Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399140 | XP_013453168.1 | 96.800 | 375 | 11 | 1 | 1 | 375 | 1 | 374 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399140 | sp|F4JNX2|SDEH4_ARATH | 32.771 | 415 | 201 | 9 | 17 | 374 | 55 | 448 | 5.25e-62 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399140 | A0A072UCK9 | 96.800 | 375 | 11 | 1 | 1 | 375 | 1 | 374 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa1399140 | -0.802518 | 5.400683e-49 | -8.615850e-47 |
| Msa0005270 | Msa1399140 | 0.811732 | 6.041409e-51 | -8.615850e-47 |
| Msa0014570 | Msa1399140 | 0.800502 | 1.398729e-48 | -8.615850e-47 |
| Msa0022750 | Msa1399140 | -0.803711 | 3.060069e-49 | -8.615850e-47 |
| Msa0048000 | Msa1399140 | 0.814264 | 1.683377e-51 | -8.615850e-47 |
| Msa0056450 | Msa1399140 | 0.800980 | 1.117043e-48 | -8.615850e-47 |
| Msa0077450 | Msa1399140 | 0.810589 | 1.069380e-50 | -8.615850e-47 |
| Msa0085370 | Msa1399140 | 0.804506 | 2.091201e-49 | -8.615850e-47 |
| Msa0108390 | Msa1399140 | 0.826706 | 2.341438e-54 | -8.615850e-47 |
| Msa1357890 | Msa1399140 | 0.805382 | 1.371658e-49 | -8.615850e-47 |
| Msa1359920 | Msa1399140 | 0.802376 | 5.777970e-49 | -8.615850e-47 |
| Msa1366300 | Msa1399140 | 0.806504 | 7.965003e-50 | -8.615850e-47 |
| Msa1379590 | Msa1399140 | 0.815197 | 1.045769e-51 | -8.615850e-47 |
| Msa1396780 | Msa1399140 | 0.807740 | 4.361126e-50 | -8.615850e-47 |
| Msa1398090 | Msa1399140 | 0.809090 | 2.246958e-50 | -8.615850e-47 |
| Msa1399140 | Msa1404540 | 0.805517 | 1.284961e-49 | -8.615850e-47 |
| Msa1399140 | Msa1410210 | 0.800956 | 1.129984e-48 | -8.615850e-47 |
| Msa1399140 | Msa1424640 | 0.813992 | 1.932983e-51 | -8.615850e-47 |
| Msa1399140 | Msa1424680 | 0.802057 | 6.720298e-49 | -8.615850e-47 |
| Msa1399140 | Msa1431060 | 0.813127 | 2.996095e-51 | -8.615850e-47 |
| Msa1399140 | Msa1433220 | 0.810907 | 9.124522e-51 | -8.615850e-47 |
| Msa1399140 | Msa1435400 | 0.808684 | 2.743630e-50 | -8.615850e-47 |
| Msa1399140 | Msa1457430 | 0.811697 | 6.148942e-51 | -8.615850e-47 |
| Msa0661320 | Msa1399140 | 0.805069 | 1.595187e-49 | -8.615850e-47 |
| Msa0702080 | Msa1399140 | 0.816798 | 4.592639e-52 | -8.615850e-47 |
| Msa0702110 | Msa1399140 | 0.819905 | 9.085205e-53 | -8.615850e-47 |
| Msa0721280 | Msa1399140 | 0.806575 | 7.697432e-50 | -8.615850e-47 |
| Msa0831590 | Msa1399140 | 0.804523 | 2.073571e-49 | -8.615850e-47 |
| Msa0170140 | Msa1399140 | 0.800153 | 1.647244e-48 | -8.615850e-47 |
| Msa0200560 | Msa1399140 | 0.820113 | 8.143259e-53 | -8.615850e-47 |
| Msa1240510 | Msa1399140 | 0.804616 | 1.982794e-49 | -8.615850e-47 |
| Msa1259640 | Msa1399140 | 0.808788 | 2.607665e-50 | -8.615850e-47 |
| Msa1329790 | Msa1399140 | 0.801404 | 9.151500e-49 | -8.615850e-47 |
| Msa1333730 | Msa1399140 | 0.800006 | 1.764879e-48 | -8.615850e-47 |
| Msa1338250 | Msa1399140 | 0.812682 | 3.748793e-51 | -8.615850e-47 |
| Msa0381000 | Msa1399140 | 0.807509 | 4.881350e-50 | -8.615850e-47 |
| Msa0390960 | Msa1399140 | 0.806474 | 8.082803e-50 | -8.615850e-47 |
| Msa0394260 | Msa1399140 | 0.811630 | 6.358403e-51 | -8.615850e-47 |
| Msa0403660 | Msa1399140 | 0.827721 | 1.337777e-54 | -8.615850e-47 |
| Msa0417650 | Msa1399140 | 0.800748 | 1.245862e-48 | -8.615850e-47 |
| Msa0430870 | Msa1399140 | 0.811746 | 6.000019e-51 | -8.615850e-47 |
| Msa0455740 | Msa1399140 | 0.803312 | 3.701312e-49 | -8.615850e-47 |
| Msa0981310 | Msa1399140 | 0.805024 | 1.629417e-49 | -8.615850e-47 |
| Msa1000730 | Msa1399140 | 0.871224 | 8.042969e-67 | -8.615850e-47 |
| Msa1021510 | Msa1399140 | 0.812742 | 3.636941e-51 | -8.615850e-47 |
| Msa1031930 | Msa1399140 | 0.810378 | 1.187499e-50 | -8.615850e-47 |
| Msa1032170 | Msa1399140 | 0.810469 | 1.134852e-50 | -8.615850e-47 |
| Msa1105500 | Msa1399140 | 0.813289 | 2.759897e-51 | -8.615850e-47 |
| Msa0247170 | Msa1399140 | 0.815651 | 8.290287e-52 | -8.615850e-47 |
| Msa0260810 | Msa1399140 | 0.810467 | 1.136376e-50 | -8.615850e-47 |
| Msa0277420 | Msa1399140 | 0.800324 | 1.520212e-48 | -8.615850e-47 |
| Msa0281640 | Msa1399140 | 0.805519 | 1.283399e-49 | -8.615850e-47 |
| Msa0285450 | Msa1399140 | 0.814098 | 1.831843e-51 | -8.615850e-47 |
| Msa0317270 | Msa1399140 | 0.809337 | 1.989105e-50 | -8.615850e-47 |
| Msa0320800 | Msa1399140 | 0.813489 | 2.493954e-51 | -8.615850e-47 |
| Msa1127770 | Msa1399140 | 0.802887 | 4.531405e-49 | -8.615850e-47 |
| Msa1130270 | Msa1399140 | -0.805860 | 1.088842e-49 | -8.615850e-47 |
| Msa1162550 | Msa1399140 | -0.802922 | 4.456660e-49 | -8.615850e-47 |
| Msa0484780 | Msa1399140 | 0.805200 | 1.497128e-49 | -8.615850e-47 |
| Msa0506830 | Msa1399140 | 0.801261 | 9.789739e-49 | -8.615850e-47 |
| Msa0572420 | Msa1399140 | 0.806929 | 6.479430e-50 | -8.615850e-47 |
| Msa0580180 | Msa1399140 | 0.807391 | 5.171940e-50 | -8.615850e-47 |
| Msa0844240 | Msa1399140 | 0.801138 | 1.037139e-48 | -8.615850e-47 |
| Msa0868160 | Msa1399140 | 0.805339 | 1.399969e-49 | -8.615850e-47 |
| Msa0870530 | Msa1399140 | 0.808959 | 2.396954e-50 | -8.615850e-47 |
| Msa0882510 | Msa1399140 | 0.809274 | 2.052153e-50 | -8.615850e-47 |
| Msa0898660 | Msa1399140 | 0.806643 | 7.446429e-50 | -8.615850e-47 |
| Msa0903700 | Msa1399140 | 0.812270 | 4.612314e-51 | -8.615850e-47 |
| Msa0926370 | Msa1399140 | 0.831473 | 1.636175e-55 | -8.615850e-47 |
| Msa0962840 | Msa1399140 | 0.817903 | 2.590461e-52 | -8.615850e-47 |
| Msa0973150 | Msa1399140 | 0.814258 | 1.688254e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399140 | MtrunA17_Chr6g0486861 | 96.800 | 375 | 11 | 1 | 1 | 375 | 1 | 374 | 0.0 | 748 |
| Msa1399140 | MtrunA17_Chr8g0389881 | 68.766 | 381 | 107 | 7 | 1 | 375 | 1 | 375 | 0.0 | 508 |
| Msa1399140 | MtrunA17_Chr6g0486881 | 62.389 | 226 | 60 | 7 | 17 | 239 | 9 | 212 | 1.65e-81 | 248 |
| Msa1399140 | MtrunA17_Chr5g0405691 | 33.588 | 393 | 182 | 8 | 24 | 360 | 62 | 431 | 5.47e-62 | 206 |
| Msa1399140 | MtrunA17_Chr4g0037211 | 32.687 | 361 | 208 | 7 | 32 | 373 | 57 | 401 | 3.84e-59 | 197 |
| Msa1399140 | MtrunA17_Chr8g0371621 | 31.532 | 333 | 142 | 8 | 27 | 292 | 71 | 384 | 1.39e-37 | 140 |
| Msa1399140 | MtrunA17_Chr8g0361491 | 67.273 | 55 | 18 | 0 | 46 | 100 | 1 | 55 | 1.38e-20 | 84.3 |
| Msa1399140 | MtrunA17_Chr8g0371611 | 46.154 | 65 | 35 | 0 | 296 | 360 | 5 | 69 | 4.01e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399140 | AT4G15450.1 | 53.889 | 360 | 137 | 7 | 29 | 370 | 32 | 380 | 3.78e-132 | 383 |
| Msa1399140 | AT4G15450.2 | 52.778 | 360 | 135 | 8 | 29 | 370 | 32 | 374 | 1.37e-126 | 369 |
| Msa1399140 | AT3G21600.1 | 53.186 | 361 | 154 | 5 | 18 | 370 | 20 | 373 | 5.94e-125 | 365 |
| Msa1399140 | AT3G21600.2 | 54.545 | 341 | 142 | 4 | 18 | 352 | 20 | 353 | 1.37e-121 | 356 |
| Msa1399140 | AT3G21600.3 | 46.491 | 228 | 109 | 4 | 18 | 239 | 20 | 240 | 2.49e-65 | 209 |
| Msa1399140 | AT4G35985.1 | 32.771 | 415 | 201 | 9 | 17 | 374 | 55 | 448 | 5.34e-63 | 208 |
| Msa1399140 | AT3G51250.1 | 30.691 | 391 | 192 | 6 | 27 | 358 | 70 | 440 | 4.51e-59 | 198 |
| Msa1399140 | AT2G17840.1 | 32.593 | 405 | 191 | 12 | 11 | 360 | 54 | 431 | 8.18e-58 | 195 |
| Msa1399140 | AT4G35985.3 | 31.339 | 351 | 176 | 8 | 17 | 323 | 55 | 384 | 6.40e-48 | 167 |
| Msa1399140 | AT2G17840.2 | 30.163 | 368 | 175 | 12 | 11 | 323 | 54 | 394 | 9.97e-44 | 156 |
| Msa1399140 | AT3G51250.2 | 27.660 | 329 | 159 | 6 | 27 | 296 | 70 | 378 | 7.74e-39 | 142 |
| Msa1399140 | AT3G21590.3 | 43.210 | 162 | 74 | 4 | 168 | 323 | 69 | 218 | 4.95e-28 | 110 |
| Msa1399140 | AT4G35985.2 | 30.455 | 220 | 112 | 5 | 17 | 196 | 55 | 273 | 2.04e-26 | 108 |
| Msa1399140 | AT3G21590.1 | 39.130 | 138 | 66 | 4 | 168 | 299 | 69 | 194 | 9.19e-19 | 84.0 |
| Msa1399140 | AT3G21590.2 | 38.571 | 140 | 68 | 4 | 168 | 301 | 69 | 196 | 5.00e-18 | 82.4 |
Find 71 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATCTGAAGGACTATTT+AGG | 0.231243 | tig0022333:+16430 | None:intergenic |
| TTCCATTGGTGGTAGGGTTT+TGG | 0.236710 | tig0022333:+17621 | None:intergenic |
| TTAGCAACAATCATCAAAAT+AGG | 0.264832 | tig0022333:-17427 | Msa1399140:CDS |
| AACACCATTGAGTAAAGATT+TGG | 0.276866 | tig0022333:+16059 | None:intergenic |
| ATTCATTCTGTTGTTCTTTG+TGG | 0.319852 | tig0022333:+16350 | None:intergenic |
| AGTCCTTCAGATAAGATAAA+TGG | 0.321082 | tig0022333:-16423 | Msa1399140:CDS |
| TTTCTTGCTAAGGCTATTGC+TGG | 0.337164 | tig0022333:-17142 | Msa1399140:CDS |
| AACCATTCTTGTTGCAGCTT+GGG | 0.343724 | tig0022333:+15395 | None:intergenic |
| AGAAGAAGAGTGATCTTGAT+TGG | 0.343736 | tig0022333:-17201 | Msa1399140:CDS |
| CTCTTTGCCCCGGAAATGAT+AGG | 0.359023 | tig0022333:+14281 | None:intergenic |
| GAGAAATTTGGAGAAGCTAT+AGG | 0.362475 | tig0022333:+17589 | None:intergenic |
| AAAGATGGATCAAAATCTTA+TGG | 0.372864 | tig0022333:-14355 | Msa1399140:three_prime_UTR |
| CAACAAGAATGGTTTCTAAC+AGG | 0.380521 | tig0022333:-15386 | Msa1399140:intron |
| CCTCTCCTGGGAGCATCTTA+AGG | 0.391812 | tig0022333:+15977 | None:intergenic |
| AAGGCTATTGCTGGTGGAAC+TGG | 0.403743 | tig0022333:-17133 | Msa1399140:CDS |
| TATAGGTATGGGGAAGAAGC+AGG | 0.403987 | tig0022333:-14649 | Msa1399140:intron |
| GAAATTCTTATACAAATTCC+AGG | 0.407082 | tig0022333:-17541 | Msa1399140:CDS |
| GAAGCCAACAAGACCTCTCC+TGG | 0.411064 | tig0022333:+15964 | None:intergenic |
| TGCAGTAGAAGCTGGATTGA+TGG | 0.416271 | tig0022333:+14549 | None:intergenic |
| AGATTATCAACTTTCACAAC+TGG | 0.421713 | tig0022333:+17370 | None:intergenic |
| TAGTAATGCTTACACCAATC+AGG | 0.423191 | tig0022333:-17083 | Msa1399140:intron |
| GTTGTATATCCAAACCTGAT+TGG | 0.424947 | tig0022333:+17069 | None:intergenic |
| GCTCCCAGGAGAGGTCTTGT+TGG | 0.427347 | tig0022333:-15968 | Msa1399140:CDS |
| TGGAACTGGTCAGATTGTTA+AGG | 0.427763 | tig0022333:-17119 | Msa1399140:CDS |
| AATCAGCTTATTGAGAAAGA+TGG | 0.453599 | tig0022333:-14370 | Msa1399140:three_prime_UTR |
| TTTGTATTTAACATAGATGA+AGG | 0.459289 | tig0022333:-14461 | Msa1399140:three_prime_UTR |
| AAAGTAACACCATAGCTTAG+AGG | 0.460022 | tig0022333:+17307 | None:intergenic |
| AGGATGTAAAGTGTATCTAA+TGG | 0.460051 | tig0022333:-17521 | Msa1399140:CDS |
| AAACCATTCTTGTTGCAGCT+TGG | 0.465341 | tig0022333:+15394 | None:intergenic |
| AGTGTAGCTGCAGTAGAAGC+TGG | 0.473361 | tig0022333:+14541 | None:intergenic |
| CTTGCTAAGGCTATTGCTGG+TGG | 0.481145 | tig0022333:-17139 | Msa1399140:CDS |
| TTATCCAAATCTTTACTCAA+TGG | 0.483709 | tig0022333:-16063 | Msa1399140:CDS |
| ATAGGTATGGGGAAGAAGCA+GGG | 0.484548 | tig0022333:-14648 | Msa1399140:intron |
| CATTCTTGTTGCAGCTTGGG+AGG | 0.487768 | tig0022333:+15398 | None:intergenic |
| GAAGAAGAGTGATCTTGATT+GGG | 0.488678 | tig0022333:-17200 | Msa1399140:CDS |
| AAATCTTTACTCAATGGTGT+TGG | 0.490241 | tig0022333:-16057 | Msa1399140:CDS |
| GGAACTGGTCAGATTGTTAA+GGG | 0.499722 | tig0022333:-17118 | Msa1399140:CDS |
| GCTTAAATCTCAACCAGGGC+AGG | 0.499904 | tig0022333:-16004 | Msa1399140:CDS |
| TCTTGTTGCAGCTTGGGAGG+TGG | 0.500890 | tig0022333:+15401 | None:intergenic |
| ATTAGATACACTTTACATCC+TGG | 0.504957 | tig0022333:+17523 | None:intergenic |
| CTCCCAAGCTGCAACAAGAA+TGG | 0.507194 | tig0022333:-15397 | Msa1399140:CDS |
| CTCCAAAACCCTACCACCAA+TGG | 0.509528 | tig0022333:-17623 | Msa1399140:CDS |
| TAGGTATGGGGAAGAAGCAG+GGG | 0.514222 | tig0022333:-14647 | Msa1399140:CDS |
| GACATGCTGCTAATACTGCT+TGG | 0.519819 | tig0022333:-14594 | Msa1399140:CDS |
| TTTACTTACTGACTGCATCA+AGG | 0.520023 | tig0022333:+15941 | None:intergenic |
| ATCTTAAGGAATGCCTGCCC+TGG | 0.521001 | tig0022333:+15991 | None:intergenic |
| CCTGGTTGAGATTTAAGCAC+AGG | 0.526473 | tig0022333:+16009 | None:intergenic |
| CCACCATTTATCTTATCTGA+AGG | 0.528195 | tig0022333:+16420 | None:intergenic |
| TCTTTGCCCCGGAAATGATA+GGG | 0.535931 | tig0022333:+14282 | None:intergenic |
| ATTTGGAGAAGCTATAGGAA+TGG | 0.551970 | tig0022333:+17594 | None:intergenic |
| CCTGTGCTTAAATCTCAACC+AGG | 0.555632 | tig0022333:-16009 | Msa1399140:CDS |
| CTTTCACAGGCAATGAAAAG+AGG | 0.557368 | tig0022333:+17341 | None:intergenic |
| GATAAGATAAATGGTGGCAA+TGG | 0.557596 | tig0022333:-16414 | Msa1399140:CDS |
| GGCTCATGACCATCTTTCAC+AGG | 0.561567 | tig0022333:+17328 | None:intergenic |
| AAAGTGTATCTAATGGATGA+AGG | 0.562070 | tig0022333:-17514 | Msa1399140:CDS |
| TTACTTACTGACTGCATCAA+GGG | 0.565912 | tig0022333:+15942 | None:intergenic |
| GAATGAATGAAAACCTCATA+CGG | 0.566239 | tig0022333:-16335 | Msa1399140:intron |
| AAATACTTGTATAATTCTGA+AGG | 0.573146 | tig0022333:+14425 | None:intergenic |
| GGTCATGAGCCTCTAAGCTA+TGG | 0.578398 | tig0022333:-17316 | Msa1399140:CDS |
| GCATTCCTTAAGATGCTCCC+AGG | 0.593115 | tig0022333:-15982 | Msa1399140:CDS |
| CCTTAAGATGCTCCCAGGAG+AGG | 0.605060 | tig0022333:-15977 | Msa1399140:CDS |
| GATAAATGGTGGCAATGGCA+TGG | 0.606041 | tig0022333:-16409 | Msa1399140:CDS |
| GTCTTGGTTATATAGGTATG+GGG | 0.612475 | tig0022333:-14659 | Msa1399140:intron |
| GAGCATGTATTTGCAACTGC+AGG | 0.617638 | tig0022333:-14616 | Msa1399140:CDS |
| AAGCCAACAAGACCTCTCCT+GGG | 0.622823 | tig0022333:+15965 | None:intergenic |
| CCTTCAGATAAGATAAATGG+TGG | 0.636170 | tig0022333:-16420 | Msa1399140:CDS |
| ATTTAACATAGATGAAGGCG+TGG | 0.656200 | tig0022333:-14456 | Msa1399140:three_prime_UTR |
| ATGCTACCAGAAAATTCATG+TGG | 0.664358 | tig0022333:+17283 | None:intergenic |
| AATGGTGTTGGAATAGTGAG+TGG | 0.664953 | tig0022333:-16045 | Msa1399140:CDS |
| CTGTGCTTAAATCTCAACCA+GGG | 0.724504 | tig0022333:-16008 | Msa1399140:CDS |
| GAAGCACATGAACTTACACA+AGG | 0.731250 | tig0022333:-17490 | Msa1399140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTAAAATAGATTTGTT+TGG | - | tig0022333:16480-16499 | Msa1399140:intron | 10.0% |
| !!! | TTTTTCAATTAAAATAATGA+GGG | + | tig0022333:16621-16640 | None:intergenic | 10.0% |
| !!! | ATTACTTTTCAAACAAAAAT+AGG | + | tig0022333:15079-15098 | None:intergenic | 15.0% |
| !!! | TAATTTTGACAACATTATAA+TGG | + | tig0022333:16011-16030 | None:intergenic | 15.0% |
| !! | ACTAATTAATTGATTGATAT+TGG | + | tig0022333:16051-16070 | None:intergenic | 15.0% |
| !!! | TATCTTATATTTTTAACAAG+TGG | - | tig0022333:16081-16100 | Msa1399140:CDS | 15.0% |
| !!! | CTTTTTCAATTAAAATAATG+AGG | + | tig0022333:16622-16641 | None:intergenic | 15.0% |
| !!! | CTCATTATTTTAATTGAAAA+AGG | - | tig0022333:16620-16639 | Msa1399140:intron | 15.0% |
| !!! | TTCACTCTTTTTTATTTATT+TGG | + | tig0022333:16858-16877 | None:intergenic | 15.0% |
| !!! | ATATAAAACTTATTTCCTTT+TGG | - | tig0022333:17361-17380 | Msa1399140:CDS | 15.0% |
| !!! | ACTTAATTTTTTGTTTTTTG+TGG | - | tig0022333:17462-17481 | Msa1399140:CDS | 15.0% |
| !!! | TTTTTTTGAAGAAATCAAAA+TGG | + | tig0022333:17569-17588 | None:intergenic | 15.0% |
| !!! | TGTAAAATTCATTTTCAAAA+TGG | + | tig0022333:17662-17681 | None:intergenic | 15.0% |
| !! | AAACACATAAAAAACAAACA+TGG | - | tig0022333:13938-13957 | Msa1399140:three_prime_UTR | 20.0% |
| !! | AACACATAAAAAACAAACAT+GGG | - | tig0022333:13939-13958 | Msa1399140:three_prime_UTR | 20.0% |
| !!! | TGATTATAATTTTCAACACT+TGG | + | tig0022333:14431-14450 | None:intergenic | 20.0% |
| !!! | TTATAATCATTTTCTTGCTA+AGG | - | tig0022333:14442-14461 | Msa1399140:three_prime_UTR | 20.0% |
| !! | TTAGAACTTTATATGAAAAC+AGG | + | tig0022333:14628-14647 | None:intergenic | 20.0% |
| !!! | GTTGTTTTCATTAGATATTT+TGG | - | tig0022333:14648-14667 | Msa1399140:intron | 20.0% |
| !! | TAGTATTTCCTTAAAACTTA+TGG | + | tig0022333:14702-14721 | None:intergenic | 20.0% |
| !!! | AAAACAAGAAAGTTTTAAGT+TGG | + | tig0022333:14822-14841 | None:intergenic | 20.0% |
| !! | GCTATTTGGTATAAAATTTA+GGG | + | tig0022333:14880-14899 | None:intergenic | 20.0% |
| !!! | TTTTAGATTGAGCTAAAAAA+TGG | - | tig0022333:14904-14923 | Msa1399140:intron | 20.0% |
| !!! | TTAAAAGTTGTTTTGAAATC+AGG | - | tig0022333:15119-15138 | Msa1399140:intron | 20.0% |
| !! | TTACAATTTCAACTACTAAA+AGG | - | tig0022333:15975-15994 | Msa1399140:CDS | 20.0% |
| !! | GTTAAAAATATAAGATAGAG+TGG | + | tig0022333:16078-16097 | None:intergenic | 20.0% |
| !! | TATTTATGCTAATAATGTAG+TGG | + | tig0022333:16272-16291 | None:intergenic | 20.0% |
| !! | AACAATTAAAATTTCCTTTG+TGG | + | tig0022333:16305-16324 | None:intergenic | 20.0% |
| !!! | TTAAGGGTAAAATTGTTATT+TGG | + | tig0022333:16348-16367 | None:intergenic | 20.0% |
| !! | GAAGAAAAAATGTATATGTA+AGG | + | tig0022333:16377-16396 | None:intergenic | 20.0% |
| !!! | CTCTTTTTTATTTATTTGGT+TGG | + | tig0022333:16854-16873 | None:intergenic | 20.0% |
| !! | TTTGTATTTAACATAGATGA+AGG | - | tig0022333:17133-17152 | Msa1399140:CDS | 20.0% |
| !! | AAATACTTGTATAATTCTGA+AGG | + | tig0022333:17172-17191 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTAAGTCATCTTA+TGG | + | tig0022333:17207-17226 | None:intergenic | 20.0% |
| !!! | AAATTCATTTTCAAAATGGT+GGG | + | tig0022333:17658-17677 | None:intergenic | 20.0% |
| !!! | AAAATTCATTTTCAAAATGG+TGG | + | tig0022333:17659-17678 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTGTTGAGAAATT+TGG | + | tig0022333:14020-14039 | None:intergenic | 25.0% |
| !! | ATTTCTTGTCTAAGAGTTTT+TGG | + | tig0022333:14038-14057 | None:intergenic | 25.0% |
| ! | GAAATTCTTATACAAATTCC+AGG | - | tig0022333:14053-14072 | Msa1399140:intron | 25.0% |
| ! | TTAGCAACAATCATCAAAAT+AGG | - | tig0022333:14167-14186 | Msa1399140:intron | 25.0% |
| !! | TTTGGTTGAATCTTTTCTTA+AGG | - | tig0022333:14337-14356 | Msa1399140:three_prime_UTR | 25.0% |
| !! | GAAAATTGCCATAAGTTTTA+AGG | - | tig0022333:14691-14710 | Msa1399140:intron | 25.0% |
| ! | ACTATATTTGCTTCTTTAAC+CGG | + | tig0022333:14743-14762 | None:intergenic | 25.0% |
| ! | CAAATATAGTAGTATTGTGT+TGG | - | tig0022333:14753-14772 | Msa1399140:intron | 25.0% |
| ! | GGCTATTTGGTATAAAATTT+AGG | + | tig0022333:14881-14900 | None:intergenic | 25.0% |
| !!! | TTTTAGCTCAATCTAAAAGT+TGG | + | tig0022333:14902-14921 | None:intergenic | 25.0% |
| !!! | TTTTGAAATCAGGTTCAAAA+AGG | - | tig0022333:15129-15148 | Msa1399140:intron | 25.0% |
| ! | AGATAGATATGATTAAAGTC+AGG | + | tig0022333:15347-15366 | None:intergenic | 25.0% |
| !! | CATAGTAAAACTTTTTACAC+CGG | + | tig0022333:15405-15424 | None:intergenic | 25.0% |
| ! | TTATCCAAATCTTTACTCAA+TGG | - | tig0022333:15531-15550 | Msa1399140:intron | 25.0% |
| ! | AATTAAAGTACGTCAATCAA+AGG | - | tig0022333:15935-15954 | Msa1399140:intron | 25.0% |
| ! | GTAGTTGAAATTGTAAAAGT+CGG | + | tig0022333:15971-15990 | None:intergenic | 25.0% |
| ! | AATATATAGTTAGACCACAA+AGG | - | tig0022333:16288-16307 | Msa1399140:intron | 25.0% |
| ! | ATATGTAAGGCAATCATTAA+GGG | + | tig0022333:16364-16383 | None:intergenic | 25.0% |
| ! | TATATGTAAGGCAATCATTA+AGG | + | tig0022333:16365-16384 | None:intergenic | 25.0% |
| ! | TATAAGTTCATGAGAGAATA+TGG | + | tig0022333:16509-16528 | None:intergenic | 25.0% |
| ! | ATAATGAGGGTAAAAAATGA+GGG | + | tig0022333:16608-16627 | None:intergenic | 25.0% |
| ! | AATAATGAGGGTAAAAAATG+AGG | + | tig0022333:16609-16628 | None:intergenic | 25.0% |
| !!! | TGTTGAGTTTTTTAAGTGAT+TGG | + | tig0022333:16717-16736 | None:intergenic | 25.0% |
| ! | ACTTATATGTTATCCACTAT+AGG | - | tig0022333:16761-16780 | Msa1399140:intron | 25.0% |
| !! | CTAATATTTGCTTGCATTTT+TGG | + | tig0022333:17090-17109 | None:intergenic | 25.0% |
| ! | AAAGATGGATCAAAATCTTA+TGG | - | tig0022333:17239-17258 | Msa1399140:CDS | 25.0% |
| !! | GAACTCAATTATTAAGCTTT+TGG | - | tig0022333:17335-17354 | Msa1399140:CDS | 25.0% |
| !! | TAAAACTTATTTCCTTTTGG+TGG | - | tig0022333:17364-17383 | Msa1399140:CDS | 25.0% |
| !! | TGATCTTTTGATGTAAACTT+TGG | - | tig0022333:17487-17506 | Msa1399140:CDS | 25.0% |
| !!! | TTGAGCACATTTTTTCTTAT+TGG | - | tig0022333:17615-17634 | Msa1399140:CDS | 25.0% |
| !!! | ATAGGAATGGTTTTTTCCAT+TGG | + | tig0022333:13990-14009 | None:intergenic | 30.0% |
| ATTAGATACACTTTACATCC+TGG | + | tig0022333:14074-14093 | None:intergenic | 30.0% | |
| AGGATGTAAAGTGTATCTAA+TGG | - | tig0022333:14073-14092 | Msa1399140:intron | 30.0% | |
| ! | AAAGTGTATCTAATGGATGA+AGG | - | tig0022333:14080-14099 | Msa1399140:intron | 30.0% |
| !! | ACTGGTTCATCTTTTGTTAA+AGG | + | tig0022333:14209-14228 | None:intergenic | 30.0% |
| AGATTATCAACTTTCACAAC+TGG | + | tig0022333:14227-14246 | None:intergenic | 30.0% | |
| ! | ACTTTTCCACATGAATTTTC+TGG | - | tig0022333:14305-14324 | Msa1399140:three_prime_UTR | 30.0% |
| TTCTTTAGCCAGTAAAACAT+CGG | - | tig0022333:14845-14864 | Msa1399140:intron | 30.0% | |
| CAATCTAAAAGTTGGCTATT+TGG | + | tig0022333:14894-14913 | None:intergenic | 30.0% | |
| TCTTATCTGAAGGACTATTT+AGG | + | tig0022333:15167-15186 | None:intergenic | 30.0% | |
| AGTCCTTCAGATAAGATAAA+TGG | - | tig0022333:15171-15190 | Msa1399140:intron | 30.0% | |
| ATTCATTCTGTTGTTCTTTG+TGG | + | tig0022333:15247-15266 | None:intergenic | 30.0% | |
| GAATGAATGAAAACCTCATA+CGG | - | tig0022333:15259-15278 | Msa1399140:intron | 30.0% | |
| !! | GTATTTTTGAATACCGTATG+AGG | + | tig0022333:15275-15294 | None:intergenic | 30.0% |
| CATGAAAAACTAGTTAGAGT+CGG | + | tig0022333:15466-15485 | None:intergenic | 30.0% | |
| AACACCATTGAGTAAAGATT+TGG | + | tig0022333:15538-15557 | None:intergenic | 30.0% | |
| AAATCTTTACTCAATGGTGT+TGG | - | tig0022333:15537-15556 | Msa1399140:intron | 30.0% | |
| !! | TACTCTAAGATCTTCAACTT+TGG | + | tig0022333:15694-15713 | None:intergenic | 30.0% |
| !!! | AACCACGATTTGTTTTAAGT+CGG | - | tig0022333:15833-15852 | Msa1399140:intron | 30.0% |
| AATCAAATAGAAGACTGAAC+AGG | + | tig0022333:15895-15914 | None:intergenic | 30.0% | |
| CAATTTCAACTACTAAAAGG+TGG | - | tig0022333:15978-15997 | Msa1399140:CDS | 30.0% | |
| ! | ATCTTTTAATGTCACAGACA+AGG | - | tig0022333:16128-16147 | Msa1399140:intron | 30.0% |
| AAATAGCCTATATCTGATAG+CGG | + | tig0022333:16792-16811 | None:intergenic | 30.0% | |
| !! | TGGTTGGTAAATAATTAACG+TGG | + | tig0022333:16838-16857 | None:intergenic | 30.0% |
| TGTCTTGGTTATATAGGTAT+GGG | - | tig0022333:16934-16953 | Msa1399140:intron | 30.0% | |
| AATCAGCTTATTGAGAAAGA+TGG | - | tig0022333:17224-17243 | Msa1399140:CDS | 30.0% | |
| ATTTGGAGAAGCTATAGGAA+TGG | + | tig0022333:14003-14022 | None:intergenic | 35.0% | |
| GAGAAATTTGGAGAAGCTAT+AGG | + | tig0022333:14008-14027 | None:intergenic | 35.0% | |
| ! | TTTTCATTGCCTGTGAAAGA+TGG | - | tig0022333:14257-14276 | Msa1399140:intron | 35.0% |
| AAAGTAACACCATAGCTTAG+AGG | + | tig0022333:14290-14309 | None:intergenic | 35.0% | |
| ATGCTACCAGAAAATTCATG+TGG | + | tig0022333:14314-14333 | None:intergenic | 35.0% | |
| !! | ACATGAATTTTCTGGTAGCA+TGG | - | tig0022333:14313-14332 | Msa1399140:three_prime_UTR | 35.0% |
| AGAAGAAGAGTGATCTTGAT+TGG | - | tig0022333:14393-14412 | Msa1399140:three_prime_UTR | 35.0% | |
| GAAGAAGAGTGATCTTGATT+GGG | - | tig0022333:14394-14413 | Msa1399140:three_prime_UTR | 35.0% | |
| TAGTAATGCTTACACCAATC+AGG | - | tig0022333:14511-14530 | Msa1399140:CDS | 35.0% | |
| GTTGTATATCCAAACCTGAT+TGG | + | tig0022333:14528-14547 | None:intergenic | 35.0% | |
| !! | GATGTTTTACTGGCTAAAGA+AGG | + | tig0022333:14846-14865 | None:intergenic | 35.0% |
| ! | TATGCTAACCGATGTTTTAC+TGG | + | tig0022333:14856-14875 | None:intergenic | 35.0% |
| AAAAGTCATGCAGTTTCATG+CGG | + | tig0022333:15051-15070 | None:intergenic | 35.0% | |
| TGAAATCAGGTTCAAAAAGG+AGG | - | tig0022333:15132-15151 | Msa1399140:intron | 35.0% | |
| CCACCATTTATCTTATCTGA+AGG | + | tig0022333:15177-15196 | None:intergenic | 35.0% | |
| CCTTCAGATAAGATAAATGG+TGG | - | tig0022333:15174-15193 | Msa1399140:intron | 35.0% | |
| GATAAGATAAATGGTGGCAA+TGG | - | tig0022333:15180-15199 | Msa1399140:intron | 35.0% | |
| TGAGACAGTGTAAAATAGTC+AGG | + | tig0022333:15297-15316 | None:intergenic | 35.0% | |
| CTGAAAAGACATACGAATGA+TGG | - | tig0022333:15365-15384 | Msa1399140:intron | 35.0% | |
| ! | GATGGTTTGTAAATGATTGC+CGG | - | tig0022333:15383-15402 | Msa1399140:intron | 35.0% |
| ! | TTACTTACTGACTGCATCAA+GGG | + | tig0022333:15655-15674 | None:intergenic | 35.0% |
| ! | TTTACTTACTGACTGCATCA+AGG | + | tig0022333:15656-15675 | None:intergenic | 35.0% |
| !!! | TTGTTTTAAGTCGGTGACAA+CGG | - | tig0022333:15842-15861 | Msa1399140:intron | 35.0% |
| CAACAAGAATGGTTTCTAAC+AGG | - | tig0022333:16208-16227 | Msa1399140:intron | 35.0% | |
| GACACACACTCTTGTTAATT+AGG | + | tig0022333:16918-16937 | None:intergenic | 35.0% | |
| ! | ATTAACAAGAGTGTGTGTCT+TGG | - | tig0022333:16919-16938 | Msa1399140:intron | 35.0% |
| AGTGTGTGTCTTGGTTATAT+AGG | - | tig0022333:16928-16947 | Msa1399140:intron | 35.0% | |
| GTGTCTTGGTTATATAGGTA+TGG | - | tig0022333:16933-16952 | Msa1399140:intron | 35.0% | |
| GTCTTGGTTATATAGGTATG+GGG | - | tig0022333:16935-16954 | Msa1399140:intron | 35.0% | |
| ATTTAACATAGATGAAGGCG+TGG | - | tig0022333:17138-17157 | Msa1399140:CDS | 35.0% | |
| ATTTGCTTTACACCACCAAA+AGG | + | tig0022333:17379-17398 | None:intergenic | 35.0% | |
| !! | TTTGGTGGTGTAAAGCAAAT+TGG | - | tig0022333:17379-17398 | Msa1399140:CDS | 35.0% |
| !! | TTGGTGGTGTAAAGCAAATT+GGG | - | tig0022333:17380-17399 | Msa1399140:CDS | 35.0% |
| ACCAATCGTGAAACTGATAA+GGG | + | tig0022333:17413-17432 | None:intergenic | 35.0% | |
| CAAAAAATTAAGTACCACCC+AGG | + | tig0022333:17455-17474 | None:intergenic | 35.0% | |
| GTGCTCAATAGACAATGATA+GGG | + | tig0022333:17603-17622 | None:intergenic | 35.0% | |
| TGTGCTCAATAGACAATGAT+AGG | + | tig0022333:17604-17623 | None:intergenic | 35.0% | |
| !!! | GGTTTTTTCCATTGGTGGTA+GGG | + | tig0022333:13982-14001 | None:intergenic | 40.0% |
| !!! | TGGTTTTTTCCATTGGTGGT+AGG | + | tig0022333:13983-14002 | None:intergenic | 40.0% |
| !!! | GGAATGGTTTTTTCCATTGG+TGG | + | tig0022333:13987-14006 | None:intergenic | 40.0% |
| GAAGCACATGAACTTACACA+AGG | - | tig0022333:14104-14123 | Msa1399140:intron | 40.0% | |
| CTTTCACAGGCAATGAAAAG+AGG | + | tig0022333:14256-14275 | None:intergenic | 40.0% | |
| !! | ATTTTCTGGTAGCATGGCTT+TGG | - | tig0022333:14319-14338 | Msa1399140:three_prime_UTR | 40.0% |
| TTTCTTGCTAAGGCTATTGC+TGG | - | tig0022333:14452-14471 | Msa1399140:three_prime_UTR | 40.0% | |
| TGGAACTGGTCAGATTGTTA+AGG | - | tig0022333:14475-14494 | Msa1399140:three_prime_UTR | 40.0% | |
| GGAACTGGTCAGATTGTTAA+GGG | - | tig0022333:14476-14495 | Msa1399140:three_prime_UTR | 40.0% | |
| ATGCTTACACCAATCAGGTT+TGG | - | tig0022333:14516-14535 | Msa1399140:CDS | 40.0% | |
| !! | TCATTTTGATCAAGCGATCG+TGG | + | tig0022333:14947-14966 | None:intergenic | 40.0% |
| ! | AATGGTGTTGGAATAGTGAG+TGG | - | tig0022333:15549-15568 | Msa1399140:intron | 40.0% |
| CTGTGCTTAAATCTCAACCA+GGG | - | tig0022333:15586-15605 | Msa1399140:intron | 40.0% | |
| TAGTGTTTACAGAACCTGAC+CGG | - | tig0022333:15765-15784 | Msa1399140:intron | 40.0% | |
| ! | TGGTCGGTTCAATTAGGAAT+CGG | - | tig0022333:15790-15809 | Msa1399140:intron | 40.0% |
| !! | CACCGACTTAAAACAAATCG+TGG | + | tig0022333:15838-15857 | None:intergenic | 40.0% |
| AACCATTCTTGTTGCAGCTT+GGG | + | tig0022333:16202-16221 | None:intergenic | 40.0% | |
| AAACCATTCTTGTTGCAGCT+TGG | + | tig0022333:16203-16222 | None:intergenic | 40.0% | |
| AACATCGACCCTATCATTTC+CGG | - | tig0022333:17304-17323 | Msa1399140:CDS | 40.0% | |
| TAATTGAGTTCTCTTTGCCC+CGG | + | tig0022333:17326-17345 | None:intergenic | 40.0% | |
| TCCCTTATCAGTTTCACGAT+TGG | - | tig0022333:17409-17428 | Msa1399140:CDS | 40.0% | |
| CACCAATCGTGAAACTGATA+AGG | + | tig0022333:17414-17433 | None:intergenic | 40.0% | |
| TCTCTGACACACCTTATGTT+GGG | - | tig0022333:17517-17536 | Msa1399140:CDS | 40.0% | |
| ACAAACTATCCCCCAACATA+AGG | + | tig0022333:17531-17550 | None:intergenic | 40.0% | |
| ! | TATGTTGGGGGATAGTTTGT+TGG | - | tig0022333:17531-17550 | Msa1399140:CDS | 40.0% |
| !! | TTCCATTGGTGGTAGGGTTT+TGG | + | tig0022333:13976-13995 | None:intergenic | 45.0% |
| AAATACTAACCAATGCCCGC+AGG | - | tig0022333:14714-14733 | Msa1399140:intron | 45.0% | |
| AATACTAACCAATGCCCGCA+GGG | - | tig0022333:14715-14734 | Msa1399140:intron | 45.0% | |
| GATAAATGGTGGCAATGGCA+TGG | - | tig0022333:15185-15204 | Msa1399140:intron | 45.0% | |
| CCTGGTTGAGATTTAAGCAC+AGG | + | tig0022333:15588-15607 | None:intergenic | 45.0% | |
| CCTGTGCTTAAATCTCAACC+AGG | - | tig0022333:15585-15604 | Msa1399140:intron | 45.0% | |
| GAACAGCGATTCAACCTAGA+TGG | - | tig0022333:15864-15883 | Msa1399140:intron | 45.0% | |
| ! | CTGAACAGGTTGAACCATCT+AGG | + | tig0022333:15881-15900 | None:intergenic | 45.0% |
| !!! | CAAGGTTTTTGAAGCAGCAG+AGG | - | tig0022333:16146-16165 | Msa1399140:intron | 45.0% |
| TATAGGTATGGGGAAGAAGC+AGG | - | tig0022333:16945-16964 | Msa1399140:intron | 45.0% | |
| ATAGGTATGGGGAAGAAGCA+GGG | - | tig0022333:16946-16965 | Msa1399140:intron | 45.0% | |
| GAGCATGTATTTGCAACTGC+AGG | - | tig0022333:16978-16997 | Msa1399140:intron | 45.0% | |
| GACATGCTGCTAATACTGCT+TGG | - | tig0022333:17000-17019 | Msa1399140:intron | 45.0% | |
| TGCAGTAGAAGCTGGATTGA+TGG | + | tig0022333:17048-17067 | None:intergenic | 45.0% | |
| ACATCGACCCTATCATTTCC+GGG | - | tig0022333:17305-17324 | Msa1399140:CDS | 45.0% | |
| TCTTTGCCCCGGAAATGATA+GGG | + | tig0022333:17315-17334 | None:intergenic | 45.0% | |
| CTCTCTGACACACCTTATGT+TGG | - | tig0022333:17516-17535 | Msa1399140:CDS | 45.0% | |
| CTCTGACACACCTTATGTTG+GGG | - | tig0022333:17518-17537 | Msa1399140:CDS | 45.0% | |
| TCTGACACACCTTATGTTGG+GGG | - | tig0022333:17519-17538 | Msa1399140:CDS | 45.0% | |
| CTCCAAAACCCTACCACCAA+TGG | - | tig0022333:13971-13990 | Msa1399140:three_prime_UTR | 50.0% | |
| GGCTCATGACCATCTTTCAC+AGG | + | tig0022333:14269-14288 | None:intergenic | 50.0% | |
| GGTCATGAGCCTCTAAGCTA+TGG | - | tig0022333:14278-14297 | Msa1399140:intron | 50.0% | |
| CTTGCTAAGGCTATTGCTGG+TGG | - | tig0022333:14455-14474 | Msa1399140:three_prime_UTR | 50.0% | |
| AAGGCTATTGCTGGTGGAAC+TGG | - | tig0022333:14461-14480 | Msa1399140:three_prime_UTR | 50.0% | |
| GCTTAAATCTCAACCAGGGC+AGG | - | tig0022333:15590-15609 | Msa1399140:intron | 50.0% | |
| ATCTTAAGGAATGCCTGCCC+TGG | + | tig0022333:15606-15625 | None:intergenic | 50.0% | |
| GCATTCCTTAAGATGCTCCC+AGG | - | tig0022333:15612-15631 | Msa1399140:intron | 50.0% | |
| AAGCCAACAAGACCTCTCCT+GGG | + | tig0022333:15632-15651 | None:intergenic | 50.0% | |
| TTTACAGAACCTGACCGGAC+TGG | - | tig0022333:15770-15789 | Msa1399140:intron | 50.0% | |
| CCTAATTGAACCGACCAGTC+CGG | + | tig0022333:15787-15806 | None:intergenic | 50.0% | |
| CATTCTTGTTGCAGCTTGGG+AGG | + | tig0022333:16199-16218 | None:intergenic | 50.0% | |
| CTCCCAAGCTGCAACAAGAA+TGG | - | tig0022333:16197-16216 | Msa1399140:intron | 50.0% | |
| GCACGTCCGCTATCAGATAT+AGG | - | tig0022333:16783-16802 | Msa1399140:intron | 50.0% | |
| TAGGTATGGGGAAGAAGCAG+GGG | - | tig0022333:16947-16966 | Msa1399140:intron | 50.0% | |
| AGTGTAGCTGCAGTAGAAGC+TGG | + | tig0022333:17056-17075 | None:intergenic | 50.0% | |
| CATCGACCCTATCATTTCCG+GGG | - | tig0022333:17306-17325 | Msa1399140:CDS | 50.0% | |
| CTCTTTGCCCCGGAAATGAT+AGG | + | tig0022333:17316-17335 | None:intergenic | 50.0% | |
| !! | ACGATTGGTGCCAAAACCCT+TGG | - | tig0022333:17424-17443 | Msa1399140:CDS | 50.0% |
| CAAAACCCTTGGTTGTGCCT+GGG | - | tig0022333:17435-17454 | Msa1399140:CDS | 50.0% | |
| TTCTTTAACCGGTGCCCTGC+GGG | + | tig0022333:14732-14751 | None:intergenic | 55.0% | |
| CTTCTTTAACCGGTGCCCTG+CGG | + | tig0022333:14733-14752 | None:intergenic | 55.0% | |
| !! | CCTCTCCTGGGAGCATCTTA+AGG | + | tig0022333:15620-15639 | None:intergenic | 55.0% |
| CCTTAAGATGCTCCCAGGAG+AGG | - | tig0022333:15617-15636 | Msa1399140:intron | 55.0% | |
| GAAGCCAACAAGACCTCTCC+TGG | + | tig0022333:15633-15652 | None:intergenic | 55.0% | |
| !! | CCGGACTGGTCGGTTCAATT+AGG | - | tig0022333:15784-15803 | Msa1399140:intron | 55.0% |
| TCTTGTTGCAGCTTGGGAGG+TGG | + | tig0022333:16196-16215 | None:intergenic | 55.0% | |
| !! | GATAGCGGACGTGCCTATAG+TGG | + | tig0022333:16777-16796 | None:intergenic | 55.0% |
| ! | CCAGGCACAACCAAGGGTTT+TGG | + | tig0022333:17437-17456 | None:intergenic | 55.0% |
| CCAAAACCCTTGGTTGTGCC+TGG | - | tig0022333:17434-17453 | Msa1399140:CDS | 55.0% | |
| TACCACCCAGGCACAACCAA+GGG | + | tig0022333:17443-17462 | None:intergenic | 55.0% | |
| ! | GCTCCCAGGAGAGGTCTTGT+TGG | - | tig0022333:15626-15645 | Msa1399140:intron | 60.0% |
| !! | CAGAACCTGACCGGACTGGT+CGG | - | tig0022333:15774-15793 | Msa1399140:intron | 60.0% |
| TTGAACCGACCAGTCCGGTC+AGG | + | tig0022333:15782-15801 | None:intergenic | 60.0% | |
| AACCCTTGGTTGTGCCTGGG+TGG | - | tig0022333:17438-17457 | Msa1399140:CDS | 60.0% | |
| GTACCACCCAGGCACAACCA+AGG | + | tig0022333:17444-17463 | None:intergenic | 60.0% | |
| AACCAATGCCCGCAGGGCAC+CGG | - | tig0022333:14721-14740 | Msa1399140:intron | 65.0% | |
| AACCGGTGCCCTGCGGGCAT+TGG | + | tig0022333:14726-14745 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022333 | gene | 13934 | 17682 | 13934 | ID=Msa1399140;Name=Msa1399140 |
| tig0022333 | mRNA | 13934 | 17682 | 13934 | ID=Msa1399140-mRNA-1;Parent=Msa1399140;Name=Msa1399140-mRNA-1;_AED=0.14;_eAED=0.14;_QI=23|1|1|1|0.8|0.66|6|285|375 |
| tig0022333 | exon | 13934 | 14007 | 13934 | ID=Msa1399140-mRNA-1:exon:17061;Parent=Msa1399140-mRNA-1 |
| tig0022333 | exon | 14296 | 14666 | 14296 | ID=Msa1399140-mRNA-1:exon:17060;Parent=Msa1399140-mRNA-1 |
| tig0022333 | exon | 15387 | 15471 | 15387 | ID=Msa1399140-mRNA-1:exon:17059;Parent=Msa1399140-mRNA-1 |
| tig0022333 | exon | 15950 | 16116 | 15950 | ID=Msa1399140-mRNA-1:exon:17058;Parent=Msa1399140-mRNA-1 |
| tig0022333 | exon | 16336 | 16475 | 16336 | ID=Msa1399140-mRNA-1:exon:17057;Parent=Msa1399140-mRNA-1 |
| tig0022333 | exon | 17084 | 17682 | 17084 | ID=Msa1399140-mRNA-1:exon:17056;Parent=Msa1399140-mRNA-1 |
| tig0022333 | five_prime_UTR | 17660 | 17682 | 17660 | ID=Msa1399140-mRNA-1:five_prime_utr;Parent=Msa1399140-mRNA-1 |
| tig0022333 | CDS | 17084 | 17659 | 17084 | ID=Msa1399140-mRNA-1:cds;Parent=Msa1399140-mRNA-1 |
| tig0022333 | CDS | 16336 | 16475 | 16336 | ID=Msa1399140-mRNA-1:cds;Parent=Msa1399140-mRNA-1 |
| tig0022333 | CDS | 15950 | 16116 | 15950 | ID=Msa1399140-mRNA-1:cds;Parent=Msa1399140-mRNA-1 |
| tig0022333 | CDS | 15387 | 15471 | 15387 | ID=Msa1399140-mRNA-1:cds;Parent=Msa1399140-mRNA-1 |
| tig0022333 | CDS | 14507 | 14666 | 14507 | ID=Msa1399140-mRNA-1:cds;Parent=Msa1399140-mRNA-1 |
| tig0022333 | three_prime_UTR | 14296 | 14506 | 14296 | ID=Msa1399140-mRNA-1:three_prime_utr;Parent=Msa1399140-mRNA-1 |
| tig0022333 | three_prime_UTR | 13934 | 14007 | 13934 | ID=Msa1399140-mRNA-1:three_prime_utr;Parent=Msa1399140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
