AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130170 MtrunA17_Chr7g0275321 95.529 425 15 1 1 421 1 425 0.0 830
Msa1130170 MtrunA17_Chr8g0347741 69.159 428 117 7 1 420 1 421 0.0 573
Msa1130170 MtrunA17_Chr5g0410531 38.860 386 187 16 1 348 1 375 1.11e-61 204
Msa1130170 MtrunA17_Chr8g0369161 36.815 383 198 14 1 348 1 374 8.60e-58 194
Msa1130170 MtrunA17_Chr8g0373571 36.637 333 162 10 32 349 30 328 3.78e-44 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130170 AT2G46270.1 53.935 432 138 14 1 421 1 382 1.52e-133 389
Msa1130170 AT2G46270.3 53.935 432 138 14 1 421 1 382 1.52e-133 389
Msa1130170 AT2G46270.2 51.756 427 132 13 1 421 1 359 1.93e-122 360
Msa1130170 AT2G46270.4 51.756 427 132 13 1 421 1 359 1.93e-122 360
Msa1130170 AT4G01120.1 44.731 427 161 14 1 420 1 359 9.97e-87 268
Msa1130170 AT2G35530.1 38.736 364 177 13 33 367 42 388 2.29e-53 183
Msa1130170 AT1G32150.1 38.381 383 186 16 1 351 1 365 4.82e-50 174
Msa1130170 AT4G36730.1 36.080 352 160 12 1 349 1 290 1.34e-45 160
Msa1130170 AT4G36730.2 35.511 352 160 12 1 349 1 288 1.68e-44 157

Find 150 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTTAGATTTGACAAATA+TGG 0.192952 7_3:+82288577 Msa1130170:three_prime_UTR
ATCAGTATTTCCAGATGATT+TGG 0.227999 7_3:-82286487 None:intergenic
TGCAACTTCGCACCAGAATT+TGG 0.240869 7_3:-82288344 None:intergenic
GGAGGTGTCTCTATGCTTAA+AGG 0.248730 7_3:-82286465 None:intergenic
CTATATCTTCAGGCATATTA+TGG 0.258289 7_3:+82285769 Msa1130170:intron
GATGGAAAATGTTGCATTAA+AGG 0.262914 7_3:+82288074 Msa1130170:CDS
ATCAGAAACTGAGATTTCTT+TGG 0.279786 7_3:-82287387 None:intergenic
GAAACTGTTAGCAGTAGTTT+TGG 0.280786 7_3:-82288457 None:intergenic
ATCAAGAGTTAATAATAATT+CGG 0.281960 7_3:+82288283 Msa1130170:CDS
AAACCATGATCATGTAGTTT+TGG 0.290045 7_3:+82288422 Msa1130170:three_prime_UTR
AAAATTTAAAATTGCTCAAC+TGG 0.296427 7_3:+82288187 Msa1130170:CDS
GGAAGTGACGGCAACACTTC+AGG 0.299939 7_3:+82286779 Msa1130170:CDS
TGTGACAACAAACCAAATTC+TGG 0.315200 7_3:+82288332 Msa1130170:CDS
TTCTTGTATACATTTGGCTT+TGG 0.319742 7_3:+82288781 Msa1130170:three_prime_UTR
TTGTCTTTCTTGTATACATT+TGG 0.321803 7_3:+82288775 Msa1130170:three_prime_UTR
TCCCTCCTGTGTCAAATATA+AGG 0.324549 7_3:-82288804 None:intergenic
TTGGTCAAAATTATCTCTTT+TGG 0.325531 7_3:-82288215 None:intergenic
TACTTACAGGTGCGGTCCTC+TGG 0.332601 7_3:-82288247 None:intergenic
CAGCATATGATGCCACCTTA+TGG 0.338444 7_3:+82285968 Msa1130170:intron
CAGTCTTGGTAGATTTCTCT+TGG 0.342025 7_3:-82285287 None:intergenic
AACCGTCGCGTAATATATTA+TGG 0.344543 7_3:+82288662 Msa1130170:three_prime_UTR
GTAGAGCTCACCACTGTTAC+AGG 0.347150 7_3:-82285324 None:intergenic
GATAAGCAATGAATTAGTTC+TGG 0.347793 7_3:-82288525 None:intergenic
AAGAAATTGAAAGGGTTTGA+TGG 0.347852 7_3:+82286522 Msa1130170:CDS
TACAACTCACCTGTGGCTTC+TGG 0.358055 7_3:+82285817 Msa1130170:CDS
TCAAGAGTTAATAATAATTC+GGG 0.358553 7_3:+82288284 Msa1130170:CDS
GTTGAATTTCGTAGGAGTTA+AGG 0.362944 7_3:-82284059 None:intergenic
CTTTATCAGATACCATTATA+AGG 0.363208 7_3:-82288710 None:intergenic
TCAGGCTGAGGCCGAAGAAC+TGG 0.370336 7_3:+82287966 Msa1130170:intron
ACCTGCATGGCTGCCCAATC+AGG 0.376559 7_3:-82285462 None:intergenic
GGCAATGCAGCAGAAGGTTG+TGG 0.378841 7_3:-82287542 None:intergenic
GATGGACTTGCAATGTCAAT+AGG 0.380086 7_3:+82286540 Msa1130170:CDS
GTTGCCCCTGCTGGTGTCAC+AGG 0.389453 7_3:+82287422 Msa1130170:CDS
GATTGCCTGCTTTCAGCTCC+AGG 0.391527 7_3:-82286588 None:intergenic
GGAACTGTGGAGGATGAAAA+TGG 0.395483 7_3:+82288305 Msa1130170:CDS
TTGCTTATCATCAGTTACTT+AGG 0.395524 7_3:+82288539 Msa1130170:three_prime_UTR
TCATACCTGCTTCCTTAGTC+TGG 0.402601 7_3:-82287791 None:intergenic
AGAGCTGATGCTGTGGCTGC+TGG 0.414627 7_3:+82288389 Msa1130170:CDS
TCCTGATTGGGCAGCCATGC+AGG 0.414803 7_3:+82285461 Msa1130170:CDS
TTCCATTAGGTGCTTGCAAT+GGG 0.421607 7_3:+82285255 Msa1130170:intron
CATGCTGAGAGTGCTGAGCC+TGG 0.423095 7_3:+82286570 Msa1130170:CDS
TGATGCACTCTCAGCATTCA+AGG 0.423689 7_3:-82288004 None:intergenic
TGCGAAGTTGCACCAACTAT+TGG 0.423928 7_3:+82288355 Msa1130170:CDS
ATCATCTGGAAATACTGATC+AGG 0.424963 7_3:+82286491 Msa1130170:CDS
TCAGTATTTCCAGATGATTT+GGG 0.427807 7_3:-82286486 None:intergenic
CTGCATTGCCTCCCGAGGCT+TGG 0.430381 7_3:+82287555 Msa1130170:CDS
ATGTTCATGTCTATCCTGAT+TGG 0.430637 7_3:+82285448 Msa1130170:CDS
GCCTCCCGAGGCTTGGATAC+AGG 0.438943 7_3:+82287562 Msa1130170:CDS
GATTGGTGTGCACCTTATAA+TGG 0.439174 7_3:+82288698 Msa1130170:three_prime_UTR
GAGACACCTCCCAAATCATC+TGG 0.441148 7_3:+82286477 Msa1130170:CDS
AATTGACCTGTGACACCAGC+AGG 0.458083 7_3:-82287428 None:intergenic
GAAGGTTGTGGGGCACTTGT+GGG 0.461347 7_3:-82287530 None:intergenic
CTGAGCCTGGAGCTGAAAGC+AGG 0.472797 7_3:+82286583 Msa1130170:CDS
AGAAGGTTGTGGGGCACTTG+TGG 0.474517 7_3:-82287531 None:intergenic
TCGTAGGAGTTAAGGTTAAG+TGG 0.481491 7_3:-82284051 None:intergenic
GAAGTGACGGCAACACTTCA+GGG 0.493985 7_3:+82286780 Msa1130170:CDS
GCAATGCAGCAGAAGGTTGT+GGG 0.494500 7_3:-82287541 None:intergenic
TGTTCATGTCTATCCTGATT+GGG 0.502463 7_3:+82285449 Msa1130170:CDS
GAAATCTGAAAGACTGAGGA+TGG 0.502476 7_3:+82288056 Msa1130170:CDS
ATGGTGTGTGTATTAATGAT+TGG 0.504419 7_3:+82288681 Msa1130170:three_prime_UTR
GTCTGATGAAGAAATTGAAA+GGG 0.504608 7_3:+82286514 Msa1130170:CDS
TTCTGCTGCATTGCCTCCCG+AGG 0.504802 7_3:+82287550 Msa1130170:CDS
TTTCCATTAGGTGCTTGCAA+TGG 0.506264 7_3:+82285254 Msa1130170:intron
CACTCCTCACCCATATATGT+GGG 0.507261 7_3:+82285843 Msa1130170:CDS
GGCCTTATATTTGACACAGG+AGG 0.507511 7_3:+82288802 Msa1130170:three_prime_UTR
CTCAGTTTCTGATAAGATGA+TGG 0.512164 7_3:+82287397 Msa1130170:CDS
TTCAGCGATGACCACCGCGC+TGG 0.513035 7_3:+82287469 Msa1130170:CDS
GCCACAGGTGAGTTGTAGTA+AGG 0.513412 7_3:-82285811 None:intergenic
CTGCTAGGAGGTCCAGACTA+AGG 0.514918 7_3:+82287779 Msa1130170:CDS
AGGCTTACAATAGGAACTGC+AGG 0.515593 7_3:-82286037 None:intergenic
GGTCCTCTGGCTGTCAATGT+TGG 0.516004 7_3:-82288234 None:intergenic
GCAGCCACAGCATCAGCTCT+AGG 0.517070 7_3:-82288386 None:intergenic
TAAGGTGGCATGGCAACTCT+TGG 0.518466 7_3:-82285793 None:intergenic
TGTGGATACATTGCTGCATA+AGG 0.519877 7_3:-82285995 None:intergenic
ACTGTTTAAGCAGATGGAGA+AGG 0.523724 7_3:+82287335 Msa1130170:intron
ACACTCCTCACCCATATATG+TGG 0.527863 7_3:+82285842 Msa1130170:CDS
GGTCTGATGAAGAAATTGAA+AGG 0.533436 7_3:+82286513 Msa1130170:CDS
TAGGACTTGCATCCAATAGT+TGG 0.533692 7_3:-82288367 None:intergenic
GGTGTCACAGGTCAATTAGT+TGG 0.533761 7_3:+82287434 Msa1130170:CDS
GACATGAACATTCGTCTGGT+TGG 0.536497 7_3:-82285436 None:intergenic
TAAGCTTTGAAACAGAGAAA+AGG 0.538309 7_3:-82283952 None:intergenic
ATGATGGCAGTTGCCCCTGC+TGG 0.540223 7_3:+82287413 Msa1130170:CDS
GATAGACATGAACATTCGTC+TGG 0.541034 7_3:-82285440 None:intergenic
GCTAACAGTTTCTGAGGGGA+TGG 0.542549 7_3:+82288468 Msa1130170:three_prime_UTR
CCGTACCTGTATCCAAGCCT+CGG 0.543429 7_3:-82287567 None:intergenic
GCTGCATAAGGATGTCCATA+AGG 0.543750 7_3:-82285983 None:intergenic
GCCTTATATTTGACACAGGA+GGG 0.545513 7_3:+82288803 Msa1130170:three_prime_UTR
ATGCCAAAACTACATGATCA+TGG 0.550316 7_3:-82288425 None:intergenic
CAGCAATGTATCCACATGGA+GGG 0.550797 7_3:+82286002 Msa1130170:CDS
TCATCTGGAAATACTGATCA+GGG 0.551108 7_3:+82286492 Msa1130170:CDS
TATGTTATTATTACCTGTGG+TGG 0.555801 7_3:-82285868 None:intergenic
ACTACTGCTAACAGTTTCTG+AGG 0.556403 7_3:+82288462 Msa1130170:three_prime_UTR
GAGGTCCAGACTAAGGAAGC+AGG 0.557260 7_3:+82287786 Msa1130170:CDS
AGAAGGAAAAGAAGCCGTGA+GGG 0.558999 7_3:+82286950 Msa1130170:CDS
CAGTGGTCGGTGTTCCCTCA+CGG 0.564990 7_3:-82286964 None:intergenic
ACCACTGTTACAGGTGAAGA+AGG 0.565721 7_3:-82285315 None:intergenic
CAGGCTCAGCACTCTCAGCA+TGG 0.566951 7_3:-82286569 None:intergenic
TCGGGAGGCAATGCAGCAGA+AGG 0.568716 7_3:-82287548 None:intergenic
GATGAAATTCCTTGACTATG+TGG 0.568887 7_3:-82286336 None:intergenic
GCCTTCTTCACCTGTAACAG+TGG 0.573364 7_3:+82285314 Msa1130170:CDS
AATACTGAGGGTTCGAGTGA+TGG 0.573693 7_3:+82286758 Msa1130170:CDS
CTGTTTAAGCAGATGGAGAA+GGG 0.581574 7_3:+82287336 Msa1130170:intron
AGCGTGAACTGAAGCGTGAG+AGG 0.582159 7_3:+82287734 Msa1130170:CDS
CGTACCTGTATCCAAGCCTC+GGG 0.583108 7_3:-82287566 None:intergenic
ATCAGGCTAATCAAACAAGA+AGG 0.583524 7_3:+82286933 Msa1130170:intron
CGTGAGGGAACACCGACCAC+TGG 0.590853 7_3:+82286965 Msa1130170:CDS
AATCAAATCGAGAATCTGCT+AGG 0.590860 7_3:+82287764 Msa1130170:CDS
TTTGGCCTTATATTTGACAC+AGG 0.591927 7_3:+82288799 Msa1130170:three_prime_UTR
CTACTGCTAACAGTTTCTGA+GGG 0.592032 7_3:+82288463 Msa1130170:three_prime_UTR
CACCATAATATATTACGCGA+CGG 0.593334 7_3:-82288664 None:intergenic
ATTCCTTGACTATGTGGATG+TGG 0.594309 7_3:-82286330 None:intergenic
AAATTTAAAATTGCTCAACT+GGG 0.603679 7_3:+82288188 Msa1130170:CDS
TGACCAACATTGACAGCCAG+AGG 0.603992 7_3:+82288231 Msa1130170:CDS
TAATAATTCGGGAACTGTGG+AGG 0.607798 7_3:+82288295 Msa1130170:CDS
GGTTCGAGTGATGGAAGTGA+CGG 0.608791 7_3:+82286767 Msa1130170:CDS
TAATAATAATTCGGGAACTG+TGG 0.615906 7_3:+82288292 Msa1130170:CDS
CTTGCAATGTCAATAGGCAA+TGG 0.616162 7_3:+82286546 Msa1130170:CDS
TGAGTTGTAGTAAGGTGGCA+TGG 0.618268 7_3:-82285803 None:intergenic
GTGAACTGAAGCGTGAGAGG+AGG 0.619223 7_3:+82287737 Msa1130170:CDS
GTCATCGCTGAAGAAACTGC+AGG 0.623544 7_3:-82287458 None:intergenic
ACCTGTATCCAAGCCTCGGG+AGG 0.627725 7_3:-82287563 None:intergenic
ACAGGTGAGTTGTAGTAAGG+TGG 0.636010 7_3:-82285808 None:intergenic
CAATGCAGCAGAAGGTTGTG+GGG 0.639810 7_3:-82287540 None:intergenic
GTATTTCCAGATGATTTGGG+AGG 0.642501 7_3:-82286483 None:intergenic
AGCAATGTATCCACATGGAG+GGG 0.644007 7_3:+82286003 Msa1130170:CDS
AACAGAGTCATACCAGTGGT+CGG 0.649459 7_3:-82286977 None:intergenic
CAAATCGAGAATCTGCTAGG+AGG 0.653155 7_3:+82287767 Msa1130170:CDS
CTGAGAAATCTGAAAGACTG+AGG 0.654049 7_3:+82288052 Msa1130170:CDS
GGCTTACAATAGGAACTGCA+GGG 0.654085 7_3:-82286036 None:intergenic
GGTCCACATCCACATAGTCA+AGG 0.654527 7_3:+82286327 Msa1130170:CDS
ACTCCTCACCCATATATGTG+GGG 0.654672 7_3:+82285844 Msa1130170:CDS
GGAGTGTGACCAGAAGCCAC+AGG 0.657093 7_3:-82285826 None:intergenic
ATTGACCTGTGACACCAGCA+GGG 0.658341 7_3:-82287427 None:intergenic
GCATAAGGATGTCCATAAGG+TGG 0.658959 7_3:-82285980 None:intergenic
CTCCTCACCCATATATGTGG+GGG 0.659411 7_3:+82285845 Msa1130170:CDS
AAGTCCTAGAGCTGATGCTG+TGG 0.662680 7_3:+82288382 Msa1130170:CDS
ATTTCTCAGCTCCAGCGCGG+TGG 0.663610 7_3:-82287480 None:intergenic
GCAGCAATGTATCCACATGG+AGG 0.664985 7_3:+82286001 Msa1130170:CDS
ATGAACAGTGTGAATACTGA+GGG 0.671969 7_3:+82286746 Msa1130170:intron
AAGAAGGAAAAGAAGCCGTG+AGG 0.679307 7_3:+82286949 Msa1130170:CDS
GAAGGGAAAACTCATACACA+AGG 0.687878 7_3:+82287353 Msa1130170:CDS
TATGCAGCAATGTATCCACA+TGG 0.688073 7_3:+82285998 Msa1130170:CDS
TGAGTATAAACCCCTCCATG+TGG 0.689024 7_3:-82286013 None:intergenic
TTGACCTGTGACACCAGCAG+GGG 0.690300 7_3:-82287426 None:intergenic
ACCTTACTACAACTCACCTG+TGG 0.691801 7_3:+82285810 Msa1130170:CDS
AAGTGACGGCAACACTTCAG+GGG 0.693337 7_3:+82286781 Msa1130170:CDS
TACTGCTAACAGTTTCTGAG+GGG 0.711047 7_3:+82288464 Msa1130170:three_prime_UTR
CTGAAAGCAGGCAATCACAG+AGG 0.731086 7_3:+82286595 Msa1130170:CDS
AGAATTTCTCAGCTCCAGCG+CGG 0.750273 7_3:-82287483 None:intergenic
TATGAACAGTGTGAATACTG+AGG 0.751869 7_3:+82286745 Msa1130170:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTTTACAAACATAAA+TGG + chr7_3:82285709-82285728 Msa1130170:intron 10.0%
!! ATTAAAAACTAAAAAATCAA+AGG - chr7_3:82286072-82286091 None:intergenic 10.0%
!! TAGAAAACTTATATATAAGT+TGG - chr7_3:82285142-82285161 None:intergenic 15.0%
!!! CGATATTTTTTTTAAAGAAT+TGG + chr7_3:82285199-82285218 Msa1130170:intron 15.0%
!! TTCAATTTGATATTAATTAG+AGG - chr7_3:82285540-82285559 None:intergenic 15.0%
!!! ATTTTAAACAAATAGACTAT+AGG - chr7_3:82286865-82286884 None:intergenic 15.0%
!!! TTATTTTAGTACCATATTTT+GGG - chr7_3:82287289-82287308 None:intergenic 15.0%
!!! ATTATTTTAGTACCATATTT+TGG - chr7_3:82287290-82287309 None:intergenic 15.0%
!!! GATTTTAAAATAATTCCTTT+TGG + chr7_3:82287690-82287709 Msa1130170:intron 15.0%
!! ATCAAGAGTTAATAATAATT+CGG + chr7_3:82288283-82288302 Msa1130170:CDS 15.0%
!! AAAAAAAAGTTGAATTTCGT+AGG - chr7_3:82284070-82284089 None:intergenic 20.0%
!!! TGTTTGTTTTTAATTCTGTT+TGG + chr7_3:82284094-82284113 Msa1130170:five_prime_UTR 20.0%
!!! TTTTAGTTAAACAAGCAAAA+AGG + chr7_3:82284270-82284289 Msa1130170:intron 20.0%
!!! TCTTAATTTGCATCTAATTA+AGG + chr7_3:82284314-82284333 Msa1130170:intron 20.0%
!! CTAAAGATAATTCAATTCAA+GGG - chr7_3:82284650-82284669 None:intergenic 20.0%
!! CCATCAAAGTTTAATATTAT+TGG - chr7_3:82284677-82284696 None:intergenic 20.0%
!! CCAATAATATTAAACTTTGA+TGG + chr7_3:82284674-82284693 Msa1130170:intron 20.0%
!! TAATATTAAACTTTGATGGA+AGG + chr7_3:82284678-82284697 Msa1130170:intron 20.0%
!!! TTATATATAAGTTGGATATC+CGG - chr7_3:82285134-82285153 None:intergenic 20.0%
!!! TTTTTTTTAAAGAATTGGCA+TGG + chr7_3:82285204-82285223 Msa1130170:intron 20.0%
!!! TTATGTACTCATCTTTTAAT+AGG + chr7_3:82285407-82285426 Msa1130170:intron 20.0%
!!! AATTTTTATCCACTTGAAAA+TGG + chr7_3:82285678-82285697 Msa1130170:intron 20.0%
!!! ATTACGAATGCTTTATTTTT+CGG + chr7_3:82286261-82286280 Msa1130170:intron 20.0%
!!! AATTCCGTTTTGTAAAATAT+AGG + chr7_3:82286305-82286324 Msa1130170:intron 20.0%
!!! ATTCCGTTTTGTAAAATATA+GGG + chr7_3:82286306-82286325 Msa1130170:intron 20.0%
!!! ATTTATTTTAGAATGAACAC+TGG - chr7_3:82287510-82287529 None:intergenic 20.0%
!!! AAAATTTAAAATTGCTCAAC+TGG + chr7_3:82288187-82288206 Msa1130170:CDS 20.0%
!!! AAATTTAAAATTGCTCAACT+GGG + chr7_3:82288188-82288207 Msa1130170:CDS 20.0%
!! TCAAGAGTTAATAATAATTC+GGG + chr7_3:82288284-82288303 Msa1130170:CDS 20.0%
!! CTATTTAGATTTGACAAATA+TGG + chr7_3:82288577-82288596 Msa1130170:three_prime_UTR 20.0%
!!! TTAGATATTTTAGTTTAGAG+AGG + chr7_3:82288631-82288650 Msa1130170:three_prime_UTR 20.0%
!!! TAGATATTTTAGTTTAGAGA+GGG + chr7_3:82288632-82288651 Msa1130170:three_prime_UTR 20.0%
!! TTTTTAATGTTTTGTGTCTG+AGG + chr7_3:82284164-82284183 Msa1130170:intron 25.0%
! AAGCAAAAAGGTTTGAATTT+AGG + chr7_3:82284282-82284301 Msa1130170:intron 25.0%
! TTCAAGAAATTAGTTGAAAC+TGG + chr7_3:82284354-82284373 Msa1130170:intron 25.0%
!!! ACATTTTTTCACTTTCACAT+GGG - chr7_3:82284442-82284461 None:intergenic 25.0%
!!! AACATTTTTTCACTTTCACA+TGG - chr7_3:82284443-82284462 None:intergenic 25.0%
! TGTGAAAGTGAAAAAATGTT+TGG + chr7_3:82284443-82284462 Msa1130170:intron 25.0%
! ATAATTCAATTCAAGGGAAA+TGG - chr7_3:82284644-82284663 None:intergenic 25.0%
! GCTAAAGATAATTCAATTCA+AGG - chr7_3:82284651-82284670 None:intergenic 25.0%
!! TCTGAAATTTAGTTTACTTG+AGG + chr7_3:82284793-82284812 Msa1130170:intron 25.0%
!! CTGAAATTTAGTTTACTTGA+GGG + chr7_3:82284794-82284813 Msa1130170:intron 25.0%
!! TGAAATTTAGTTTACTTGAG+GGG + chr7_3:82284795-82284814 Msa1130170:intron 25.0%
!!! CTTTGCAAACTTTTTTTTTG+TGG + chr7_3:82285050-82285069 Msa1130170:intron 25.0%
! AATTTCAATACATAGTGAAC+CGG + chr7_3:82285112-82285131 Msa1130170:intron 25.0%
! TAAACAACTCAAAAGGAAAA+AGG - chr7_3:82285494-82285513 None:intergenic 25.0%
!! CATCATTATCAGTTTTCTAA+TGG - chr7_3:82285735-82285754 None:intergenic 25.0%
! AAAATCAAAGGTAAGAATGT+AGG - chr7_3:82286060-82286079 None:intergenic 25.0%
! TGAAACTTATGTTAATTGTC+TGG + chr7_3:82286107-82286126 Msa1130170:intron 25.0%
! AAATTGATCAATACTGACAA+AGG + chr7_3:82286156-82286175 Msa1130170:intron 25.0%
! ATTGCAAGTATAATGCATTA+AGG - chr7_3:82286225-82286244 None:intergenic 25.0%
! AGAAAATTATAACTTACAGC+AGG - chr7_3:82286366-82286385 None:intergenic 25.0%
! TATCCACAATAACAAACAAA+TGG - chr7_3:82286705-82286724 None:intergenic 25.0%
! CATATCATCATAAAGTTACT+TGG - chr7_3:82286729-82286748 None:intergenic 25.0%
! ATAAGACTCCAATATCAATA+CGG - chr7_3:82287238-82287257 None:intergenic 25.0%
! AATATCATGTACCCAAAATA+TGG + chr7_3:82287275-82287294 Msa1130170:intron 25.0%
!! ACTAAAATAATCAGTGTTGA+TGG + chr7_3:82287299-82287318 Msa1130170:intron 25.0%
! AGAACAGTTTAAATACTCTA+TGG + chr7_3:82287606-82287625 Msa1130170:intron 25.0%
!! ATAATTCCTTTTGGTATGTT+TGG + chr7_3:82287699-82287718 Msa1130170:intron 25.0%
!!! ATATAAATGTTGGTTTCTTC+TGG + chr7_3:82287813-82287832 Msa1130170:intron 25.0%
! ATAAAGATTATACTCAGCAT+AGG + chr7_3:82287914-82287933 Msa1130170:intron 25.0%
!!! ACTTCATTTTTTTTCGATTC+AGG + chr7_3:82288163-82288182 Msa1130170:intron 25.0%
!! TTGGTCAAAATTATCTCTTT+TGG - chr7_3:82288218-82288237 None:intergenic 25.0%
!! AATAAGTTTTCTGTACTTAC+AGG - chr7_3:82288263-82288282 None:intergenic 25.0%
! CTTTATCAGATACCATTATA+AGG - chr7_3:82288713-82288732 None:intergenic 25.0%
! TTGTCTTTCTTGTATACATT+TGG + chr7_3:82288775-82288794 Msa1130170:three_prime_UTR 25.0%
! CTCTCTCTAGAAAAAAATGA+GGG - chr7_3:82284015-82284034 None:intergenic 30.0%
! TCTCTCTCTAGAAAAAAATG+AGG - chr7_3:82284016-82284035 None:intergenic 30.0%
! AGGTTTGAATTTAGGTGTTT+TGG + chr7_3:82284290-82284309 Msa1130170:intron 30.0%
AAATTAGTTGAAACTGGATC+AGG + chr7_3:82284360-82284379 Msa1130170:intron 30.0%
!!! CATTTTTTCACTTTCACATG+GGG - chr7_3:82284441-82284460 None:intergenic 30.0%
AAAAAATGTTTGGTATGCGA+GGG + chr7_3:82284453-82284472 Msa1130170:intron 30.0%
GTAGTATTCAACAAGTTTCT+AGG - chr7_3:82284835-82284854 None:intergenic 30.0%
! ACTCATGCAATTTTTCATCA+AGG + chr7_3:82284959-82284978 Msa1130170:intron 30.0%
!!! TTGACCAAGTTTTTTCCATT+AGG + chr7_3:82285242-82285261 Msa1130170:intron 30.0%
AAGCAAAATATTACCCAACT+AGG - chr7_3:82285601-82285620 None:intergenic 30.0%
GTTAAATGAGAAAACAACCA+GGG - chr7_3:82285626-82285645 None:intergenic 30.0%
TGTTAAATGAGAAAACAACC+AGG - chr7_3:82285627-82285646 None:intergenic 30.0%
!! TAAAGTGAACCATTTTCAAG+TGG - chr7_3:82285690-82285709 None:intergenic 30.0%
AAATTGTCTGCTATATCTTC+AGG + chr7_3:82285759-82285778 Msa1130170:intron 30.0%
CTATATCTTCAGGCATATTA+TGG + chr7_3:82285769-82285788 Msa1130170:intron 30.0%
TATGTTATTATTACCTGTGG+TGG - chr7_3:82285871-82285890 None:intergenic 30.0%
ACCACAGGTAATAATAACAT+AGG + chr7_3:82285870-82285889 Msa1130170:intron 30.0%
TTGCTTATTCATGTCATCTA+GGG - chr7_3:82285932-82285951 None:intergenic 30.0%
TAAGAATGTAGGCTTACAAT+AGG - chr7_3:82286049-82286068 None:intergenic 30.0%
GTAAAATATGAACCAAACCA+TGG - chr7_3:82286134-82286153 None:intergenic 30.0%
! GGACCCTATATTTTACAAAA+CGG - chr7_3:82286312-82286331 None:intergenic 30.0%
AAGTTATGATCAGTTGGAAT+TGG + chr7_3:82286421-82286440 Msa1130170:intron 30.0%
TCAGTATTTCCAGATGATTT+GGG - chr7_3:82286489-82286508 None:intergenic 30.0%
ATCAGTATTTCCAGATGATT+TGG - chr7_3:82286490-82286509 None:intergenic 30.0%
GTCTGATGAAGAAATTGAAA+GGG + chr7_3:82286514-82286533 Msa1130170:CDS 30.0%
AAGAAATTGAAAGGGTTTGA+TGG + chr7_3:82286522-82286541 Msa1130170:CDS 30.0%
CAACTGAGAGAAAGATAAAT+AGG - chr7_3:82286671-82286690 None:intergenic 30.0%
! TTTCTCTCAGTTGATATGAT+TGG + chr7_3:82286678-82286697 Msa1130170:intron 30.0%
ATGAACAATAGAGTTGTCAT+GGG + chr7_3:82287022-82287041 Msa1130170:intron 30.0%
ATATCAATACGGTATGAAGT+CGG - chr7_3:82287227-82287246 None:intergenic 30.0%
! ACTTCATACCGTATTGATAT+TGG + chr7_3:82287227-82287246 Msa1130170:intron 30.0%
ATCAGAAACTGAGATTTCTT+TGG - chr7_3:82287390-82287409 None:intergenic 30.0%
ACAAATCCAAACATACCAAA+AGG - chr7_3:82287708-82287727 None:intergenic 30.0%
AGCAGGTATGATATAAATGT+TGG + chr7_3:82287803-82287822 Msa1130170:intron 30.0%
CTCAGAATCGTATATTAATC+AGG + chr7_3:82287869-82287888 Msa1130170:intron 30.0%
GATGGAAAATGTTGCATTAA+AGG + chr7_3:82288074-82288093 Msa1130170:CDS 30.0%
TAATAATAATTCGGGAACTG+TGG + chr7_3:82288292-82288311 Msa1130170:CDS 30.0%
! AAACCATGATCATGTAGTTT+TGG + chr7_3:82288422-82288441 Msa1130170:three_prime_UTR 30.0%
! AAACTGTTAGCAGTAGTTTT+GGG - chr7_3:82288459-82288478 None:intergenic 30.0%
!!! TGAATTAGTTCTGGTTTTGA+TGG - chr7_3:82288519-82288538 None:intergenic 30.0%
GATAAGCAATGAATTAGTTC+TGG - chr7_3:82288528-82288547 None:intergenic 30.0%
TTGCTTATCATCAGTTACTT+AGG + chr7_3:82288539-82288558 Msa1130170:three_prime_UTR 30.0%
ATGGTGTGTGTATTAATGAT+TGG + chr7_3:82288681-82288700 Msa1130170:three_prime_UTR 30.0%
! GGTATCTGATAAAGTTTTTC+TGG + chr7_3:82288719-82288738 Msa1130170:three_prime_UTR 30.0%
! TTCTTGTATACATTTGGCTT+TGG + chr7_3:82288781-82288800 Msa1130170:three_prime_UTR 30.0%
GTTGAATTTCGTAGGAGTTA+AGG - chr7_3:82284062-82284081 None:intergenic 35.0%
GAAAAAATGTTTGGTATGCG+AGG + chr7_3:82284452-82284471 Msa1130170:intron 35.0%
AATCTCCGCAATTCTTTGTT+CGG + chr7_3:82284491-82284510 Msa1130170:intron 35.0%
TCAATGTCTCTCTTTCTATC+CGG + chr7_3:82284542-82284561 Msa1130170:intron 35.0%
ATCACACTTTCTGTGAATCA+AGG + chr7_3:82284711-82284730 Msa1130170:intron 35.0%
ACTTGGTCAAAATCTGTAGA+AGG - chr7_3:82285232-82285251 None:intergenic 35.0%
AGCACCTAATGGAAAAAACT+TGG - chr7_3:82285249-82285268 None:intergenic 35.0%
ATGTTCATGTCTATCCTGAT+TGG + chr7_3:82285448-82285467 Msa1130170:CDS 35.0%
TGTTCATGTCTATCCTGATT+GGG + chr7_3:82285449-82285468 Msa1130170:CDS 35.0%
AAAAAGGTAAGTAACCTGCA+TGG - chr7_3:82285478-82285497 None:intergenic 35.0%
CCAGAGATAAACAACTCAAA+AGG - chr7_3:82285501-82285520 None:intergenic 35.0%
!!! CCTTTTGAGTTGTTTATCTC+TGG + chr7_3:82285498-82285517 Msa1130170:intron 35.0%
!!! TTGCTACCAAGTACTGATTT+TGG + chr7_3:82285573-82285592 Msa1130170:intron 35.0%
!! GGTAATATTTTGCTTTTCCC+TGG + chr7_3:82285606-82285625 Msa1130170:intron 35.0%
GCCTATGTTATTATTACCTG+TGG - chr7_3:82285874-82285893 None:intergenic 35.0%
GTTGCTTATTCATGTCATCT+AGG - chr7_3:82285933-82285952 None:intergenic 35.0%
TATGTTAATTGTCTGGACCA+TGG + chr7_3:82286114-82286133 Msa1130170:intron 35.0%
AAGGTAATCATAGTGTGGAA+AGG - chr7_3:82286206-82286225 None:intergenic 35.0%
GCATTAAGGTAATCATAGTG+TGG - chr7_3:82286211-82286230 None:intergenic 35.0%
AACGGAATTCATAAGATCGT+GGG - chr7_3:82286294-82286313 None:intergenic 35.0%
AAACGGAATTCATAAGATCG+TGG - chr7_3:82286295-82286314 None:intergenic 35.0%
GATGAAATTCCTTGACTATG+TGG - chr7_3:82286339-82286358 None:intergenic 35.0%
GCTATCAAGTTATGATCAGT+TGG + chr7_3:82286415-82286434 Msa1130170:intron 35.0%
ATCATCTGGAAATACTGATC+AGG + chr7_3:82286491-82286510 Msa1130170:CDS 35.0%
TCATCTGGAAATACTGATCA+GGG + chr7_3:82286492-82286511 Msa1130170:CDS 35.0%
GGTCTGATGAAGAAATTGAA+AGG + chr7_3:82286513-82286532 Msa1130170:CDS 35.0%
ATAGGATGTATGTATGCTCT+TGG - chr7_3:82286653-82286672 None:intergenic 35.0%
!! GGTCCATTTGTTTGTTATTG+TGG + chr7_3:82286699-82286718 Msa1130170:intron 35.0%
TATGAACAGTGTGAATACTG+AGG + chr7_3:82286745-82286764 Msa1130170:intron 35.0%
ATGAACAGTGTGAATACTGA+GGG + chr7_3:82286746-82286765 Msa1130170:intron 35.0%
ATAGGTGAAACAGTTGCATA+TGG - chr7_3:82286847-82286866 None:intergenic 35.0%
!! TGATTAGCCTGATCATAAGA+CGG - chr7_3:82286926-82286945 None:intergenic 35.0%
ATCAGGCTAATCAAACAAGA+AGG + chr7_3:82286933-82286952 Msa1130170:intron 35.0%
GATGAACAATAGAGTTGTCA+TGG + chr7_3:82287021-82287040 Msa1130170:intron 35.0%
TGTCAACCAGTTTATTGAGT+AGG + chr7_3:82287075-82287094 Msa1130170:intron 35.0%
GTCAACCAGTTTATTGAGTA+GGG + chr7_3:82287076-82287095 Msa1130170:intron 35.0%
TATATCATTGTTGCTCAGTG+AGG + chr7_3:82287120-82287139 Msa1130170:intron 35.0%
ATATCATTGTTGCTCAGTGA+GGG + chr7_3:82287121-82287140 Msa1130170:intron 35.0%
TTCTCTACTGTTTAAGCAGA+TGG + chr7_3:82287329-82287348 Msa1130170:intron 35.0%
CTCAGTTTCTGATAAGATGA+TGG + chr7_3:82287397-82287416 Msa1130170:CDS 35.0%
AATCAAATCGAGAATCTGCT+AGG + chr7_3:82287764-82287783 Msa1130170:CDS 35.0%
CTTTATCAAGTGTGTGACAT+GGG - chr7_3:82287900-82287919 None:intergenic 35.0%
TCTTTATCAAGTGTGTGACA+TGG - chr7_3:82287901-82287920 None:intergenic 35.0%
TGTGACAACAAACCAAATTC+TGG + chr7_3:82288332-82288351 Msa1130170:CDS 35.0%
ATGCCAAAACTACATGATCA+TGG - chr7_3:82288428-82288447 None:intergenic 35.0%
! GAAACTGTTAGCAGTAGTTT+TGG - chr7_3:82288460-82288479 None:intergenic 35.0%
AACCGTCGCGTAATATATTA+TGG + chr7_3:82288662-82288681 Msa1130170:three_prime_UTR 35.0%
CACCATAATATATTACGCGA+CGG - chr7_3:82288667-82288686 None:intergenic 35.0%
!!! TTTCTGGCTTTTTCATTCTG+TGG + chr7_3:82288735-82288754 Msa1130170:three_prime_UTR 35.0%
!! TTTGGCCTTATATTTGACAC+AGG + chr7_3:82288799-82288818 Msa1130170:three_prime_UTR 35.0%
TCGTAGGAGTTAAGGTTAAG+TGG - chr7_3:82284054-82284073 None:intergenic 40.0%
ATCTCCGCAATTCTTTGTTC+GGG + chr7_3:82284492-82284511 Msa1130170:intron 40.0%
TGTTCGGGGTAGATTTGATT+TGG + chr7_3:82284507-82284526 Msa1130170:intron 40.0%
AAAGAGAGACATTGACAACG+AGG - chr7_3:82284537-82284556 None:intergenic 40.0%
! CTTTTCACAATACCACAAGC+CGG - chr7_3:82284564-82284583 None:intergenic 40.0%
!! AGTGTTAGCCTTCTCATTAG+TGG + chr7_3:82284753-82284772 Msa1130170:intron 40.0%
CAGAGAAACCACTAATGAGA+AGG - chr7_3:82284764-82284783 None:intergenic 40.0%
TGCTTACATATAGAGACGGA+GGG - chr7_3:82284859-82284878 None:intergenic 40.0%
!! TCTATATGTAAGCACCGGAA+AGG + chr7_3:82284865-82284884 Msa1130170:intron 40.0%
!! CTATATGTAAGCACCGGAAA+GGG + chr7_3:82284866-82284885 Msa1130170:intron 40.0%
CTATATGTAAGCACCCTTTC+CGG - chr7_3:82284882-82284901 None:intergenic 40.0%
!! GGAAAGGGTGCTTACATATA+GGG + chr7_3:82284881-82284900 Msa1130170:intron 40.0%
! TGCTAGCTTAAGAAGTCAAC+CGG + chr7_3:82285020-82285039 Msa1130170:intron 40.0%
AAGTTTGCAAAGTAACCTCC+CGG - chr7_3:82285042-82285061 None:intergenic 40.0%
CATGTTGCATTCATAGTCGT+TGG + chr7_3:82285163-82285182 Msa1130170:intron 40.0%
TTTCCATTAGGTGCTTGCAA+TGG + chr7_3:82285254-82285273 Msa1130170:intron 40.0%
TTCCATTAGGTGCTTGCAAT+GGG + chr7_3:82285255-82285274 Msa1130170:intron 40.0%
CAGTCTTGGTAGATTTCTCT+TGG - chr7_3:82285290-82285309 None:intergenic 40.0%
! TGAAGAAGGCTTTTCAGTCT+TGG - chr7_3:82285304-82285323 None:intergenic 40.0%
TAAATGCAACCACACGACAT+AGG - chr7_3:82285362-82285381 None:intergenic 40.0%
GATAGACATGAACATTCGTC+TGG - chr7_3:82285443-82285462 None:intergenic 40.0%
! CAGTACTTGGTAGCAATACA+AGG - chr7_3:82285569-82285588 None:intergenic 40.0%
TAGGTGCCAAAATCAGTACT+TGG - chr7_3:82285582-82285601 None:intergenic 40.0%
!!! TACTGATTTTGGCACCTAGT+TGG + chr7_3:82285584-82285603 Msa1130170:intron 40.0%
!! ACTGATTTTGGCACCTAGTT+GGG + chr7_3:82285585-82285604 Msa1130170:intron 40.0%
TGTGGATACATTGCTGCATA+AGG - chr7_3:82285998-82286017 None:intergenic 40.0%
TATGCAGCAATGTATCCACA+TGG + chr7_3:82285998-82286017 Msa1130170:CDS 40.0%
TAATTGTCTGGACCATGGTT+TGG + chr7_3:82286119-82286138 Msa1130170:intron 40.0%
! GGAAAGGTTATTGATAGCAG+AGG - chr7_3:82286190-82286209 None:intergenic 40.0%
ACGGAATTCATAAGATCGTG+GGG - chr7_3:82286293-82286312 None:intergenic 40.0%
ATTCCTTGACTATGTGGATG+TGG - chr7_3:82286333-82286352 None:intergenic 40.0%
AATTGGTACAACTTGCAGAC+TGG + chr7_3:82286438-82286457 Msa1130170:intron 40.0%
! GTATTTCCAGATGATTTGGG+AGG - chr7_3:82286486-82286505 None:intergenic 40.0%
! GATGGACTTGCAATGTCAAT+AGG + chr7_3:82286540-82286559 Msa1130170:CDS 40.0%
CTTGCAATGTCAATAGGCAA+TGG + chr7_3:82286546-82286565 Msa1130170:CDS 40.0%
TATTTGCCCGTCTTATGATC+AGG + chr7_3:82286916-82286935 Msa1130170:intron 40.0%
!! GATTAGCCTGATCATAAGAC+GGG - chr7_3:82286925-82286944 None:intergenic 40.0%
GTTCATCAAGATGTGACACT+TGG - chr7_3:82287008-82287027 None:intergenic 40.0%
TATCATTGTTGCTCAGTGAG+GGG + chr7_3:82287122-82287141 Msa1130170:intron 40.0%
! ACGTTGTAGACTCTAAAGAG+TGG + chr7_3:82287185-82287204 Msa1130170:intron 40.0%
CGGTATGAAGTCGGAAATAT+GGG - chr7_3:82287218-82287237 None:intergenic 40.0%
ACGGTATGAAGTCGGAAATA+TGG - chr7_3:82287219-82287238 None:intergenic 40.0%
ACTGTTTAAGCAGATGGAGA+AGG + chr7_3:82287335-82287354 Msa1130170:intron 40.0%
CTGTTTAAGCAGATGGAGAA+GGG + chr7_3:82287336-82287355 Msa1130170:intron 40.0%
GAAGGGAAAACTCATACACA+AGG + chr7_3:82287353-82287372 Msa1130170:CDS 40.0%
! AACTTTTCGTGCCAGTTCTT+CGG - chr7_3:82287980-82287999 None:intergenic 40.0%
CTGAGAAATCTGAAAGACTG+AGG + chr7_3:82288052-82288071 Msa1130170:CDS 40.0%
GAAATCTGAAAGACTGAGGA+TGG + chr7_3:82288056-82288075 Msa1130170:CDS 40.0%
! CATGTCACTGTGTTATTCTG+TGG + chr7_3:82288130-82288149 Msa1130170:intron 40.0%
! GTTTTCTGTACTTACAGGTG+CGG - chr7_3:82288258-82288277 None:intergenic 40.0%
TAATAATTCGGGAACTGTGG+AGG + chr7_3:82288295-82288314 Msa1130170:CDS 40.0%
TAGGACTTGCATCCAATAGT+TGG - chr7_3:82288370-82288389 None:intergenic 40.0%
ACTACTGCTAACAGTTTCTG+AGG + chr7_3:82288462-82288481 Msa1130170:three_prime_UTR 40.0%
CTACTGCTAACAGTTTCTGA+GGG + chr7_3:82288463-82288482 Msa1130170:three_prime_UTR 40.0%
TACTGCTAACAGTTTCTGAG+GGG + chr7_3:82288464-82288483 Msa1130170:three_prime_UTR 40.0%
GATTGGTGTGCACCTTATAA+TGG + chr7_3:82288698-82288717 Msa1130170:three_prime_UTR 40.0%
GCCTTATATTTGACACAGGA+GGG + chr7_3:82288803-82288822 Msa1130170:three_prime_UTR 40.0%
TCCCTCCTGTGTCAAATATA+AGG - chr7_3:82288807-82288826 None:intergenic 40.0%
TTTCACATGGGGTCAAGGAA+TGG - chr7_3:82284430-82284449 None:intergenic 45.0%
TTCACTTTCACATGGGGTCA+AGG - chr7_3:82284435-82284454 None:intergenic 45.0%
TCTCCGCAATTCTTTGTTCG+GGG + chr7_3:82284493-82284512 Msa1130170:intron 45.0%
CTACCCCGAACAAAGAATTG+CGG - chr7_3:82284499-82284518 None:intergenic 45.0%
GTCAAAGACACACTAGTGGA+GGG - chr7_3:82284597-82284616 None:intergenic 45.0%
AGTCAAAGACACACTAGTGG+AGG - chr7_3:82284598-82284617 None:intergenic 45.0%
GTGAGTCAAAGACACACTAG+TGG - chr7_3:82284601-82284620 None:intergenic 45.0%
GTGCTTACATATAGAGACGG+AGG - chr7_3:82284860-82284879 None:intergenic 45.0%
CCGGTGCTTACATATAGAGA+CGG - chr7_3:82284863-82284882 None:intergenic 45.0%
CCGTCTCTATATGTAAGCAC+CGG + chr7_3:82284860-82284879 Msa1130170:intron 45.0%
!! CGGAAAGGGTGCTTACATAT+AGG + chr7_3:82284880-82284899 Msa1130170:intron 45.0%
! AGGGTGCTTACATATAGGGA+CGG + chr7_3:82284885-82284904 Msa1130170:intron 45.0%
TGCTTACATATAGGGACGGA+GGG + chr7_3:82284889-82284908 Msa1130170:intron 45.0%
! GCTAGCTTAAGAAGTCAACC+GGG + chr7_3:82285021-82285040 Msa1130170:intron 45.0%
TTCCCATTGCAAGCACCTAA+TGG - chr7_3:82285260-82285279 None:intergenic 45.0%
ACCACTGTTACAGGTGAAGA+AGG - chr7_3:82285318-82285337 None:intergenic 45.0%
TCTACTGTTCCTATGTCGTG+TGG + chr7_3:82285350-82285369 Msa1130170:intron 45.0%
GACATGAACATTCGTCTGGT+TGG - chr7_3:82285439-82285458 None:intergenic 45.0%
TGAGTTGTAGTAAGGTGGCA+TGG - chr7_3:82285806-82285825 None:intergenic 45.0%
ACAGGTGAGTTGTAGTAAGG+TGG - chr7_3:82285811-82285830 None:intergenic 45.0%
ACCTTACTACAACTCACCTG+TGG + chr7_3:82285810-82285829 Msa1130170:CDS 45.0%
ACACTCCTCACCCATATATG+TGG + chr7_3:82285842-82285861 Msa1130170:CDS 45.0%
CACTCCTCACCCATATATGT+GGG + chr7_3:82285843-82285862 Msa1130170:CDS 45.0%
ACTCCTCACCCATATATGTG+GGG + chr7_3:82285844-82285863 Msa1130170:CDS 45.0%
CAGCATATGATGCCACCTTA+TGG + chr7_3:82285968-82285987 Msa1130170:intron 45.0%
GCATAAGGATGTCCATAAGG+TGG - chr7_3:82285983-82286002 None:intergenic 45.0%
GCTGCATAAGGATGTCCATA+AGG - chr7_3:82285986-82286005 None:intergenic 45.0%
CAGCAATGTATCCACATGGA+GGG + chr7_3:82286002-82286021 Msa1130170:CDS 45.0%
AGCAATGTATCCACATGGAG+GGG + chr7_3:82286003-82286022 Msa1130170:CDS 45.0%
TGAGTATAAACCCCTCCATG+TGG - chr7_3:82286016-82286035 None:intergenic 45.0%
GGCTTACAATAGGAACTGCA+GGG - chr7_3:82286039-82286058 None:intergenic 45.0%
AGGCTTACAATAGGAACTGC+AGG - chr7_3:82286040-82286059 None:intergenic 45.0%
!! GGAGGTGTCTCTATGCTTAA+AGG - chr7_3:82286468-82286487 None:intergenic 45.0%
AATACTGAGGGTTCGAGTGA+TGG + chr7_3:82286758-82286777 Msa1130170:CDS 45.0%
AAGAAGGAAAAGAAGCCGTG+AGG + chr7_3:82286949-82286968 Msa1130170:CDS 45.0%
AGAAGGAAAAGAAGCCGTGA+GGG + chr7_3:82286950-82286969 Msa1130170:CDS 45.0%
AACAGAGTCATACCAGTGGT+CGG - chr7_3:82286980-82286999 None:intergenic 45.0%
GAAGAACAGAGTCATACCAG+TGG - chr7_3:82286984-82287003 None:intergenic 45.0%
CCAGACCCTACTCAATAAAC+TGG - chr7_3:82287084-82287103 None:intergenic 45.0%
CCAGTTTATTGAGTAGGGTC+TGG + chr7_3:82287081-82287100 Msa1130170:intron 45.0%
! GGTGTCACAGGTCAATTAGT+TGG + chr7_3:82287434-82287453 Msa1130170:CDS 45.0%
CAAATCGAGAATCTGCTAGG+AGG + chr7_3:82287767-82287786 Msa1130170:CDS 45.0%
TCATACCTGCTTCCTTAGTC+TGG - chr7_3:82287794-82287813 None:intergenic 45.0%
TGATGCACTCTCAGCATTCA+AGG - chr7_3:82288007-82288026 None:intergenic 45.0%
GGAACTGTGGAGGATGAAAA+TGG + chr7_3:82288305-82288324 Msa1130170:CDS 45.0%
TGCAACTTCGCACCAGAATT+TGG - chr7_3:82288347-82288366 None:intergenic 45.0%
TGCGAAGTTGCACCAACTAT+TGG + chr7_3:82288355-82288374 Msa1130170:CDS 45.0%
! GGCCTTATATTTGACACAGG+AGG + chr7_3:82288802-82288821 Msa1130170:three_prime_UTR 45.0%
!!! ATTATTTTAAAATCATTAAA+AGG - chr7_3:82287684-82287703 None:intergenic 5.0%
! CTCTCTTTCTATCCGGCTTG+TGG + chr7_3:82284549-82284568 Msa1130170:intron 50.0%
GTGCTTACATATAGGGACGG+AGG + chr7_3:82284888-82284907 Msa1130170:intron 50.0%
AGCTTAAGAAGTCAACCGGG+AGG + chr7_3:82285024-82285043 Msa1130170:intron 50.0%
GCCTTCTTCACCTGTAACAG+TGG + chr7_3:82285314-82285333 Msa1130170:CDS 50.0%
GTAGAGCTCACCACTGTTAC+AGG - chr7_3:82285327-82285346 None:intergenic 50.0%
TAAGGTGGCATGGCAACTCT+TGG - chr7_3:82285796-82285815 None:intergenic 50.0%
GCCACAGGTGAGTTGTAGTA+AGG - chr7_3:82285814-82285833 None:intergenic 50.0%
TACAACTCACCTGTGGCTTC+TGG + chr7_3:82285817-82285836 Msa1130170:CDS 50.0%
CTCCTCACCCATATATGTGG+GGG + chr7_3:82285845-82285864 Msa1130170:CDS 50.0%
GCAGCAATGTATCCACATGG+AGG + chr7_3:82286001-82286020 Msa1130170:CDS 50.0%
GGTCCACATCCACATAGTCA+AGG + chr7_3:82286327-82286346 Msa1130170:CDS 50.0%
GAGACACCTCCCAAATCATC+TGG + chr7_3:82286477-82286496 Msa1130170:CDS 50.0%
CTGAAAGCAGGCAATCACAG+AGG + chr7_3:82286595-82286614 Msa1130170:CDS 50.0%
! GGTTCGAGTGATGGAAGTGA+CGG + chr7_3:82286767-82286786 Msa1130170:CDS 50.0%
GAAGTGACGGCAACACTTCA+GGG + chr7_3:82286780-82286799 Msa1130170:CDS 50.0%
AAGTGACGGCAACACTTCAG+GGG + chr7_3:82286781-82286800 Msa1130170:CDS 50.0%
ACACTTCAGGGGTGAGTACT+TGG + chr7_3:82286792-82286811 Msa1130170:intron 50.0%
ATTGACCTGTGACACCAGCA+GGG - chr7_3:82287430-82287449 None:intergenic 50.0%
AATTGACCTGTGACACCAGC+AGG - chr7_3:82287431-82287450 None:intergenic 50.0%
GTCATCGCTGAAGAAACTGC+AGG - chr7_3:82287461-82287480 None:intergenic 50.0%
AGAATTTCTCAGCTCCAGCG+CGG - chr7_3:82287486-82287505 None:intergenic 50.0%
CAATGCAGCAGAAGGTTGTG+GGG - chr7_3:82287543-82287562 None:intergenic 50.0%
GCAATGCAGCAGAAGGTTGT+GGG - chr7_3:82287544-82287563 None:intergenic 50.0%
TGACCAACATTGACAGCCAG+AGG + chr7_3:82288231-82288250 Msa1130170:CDS 50.0%
AAGTCCTAGAGCTGATGCTG+TGG + chr7_3:82288382-82288401 Msa1130170:CDS 50.0%
! GCTAACAGTTTCTGAGGGGA+TGG + chr7_3:82288468-82288487 Msa1130170:three_prime_UTR 50.0%
GTGGTGGCCCCCACATATAT+GGG - chr7_3:82285855-82285874 None:intergenic 55.0%
TGTGGTGGCCCCCACATATA+TGG - chr7_3:82285856-82285875 None:intergenic 55.0%
ATATATGTGGGGGCCACCAC+AGG + chr7_3:82285855-82285874 Msa1130170:CDS 55.0%
GATTGCCTGCTTTCAGCTCC+AGG - chr7_3:82286591-82286610 None:intergenic 55.0%
GGAAGTGACGGCAACACTTC+AGG + chr7_3:82286779-82286798 Msa1130170:CDS 55.0%
TTGACCTGTGACACCAGCAG+GGG - chr7_3:82287429-82287448 None:intergenic 55.0%
! GAAGGTTGTGGGGCACTTGT+GGG - chr7_3:82287533-82287552 None:intergenic 55.0%
! AGAAGGTTGTGGGGCACTTG+TGG - chr7_3:82287534-82287553 None:intergenic 55.0%
GGCAATGCAGCAGAAGGTTG+TGG - chr7_3:82287545-82287564 None:intergenic 55.0%
CGTACCTGTATCCAAGCCTC+GGG - chr7_3:82287569-82287588 None:intergenic 55.0%
CCGTACCTGTATCCAAGCCT+CGG - chr7_3:82287570-82287589 None:intergenic 55.0%
CCGAGGCTTGGATACAGGTA+CGG + chr7_3:82287567-82287586 Msa1130170:intron 55.0%
AGCGTGAACTGAAGCGTGAG+AGG + chr7_3:82287734-82287753 Msa1130170:CDS 55.0%
GTGAACTGAAGCGTGAGAGG+AGG + chr7_3:82287737-82287756 Msa1130170:CDS 55.0%
CTGCTAGGAGGTCCAGACTA+AGG + chr7_3:82287779-82287798 Msa1130170:CDS 55.0%
GAGGTCCAGACTAAGGAAGC+AGG + chr7_3:82287786-82287805 Msa1130170:CDS 55.0%
CGTGCTTATTCCCTCCCTTC+AGG + chr7_3:82287948-82287967 Msa1130170:intron 55.0%
TATTCCCTCCCTTCAGGCTG+AGG + chr7_3:82287954-82287973 Msa1130170:intron 55.0%
TTCTTCGGCCTCAGCCTGAA+GGG - chr7_3:82287965-82287984 None:intergenic 55.0%
GGTCCTCTGGCTGTCAATGT+TGG - chr7_3:82288237-82288256 None:intergenic 55.0%
TACTTACAGGTGCGGTCCTC+TGG - chr7_3:82288250-82288269 None:intergenic 55.0%
TCCTGATTGGGCAGCCATGC+AGG + chr7_3:82285461-82285480 Msa1130170:CDS 60.0%
ACCTGCATGGCTGCCCAATC+AGG - chr7_3:82285465-82285484 None:intergenic 60.0%
GGAGTGTGACCAGAAGCCAC+AGG - chr7_3:82285829-82285848 None:intergenic 60.0%
GGCCCCCACATATATGGGTG+AGG - chr7_3:82285850-82285869 None:intergenic 60.0%
CAGGCTCAGCACTCTCAGCA+TGG - chr7_3:82286572-82286591 None:intergenic 60.0%
!! CATGCTGAGAGTGCTGAGCC+TGG + chr7_3:82286570-82286589 Msa1130170:CDS 60.0%
CTGAGCCTGGAGCTGAAAGC+AGG + chr7_3:82286583-82286602 Msa1130170:CDS 60.0%
! CAGTGGTCGGTGTTCCCTCA+CGG - chr7_3:82286967-82286986 None:intergenic 60.0%
ATGATGGCAGTTGCCCCTGC+TGG + chr7_3:82287413-82287432 Msa1130170:CDS 60.0%
ATTTCTCAGCTCCAGCGCGG+TGG - chr7_3:82287483-82287502 None:intergenic 60.0%
TCGGGAGGCAATGCAGCAGA+AGG - chr7_3:82287551-82287570 None:intergenic 60.0%
TTCTGCTGCATTGCCTCCCG+AGG + chr7_3:82287550-82287569 Msa1130170:CDS 60.0%
ACCTGTATCCAAGCCTCGGG+AGG - chr7_3:82287566-82287585 None:intergenic 60.0%
GTTCTTCGGCCTCAGCCTGA+AGG - chr7_3:82287966-82287985 None:intergenic 60.0%
TCAGGCTGAGGCCGAAGAAC+TGG + chr7_3:82287966-82287985 Msa1130170:intron 60.0%
GCAGCCACAGCATCAGCTCT+AGG - chr7_3:82288389-82288408 None:intergenic 60.0%
AGAGCTGATGCTGTGGCTGC+TGG + chr7_3:82288389-82288408 Msa1130170:CDS 60.0%
CGTGAGGGAACACCGACCAC+TGG + chr7_3:82286965-82286984 Msa1130170:CDS 65.0%
!! GTTGCCCCTGCTGGTGTCAC+AGG + chr7_3:82287422-82287441 Msa1130170:CDS 65.0%
TTCAGCGATGACCACCGCGC+TGG + chr7_3:82287469-82287488 Msa1130170:CDS 65.0%
CTGCATTGCCTCCCGAGGCT+TGG + chr7_3:82287555-82287574 Msa1130170:CDS 65.0%
GCCTCCCGAGGCTTGGATAC+AGG + chr7_3:82287562-82287581 Msa1130170:CDS 65.0%
TCGGCCTCAGCCTGAAGGGA+GGG - chr7_3:82287961-82287980 None:intergenic 65.0%
TTCGGCCTCAGCCTGAAGGG+AGG - chr7_3:82287962-82287981 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82283953 82288843 82283953 ID=Msa1130170;Name=Msa1130170
chr7_3 mRNA 82283953 82288843 82283953 ID=Msa1130170-mRNA-1;Parent=Msa1130170;Name=Msa1130170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=172|1|1|1|0.91|0.84|13|428|421
chr7_3 exon 82283953 82284115 82283953 ID=Msa1130170-mRNA-1:exon:24160;Parent=Msa1130170-mRNA-1
chr7_3 exon 82285264 82285335 82285264 ID=Msa1130170-mRNA-1:exon:24161;Parent=Msa1130170-mRNA-1
chr7_3 exon 82285429 82285482 82285429 ID=Msa1130170-mRNA-1:exon:24162;Parent=Msa1130170-mRNA-1
chr7_3 exon 82285781 82285876 82285781 ID=Msa1130170-mRNA-1:exon:24163;Parent=Msa1130170-mRNA-1
chr7_3 exon 82285971 82286051 82285971 ID=Msa1130170-mRNA-1:exon:24164;Parent=Msa1130170-mRNA-1
chr7_3 exon 82286327 82286368 82286327 ID=Msa1130170-mRNA-1:exon:24165;Parent=Msa1130170-mRNA-1
chr7_3 exon 82286456 82286616 82286456 ID=Msa1130170-mRNA-1:exon:24166;Parent=Msa1130170-mRNA-1
chr7_3 exon 82286754 82286802 82286754 ID=Msa1130170-mRNA-1:exon:24167;Parent=Msa1130170-mRNA-1
chr7_3 exon 82286938 82286986 82286938 ID=Msa1130170-mRNA-1:exon:24168;Parent=Msa1130170-mRNA-1
chr7_3 exon 82287348 82287583 82287348 ID=Msa1130170-mRNA-1:exon:24169;Parent=Msa1130170-mRNA-1
chr7_3 exon 82287730 82287807 82287730 ID=Msa1130170-mRNA-1:exon:24170;Parent=Msa1130170-mRNA-1
chr7_3 exon 82287970 82288095 82287970 ID=Msa1130170-mRNA-1:exon:24171;Parent=Msa1130170-mRNA-1
chr7_3 exon 82288185 82288843 82288185 ID=Msa1130170-mRNA-1:exon:24172;Parent=Msa1130170-mRNA-1
chr7_3 five_prime_UTR 82283953 82284115 82283953 ID=Msa1130170-mRNA-1:five_prime_utr;Parent=Msa1130170-mRNA-1
chr7_3 five_prime_UTR 82285264 82285272 82285264 ID=Msa1130170-mRNA-1:five_prime_utr;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82285273 82285335 82285273 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82285429 82285482 82285429 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82285781 82285876 82285781 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82285971 82286051 82285971 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82286327 82286368 82286327 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82286456 82286616 82286456 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82286754 82286802 82286754 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82286938 82286986 82286938 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82287348 82287583 82287348 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82287730 82287807 82287730 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82287970 82288095 82287970 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 CDS 82288185 82288415 82288185 ID=Msa1130170-mRNA-1:cds;Parent=Msa1130170-mRNA-1
chr7_3 three_prime_UTR 82288416 82288843 82288416 ID=Msa1130170-mRNA-1:three_prime_utr;Parent=Msa1130170-mRNA-1
Gene Sequence

>Msa1130170

ATGGGAAATAGTGACCAAGAGAAATCTACCAAGACTGAAAAGCCTTCTTCACCTGTAACAGTGGATCAGACCAACCAGACGAATGTTCATGTCTATCCTGATTGGGCAGCCATGCAGGCATATTATGGACCAAGAGTTGCCATGCCACCTTACTACAACTCACCTGTGGCTTCTGGTCACACTCCTCACCCATATATGTGGGGGCCACCACAGCATATGATGCCACCTTATGGACATCCTTATGCAGCAATGTATCCACATGGAGGGGTTTATACTCACCCTGCAGTTCCTATTGGTCCACATCCACATAGTCAAGGAATTTCATCTTCACCTGCTACTGGAACTCCTTTAAGCATAGAGACACCTCCCAAATCATCTGGAAATACTGATCAGGGTCTGATGAAGAAATTGAAAGGGTTTGATGGACTTGCAATGTCAATAGGCAATGGCCATGCTGAGAGTGCTGAGCCTGGAGCTGAAAGCAGGCAATCACAGAGTGTGAATACTGAGGGTTCGAGTGATGGAAGTGACGGCAACACTTCAGGGGCTAATCAAACAAGAAGGAAAAGAAGCCGTGAGGGAACACCGACCACTGATGGAGAAGGGAAAACTCATACACAAGGTAGTCAAGTTTCCAAAGAAATCTCAGTTTCTGATAAGATGATGGCAGTTGCCCCTGCTGGTGTCACAGGTCAATTAGTTGGACCTGCAGTTTCTTCAGCGATGACCACCGCGCTGGAGCTGAGAAATTCTTCCAGTGTTCATTCTAAAATAAATCCCACAAGTGCCCCACAACCTTCTGCTGCATTGCCTCCCGAGGCTTGGATACAGAATGAGCGTGAACTGAAGCGTGAGAGGAGGAAACAATCAAATCGAGAATCTGCTAGGAGGTCCAGACTAAGGAAGCAGGCTGAGGCCGAAGAACTGGCACGAAAAGTTGAATCCTTGAATGCTGAGAGTGCATCACTTAGATCAGAAATAAATCGACTTGCTGAGAAATCTGAAAGACTGAGGATGGAAAATGTTGCATTAAAGGAAAAATTTAAAATTGCTCAACTGGGACAACCAAAAGAGATAATTTTGACCAACATTGACAGCCAGAGGACCGCACCTGTAAGTACAGAAAACTTATTATCAAGAGTTAATAATAATTCGGGAACTGTGGAGGATGAAAATGGTTATTGTGACAACAAACCAAATTCTGGTGCGAAGTTGCACCAACTATTGGATGCAAGTCCTAGAGCTGATGCTGTGGCTGCTGGTTGA

Protein sequence

>Msa1130170

MGNSDQEKSTKTEKPSSPVTVDQTNQTNVHVYPDWAAMQAYYGPRVAMPPYYNSPVASGHTPHPYMWGPPQHMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQGISSSPATGTPLSIETPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEPGAESRQSQSVNTEGSSDGSDGNTSGANQTRRKRSREGTPTTDGEGKTHTQGSQVSKEISVSDKMMAVAPAGVTGQLVGPAVSSAMTTALELRNSSSVHSKINPTSAPQPSAALPPEAWIQNERELKRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSEINRLAEKSERLRMENVALKEKFKIAQLGQPKEIILTNIDSQRTAPVSTENLLSRVNNNSGTVEDENGYCDNKPNSGAKLHQLLDASPRADAVAAG*