_4:-83978744 | Msa1000730:three_prime_UTR |
| ATGCTACCAGAAAATTCATG+TGG | 0.664358 | 6_4:+83981572 | None:intergenic |
| AATGGTGTTGGAATAGTGAG+TGG | 0.664953 | 6_4:-83980333 | Msa1000730:CDS |
| CTGTGCTTAAATCTCAACCA+GGG | 0.724504 | 6_4:-83980296 | Msa1000730:CDS |
| GAAGCACATGAACTTACACA+AGG | 0.731250 | 6_4:-83981779 | Msa1000730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTAAAATAGATTTGTT+TGG | - | chr6_4:83980782-83980801 | Msa1000730:intron | 10.0% |
| !!! | TTTTTCAATTAAAATAATGA+GGG | + | chr6_4:83980923-83980942 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAGAAATCAAAA+TGG | + | chr6_4:83981872-83981891 | None:intergenic | 10.0% |
| !!! | ATTACTTTTCAAACAAAAAT+AGG | + | chr6_4:83979381-83979400 | None:intergenic | 15.0% |
| !!! | TAATTTTGACAACATTATAA+TGG | + | chr6_4:83980313-83980332 | None:intergenic | 15.0% |
| !! | ACTAATTAATTGATTGATAT+TGG | + | chr6_4:83980353-83980372 | None:intergenic | 15.0% |
| !!! | TATCTTATATTTTTAACAAG+TGG | - | chr6_4:83980383-83980402 | Msa1000730:CDS | 15.0% |
| !!! | CTTTTTCAATTAAAATAATG+AGG | + | chr6_4:83980924-83980943 | None:intergenic | 15.0% |
| !!! | CTCATTATTTTAATTGAAAA+AGG | - | chr6_4:83980922-83980941 | Msa1000730:intron | 15.0% |
| !!! | TTCACTCTTTTTTATTTATT+TGG | + | chr6_4:83981160-83981179 | None:intergenic | 15.0% |
| !!! | ATATAAAACTTATTTCCTTT+TGG | - | chr6_4:83981664-83981683 | Msa1000730:CDS | 15.0% |
| !!! | ACTTAATTTTTTGTTTTTTG+TGG | - | chr6_4:83981765-83981784 | Msa1000730:CDS | 15.0% |
| !! | AAACACATAAAAAACAAACA+TGG | - | chr6_4:83978239-83978258 | Msa1000730:three_prime_UTR | 20.0% |
| !! | AACACATAAAAAACAAACAT+GGG | - | chr6_4:83978240-83978259 | Msa1000730:three_prime_UTR | 20.0% |
| !!! | TGATTATAATTTTCAACACA+AGG | + | chr6_4:83978732-83978751 | None:intergenic | 20.0% |
| !!! | TTATAATCATTTTCTTGCTA+AGG | - | chr6_4:83978743-83978762 | Msa1000730:three_prime_UTR | 20.0% |
| !! | TTAGAACTTTATATGAAAAC+AGG | + | chr6_4:83978929-83978948 | None:intergenic | 20.0% |
| !!! | GTTGTTTTCATTAGATATTT+TGG | - | chr6_4:83978949-83978968 | Msa1000730:intron | 20.0% |
| !! | TAGTATTTCCTTAAAACTTA+TGG | + | chr6_4:83979003-83979022 | None:intergenic | 20.0% |
| !!! | AAAACAAGAAAGTTTTAAGT+TGG | + | chr6_4:83979125-83979144 | None:intergenic | 20.0% |
| !! | GCTATTTGGTATAAAATTTA+GGG | + | chr6_4:83979183-83979202 | None:intergenic | 20.0% |
| !!! | TTAAAAGTTGTTTTGAAATC+AGG | - | chr6_4:83979421-83979440 | Msa1000730:intron | 20.0% |
| !! | TTACAATTTCAACTACTAAA+AGG | - | chr6_4:83980277-83980296 | Msa1000730:CDS | 20.0% |
| !! | GTTAAAAATATAAGATAGAG+TGG | + | chr6_4:83980380-83980399 | None:intergenic | 20.0% |
| !! | TATTTATGCTAATAATGTAG+TGG | + | chr6_4:83980574-83980593 | None:intergenic | 20.0% |
| !! | AACAATTAAAATTTCCTTTG+TGG | + | chr6_4:83980607-83980626 | None:intergenic | 20.0% |
| !!! | TTAAGGGTAAAATTGTTATT+TGG | + | chr6_4:83980650-83980669 | None:intergenic | 20.0% |
| !! | GAAGAAAAAATGTATATGTA+AGG | + | chr6_4:83980679-83980698 | None:intergenic | 20.0% |
| !!! | CTCTTTTTTATTTATTTGGT+TGG | + | chr6_4:83981156-83981175 | None:intergenic | 20.0% |
| !! | TTTGTATTTAACATAGATGA+AGG | - | chr6_4:83981435-83981454 | Msa1000730:CDS | 20.0% |
| !! | AAATACTTGTATAATTCTGA+AGG | + | chr6_4:83981474-83981493 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTAAGTCATCTTA+TGG | + | chr6_4:83981509-83981528 | None:intergenic | 20.0% |
| !!! | TTATCTTTTGATGTAAACTT+TGG | - | chr6_4:83981790-83981809 | Msa1000730:CDS | 20.0% |
| !!! | TTGAACACATTTTTTCTTAT+TGG | - | chr6_4:83981917-83981936 | Msa1000730:CDS | 20.0% |
| !!! | TTTGGTTTTGTTGAGAAATT+TGG | + | chr6_4:83978321-83978340 | None:intergenic | 25.0% |
| !! | ATTTCTTGTCTAAGAGTTTT+TGG | + | chr6_4:83978339-83978358 | None:intergenic | 25.0% |
| ! | GAAATTCTTATACAAATTCC+AGG | - | chr6_4:83978354-83978373 | Msa1000730:intron | 25.0% |
| ! | TTAGCAACAATCATCAAAAT+AGG | - | chr6_4:83978468-83978487 | Msa1000730:intron | 25.0% |
| !! | TTTGGTTGAATCTTTTCTTA+AGG | - | chr6_4:83978638-83978657 | Msa1000730:three_prime_UTR | 25.0% |
| !! | GAAAATTGCCATAAGTTTTA+AGG | - | chr6_4:83978992-83979011 | Msa1000730:intron | 25.0% |
| ! | CAAATATAGTAGTATTGTGT+TGG | - | chr6_4:83979057-83979076 | Msa1000730:intron | 25.0% |
| ! | GGCTATTTGGTATAAAATTT+AGG | + | chr6_4:83979184-83979203 | None:intergenic | 25.0% |
| !!! | TTTTAGCTCAATCTAAAAGT+TGG | + | chr6_4:83979205-83979224 | None:intergenic | 25.0% |
| !! | CTTTTAGATTGAGCTAAAAA+TGG | - | chr6_4:83979206-83979225 | Msa1000730:intron | 25.0% |
| !!! | TTTTGAAATCAGGTTCAAAA+AGG | - | chr6_4:83979431-83979450 | Msa1000730:intron | 25.0% |
| ! | AGATAGATATGATTAAAGTC+AGG | + | chr6_4:83979649-83979668 | None:intergenic | 25.0% |
| !! | CATAGTAAAACTTTTTACAC+CGG | + | chr6_4:83979707-83979726 | None:intergenic | 25.0% |
| ! | TTATCCAAATCTTTACTCAA+TGG | - | chr6_4:83979833-83979852 | Msa1000730:intron | 25.0% |
| ! | AATTAAAGTACGTCAATCAA+AGG | - | chr6_4:83980237-83980256 | Msa1000730:intron | 25.0% |
| ! | GTAGTTGAAATTGTAAAAGT+CGG | + | chr6_4:83980273-83980292 | None:intergenic | 25.0% |
| ! | TTTGAACAAGAATAATGTAG+TGG | + | chr6_4:83980542-83980561 | None:intergenic | 25.0% |
| ! | AATATATAGTTAGACCACAA+AGG | - | chr6_4:83980590-83980609 | Msa1000730:intron | 25.0% |
| ! | ATATGTAAGGCAATCATTAA+GGG | + | chr6_4:83980666-83980685 | None:intergenic | 25.0% |
| ! | TATATGTAAGGCAATCATTA+AGG | + | chr6_4:83980667-83980686 | None:intergenic | 25.0% |
| ! | TATAAGTTCATGAGAGAATA+TGG | + | chr6_4:83980811-83980830 | None:intergenic | 25.0% |
| ! | ATAATGAGGGTAAAAAATGA+GGG | + | chr6_4:83980910-83980929 | None:intergenic | 25.0% |
| ! | AATAATGAGGGTAAAAAATG+AGG | + | chr6_4:83980911-83980930 | None:intergenic | 25.0% |
| !!! | TGTTGAGTTTTTTAAGTGAT+TGG | + | chr6_4:83981019-83981038 | None:intergenic | 25.0% |
| ! | ACTTATATGTTATCCACTAT+AGG | - | chr6_4:83981063-83981082 | Msa1000730:intron | 25.0% |
| !! | CTAATATTTGCTTGCATTTT+TGG | + | chr6_4:83981392-83981411 | None:intergenic | 25.0% |
| ! | AAAGATGGATCAAAATCTTA+TGG | - | chr6_4:83981541-83981560 | Msa1000730:CDS | 25.0% |
| !! | GAACTCAATTATTAAGCTTT+TGG | - | chr6_4:83981638-83981657 | Msa1000730:CDS | 25.0% |
| !! | TAAAACTTATTTCCTTTTGG+TGG | - | chr6_4:83981667-83981686 | Msa1000730:CDS | 25.0% |
| !!! | ATAGGAATGGTTTTTTCCAT+TGG | + | chr6_4:83978291-83978310 | None:intergenic | 30.0% |
| ATTAGATACACTTTACATCC+TGG | + | chr6_4:83978375-83978394 | None:intergenic | 30.0% | |
| AGGATGTAAAGTGTATCTAA+TGG | - | chr6_4:83978374-83978393 | Msa1000730:intron | 30.0% | |
| ! | AAAGTGTATCTAATGGATGA+AGG | - | chr6_4:83978381-83978400 | Msa1000730:intron | 30.0% |
| !! | ACTGGTTCATCTTTTGTTAA+AGG | + | chr6_4:83978510-83978529 | None:intergenic | 30.0% |
| AGATTATCAACTTTCACAAC+TGG | + | chr6_4:83978528-83978547 | None:intergenic | 30.0% | |
| ! | ACTTTTCCACATGAATTTTC+TGG | - | chr6_4:83978606-83978625 | Msa1000730:three_prime_UTR | 30.0% |
| ATATTTGCTTCTTTAACCAC+CGG | + | chr6_4:83979044-83979063 | None:intergenic | 30.0% | |
| TTCTTTAGCCAGTAAAACAT+CGG | - | chr6_4:83979148-83979167 | Msa1000730:intron | 30.0% | |
| CAATCTAAAAGTTGGCTATT+TGG | + | chr6_4:83979197-83979216 | None:intergenic | 30.0% | |
| TCTTATCTGAAGGACTATTT+AGG | + | chr6_4:83979469-83979488 | None:intergenic | 30.0% | |
| AGTCCTTCAGATAAGATAAA+TGG | - | chr6_4:83979473-83979492 | Msa1000730:intron | 30.0% | |
| ATTCATTCTGTTGTTCTTTG+TGG | + | chr6_4:83979549-83979568 | None:intergenic | 30.0% | |
| GAATGAATGAAAACCTCATA+CGG | - | chr6_4:83979561-83979580 | Msa1000730:intron | 30.0% | |
| !! | GTATTTTTGAATACCGTATG+AGG | + | chr6_4:83979577-83979596 | None:intergenic | 30.0% |
| CATGAAAAACTAGTTAGAGT+CGG | + | chr6_4:83979768-83979787 | None:intergenic | 30.0% | |
| AACACCATTGAGTAAAGATT+TGG | + | chr6_4:83979840-83979859 | None:intergenic | 30.0% | |
| AAATCTTTACTCAATGGTGT+TGG | - | chr6_4:83979839-83979858 | Msa1000730:intron | 30.0% | |
| !! | TACTCTAAGATCTTCAACTT+TGG | + | chr6_4:83979996-83980015 | None:intergenic | 30.0% |
| !!! | AACCACGATTTGTTTTAAGT+CGG | - | chr6_4:83980135-83980154 | Msa1000730:intron | 30.0% |
| AATCAAATAGAAGACTGAAC+AGG | + | chr6_4:83980197-83980216 | None:intergenic | 30.0% | |
| CAATTTCAACTACTAAAAGG+TGG | - | chr6_4:83980280-83980299 | Msa1000730:CDS | 30.0% | |
| ! | ATCTTTTAATGTCACAGACA+AGG | - | chr6_4:83980430-83980449 | Msa1000730:intron | 30.0% |
| AAATAGCCTATATCTGATAG+CGG | + | chr6_4:83981094-83981113 | None:intergenic | 30.0% | |
| !! | TGGTTGGTAAATAATTAACG+TGG | + | chr6_4:83981140-83981159 | None:intergenic | 30.0% |
| TGTCTTGGTTATATAGGTAT+GGG | - | chr6_4:83981236-83981255 | Msa1000730:intron | 30.0% | |
| AATCAGCTTATTGAGAAAGA+TGG | - | chr6_4:83981526-83981545 | Msa1000730:CDS | 30.0% | |
| ACCAATCGTGAAATTGATAA+GGG | + | chr6_4:83981716-83981735 | None:intergenic | 30.0% | |
| GTGTTCAATAGACAATGATA+GGG | + | chr6_4:83981905-83981924 | None:intergenic | 30.0% | |
| TGTGTTCAATAGACAATGAT+AGG | + | chr6_4:83981906-83981925 | None:intergenic | 30.0% | |
| ATTTGGAGAAGCTATAGGAA+TGG | + | chr6_4:83978304-83978323 | None:intergenic | 35.0% | |
| GAGAAATTTGGAGAAGCTAT+AGG | + | chr6_4:83978309-83978328 | None:intergenic | 35.0% | |
| ! | TTTTCATTGCCTGTGAAAGA+TGG | - | chr6_4:83978558-83978577 | Msa1000730:intron | 35.0% |
| AAAGTAACACCATAGCTTAG+AGG | + | chr6_4:83978591-83978610 | None:intergenic | 35.0% | |
| ATGCTACCAGAAAATTCATG+TGG | + | chr6_4:83978615-83978634 | None:intergenic | 35.0% | |
| !! | ACATGAATTTTCTGGTAGCA+TGG | - | chr6_4:83978614-83978633 | Msa1000730:three_prime_UTR | 35.0% |
| AGAAGAAGAGTGATCTTGAT+TGG | - | chr6_4:83978694-83978713 | Msa1000730:three_prime_UTR | 35.0% | |
| GAAGAAGAGTGATCTTGATT+GGG | - | chr6_4:83978695-83978714 | Msa1000730:three_prime_UTR | 35.0% | |
| TAGTAATGCTTACACCAATC+AGG | - | chr6_4:83978812-83978831 | Msa1000730:CDS | 35.0% | |
| GTTGTATATCCAAACCTGAT+TGG | + | chr6_4:83978829-83978848 | None:intergenic | 35.0% | |
| !! | GATGTTTTACTGGCTAAAGA+AGG | + | chr6_4:83979149-83979168 | None:intergenic | 35.0% |
| ! | TATGCTAACCGATGTTTTAC+TGG | + | chr6_4:83979159-83979178 | None:intergenic | 35.0% |
| !! | TCATTTTGATCAAGTGATCG+TGG | + | chr6_4:83979249-83979268 | None:intergenic | 35.0% |
| AAAAGTCATGCAGTTTCATG+CGG | + | chr6_4:83979353-83979372 | None:intergenic | 35.0% | |
| TGAAATCAGGTTCAAAAAGG+AGG | - | chr6_4:83979434-83979453 | Msa1000730:intron | 35.0% | |
| CCACCATTTATCTTATCTGA+AGG | + | chr6_4:83979479-83979498 | None:intergenic | 35.0% | |
| CCTTCAGATAAGATAAATGG+TGG | - | chr6_4:83979476-83979495 | Msa1000730:intron | 35.0% | |
| GATAAGATAAATGGTGGCAA+TGG | - | chr6_4:83979482-83979501 | Msa1000730:intron | 35.0% | |
| TGAGACAGTGTAAAATAGTC+AGG | + | chr6_4:83979599-83979618 | None:intergenic | 35.0% | |
| CTGAAAAGTCATACGAATGA+TGG | - | chr6_4:83979667-83979686 | Msa1000730:intron | 35.0% | |
| ! | GATGGTTTGTAAATGATTGC+CGG | - | chr6_4:83979685-83979704 | Msa1000730:CDS | 35.0% |
| ! | TTACTTACTGACTGCATCAA+GGG | + | chr6_4:83979957-83979976 | None:intergenic | 35.0% |
| ! | TTTACTTACTGACTGCATCA+AGG | + | chr6_4:83979958-83979977 | None:intergenic | 35.0% |
| !!! | TTGTTTTAAGTCGGTGACAA+CGG | - | chr6_4:83980144-83980163 | Msa1000730:intron | 35.0% |
| CAACAAGAATGGTTTCTAAC+AGG | - | chr6_4:83980510-83980529 | Msa1000730:intron | 35.0% | |
| GACACACACTCTTGTTAATT+AGG | + | chr6_4:83981220-83981239 | None:intergenic | 35.0% | |
| ! | ATTAACAAGAGTGTGTGTCT+TGG | - | chr6_4:83981221-83981240 | Msa1000730:intron | 35.0% |
| AGTGTGTGTCTTGGTTATAT+AGG | - | chr6_4:83981230-83981249 | Msa1000730:intron | 35.0% | |
| GTGTCTTGGTTATATAGGTA+TGG | - | chr6_4:83981235-83981254 | Msa1000730:intron | 35.0% | |
| GTCTTGGTTATATAGGTATG+GGG | - | chr6_4:83981237-83981256 | Msa1000730:intron | 35.0% | |
| ATTTAACATAGATGAAGGCG+TGG | - | chr6_4:83981440-83981459 | Msa1000730:CDS | 35.0% | |
| ATTTGCTTTACACCACCAAA+AGG | + | chr6_4:83981682-83981701 | None:intergenic | 35.0% | |
| !! | TTTGGTGGTGTAAAGCAAAT+TGG | - | chr6_4:83981682-83981701 | Msa1000730:CDS | 35.0% |
| !! | TTGGTGGTGTAAAGCAAATT+GGG | - | chr6_4:83981683-83981702 | Msa1000730:CDS | 35.0% |
| TCCCTTATCAATTTCACGAT+TGG | - | chr6_4:83981712-83981731 | Msa1000730:CDS | 35.0% | |
| CACCAATCGTGAAATTGATA+AGG | + | chr6_4:83981717-83981736 | None:intergenic | 35.0% | |
| CAAAAAATTAAGTACCACCC+AGG | + | chr6_4:83981758-83981777 | None:intergenic | 35.0% | |
| AAACTTTGGTCTATTCTCTC+TGG | - | chr6_4:83981804-83981823 | Msa1000730:CDS | 35.0% | |
| !!! | GGTTTTTTCCATTGGTGGTA+GGG | + | chr6_4:83978283-83978302 | None:intergenic | 40.0% |
| !!! | TGGTTTTTTCCATTGGTGGT+AGG | + | chr6_4:83978284-83978303 | None:intergenic | 40.0% |
| !!! | GGAATGGTTTTTTCCATTGG+TGG | + | chr6_4:83978288-83978307 | None:intergenic | 40.0% |
| GAAGCACATGAACTTACACA+AGG | - | chr6_4:83978405-83978424 | Msa1000730:intron | 40.0% | |
| CTTTCACAGGCAATGAAAAG+AGG | + | chr6_4:83978557-83978576 | None:intergenic | 40.0% | |
| !! | ATTTTCTGGTAGCATGGCTT+TGG | - | chr6_4:83978620-83978639 | Msa1000730:three_prime_UTR | 40.0% |
| TTTCTTGCTAAGGCTATTGC+TGG | - | chr6_4:83978753-83978772 | Msa1000730:three_prime_UTR | 40.0% | |
| TGGAACTGGTCAGATTGTTA+AGG | - | chr6_4:83978776-83978795 | Msa1000730:exon | 40.0% | |
| GGAACTGGTCAGATTGTTAA+GGG | - | chr6_4:83978777-83978796 | Msa1000730:exon | 40.0% | |
| ATGCTTACACCAATCAGGTT+TGG | - | chr6_4:83978817-83978836 | Msa1000730:CDS | 40.0% | |
| ! | AATGGTGTTGGAATAGTGAG+TGG | - | chr6_4:83979851-83979870 | Msa1000730:intron | 40.0% |
| CTGTGCTTAAATCTCAACCA+GGG | - | chr6_4:83979888-83979907 | Msa1000730:intron | 40.0% | |
| TAGTGTTTACAGAACCTGAC+CGG | - | chr6_4:83980067-83980086 | Msa1000730:intron | 40.0% | |
| ! | TGGTCGGTTCAATTAGGAAT+CGG | - | chr6_4:83980092-83980111 | Msa1000730:intron | 40.0% |
| !! | CACCGACTTAAAACAAATCG+TGG | + | chr6_4:83980140-83980159 | None:intergenic | 40.0% |
| AACCATTCTTGTTGCAGCTT+GGG | + | chr6_4:83980504-83980523 | None:intergenic | 40.0% | |
| AAACCATTCTTGTTGCAGCT+TGG | + | chr6_4:83980505-83980524 | None:intergenic | 40.0% | |
| AACATCGACCCTATCATTTC+CGG | - | chr6_4:83981607-83981626 | Msa1000730:CDS | 40.0% | |
| TAATTGAGTTCTCTTTGCCC+CGG | + | chr6_4:83981629-83981648 | None:intergenic | 40.0% | |
| !! | TTCCATTGGTGGTAGGGTTT+TGG | + | chr6_4:83978277-83978296 | None:intergenic | 45.0% |
| AAATACTAACCAATGCCCGC+AGG | - | chr6_4:83979015-83979034 | Msa1000730:intron | 45.0% | |
| AATACTAACCAATGCCCGCA+GGG | - | chr6_4:83979016-83979035 | Msa1000730:intron | 45.0% | |
| GATAAATGGTGGCAATGGCA+TGG | - | chr6_4:83979487-83979506 | Msa1000730:intron | 45.0% | |
| CCTGGTTGAGATTTAAGCAC+AGG | + | chr6_4:83979890-83979909 | None:intergenic | 45.0% | |
| CCTGTGCTTAAATCTCAACC+AGG | - | chr6_4:83979887-83979906 | Msa1000730:intron | 45.0% | |
| GAACAGCGATTCAACCTAGA+TGG | - | chr6_4:83980166-83980185 | Msa1000730:intron | 45.0% | |
| ! | CTGAACAGGTTGAACCATCT+AGG | + | chr6_4:83980183-83980202 | None:intergenic | 45.0% |
| !!! | CAAGGTTTTTGAAGCAGCAG+AGG | - | chr6_4:83980448-83980467 | Msa1000730:intron | 45.0% |
| TATAGGTATGGGGAAGAAGC+AGG | - | chr6_4:83981247-83981266 | Msa1000730:intron | 45.0% | |
| ATAGGTATGGGGAAGAAGCA+GGG | - | chr6_4:83981248-83981267 | Msa1000730:intron | 45.0% | |
| GAGCATGTATTTGCAACTGC+AGG | - | chr6_4:83981280-83981299 | Msa1000730:intron | 45.0% | |
| GACATGCTGCTAATACTGCT+TGG | - | chr6_4:83981302-83981321 | Msa1000730:intron | 45.0% | |
| TGCAGTAGAAGCTGGATTGA+TGG | + | chr6_4:83981350-83981369 | None:intergenic | 45.0% | |
| ACATCGACCCTATCATTTCC+GGG | - | chr6_4:83981608-83981627 | Msa1000730:CDS | 45.0% | |
| TCTTTGCCCCGGAAATGATA+GGG | + | chr6_4:83981618-83981637 | None:intergenic | 45.0% | |
| ACAAACTATCCCCCAGCATA+AGG | + | chr6_4:83981834-83981853 | None:intergenic | 45.0% | |
| ! | TATGCTGGGGGATAGTTTGT+TGG | - | chr6_4:83981834-83981853 | Msa1000730:CDS | 45.0% |
| CTCCAAAACCCTACCACCAA+TGG | - | chr6_4:83978272-83978291 | Msa1000730:three_prime_UTR | 50.0% | |
| GGCTCATGACCATCTTTCAC+AGG | + | chr6_4:83978570-83978589 | None:intergenic | 50.0% | |
| GGTCATGAGCCTCTAAGCTA+TGG | - | chr6_4:83978579-83978598 | Msa1000730:intron | 50.0% | |
| CTTGCTAAGGCTATTGCTGG+TGG | - | chr6_4:83978756-83978775 | Msa1000730:three_prime_UTR | 50.0% | |
| AAGGCTATTGCTGGTGGAAC+TGG | - | chr6_4:83978762-83978781 | Msa1000730:three_prime_UTR | 50.0% | |
| GCTTAAATCTCAACCAGGGC+AGG | - | chr6_4:83979892-83979911 | Msa1000730:intron | 50.0% | |
| ATCTTAAGGAATGCCTGCCC+TGG | + | chr6_4:83979908-83979927 | None:intergenic | 50.0% | |
| GCATTCCTTAAGATGCTCCC+AGG | - | chr6_4:83979914-83979933 | Msa1000730:intron | 50.0% | |
| AAGCCAACAAGACCTCTCCT+GGG | + | chr6_4:83979934-83979953 | None:intergenic | 50.0% | |
| TTTACAGAACCTGACCGGAC+TGG | - | chr6_4:83980072-83980091 | Msa1000730:intron | 50.0% | |
| CCTAATTGAACCGACCAGTC+CGG | + | chr6_4:83980089-83980108 | None:intergenic | 50.0% | |
| CATTCTTGTTGCAGCTTGGG+AGG | + | chr6_4:83980501-83980520 | None:intergenic | 50.0% | |
| CTCCCAAGCTGCAACAAGAA+TGG | - | chr6_4:83980499-83980518 | Msa1000730:intron | 50.0% | |
| GCACGTCCGCTATCAGATAT+AGG | - | chr6_4:83981085-83981104 | Msa1000730:intron | 50.0% | |
| TAGGTATGGGGAAGAAGCAG+GGG | - | chr6_4:83981249-83981268 | Msa1000730:intron | 50.0% | |
| AGTGTAGCTGCAGTAGAAGC+TGG | + | chr6_4:83981358-83981377 | None:intergenic | 50.0% | |
| CATCGACCCTATCATTTCCG+GGG | - | chr6_4:83981609-83981628 | Msa1000730:CDS | 50.0% | |
| CTCTTTGCCCCGGAAATGAT+AGG | + | chr6_4:83981619-83981638 | None:intergenic | 50.0% | |
| !! | ACGATTGGTGCCAAAACCCT+TGG | - | chr6_4:83981727-83981746 | Msa1000730:CDS | 50.0% |
| CAAAACCCTTGGTTGTGCCT+GGG | - | chr6_4:83981738-83981757 | Msa1000730:CDS | 50.0% | |
| TCTCTGGCACACCTTATGCT+GGG | - | chr6_4:83981820-83981839 | Msa1000730:CDS | 50.0% | |
| !! | CCTCTCCTGGGAGCATCTTA+AGG | + | chr6_4:83979922-83979941 | None:intergenic | 55.0% |
| CCTTAAGATGCTCCCAGGAG+AGG | - | chr6_4:83979919-83979938 | Msa1000730:intron | 55.0% | |
| GAAGCCAACAAGACCTCTCC+TGG | + | chr6_4:83979935-83979954 | None:intergenic | 55.0% | |
| !! | CCGGACTGGTCGGTTCAATT+AGG | - | chr6_4:83980086-83980105 | Msa1000730:intron | 55.0% |
| TCTTGTTGCAGCTTGGGAGG+TGG | + | chr6_4:83980498-83980517 | None:intergenic | 55.0% | |
| !! | GATAGCGGACGTGCCTATAG+TGG | + | chr6_4:83981079-83981098 | None:intergenic | 55.0% |
| ! | CCAGGCACAACCAAGGGTTT+TGG | + | chr6_4:83981740-83981759 | None:intergenic | 55.0% |
| CCAAAACCCTTGGTTGTGCC+TGG | - | chr6_4:83981737-83981756 | Msa1000730:CDS | 55.0% | |
| TACCACCCAGGCACAACCAA+GGG | + | chr6_4:83981746-83981765 | None:intergenic | 55.0% | |
| CTCTCTGGCACACCTTATGC+TGG | - | chr6_4:83981819-83981838 | Msa1000730:CDS | 55.0% | |
| CTCTGGCACACCTTATGCTG+GGG | - | chr6_4:83981821-83981840 | Msa1000730:CDS | 55.0% | |
| TCTGGCACACCTTATGCTGG+GGG | - | chr6_4:83981822-83981841 | Msa1000730:CDS | 55.0% | |
| TTTAACCACCGGTGCCCTGC+GGG | + | chr6_4:83979033-83979052 | None:intergenic | 60.0% | |
| CTTTAACCACCGGTGCCCTG+CGG | + | chr6_4:83979034-83979053 | None:intergenic | 60.0% | |
| ! | GCTCCCAGGAGAGGTCTTGT+TGG | - | chr6_4:83979928-83979947 | Msa1000730:intron | 60.0% |
| !! | CAGAACCTGACCGGACTGGT+CGG | - | chr6_4:83980076-83980095 | Msa1000730:intron | 60.0% |
| TTGAACCGACCAGTCCGGTC+AGG | + | chr6_4:83980084-83980103 | None:intergenic | 60.0% | |
| AACCCTTGGTTGTGCCTGGG+TGG | - | chr6_4:83981741-83981760 | Msa1000730:CDS | 60.0% | |
| GTACCACCCAGGCACAACCA+AGG | + | chr6_4:83981747-83981766 | None:intergenic | 60.0% | |
| AACCAATGCCCGCAGGGCAC+CGG | - | chr6_4:83979022-83979041 | Msa1000730:intron | 65.0% | |
| CACCGGTGCCCTGCGGGCAT+TGG | + | chr6_4:83979027-83979046 | None:intergenic | 75.0% | |
| !! | CAATGCCCGCAGGGCACCGG+TGG | - | chr6_4:83979025-83979044 | Msa1000730:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 83978235 | 83981971 | 83978235 | ID=Msa1000730;Name=Msa1000730 |
| chr6_4 | mRNA | 83978235 | 83981971 | 83978235 | ID=Msa1000730-mRNA-1;Parent=Msa1000730;Name=Msa1000730-mRNA-1;_AED=0.14;_eAED=0.14;_QI=23|1|1|1|0.8|0.66|6|273|375 |
| chr6_4 | exon | 83978235 | 83978295 | 83978235 | ID=Msa1000730-mRNA-1:exon:16279;Parent=Msa1000730-mRNA-1 |
| chr6_4 | exon | 83978583 | 83978954 | 83978583 | ID=Msa1000730-mRNA-1:exon:16278;Parent=Msa1000730-mRNA-1 |
| chr6_4 | exon | 83979675 | 83979759 | 83979675 | ID=Msa1000730-mRNA-1:exon:16277;Parent=Msa1000730-mRNA-1 |
| chr6_4 | exon | 83980238 | 83980404 | 83980238 | ID=Msa1000730-mRNA-1:exon:16276;Parent=Msa1000730-mRNA-1 |
| chr6_4 | exon | 83980624 | 83980763 | 83980624 | ID=Msa1000730-mRNA-1:exon:16275;Parent=Msa1000730-mRNA-1 |
| chr6_4 | exon | 83981373 | 83981971 | 83981373 | ID=Msa1000730-mRNA-1:exon:16274;Parent=Msa1000730-mRNA-1 |
| chr6_4 | five_prime_UTR | 83981949 | 83981971 | 83981949 | ID=Msa1000730-mRNA-1:five_prime_utr;Parent=Msa1000730-mRNA-1 |
| chr6_4 | CDS | 83981373 | 83981948 | 83981373 | ID=Msa1000730-mRNA-1:cds;Parent=Msa1000730-mRNA-1 |
| chr6_4 | CDS | 83980624 | 83980763 | 83980624 | ID=Msa1000730-mRNA-1:cds;Parent=Msa1000730-mRNA-1 |
| chr6_4 | CDS | 83980238 | 83980404 | 83980238 | ID=Msa1000730-mRNA-1:cds;Parent=Msa1000730-mRNA-1 |
| chr6_4 | CDS | 83979675 | 83979759 | 83979675 | ID=Msa1000730-mRNA-1:cds;Parent=Msa1000730-mRNA-1 |
| chr6_4 | CDS | 83978795 | 83978954 | 83978795 | ID=Msa1000730-mRNA-1:cds;Parent=Msa1000730-mRNA-1 |
| chr6_4 | three_prime_UTR | 83978583 | 83978794 | 83978583 | ID=Msa1000730-mRNA-1:three_prime_utr;Parent=Msa1000730-mRNA-1 |
| chr6_4 | three_prime_UTR | 83978235 | 83978295 | 83978235 | ID=Msa1000730-mRNA-1:three_prime_utr;Parent=Msa1000730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
