AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1002580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002580 MtrunA17_Chr7g0275321 95.724 304 13 0 1 304 1 304 0.0 602
Msa1002580 MtrunA17_Chr8g0347741 72.168 309 75 5 1 304 1 303 3.94e-151 430
Msa1002580 MtrunA17_Chr5g0410531 37.135 342 166 16 1 304 1 331 2.21e-45 158
Msa1002580 MtrunA17_Chr8g0369161 35.693 339 174 15 1 304 1 330 8.73e-40 143
Msa1002580 MtrunA17_Chr8g0373571 35.069 288 138 10 32 304 30 283 4.78e-28 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002580 AT2G46270.1 57.098 317 88 13 1 304 1 282 1.56e-100 300
Msa1002580 AT2G46270.3 57.098 317 88 13 1 304 1 282 1.56e-100 300
Msa1002580 AT2G46270.2 54.167 312 82 12 1 304 1 259 2.22e-89 271
Msa1002580 AT2G46270.4 54.167 312 82 12 1 304 1 259 2.22e-89 271
Msa1002580 AT4G01120.1 49.645 282 104 9 26 303 24 271 8.81e-63 202
Msa1002580 AT2G35530.1 37.333 300 147 11 33 304 42 328 3.34e-35 132
Msa1002580 AT1G32150.1 36.012 336 165 16 1 304 1 318 1.92e-31 121
Msa1002580 AT4G36730.1 35.179 307 134 12 1 304 1 245 2.04e-29 114
Msa1002580 AT4G36730.2 34.528 307 134 12 1 304 1 243 3.11e-28 111

Find 162 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTTAGATTTGACAAATA+TGG 0.192952 6_4:+88298802 Msa1002580:three_prime_UTR
ATATAAATGTTGGTTTCTTC+TGG 0.220126 6_4:+88298039 Msa1002580:exon
ATCAGTATTTCCAGATGATT+TGG 0.227999 6_4:-88296713 None:intergenic
TGCAACTTCGCACCAGAATT+TGG 0.240869 6_4:-88298569 None:intergenic
GGAGGTGTCTCTATGCTTAA+AGG 0.248730 6_4:-88296691 None:intergenic
CTATATCTTCAGGCATATTA+TGG 0.258289 6_4:+88295995 Msa1002580:intron
GATGGAAAATGTTGCATTAA+AGG 0.262914 6_4:+88298299 Msa1002580:three_prime_UTR
ATCAGAAACTGAGATTTCTT+TGG 0.279786 6_4:-88297613 None:intergenic
GAAACTGTTAGCAGTAGTTT+TGG 0.280786 6_4:-88298682 None:intergenic
ATCAAGAGTTAATAATAATT+CGG 0.281960 6_4:+88298508 Msa1002580:three_prime_UTR
AAACCATGATCATGTAGTTT+TGG 0.290045 6_4:+88298647 Msa1002580:three_prime_UTR
AAAATTTAAAATTGCTCAAC+TGG 0.296427 6_4:+88298412 Msa1002580:three_prime_UTR
GGAAGTGACGGCAACACTTC+AGG 0.299939 6_4:+88297005 Msa1002580:CDS
TGTGACAACAAACCAAATTC+TGG 0.315200 6_4:+88298557 Msa1002580:three_prime_UTR
TTCTTGTATACATTTGGCTT+TGG 0.319742 6_4:+88299006 Msa1002580:three_prime_UTR
TTGTCTTTCTTGTATACATT+TGG 0.321803 6_4:+88299000 Msa1002580:three_prime_UTR
TCCCTCCTGTGTCAAATATA+AGG 0.324549 6_4:-88299029 None:intergenic
TTGGTCAAAATTATCTCTTT+TGG 0.325531 6_4:-88298440 None:intergenic
TACTTACAGGTGCGGTCCTC+TGG 0.332601 6_4:-88298472 None:intergenic
CAGCATATGATGCCACCTTA+TGG 0.338444 6_4:+88296194 Msa1002580:intron
TACAACTCACCTGCGGCTTC+TGG 0.339544 6_4:+88296043 Msa1002580:CDS
CAGTCTTGGTAGATTTCTCT+TGG 0.342025 6_4:-88295512 None:intergenic
AACCGTCGCGTAATATATTA+TGG 0.344543 6_4:+88298887 Msa1002580:three_prime_UTR
CTCAGAATCGTATATTAATC+AGG 0.346330 6_4:+88298095 Msa1002580:three_prime_UTR
GTAGAGCTCACCACTGTTAC+AGG 0.347150 6_4:-88295549 None:intergenic
GATAAGCAATGAATTAGTTC+TGG 0.347793 6_4:-88298750 None:intergenic
AAGAAATTGAAAGGGTTTGA+TGG 0.347852 6_4:+88296748 Msa1002580:CDS
TCAAGAGTTAATAATAATTC+GGG 0.358553 6_4:+88298509 Msa1002580:three_prime_UTR
GTTGAATTTCGTAGGAGTTA+AGG 0.362944 6_4:-88294286 None:intergenic
CGTGCTTATTCCCTCCCTTC+AGG 0.362974 6_4:+88298174 Msa1002580:three_prime_UTR
CTTTATCAGATACCATTATA+AGG 0.363208 6_4:-88298935 None:intergenic
TCAGGCTGAGGCCGAAGAAC+TGG 0.370336 6_4:+88298192 Msa1002580:three_prime_UTR
TCTCTCTCTATGGCTCTGTT+TGG 0.375648 6_4:-88294197 None:intergenic
ACCTGCATGGCTGCCCAATC+AGG 0.376559 6_4:-88295687 None:intergenic
GGCAATGCAGCAGAAGGTTG+TGG 0.378841 6_4:-88297768 None:intergenic
GATGGACTTGCAATGTCAAT+AGG 0.380086 6_4:+88296766 Msa1002580:CDS
GTTGCCCCTGCTGGTGTCAC+AGG 0.389453 6_4:+88297648 Msa1002580:CDS
GATTGCCTGCTTTCAGCTCC+AGG 0.391527 6_4:-88296814 None:intergenic
GGAACTGTGGAGGATGAAAA+TGG 0.395483 6_4:+88298530 Msa1002580:three_prime_UTR
TTGCTTATCATCAGTTACTT+AGG 0.395524 6_4:+88298764 Msa1002580:three_prime_UTR
TCATACCTGCTTCCTTAGTC+TGG 0.402601 6_4:-88298017 None:intergenic
AGAGCTGATGCTGTGGCTGC+TGG 0.414627 6_4:+88298614 Msa1002580:three_prime_UTR
TCCTGATTGGGCAGCCATGC+AGG 0.414803 6_4:+88295686 Msa1002580:CDS
TTCCATTAGGTGCTTGCAAT+GGG 0.421607 6_4:+88295480 Msa1002580:intron
CATGCTGAGAGTGCTGAGCC+TGG 0.423095 6_4:+88296796 Msa1002580:CDS
TGATGCACTCTCAGCATTCA+AGG 0.423689 6_4:-88298230 None:intergenic
TGCGAAGTTGCACCAACTAT+TGG 0.423928 6_4:+88298580 Msa1002580:three_prime_UTR
ATCATCTGGAAATACTGATC+AGG 0.424963 6_4:+88296717 Msa1002580:CDS
TCAGTATTTCCAGATGATTT+GGG 0.427807 6_4:-88296712 None:intergenic
CTGCATTGCCTCCCGAGGCT+TGG 0.430381 6_4:+88297781 Msa1002580:CDS
ATGTTCATGTCTATCCTGAT+TGG 0.430637 6_4:+88295673 Msa1002580:CDS
GCCTCCCGAGGCTTGGATAC+AGG 0.438943 6_4:+88297788 Msa1002580:CDS
GATTGGTGTGCACCTTATAA+TGG 0.439174 6_4:+88298923 Msa1002580:three_prime_UTR
GAGACACCTCCCAAATCATC+TGG 0.441148 6_4:+88296703 Msa1002580:CDS
AATTGACCTGTGACACCAGC+AGG 0.458083 6_4:-88297654 None:intergenic
GAAGGTTGTGGGGCACTTGT+GGG 0.461347 6_4:-88297756 None:intergenic
AGCAGGTATGATATAAATGT+TGG 0.465400 6_4:+88298029 Msa1002580:exon
TATTCCCTCCCTTCAGGCTG+AGG 0.472450 6_4:+88298180 Msa1002580:three_prime_UTR
CTGAGCCTGGAGCTGAAAGC+AGG 0.472797 6_4:+88296809 Msa1002580:CDS
AGAAGGTTGTGGGGCACTTG+TGG 0.474517 6_4:-88297757 None:intergenic
GTTCTTCGGCCTCAGCCTGA+AGG 0.476793 6_4:-88298189 None:intergenic
TCGTAGGAGTTAAGGTTAAG+TGG 0.481491 6_4:-88294278 None:intergenic
GAAGTGACGGCAACACTTCA+GGG 0.493985 6_4:+88297006 Msa1002580:CDS
GCAATGCAGCAGAAGGTTGT+GGG 0.494500 6_4:-88297767 None:intergenic
TGTTCATGTCTATCCTGATT+GGG 0.502463 6_4:+88295674 Msa1002580:CDS
GAAATCTGAAAGACTGAGGA+TGG 0.502476 6_4:+88298281 Msa1002580:three_prime_UTR
ATGGTGTGTGTATTAATGAT+TGG 0.504419 6_4:+88298906 Msa1002580:three_prime_UTR
GTCTGATGAAGAAATTGAAA+GGG 0.504608 6_4:+88296740 Msa1002580:CDS
TTCTGCTGCATTGCCTCCCG+AGG 0.504802 6_4:+88297776 Msa1002580:CDS
TTTCCATTAGGTGCTTGCAA+TGG 0.506264 6_4:+88295479 Msa1002580:intron
CACTCCTCACCCATATATGT+GGG 0.507261 6_4:+88296069 Msa1002580:CDS
GGCCTTATATTTGACACAGG+AGG 0.507511 6_4:+88299027 Msa1002580:three_prime_UTR
CTCAGTTTCTGATAAGATGA+TGG 0.512164 6_4:+88297623 Msa1002580:CDS
TTCAGCGATGACCACCGCGC+TGG 0.513035 6_4:+88297695 Msa1002580:CDS
CTGCTAGGAGGTCCAGACTA+AGG 0.514918 6_4:+88298005 Msa1002580:CDS
AGGCTTACAATAGGAACTGC+AGG 0.515593 6_4:-88296263 None:intergenic
GGTCCTCTGGCTGTCAATGT+TGG 0.516004 6_4:-88298459 None:intergenic
GCAGCCACAGCATCAGCTCT+AGG 0.517070 6_4:-88298611 None:intergenic
TAAGGTGGCATGGCAACTCT+TGG 0.518466 6_4:-88296019 None:intergenic
TGTGGATACATTGCTGCATA+AGG 0.519877 6_4:-88296221 None:intergenic
GCCGCAGGTGAGTTGTAGTA+AGG 0.520621 6_4:-88296037 None:intergenic
TTCTTCGGCCTCAGCCTGAA+GGG 0.521230 6_4:-88298188 None:intergenic
ACTGTTTAAGCAGATGGAGA+AGG 0.523724 6_4:+88297561 Msa1002580:intron
ACACTCCTCACCCATATATG+TGG 0.527863 6_4:+88296068 Msa1002580:CDS
GGTCTGATGAAGAAATTGAA+AGG 0.533436 6_4:+88296739 Msa1002580:CDS
TAGGACTTGCATCCAATAGT+TGG 0.533692 6_4:-88298592 None:intergenic
GGTGTCACAGGTCAATTAGT+TGG 0.533761 6_4:+88297660 Msa1002580:CDS
GACATGAACATTCGTCTGGT+TGG 0.536497 6_4:-88295661 None:intergenic
ATGATGGCAGTTGCCCCTGC+TGG 0.540223 6_4:+88297639 Msa1002580:CDS
GATAGACATGAACATTCGTC+TGG 0.541034 6_4:-88295665 None:intergenic
GCTAACAGTTTCTGAGGGGA+TGG 0.542549 6_4:+88298693 Msa1002580:three_prime_UTR
CCGTACCTGTATCCAAGCCT+CGG 0.543429 6_4:-88297793 None:intergenic
GCTGCATAAGGATGTCCATA+AGG 0.543750 6_4:-88296209 None:intergenic
GCCTTATATTTGACACAGGA+GGG 0.545513 6_4:+88299028 Msa1002580:three_prime_UTR
ATGCCAAAACTACATGATCA+TGG 0.550316 6_4:-88298650 None:intergenic
CAGCAATGTATCCACATGGA+GGG 0.550797 6_4:+88296228 Msa1002580:CDS
TCATCTGGAAATACTGATCA+GGG 0.551108 6_4:+88296718 Msa1002580:CDS
TATGTTATTATTACCTGTGG+TGG 0.555801 6_4:-88296094 None:intergenic
ACTACTGCTAACAGTTTCTG+AGG 0.556403 6_4:+88298687 Msa1002580:three_prime_UTR
GAGGTCCAGACTAAGGAAGC+AGG 0.557260 6_4:+88298012 Msa1002580:CDS
AGAAGGAAAAGAAGCCGTGA+GGG 0.558999 6_4:+88297176 Msa1002580:CDS
CAGTGGTCGGTGTTCCCTCA+CGG 0.564990 6_4:-88297190 None:intergenic
ACCACTGTTACAGGTGAAGA+AGG 0.565721 6_4:-88295540 None:intergenic
CAGGCTCAGCACTCTCAGCA+TGG 0.566951 6_4:-88296795 None:intergenic
TCGGGAGGCAATGCAGCAGA+AGG 0.568716 6_4:-88297774 None:intergenic
GATGAAATTCCTTGACTATG+TGG 0.568887 6_4:-88296562 None:intergenic
ATAAAGATTATACTCAGCAT+AGG 0.572183 6_4:+88298140 Msa1002580:three_prime_UTR
TCGGCCTCAGCCTGAAGGGA+GGG 0.572548 6_4:-88298184 None:intergenic
GCCTTCTTCACCTGTAACAG+TGG 0.573364 6_4:+88295539 Msa1002580:CDS
AATACTGAGGGTTCGAGTGA+TGG 0.573693 6_4:+88296984 Msa1002580:CDS
CTGTTTAAGCAGATGGAGAA+GGG 0.581574 6_4:+88297562 Msa1002580:intron
AGCGTGAACTGAAGCGTGAG+AGG 0.582159 6_4:+88297960 Msa1002580:CDS
CGTACCTGTATCCAAGCCTC+GGG 0.583108 6_4:-88297792 None:intergenic
ATCAGGCTAATCAAACAAGA+AGG 0.583524 6_4:+88297159 Msa1002580:intron
CTTTATCAAGTGTGTGACAT+GGG 0.590566 6_4:-88298123 None:intergenic
CGTGAGGGAACACCGACCAC+TGG 0.590853 6_4:+88297191 Msa1002580:CDS
AATCAAATCGAGAATCTGCT+AGG 0.590860 6_4:+88297990 Msa1002580:CDS
TTTGGCCTTATATTTGACAC+AGG 0.591927 6_4:+88299024 Msa1002580:three_prime_UTR
CTACTGCTAACAGTTTCTGA+GGG 0.592032 6_4:+88298688 Msa1002580:three_prime_UTR
CACCATAATATATTACGCGA+CGG 0.593334 6_4:-88298889 None:intergenic
ATTCCTTGACTATGTGGATG+TGG 0.594309 6_4:-88296556 None:intergenic
TTCGGCCTCAGCCTGAAGGG+AGG 0.599013 6_4:-88298185 None:intergenic
TCTTTATCAAGTGTGTGACA+TGG 0.602758 6_4:-88298124 None:intergenic
AAATTTAAAATTGCTCAACT+GGG 0.603679 6_4:+88298413 Msa1002580:three_prime_UTR
TGACCAACATTGACAGCCAG+AGG 0.603992 6_4:+88298456 Msa1002580:three_prime_UTR
TAATAATTCGGGAACTGTGG+AGG 0.607798 6_4:+88298520 Msa1002580:three_prime_UTR
GGTTCGAGTGATGGAAGTGA+CGG 0.608791 6_4:+88296993 Msa1002580:CDS
TAATAATAATTCGGGAACTG+TGG 0.615906 6_4:+88298517 Msa1002580:three_prime_UTR
CTTGCAATGTCAATAGGCAA+TGG 0.616162 6_4:+88296772 Msa1002580:CDS
TGAGTTGTAGTAAGGTGGCA+TGG 0.618268 6_4:-88296029 None:intergenic
GTGAACTGAAGCGTGAGAGG+AGG 0.619223 6_4:+88297963 Msa1002580:CDS
GTCATCGCTGAAGAAACTGC+AGG 0.623544 6_4:-88297684 None:intergenic
ACCTGTATCCAAGCCTCGGG+AGG 0.627725 6_4:-88297789 None:intergenic
CAATGCAGCAGAAGGTTGTG+GGG 0.639810 6_4:-88297766 None:intergenic
GTATTTCCAGATGATTTGGG+AGG 0.642501 6_4:-88296709 None:intergenic
AGCAATGTATCCACATGGAG+GGG 0.644007 6_4:+88296229 Msa1002580:CDS
GCAGGTGAGTTGTAGTAAGG+TGG 0.644026 6_4:-88296034 None:intergenic
AACAGAGTCATACCAGTGGT+CGG 0.649459 6_4:-88297203 None:intergenic
CAAATCGAGAATCTGCTAGG+AGG 0.653155 6_4:+88297993 Msa1002580:CDS
CTGAGAAATCTGAAAGACTG+AGG 0.654049 6_4:+88298277 Msa1002580:three_prime_UTR
GGCTTACAATAGGAACTGCA+GGG 0.654085 6_4:-88296262 None:intergenic
GGTCCACATCCACATAGTCA+AGG 0.654527 6_4:+88296553 Msa1002580:CDS
ACTCCTCACCCATATATGTG+GGG 0.654672 6_4:+88296070 Msa1002580:CDS
ATTGACCTGTGACACCAGCA+GGG 0.658341 6_4:-88297653 None:intergenic
GCATAAGGATGTCCATAAGG+TGG 0.658959 6_4:-88296206 None:intergenic
CTCCTCACCCATATATGTGG+GGG 0.659411 6_4:+88296071 Msa1002580:CDS
AAGTCCTAGAGCTGATGCTG+TGG 0.662680 6_4:+88298607 Msa1002580:three_prime_UTR
ATTTCTCAGCTCCAGCGCGG+TGG 0.663610 6_4:-88297706 None:intergenic
GCAGCAATGTATCCACATGG+AGG 0.664985 6_4:+88296227 Msa1002580:CDS
GGAGTGTGACCAGAAGCCGC+AGG 0.665905 6_4:-88296052 None:intergenic
ATGAACAGTGTGAATACTGA+GGG 0.671969 6_4:+88296972 Msa1002580:intron
AAGAAGGAAAAGAAGCCGTG+AGG 0.679307 6_4:+88297175 Msa1002580:CDS
GAAGGGAAAACTCATACACA+AGG 0.687878 6_4:+88297579 Msa1002580:CDS
TATGCAGCAATGTATCCACA+TGG 0.688073 6_4:+88296224 Msa1002580:CDS
TGAGTATAAACCCCTCCATG+TGG 0.689024 6_4:-88296239 None:intergenic
TTGACCTGTGACACCAGCAG+GGG 0.690300 6_4:-88297652 None:intergenic
AAGTGACGGCAACACTTCAG+GGG 0.693337 6_4:+88297007 Msa1002580:CDS
TACTGCTAACAGTTTCTGAG+GGG 0.711047 6_4:+88298689 Msa1002580:three_prime_UTR
CTGAAAGCAGGCAATCACAG+AGG 0.731086 6_4:+88296821 Msa1002580:CDS
ACCTTACTACAACTCACCTG+CGG 0.748487 6_4:+88296036 Msa1002580:CDS
AGAATTTCTCAGCTCCAGCG+CGG 0.750273 6_4:-88297709 None:intergenic
TATGAACAGTGTGAATACTG+AGG 0.751869 6_4:+88296971 Msa1002580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTTTACAAACATAAA+TGG + chr6_4:88295935-88295954 Msa1002580:intron 10.0%
!! ATTAAAAACTAAAAAATCAA+AGG - chr6_4:88296298-88296317 None:intergenic 10.0%
!!! TTATTTTAATACCATATTTT+GGG - chr6_4:88297515-88297534 None:intergenic 10.0%
!!! ATTATTTTAATACCATATTT+TGG - chr6_4:88297516-88297535 None:intergenic 10.0%
!! TAGAAAACTTATATATAAGT+TGG - chr6_4:88295368-88295387 None:intergenic 15.0%
!! TTCAATTTGATATTAATTAG+AGG - chr6_4:88295765-88295784 None:intergenic 15.0%
!!! ATTTAAAACAAATAGACTAT+AGG - chr6_4:88297091-88297110 None:intergenic 15.0%
!!! GATTTTAAAATAATTCCTTT+TGG + chr6_4:88297916-88297935 Msa1002580:intron 15.0%
!! ATCAAGAGTTAATAATAATT+CGG + chr6_4:88298508-88298527 Msa1002580:three_prime_UTR 15.0%
!! AAAAAAAAGTTGAATTTCGT+AGG - chr6_4:88294297-88294316 None:intergenic 20.0%
!!! TGTTTGTTTTTAATTCTGTT+TGG + chr6_4:88294321-88294340 Msa1002580:five_prime_UTR 20.0%
!!! TTTTAGTTAAACAAGCAAAA+AGG + chr6_4:88294498-88294517 Msa1002580:intron 20.0%
!!! TCTTAATTTGCATCTAATTA+AGG + chr6_4:88294542-88294561 Msa1002580:intron 20.0%
!! CTAAAGATAATTCAATTCAA+GGG - chr6_4:88294878-88294897 None:intergenic 20.0%
!! CCATCAAAGTTTAATATTAT+TGG - chr6_4:88294905-88294924 None:intergenic 20.0%
!! CCAATAATATTAAACTTTGA+TGG + chr6_4:88294902-88294921 Msa1002580:intron 20.0%
!! TAATATTAAACTTTGATGGA+AGG + chr6_4:88294906-88294925 Msa1002580:intron 20.0%
!!! TTATATATAAGTTGGATATC+CGG - chr6_4:88295360-88295379 None:intergenic 20.0%
!!! GCGATATTTTTTTAAAGAAT+TGG + chr6_4:88295424-88295443 Msa1002580:intron 20.0%
!!! ATTTTTTTAAAGAATTGGCA+TGG + chr6_4:88295429-88295448 Msa1002580:intron 20.0%
!!! TTATGTACTCATCTTTTAAT+AGG + chr6_4:88295632-88295651 Msa1002580:intron 20.0%
!!! ATTTTTTATCCACTTGAAAA+TGG + chr6_4:88295904-88295923 Msa1002580:intron 20.0%
!!! ATTACGAATGCTTTATTTTT+CGG + chr6_4:88296487-88296506 Msa1002580:intron 20.0%
!!! AATTCCGTTTTGTAAAATAT+AGG + chr6_4:88296531-88296550 Msa1002580:intron 20.0%
!!! ATTCCGTTTTGTAAAATATA+GGG + chr6_4:88296532-88296551 Msa1002580:intron 20.0%
!!! ATTAAAATAATCAGTGTTGA+TGG + chr6_4:88297525-88297544 Msa1002580:intron 20.0%
!!! ATTTATTTTAGAATGAACAC+TGG - chr6_4:88297736-88297755 None:intergenic 20.0%
!!! AAAATTTAAAATTGCTCAAC+TGG + chr6_4:88298412-88298431 Msa1002580:three_prime_UTR 20.0%
!!! AAATTTAAAATTGCTCAACT+GGG + chr6_4:88298413-88298432 Msa1002580:three_prime_UTR 20.0%
!! TCAAGAGTTAATAATAATTC+GGG + chr6_4:88298509-88298528 Msa1002580:three_prime_UTR 20.0%
!! CTATTTAGATTTGACAAATA+TGG + chr6_4:88298802-88298821 Msa1002580:three_prime_UTR 20.0%
!!! TTAGATATTTTAGTTTAGAG+AGG + chr6_4:88298856-88298875 Msa1002580:three_prime_UTR 20.0%
!!! TAGATATTTTAGTTTAGAGA+GGG + chr6_4:88298857-88298876 Msa1002580:three_prime_UTR 20.0%
!! TTTTTAATGTTTTGTGTCTG+AGG + chr6_4:88294391-88294410 Msa1002580:intron 25.0%
! AAGCAAAAAGGTTTGAATTT+AGG + chr6_4:88294510-88294529 Msa1002580:intron 25.0%
! TTCAAGAAATTAGTTGAAAC+TGG + chr6_4:88294582-88294601 Msa1002580:intron 25.0%
!!! ACATTTTTTCACTTTCACAT+GGG - chr6_4:88294670-88294689 None:intergenic 25.0%
!!! AACATTTTTTCACTTTCACA+TGG - chr6_4:88294671-88294690 None:intergenic 25.0%
! TGTGAAAGTGAAAAAATGTT+TGG + chr6_4:88294671-88294690 Msa1002580:intron 25.0%
! ATAATTCAATTCAAGGGAAA+TGG - chr6_4:88294872-88294891 None:intergenic 25.0%
! GCTAAAGATAATTCAATTCA+AGG - chr6_4:88294879-88294898 None:intergenic 25.0%
!! TCTGAAATTTAGTTTACTTG+AGG + chr6_4:88295021-88295040 Msa1002580:intron 25.0%
!! CTGAAATTTAGTTTACTTGA+GGG + chr6_4:88295022-88295041 Msa1002580:intron 25.0%
!! TGAAATTTAGTTTACTTGAG+GGG + chr6_4:88295023-88295042 Msa1002580:intron 25.0%
!!! CTTTGCAAACTTTTTTTTTG+TGG + chr6_4:88295278-88295297 Msa1002580:intron 25.0%
!!! TTTTTCAATACATAGTGAAC+CGG + chr6_4:88295338-88295357 Msa1002580:intron 25.0%
! TAAACAACTCAAAAGGAAAA+AGG - chr6_4:88295719-88295738 None:intergenic 25.0%
!! CATCATTATCAGTTTTCTAA+TGG - chr6_4:88295961-88295980 None:intergenic 25.0%
! AAAATCAAAGGTAAGAATGT+AGG - chr6_4:88296286-88296305 None:intergenic 25.0%
! TGAAACTTATGTTAATTGTC+TGG + chr6_4:88296333-88296352 Msa1002580:intron 25.0%
! AAATTGATCAATACTGACAA+AGG + chr6_4:88296382-88296401 Msa1002580:intron 25.0%
! ATTGCAAGTATAATGCATTA+AGG - chr6_4:88296451-88296470 None:intergenic 25.0%
! AGAAAATTATAACTTACAGC+AGG - chr6_4:88296592-88296611 None:intergenic 25.0%
! TATCCACAATAACAAACAAA+TGG - chr6_4:88296931-88296950 None:intergenic 25.0%
! CATATCATCATAAAGTTACT+TGG - chr6_4:88296955-88296974 None:intergenic 25.0%
! ATAAGACTCCAATATCAATA+CGG - chr6_4:88297464-88297483 None:intergenic 25.0%
! AATATCATGTACCCAAAATA+TGG + chr6_4:88297501-88297520 Msa1002580:intron 25.0%
! AGAACAGTTTAAATACTCTA+TGG + chr6_4:88297832-88297851 Msa1002580:intron 25.0%
!! ATAATTCCTTTTGGTATGTT+TGG + chr6_4:88297925-88297944 Msa1002580:intron 25.0%
!!! ATATAAATGTTGGTTTCTTC+TGG + chr6_4:88298039-88298058 Msa1002580:exon 25.0%
! ATAAAGATTATACTCAGCAT+AGG + chr6_4:88298140-88298159 Msa1002580:three_prime_UTR 25.0%
!!! ACTTCATTTTTTTTCGATTC+AGG + chr6_4:88298388-88298407 Msa1002580:intron 25.0%
!! TTGGTCAAAATTATCTCTTT+TGG - chr6_4:88298443-88298462 None:intergenic 25.0%
!! AATAAGTTTTCTGTACTTAC+AGG - chr6_4:88298488-88298507 None:intergenic 25.0%
! CTTTATCAGATACCATTATA+AGG - chr6_4:88298938-88298957 None:intergenic 25.0%
! TTGTCTTTCTTGTATACATT+TGG + chr6_4:88299000-88299019 Msa1002580:three_prime_UTR 25.0%
!!! GAGTTTTTTTTCTCTCTCTA+TGG - chr6_4:88294210-88294229 None:intergenic 30.0%
! CTCTCTCTAGAAAAAAATGA+GGG - chr6_4:88294242-88294261 None:intergenic 30.0%
! TCTCTCTCTAGAAAAAAATG+AGG - chr6_4:88294243-88294262 None:intergenic 30.0%
! AGGTTTGAATTTAGGTGTTT+TGG + chr6_4:88294518-88294537 Msa1002580:intron 30.0%
AAATTAGTTGAAACTGGATC+AGG + chr6_4:88294588-88294607 Msa1002580:intron 30.0%
!!! CATTTTTTCACTTTCACATG+GGG - chr6_4:88294669-88294688 None:intergenic 30.0%
AAAAAATGTTTGGTATGCGA+GGG + chr6_4:88294681-88294700 Msa1002580:intron 30.0%
GTAGTATTCAACAAGTTTCT+AGG - chr6_4:88295063-88295082 None:intergenic 30.0%
! ACTCATGCAATTTTTCATCA+AGG + chr6_4:88295187-88295206 Msa1002580:intron 30.0%
!!! TTGACCAAGTTTTTTCCATT+AGG + chr6_4:88295467-88295486 Msa1002580:intron 30.0%
AAGCAAAATATTACCCAACT+AGG - chr6_4:88295826-88295845 None:intergenic 30.0%
GTTAAATGAGAAAACAACCA+GGG - chr6_4:88295851-88295870 None:intergenic 30.0%
TGTTAAATGAGAAAACAACC+AGG - chr6_4:88295852-88295871 None:intergenic 30.0%
!! TAAAGTGAACCATTTTCAAG+TGG - chr6_4:88295916-88295935 None:intergenic 30.0%
AAATTGTCTGCTATATCTTC+AGG + chr6_4:88295985-88296004 Msa1002580:intron 30.0%
CTATATCTTCAGGCATATTA+TGG + chr6_4:88295995-88296014 Msa1002580:intron 30.0%
TATGTTATTATTACCTGTGG+TGG - chr6_4:88296097-88296116 None:intergenic 30.0%
ACCACAGGTAATAATAACAT+AGG + chr6_4:88296096-88296115 Msa1002580:intron 30.0%
TTGCTTATTCATGTCATCTA+GGG - chr6_4:88296158-88296177 None:intergenic 30.0%
TAAGAATGTAGGCTTACAAT+AGG - chr6_4:88296275-88296294 None:intergenic 30.0%
GTAAAATATGAACCAAACCA+TGG - chr6_4:88296360-88296379 None:intergenic 30.0%
! GGACCCTATATTTTACAAAA+CGG - chr6_4:88296538-88296557 None:intergenic 30.0%
AAGTTATGATCAGTTGGAAT+TGG + chr6_4:88296647-88296666 Msa1002580:intron 30.0%
TCAGTATTTCCAGATGATTT+GGG - chr6_4:88296715-88296734 None:intergenic 30.0%
ATCAGTATTTCCAGATGATT+TGG - chr6_4:88296716-88296735 None:intergenic 30.0%
GTCTGATGAAGAAATTGAAA+GGG + chr6_4:88296740-88296759 Msa1002580:CDS 30.0%
AAGAAATTGAAAGGGTTTGA+TGG + chr6_4:88296748-88296767 Msa1002580:CDS 30.0%
CAACTGAGAGAAAGATAAAT+AGG - chr6_4:88296897-88296916 None:intergenic 30.0%
!! TTTCTCTCAGTTGATAAGAT+TGG + chr6_4:88296904-88296923 Msa1002580:intron 30.0%
ATGAACAATAGAGTTGTCAT+GGG + chr6_4:88297248-88297267 Msa1002580:intron 30.0%
TATATCATTGTTGCTCAGTA+AGG + chr6_4:88297346-88297365 Msa1002580:intron 30.0%
ATATCATTGTTGCTCAGTAA+GGG + chr6_4:88297347-88297366 Msa1002580:intron 30.0%
ATATCAATACGGTATGAAGT+CGG - chr6_4:88297453-88297472 None:intergenic 30.0%
! ACTTCATACCGTATTGATAT+TGG + chr6_4:88297453-88297472 Msa1002580:intron 30.0%
ATCAGAAACTGAGATTTCTT+TGG - chr6_4:88297616-88297635 None:intergenic 30.0%
ACAAATCCAAACATACCAAA+AGG - chr6_4:88297934-88297953 None:intergenic 30.0%
AGCAGGTATGATATAAATGT+TGG + chr6_4:88298029-88298048 Msa1002580:exon 30.0%
CTCAGAATCGTATATTAATC+AGG + chr6_4:88298095-88298114 Msa1002580:three_prime_UTR 30.0%
GATGGAAAATGTTGCATTAA+AGG + chr6_4:88298299-88298318 Msa1002580:three_prime_UTR 30.0%
TAATAATAATTCGGGAACTG+TGG + chr6_4:88298517-88298536 Msa1002580:three_prime_UTR 30.0%
! AAACCATGATCATGTAGTTT+TGG + chr6_4:88298647-88298666 Msa1002580:three_prime_UTR 30.0%
! AAACTGTTAGCAGTAGTTTT+GGG - chr6_4:88298684-88298703 None:intergenic 30.0%
!!! TGAATTAGTTCTGGTTTTGA+TGG - chr6_4:88298744-88298763 None:intergenic 30.0%
GATAAGCAATGAATTAGTTC+TGG - chr6_4:88298753-88298772 None:intergenic 30.0%
TTGCTTATCATCAGTTACTT+AGG + chr6_4:88298764-88298783 Msa1002580:three_prime_UTR 30.0%
ATGGTGTGTGTATTAATGAT+TGG + chr6_4:88298906-88298925 Msa1002580:three_prime_UTR 30.0%
! GGTATCTGATAAAGTTTTTC+TGG + chr6_4:88298944-88298963 Msa1002580:three_prime_UTR 30.0%
! TTCTTGTATACATTTGGCTT+TGG + chr6_4:88299006-88299025 Msa1002580:three_prime_UTR 30.0%
GCTCTGTTTGGTAAAAATAG+CGG - chr6_4:88294188-88294207 None:intergenic 35.0%
GTTGAATTTCGTAGGAGTTA+AGG - chr6_4:88294289-88294308 None:intergenic 35.0%
GAAAAAATGTTTGGTATGCG+AGG + chr6_4:88294680-88294699 Msa1002580:intron 35.0%
AATCTCCGCAATTCTTTGTT+CGG + chr6_4:88294719-88294738 Msa1002580:intron 35.0%
TCAATGTCTCTCTTTCTATC+CGG + chr6_4:88294770-88294789 Msa1002580:intron 35.0%
ATCACACTTTCTGTGAATCA+AGG + chr6_4:88294939-88294958 Msa1002580:intron 35.0%
ACTTGGTCAAAATCTGTAGA+AGG - chr6_4:88295457-88295476 None:intergenic 35.0%
AGCACCTAATGGAAAAAACT+TGG - chr6_4:88295474-88295493 None:intergenic 35.0%
ATGTTCATGTCTATCCTGAT+TGG + chr6_4:88295673-88295692 Msa1002580:CDS 35.0%
TGTTCATGTCTATCCTGATT+GGG + chr6_4:88295674-88295693 Msa1002580:CDS 35.0%
AAAAAGGTAAGTAACCTGCA+TGG - chr6_4:88295703-88295722 None:intergenic 35.0%
CCAGAGATAAACAACTCAAA+AGG - chr6_4:88295726-88295745 None:intergenic 35.0%
!!! CCTTTTGAGTTGTTTATCTC+TGG + chr6_4:88295723-88295742 Msa1002580:intron 35.0%
!!! TTGCTACCAAGTACTGATTT+TGG + chr6_4:88295798-88295817 Msa1002580:intron 35.0%
!! GGTAATATTTTGCTTTTCCC+TGG + chr6_4:88295831-88295850 Msa1002580:intron 35.0%
GCCTATGTTATTATTACCTG+TGG - chr6_4:88296100-88296119 None:intergenic 35.0%
GTTGCTTATTCATGTCATCT+AGG - chr6_4:88296159-88296178 None:intergenic 35.0%
TATGTTAATTGTCTGGACCA+TGG + chr6_4:88296340-88296359 Msa1002580:intron 35.0%
AAGGTAATCATAGTGTGGAA+AGG - chr6_4:88296432-88296451 None:intergenic 35.0%
GCATTAAGGTAATCATAGTG+TGG - chr6_4:88296437-88296456 None:intergenic 35.0%
AACGGAATTCATAAGATCGT+GGG - chr6_4:88296520-88296539 None:intergenic 35.0%
AAACGGAATTCATAAGATCG+TGG - chr6_4:88296521-88296540 None:intergenic 35.0%
GATGAAATTCCTTGACTATG+TGG - chr6_4:88296565-88296584 None:intergenic 35.0%
GCTATCAAGTTATGATCAGT+TGG + chr6_4:88296641-88296660 Msa1002580:intron 35.0%
ATCATCTGGAAATACTGATC+AGG + chr6_4:88296717-88296736 Msa1002580:CDS 35.0%
TCATCTGGAAATACTGATCA+GGG + chr6_4:88296718-88296737 Msa1002580:CDS 35.0%
GGTCTGATGAAGAAATTGAA+AGG + chr6_4:88296739-88296758 Msa1002580:CDS 35.0%
ATAGGATGTATGTATGCTCT+TGG - chr6_4:88296879-88296898 None:intergenic 35.0%
!! GGTCCATTTGTTTGTTATTG+TGG + chr6_4:88296925-88296944 Msa1002580:intron 35.0%
TATGAACAGTGTGAATACTG+AGG + chr6_4:88296971-88296990 Msa1002580:intron 35.0%
ATGAACAGTGTGAATACTGA+GGG + chr6_4:88296972-88296991 Msa1002580:intron 35.0%
ATAGGTGAAACAGTTGCATA+TGG - chr6_4:88297073-88297092 None:intergenic 35.0%
!! TGATTAGCCTGATCATAAGA+CGG - chr6_4:88297152-88297171 None:intergenic 35.0%
ATCAGGCTAATCAAACAAGA+AGG + chr6_4:88297159-88297178 Msa1002580:intron 35.0%
GATGAACAATAGAGTTGTCA+TGG + chr6_4:88297247-88297266 Msa1002580:intron 35.0%
TGTCAACCAGTTTATTGAGT+AGG + chr6_4:88297301-88297320 Msa1002580:intron 35.0%
GTCAACCAGTTTATTGAGTA+GGG + chr6_4:88297302-88297321 Msa1002580:intron 35.0%
TATCATTGTTGCTCAGTAAG+GGG + chr6_4:88297348-88297367 Msa1002580:intron 35.0%
TTCTCTACTGTTTAAGCAGA+TGG + chr6_4:88297555-88297574 Msa1002580:intron 35.0%
CTCAGTTTCTGATAAGATGA+TGG + chr6_4:88297623-88297642 Msa1002580:CDS 35.0%
AATCAAATCGAGAATCTGCT+AGG + chr6_4:88297990-88298009 Msa1002580:CDS 35.0%
CTTTATCAAGTGTGTGACAT+GGG - chr6_4:88298126-88298145 None:intergenic 35.0%
TCTTTATCAAGTGTGTGACA+TGG - chr6_4:88298127-88298146 None:intergenic 35.0%
TGTGACAACAAACCAAATTC+TGG + chr6_4:88298557-88298576 Msa1002580:three_prime_UTR 35.0%
ATGCCAAAACTACATGATCA+TGG - chr6_4:88298653-88298672 None:intergenic 35.0%
! GAAACTGTTAGCAGTAGTTT+TGG - chr6_4:88298685-88298704 None:intergenic 35.0%
AACCGTCGCGTAATATATTA+TGG + chr6_4:88298887-88298906 Msa1002580:three_prime_UTR 35.0%
CACCATAATATATTACGCGA+CGG - chr6_4:88298892-88298911 None:intergenic 35.0%
!!! TTTCTGGCTTTTTCATTCTG+TGG + chr6_4:88298960-88298979 Msa1002580:three_prime_UTR 35.0%
!! TTTGGCCTTATATTTGACAC+AGG + chr6_4:88299024-88299043 Msa1002580:three_prime_UTR 35.0%
TCGTAGGAGTTAAGGTTAAG+TGG - chr6_4:88294281-88294300 None:intergenic 40.0%
ATCTCCGCAATTCTTTGTTC+GGG + chr6_4:88294720-88294739 Msa1002580:intron 40.0%
TGTTCGGGGTAGATTTGATT+TGG + chr6_4:88294735-88294754 Msa1002580:intron 40.0%
AAAGAGAGACATTGACAACG+AGG - chr6_4:88294765-88294784 None:intergenic 40.0%
! CTTTTCACAATACCACAAGC+CGG - chr6_4:88294792-88294811 None:intergenic 40.0%
!! AGTGTTAGCCTTCTCATTAG+TGG + chr6_4:88294981-88295000 Msa1002580:intron 40.0%
CAGAGAAACCACTAATGAGA+AGG - chr6_4:88294992-88295011 None:intergenic 40.0%
TGCTTACATATAGAGACGGA+GGG - chr6_4:88295087-88295106 None:intergenic 40.0%
!! TCTATATGTAAGCACCGGAA+AGG + chr6_4:88295093-88295112 Msa1002580:intron 40.0%
!! CTATATGTAAGCACCGGAAA+GGG + chr6_4:88295094-88295113 Msa1002580:intron 40.0%
CTATATGTAAGCACCCTTTC+CGG - chr6_4:88295110-88295129 None:intergenic 40.0%
!! GGAAAGGGTGCTTACATATA+GGG + chr6_4:88295109-88295128 Msa1002580:intron 40.0%
! TGCTAGCTTAAGAAGTCAAC+CGG + chr6_4:88295248-88295267 Msa1002580:intron 40.0%
AAGTTTGCAAAGTAACCTCC+CGG - chr6_4:88295270-88295289 None:intergenic 40.0%
CATGTTGCATTCATAGTCGT+TGG + chr6_4:88295389-88295408 Msa1002580:intron 40.0%
TTTCCATTAGGTGCTTGCAA+TGG + chr6_4:88295479-88295498 Msa1002580:intron 40.0%
TTCCATTAGGTGCTTGCAAT+GGG + chr6_4:88295480-88295499 Msa1002580:intron 40.0%
CAGTCTTGGTAGATTTCTCT+TGG - chr6_4:88295515-88295534 None:intergenic 40.0%
! TGAAGAAGGCTTTTCAGTCT+TGG - chr6_4:88295529-88295548 None:intergenic 40.0%
TAAATGCAACCACACGACAT+AGG - chr6_4:88295587-88295606 None:intergenic 40.0%
GATAGACATGAACATTCGTC+TGG - chr6_4:88295668-88295687 None:intergenic 40.0%
! CAGTACTTGGTAGCAATACA+AGG - chr6_4:88295794-88295813 None:intergenic 40.0%
TAGGTGCCAAAATCAGTACT+TGG - chr6_4:88295807-88295826 None:intergenic 40.0%
!!! TACTGATTTTGGCACCTAGT+TGG + chr6_4:88295809-88295828 Msa1002580:intron 40.0%
!! ACTGATTTTGGCACCTAGTT+GGG + chr6_4:88295810-88295829 Msa1002580:intron 40.0%
TGTGGATACATTGCTGCATA+AGG - chr6_4:88296224-88296243 None:intergenic 40.0%
TATGCAGCAATGTATCCACA+TGG + chr6_4:88296224-88296243 Msa1002580:CDS 40.0%
TAATTGTCTGGACCATGGTT+TGG + chr6_4:88296345-88296364 Msa1002580:intron 40.0%
! GGAAAGGTTATTGATAGCAG+AGG - chr6_4:88296416-88296435 None:intergenic 40.0%
ACGGAATTCATAAGATCGTG+GGG - chr6_4:88296519-88296538 None:intergenic 40.0%
ATTCCTTGACTATGTGGATG+TGG - chr6_4:88296559-88296578 None:intergenic 40.0%
AATTGGTACAACTTGCAGAC+TGG + chr6_4:88296664-88296683 Msa1002580:intron 40.0%
! GTATTTCCAGATGATTTGGG+AGG - chr6_4:88296712-88296731 None:intergenic 40.0%
! GATGGACTTGCAATGTCAAT+AGG + chr6_4:88296766-88296785 Msa1002580:CDS 40.0%
CTTGCAATGTCAATAGGCAA+TGG + chr6_4:88296772-88296791 Msa1002580:CDS 40.0%
TATTTGCCCGTCTTATGATC+AGG + chr6_4:88297142-88297161 Msa1002580:intron 40.0%
!! GATTAGCCTGATCATAAGAC+GGG - chr6_4:88297151-88297170 None:intergenic 40.0%
GTTCATCAAGATGTGACACT+TGG - chr6_4:88297234-88297253 None:intergenic 40.0%
! ACGTTGTAGACTCTAAAGAG+TGG + chr6_4:88297411-88297430 Msa1002580:intron 40.0%
CGGTATGAAGTCGGAAATAT+GGG - chr6_4:88297444-88297463 None:intergenic 40.0%
ACGGTATGAAGTCGGAAATA+TGG - chr6_4:88297445-88297464 None:intergenic 40.0%
ACTGTTTAAGCAGATGGAGA+AGG + chr6_4:88297561-88297580 Msa1002580:intron 40.0%
CTGTTTAAGCAGATGGAGAA+GGG + chr6_4:88297562-88297581 Msa1002580:intron 40.0%
GAAGGGAAAACTCATACACA+AGG + chr6_4:88297579-88297598 Msa1002580:CDS 40.0%
! AACTTTTCGTGCCAGTTCTT+CGG - chr6_4:88298206-88298225 None:intergenic 40.0%
CTGAGAAATCTGAAAGACTG+AGG + chr6_4:88298277-88298296 Msa1002580:three_prime_UTR 40.0%
GAAATCTGAAAGACTGAGGA+TGG + chr6_4:88298281-88298300 Msa1002580:three_prime_UTR 40.0%
! CATGTCACTGTGTTATTCTG+TGG + chr6_4:88298355-88298374 Msa1002580:intron 40.0%
! GTTTTCTGTACTTACAGGTG+CGG - chr6_4:88298483-88298502 None:intergenic 40.0%
TAATAATTCGGGAACTGTGG+AGG + chr6_4:88298520-88298539 Msa1002580:three_prime_UTR 40.0%
TAGGACTTGCATCCAATAGT+TGG - chr6_4:88298595-88298614 None:intergenic 40.0%
ACTACTGCTAACAGTTTCTG+AGG + chr6_4:88298687-88298706 Msa1002580:three_prime_UTR 40.0%
CTACTGCTAACAGTTTCTGA+GGG + chr6_4:88298688-88298707 Msa1002580:three_prime_UTR 40.0%
TACTGCTAACAGTTTCTGAG+GGG + chr6_4:88298689-88298708 Msa1002580:three_prime_UTR 40.0%
GATTGGTGTGCACCTTATAA+TGG + chr6_4:88298923-88298942 Msa1002580:three_prime_UTR 40.0%
GCCTTATATTTGACACAGGA+GGG + chr6_4:88299028-88299047 Msa1002580:three_prime_UTR 40.0%
TCCCTCCTGTGTCAAATATA+AGG - chr6_4:88299032-88299051 None:intergenic 40.0%
! TCTCTCTCTATGGCTCTGTT+TGG - chr6_4:88294200-88294219 None:intergenic 45.0%
TTTCACATGGGGTCAAGGAA+TGG - chr6_4:88294658-88294677 None:intergenic 45.0%
TTCACTTTCACATGGGGTCA+AGG - chr6_4:88294663-88294682 None:intergenic 45.0%
TCTCCGCAATTCTTTGTTCG+GGG + chr6_4:88294721-88294740 Msa1002580:intron 45.0%
CTACCCCGAACAAAGAATTG+CGG - chr6_4:88294727-88294746 None:intergenic 45.0%
GTCAAAGACACACTAGTGGA+GGG - chr6_4:88294825-88294844 None:intergenic 45.0%
AGTCAAAGACACACTAGTGG+AGG - chr6_4:88294826-88294845 None:intergenic 45.0%
GTGAGTCAAAGACACACTAG+TGG - chr6_4:88294829-88294848 None:intergenic 45.0%
GTGCTTACATATAGAGACGG+AGG - chr6_4:88295088-88295107 None:intergenic 45.0%
CCGGTGCTTACATATAGAGA+CGG - chr6_4:88295091-88295110 None:intergenic 45.0%
CCGTCTCTATATGTAAGCAC+CGG + chr6_4:88295088-88295107 Msa1002580:intron 45.0%
!! CGGAAAGGGTGCTTACATAT+AGG + chr6_4:88295108-88295127 Msa1002580:intron 45.0%
! AGGGTGCTTACATATAGGGA+CGG + chr6_4:88295113-88295132 Msa1002580:intron 45.0%
TGCTTACATATAGGGACGGA+GGG + chr6_4:88295117-88295136 Msa1002580:intron 45.0%
! GCTAGCTTAAGAAGTCAACC+GGG + chr6_4:88295249-88295268 Msa1002580:intron 45.0%
TTCCCATTGCAAGCACCTAA+TGG - chr6_4:88295485-88295504 None:intergenic 45.0%
ACCACTGTTACAGGTGAAGA+AGG - chr6_4:88295543-88295562 None:intergenic 45.0%
TCTACTGTTCCTATGTCGTG+TGG + chr6_4:88295575-88295594 Msa1002580:intron 45.0%
GACATGAACATTCGTCTGGT+TGG - chr6_4:88295664-88295683 None:intergenic 45.0%
TGAGTTGTAGTAAGGTGGCA+TGG - chr6_4:88296032-88296051 None:intergenic 45.0%
ACCTTACTACAACTCACCTG+CGG + chr6_4:88296036-88296055 Msa1002580:CDS 45.0%
ACACTCCTCACCCATATATG+TGG + chr6_4:88296068-88296087 Msa1002580:CDS 45.0%
CACTCCTCACCCATATATGT+GGG + chr6_4:88296069-88296088 Msa1002580:CDS 45.0%
ACTCCTCACCCATATATGTG+GGG + chr6_4:88296070-88296089 Msa1002580:CDS 45.0%
CAGCATATGATGCCACCTTA+TGG + chr6_4:88296194-88296213 Msa1002580:intron 45.0%
GCATAAGGATGTCCATAAGG+TGG - chr6_4:88296209-88296228 None:intergenic 45.0%
GCTGCATAAGGATGTCCATA+AGG - chr6_4:88296212-88296231 None:intergenic 45.0%
CAGCAATGTATCCACATGGA+GGG + chr6_4:88296228-88296247 Msa1002580:CDS 45.0%
AGCAATGTATCCACATGGAG+GGG + chr6_4:88296229-88296248 Msa1002580:CDS 45.0%
TGAGTATAAACCCCTCCATG+TGG - chr6_4:88296242-88296261 None:intergenic 45.0%
GGCTTACAATAGGAACTGCA+GGG - chr6_4:88296265-88296284 None:intergenic 45.0%
AGGCTTACAATAGGAACTGC+AGG - chr6_4:88296266-88296285 None:intergenic 45.0%
!! GGAGGTGTCTCTATGCTTAA+AGG - chr6_4:88296694-88296713 None:intergenic 45.0%
AATACTGAGGGTTCGAGTGA+TGG + chr6_4:88296984-88297003 Msa1002580:CDS 45.0%
AAGAAGGAAAAGAAGCCGTG+AGG + chr6_4:88297175-88297194 Msa1002580:CDS 45.0%
AGAAGGAAAAGAAGCCGTGA+GGG + chr6_4:88297176-88297195 Msa1002580:CDS 45.0%
AACAGAGTCATACCAGTGGT+CGG - chr6_4:88297206-88297225 None:intergenic 45.0%
GAAGAACAGAGTCATACCAG+TGG - chr6_4:88297210-88297229 None:intergenic 45.0%
CCAGACCCTACTCAATAAAC+TGG - chr6_4:88297310-88297329 None:intergenic 45.0%
CCAGTTTATTGAGTAGGGTC+TGG + chr6_4:88297307-88297326 Msa1002580:intron 45.0%
! GGTGTCACAGGTCAATTAGT+TGG + chr6_4:88297660-88297679 Msa1002580:CDS 45.0%
CAAATCGAGAATCTGCTAGG+AGG + chr6_4:88297993-88298012 Msa1002580:CDS 45.0%
TCATACCTGCTTCCTTAGTC+TGG - chr6_4:88298020-88298039 None:intergenic 45.0%
TGATGCACTCTCAGCATTCA+AGG - chr6_4:88298233-88298252 None:intergenic 45.0%
GGAACTGTGGAGGATGAAAA+TGG + chr6_4:88298530-88298549 Msa1002580:three_prime_UTR 45.0%
TGCAACTTCGCACCAGAATT+TGG - chr6_4:88298572-88298591 None:intergenic 45.0%
TGCGAAGTTGCACCAACTAT+TGG + chr6_4:88298580-88298599 Msa1002580:three_prime_UTR 45.0%
! GGCCTTATATTTGACACAGG+AGG + chr6_4:88299027-88299046 Msa1002580:three_prime_UTR 45.0%
!!! ATTATTTTAAAATCATTAAA+AGG - chr6_4:88297910-88297929 None:intergenic 5.0%
! CTCTCTTTCTATCCGGCTTG+TGG + chr6_4:88294777-88294796 Msa1002580:intron 50.0%
GTGCTTACATATAGGGACGG+AGG + chr6_4:88295116-88295135 Msa1002580:intron 50.0%
AGCTTAAGAAGTCAACCGGG+AGG + chr6_4:88295252-88295271 Msa1002580:intron 50.0%
GCCTTCTTCACCTGTAACAG+TGG + chr6_4:88295539-88295558 Msa1002580:CDS 50.0%
GTAGAGCTCACCACTGTTAC+AGG - chr6_4:88295552-88295571 None:intergenic 50.0%
TAAGGTGGCATGGCAACTCT+TGG - chr6_4:88296022-88296041 None:intergenic 50.0%
GCAGGTGAGTTGTAGTAAGG+TGG - chr6_4:88296037-88296056 None:intergenic 50.0%
CTCCTCACCCATATATGTGG+GGG + chr6_4:88296071-88296090 Msa1002580:CDS 50.0%
GCAGCAATGTATCCACATGG+AGG + chr6_4:88296227-88296246 Msa1002580:CDS 50.0%
GGTCCACATCCACATAGTCA+AGG + chr6_4:88296553-88296572 Msa1002580:CDS 50.0%
GAGACACCTCCCAAATCATC+TGG + chr6_4:88296703-88296722 Msa1002580:CDS 50.0%
CTGAAAGCAGGCAATCACAG+AGG + chr6_4:88296821-88296840 Msa1002580:CDS 50.0%
! GGTTCGAGTGATGGAAGTGA+CGG + chr6_4:88296993-88297012 Msa1002580:CDS 50.0%
GAAGTGACGGCAACACTTCA+GGG + chr6_4:88297006-88297025 Msa1002580:CDS 50.0%
AAGTGACGGCAACACTTCAG+GGG + chr6_4:88297007-88297026 Msa1002580:CDS 50.0%
ACACTTCAGGGGTGAGTACT+TGG + chr6_4:88297018-88297037 Msa1002580:intron 50.0%
ATTGACCTGTGACACCAGCA+GGG - chr6_4:88297656-88297675 None:intergenic 50.0%
AATTGACCTGTGACACCAGC+AGG - chr6_4:88297657-88297676 None:intergenic 50.0%
GTCATCGCTGAAGAAACTGC+AGG - chr6_4:88297687-88297706 None:intergenic 50.0%
AGAATTTCTCAGCTCCAGCG+CGG - chr6_4:88297712-88297731 None:intergenic 50.0%
CAATGCAGCAGAAGGTTGTG+GGG - chr6_4:88297769-88297788 None:intergenic 50.0%
GCAATGCAGCAGAAGGTTGT+GGG - chr6_4:88297770-88297789 None:intergenic 50.0%
TGACCAACATTGACAGCCAG+AGG + chr6_4:88298456-88298475 Msa1002580:three_prime_UTR 50.0%
AAGTCCTAGAGCTGATGCTG+TGG + chr6_4:88298607-88298626 Msa1002580:three_prime_UTR 50.0%
! GCTAACAGTTTCTGAGGGGA+TGG + chr6_4:88298693-88298712 Msa1002580:three_prime_UTR 50.0%
GCCGCAGGTGAGTTGTAGTA+AGG - chr6_4:88296040-88296059 None:intergenic 55.0%
TACAACTCACCTGCGGCTTC+TGG + chr6_4:88296043-88296062 Msa1002580:CDS 55.0%
GTGGTGGCCCCCACATATAT+GGG - chr6_4:88296081-88296100 None:intergenic 55.0%
TGTGGTGGCCCCCACATATA+TGG - chr6_4:88296082-88296101 None:intergenic 55.0%
ATATATGTGGGGGCCACCAC+AGG + chr6_4:88296081-88296100 Msa1002580:CDS 55.0%
GATTGCCTGCTTTCAGCTCC+AGG - chr6_4:88296817-88296836 None:intergenic 55.0%
GGAAGTGACGGCAACACTTC+AGG + chr6_4:88297005-88297024 Msa1002580:CDS 55.0%
TTGACCTGTGACACCAGCAG+GGG - chr6_4:88297655-88297674 None:intergenic 55.0%
! GAAGGTTGTGGGGCACTTGT+GGG - chr6_4:88297759-88297778 None:intergenic 55.0%
! AGAAGGTTGTGGGGCACTTG+TGG - chr6_4:88297760-88297779 None:intergenic 55.0%
GGCAATGCAGCAGAAGGTTG+TGG - chr6_4:88297771-88297790 None:intergenic 55.0%
CGTACCTGTATCCAAGCCTC+GGG - chr6_4:88297795-88297814 None:intergenic 55.0%
CCGTACCTGTATCCAAGCCT+CGG - chr6_4:88297796-88297815 None:intergenic 55.0%
CCGAGGCTTGGATACAGGTA+CGG + chr6_4:88297793-88297812 Msa1002580:intron 55.0%
AGCGTGAACTGAAGCGTGAG+AGG + chr6_4:88297960-88297979 Msa1002580:CDS 55.0%
GTGAACTGAAGCGTGAGAGG+AGG + chr6_4:88297963-88297982 Msa1002580:CDS 55.0%
CTGCTAGGAGGTCCAGACTA+AGG + chr6_4:88298005-88298024 Msa1002580:CDS 55.0%
GAGGTCCAGACTAAGGAAGC+AGG + chr6_4:88298012-88298031 Msa1002580:CDS 55.0%
CGTGCTTATTCCCTCCCTTC+AGG + chr6_4:88298174-88298193 Msa1002580:three_prime_UTR 55.0%
TATTCCCTCCCTTCAGGCTG+AGG + chr6_4:88298180-88298199 Msa1002580:three_prime_UTR 55.0%
TTCTTCGGCCTCAGCCTGAA+GGG - chr6_4:88298191-88298210 None:intergenic 55.0%
GGTCCTCTGGCTGTCAATGT+TGG - chr6_4:88298462-88298481 None:intergenic 55.0%
TACTTACAGGTGCGGTCCTC+TGG - chr6_4:88298475-88298494 None:intergenic 55.0%
TCCTGATTGGGCAGCCATGC+AGG + chr6_4:88295686-88295705 Msa1002580:CDS 60.0%
ACCTGCATGGCTGCCCAATC+AGG - chr6_4:88295690-88295709 None:intergenic 60.0%
GGCCCCCACATATATGGGTG+AGG - chr6_4:88296076-88296095 None:intergenic 60.0%
CAGGCTCAGCACTCTCAGCA+TGG - chr6_4:88296798-88296817 None:intergenic 60.0%
!! CATGCTGAGAGTGCTGAGCC+TGG + chr6_4:88296796-88296815 Msa1002580:CDS 60.0%
CTGAGCCTGGAGCTGAAAGC+AGG + chr6_4:88296809-88296828 Msa1002580:CDS 60.0%
! CAGTGGTCGGTGTTCCCTCA+CGG - chr6_4:88297193-88297212 None:intergenic 60.0%
ATGATGGCAGTTGCCCCTGC+TGG + chr6_4:88297639-88297658 Msa1002580:CDS 60.0%
ATTTCTCAGCTCCAGCGCGG+TGG - chr6_4:88297709-88297728 None:intergenic 60.0%
TCGGGAGGCAATGCAGCAGA+AGG - chr6_4:88297777-88297796 None:intergenic 60.0%
TTCTGCTGCATTGCCTCCCG+AGG + chr6_4:88297776-88297795 Msa1002580:CDS 60.0%
ACCTGTATCCAAGCCTCGGG+AGG - chr6_4:88297792-88297811 None:intergenic 60.0%
GTTCTTCGGCCTCAGCCTGA+AGG - chr6_4:88298192-88298211 None:intergenic 60.0%
TCAGGCTGAGGCCGAAGAAC+TGG + chr6_4:88298192-88298211 Msa1002580:three_prime_UTR 60.0%
GCAGCCACAGCATCAGCTCT+AGG - chr6_4:88298614-88298633 None:intergenic 60.0%
AGAGCTGATGCTGTGGCTGC+TGG + chr6_4:88298614-88298633 Msa1002580:three_prime_UTR 60.0%
GGAGTGTGACCAGAAGCCGC+AGG - chr6_4:88296055-88296074 None:intergenic 65.0%
CGTGAGGGAACACCGACCAC+TGG + chr6_4:88297191-88297210 Msa1002580:CDS 65.0%
!! GTTGCCCCTGCTGGTGTCAC+AGG + chr6_4:88297648-88297667 Msa1002580:CDS 65.0%
TTCAGCGATGACCACCGCGC+TGG + chr6_4:88297695-88297714 Msa1002580:CDS 65.0%
CTGCATTGCCTCCCGAGGCT+TGG + chr6_4:88297781-88297800 Msa1002580:CDS 65.0%
GCCTCCCGAGGCTTGGATAC+AGG + chr6_4:88297788-88297807 Msa1002580:CDS 65.0%
TCGGCCTCAGCCTGAAGGGA+GGG - chr6_4:88298187-88298206 None:intergenic 65.0%
TTCGGCCTCAGCCTGAAGGG+AGG - chr6_4:88298188-88298207 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 88294181 88299068 88294181 ID=Msa1002580;Name=Msa1002580
chr6_4 mRNA 88294181 88299068 88294181 ID=Msa1002580-mRNA-1;Parent=Msa1002580;Name=Msa1002580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=171|1|1|1|0.90|0.75|12|940|304
chr6_4 exon 88294181 88294342 88294181 ID=Msa1002580-mRNA-1:exon:17246;Parent=Msa1002580-mRNA-1
chr6_4 exon 88295489 88295560 88295489 ID=Msa1002580-mRNA-1:exon:17247;Parent=Msa1002580-mRNA-1
chr6_4 exon 88295654 88295707 88295654 ID=Msa1002580-mRNA-1:exon:17248;Parent=Msa1002580-mRNA-1
chr6_4 exon 88296007 88296102 88296007 ID=Msa1002580-mRNA-1:exon:17249;Parent=Msa1002580-mRNA-1
chr6_4 exon 88296197 88296277 88296197 ID=Msa1002580-mRNA-1:exon:17250;Parent=Msa1002580-mRNA-1
chr6_4 exon 88296553 88296594 88296553 ID=Msa1002580-mRNA-1:exon:17251;Parent=Msa1002580-mRNA-1
chr6_4 exon 88296682 88296842 88296682 ID=Msa1002580-mRNA-1:exon:17252;Parent=Msa1002580-mRNA-1
chr6_4 exon 88296980 88297028 88296980 ID=Msa1002580-mRNA-1:exon:17253;Parent=Msa1002580-mRNA-1
chr6_4 exon 88297164 88297212 88297164 ID=Msa1002580-mRNA-1:exon:17254;Parent=Msa1002580-mRNA-1
chr6_4 exon 88297574 88297809 88297574 ID=Msa1002580-mRNA-1:exon:17255;Parent=Msa1002580-mRNA-1
chr6_4 exon 88297956 88298320 88297956 ID=Msa1002580-mRNA-1:exon:17256;Parent=Msa1002580-mRNA-1
chr6_4 exon 88298410 88299068 88298410 ID=Msa1002580-mRNA-1:exon:17257;Parent=Msa1002580-mRNA-1
chr6_4 five_prime_UTR 88294181 88294342 88294181 ID=Msa1002580-mRNA-1:five_prime_utr;Parent=Msa1002580-mRNA-1
chr6_4 five_prime_UTR 88295489 88295497 88295489 ID=Msa1002580-mRNA-1:five_prime_utr;Parent=Msa1002580-mRNA-1
chr6_4 CDS 88295498 88295560 88295498 ID=Msa1002580-mRNA-1:cds;Parent=Msa1002580-mRNA-1
chr6_4 CDS 88295654 88295707 88295654 ID=Msa1002580-mRNA-1:cds;Parent=Msa1002580-mRNA-1
chr6_4 CDS 88296007 88296102 88296007 ID=Msa1002580-mRNA-1:cds;Parent=Msa1002580-mRNA-1
chr6_4 CDS 88296197 88296277 88296197 ID=Msa1002580-mRNA-1:cds;Parent=Msa1002580-mRNA-1
chr6_4 CDS 88296553 88296594 88296553 ID=Msa1002580-mRNA-1:cds;Parent=Msa1002580-mRNA-1
chr6_4 CDS 88296682 88296842 88296682 ID=Msa1002580-mRNA-1:cds;Parent=Msa1002580-mRNA-1
chr6_4 CDS 88296980 88297028 88296980 ID=Msa1002580-mRNA-1:cds;Parent=Msa1002580-mRNA-1
chr6_4 CDS 88297164 88297212 88297164 ID=Msa1002580-mRNA-1:cds;Parent=Msa1002580-mRNA-1
chr6_4 CDS 88297574 88297809 88297574 ID=Msa1002580-mRNA-1:cds;Parent=Msa1002580-mRNA-1
chr6_4 CDS 88297956 88298039 88297956 ID=Msa1002580-mRNA-1:cds;Parent=Msa1002580-mRNA-1
chr6_4 three_prime_UTR 88298040 88298320 88298040 ID=Msa1002580-mRNA-1:three_prime_utr;Parent=Msa1002580-mRNA-1
chr6_4 three_prime_UTR 88298410 88299068 88298410 ID=Msa1002580-mRNA-1:three_prime_utr;Parent=Msa1002580-mRNA-1
Gene Sequence

>Msa1002580

ATGGGAAATAGTGACCAAGAGAAATCTACCAAGACTGAAAAGCCTTCTTCACCTGTAACAGTGGATCAGACCAACCAGACGAATGTTCATGTCTATCCTGATTGGGCAGCCATGCAGGCATATTATGGACCAAGAGTTGCCATGCCACCTTACTACAACTCACCTGCGGCTTCTGGTCACACTCCTCACCCATATATGTGGGGGCCACCACAGCATATGATGCCACCTTATGGACATCCTTATGCAGCAATGTATCCACATGGAGGGGTTTATACTCACCCTGCAGTTCCTATTGGTCCACATCCACATAGTCAAGGAATTTCATCTTCACCTGCTACTGGAACTCCTTTAAGCATAGAGACACCTCCCAAATCATCTGGAAATACTGATCAGGGTCTGATGAAGAAATTGAAAGGGTTTGATGGACTTGCAATGTCAATAGGCAATGGCCATGCTGAGAGTGCTGAGCCTGGAGCTGAAAGCAGGCAATCACAGAGTGTGAATACTGAGGGTTCGAGTGATGGAAGTGACGGCAACACTTCAGGGGCTAATCAAACAAGAAGGAAAAGAAGCCGTGAGGGAACACCGACCACTGATGGAGAAGGGAAAACTCATACACAAGGTAGTCAAGTTTCCAAAGAAATCTCAGTTTCTGATAAGATGATGGCAGTTGCCCCTGCTGGTGTCACAGGTCAATTAGTTGGACCTGCAGTTTCTTCAGCGATGACCACCGCGCTGGAGCTGAGAAATTCTTCCAGTGTTCATTCTAAAATAAATCCCACAAGTGCCCCACAACCTTCTGCTGCATTGCCTCCCGAGGCTTGGATACAGAATGAGCGTGAACTGAAGCGTGAGAGGAGGAAACAATCAAATCGAGAATCTGCTAGGAGGTCCAGACTAAGGAAGCAGGTATGA
Protein sequence

>Msa1002580

MGNSDQEKSTKTEKPSSPVTVDQTNQTNVHVYPDWAAMQAYYGPRVAMPPYYNSPAASGHTPHPYMWGPPQHMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQGISSSPATGTPLSIETPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEPGAESRQSQSVNTEGSSDGSDGNTSGANQTRRKRSREGTPTTDGEGKTHTQGSQVSKEISVSDKMMAVAPAGVTGQLVGPAVSSAMTTALELRNSSSVHSKINPTSAPQPSAALPPEAWIQNERELKRERRKQSNRESARRSRLRKQV*