AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1003460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003460 MtrunA17_Chr7g0214241 99.545 220 0 1 1 219 1 220 1.25e-160 442
Msa1003460 MtrunA17_Chr7g0234201 80.193 207 38 1 13 219 12 215 6.01e-120 339
Msa1003460 MtrunA17_Chr1g0189361 62.555 227 73 2 1 219 1 223 1.54e-97 283
Msa1003460 MtrunA17_Chr8g0381841 60.914 197 66 1 12 208 15 200 6.62e-85 251
Msa1003460 MtrunA17_Chr1g0174281 55.399 213 86 3 12 218 13 222 4.99e-84 249
Msa1003460 MtrunA17_Chr4g0032201 55.288 208 90 1 12 219 10 214 6.20e-84 248
Msa1003460 MtrunA17_Chr3g0123821 55.660 212 85 2 12 218 14 221 2.63e-83 247
Msa1003460 MtrunA17_Chr2g0315551 65.318 173 60 0 12 184 11 183 4.55e-82 243
Msa1003460 MtrunA17_Chr2g0319951 58.173 208 86 1 12 219 11 217 1.15e-81 243
Msa1003460 MtrunA17_Chr7g0231131 61.932 176 67 0 12 187 13 188 5.87e-81 241
Msa1003460 MtrunA17_Chr8g0351861 54.378 217 91 2 10 219 12 227 1.05e-80 240
Msa1003460 MtrunA17_Chr2g0276941 60.428 187 73 1 1 186 1 187 2.89e-80 239
Msa1003460 MtrunA17_Chr4g0040781 56.731 208 88 1 12 219 11 216 3.05e-80 239
Msa1003460 MtrunA17_Chr3g0112681 54.327 208 93 1 12 219 10 215 6.14e-80 238
Msa1003460 MtrunA17_Chr4g0046261 56.731 208 88 1 12 219 11 216 7.64e-80 238
Msa1003460 MtrunA17_Chr2g0325091 58.654 208 83 2 12 219 9 213 2.04e-79 236
Msa1003460 MtrunA17_Chr2g0283131 56.731 208 88 1 12 219 11 216 3.06e-79 236
Msa1003460 MtrunA17_Chr7g0275991 52.153 209 97 1 12 217 18 226 6.65e-74 223
Msa1003460 MtrunA17_Chr8g0346421 51.208 207 100 1 12 217 24 230 1.13e-72 220
Msa1003460 MtrunA17_Chr8g0392931 51.852 216 87 4 12 219 12 218 6.62e-67 205
Msa1003460 MtrunA17_Chr6g0482721 48.558 208 105 1 12 219 10 215 1.50e-65 201
Msa1003460 MtrunA17_Chr2g0290891 43.541 209 114 2 13 219 5 211 7.33e-59 184
Msa1003460 MtrunA17_Chr6g0458081 43.810 210 114 2 12 219 4 211 1.74e-57 181
Msa1003460 MtrunA17_Chr8g0349711 44.498 209 113 2 13 219 5 212 1.20e-55 176
Msa1003460 MtrunA17_Chr7g0250531 48.276 174 90 0 12 185 6 179 1.26e-53 171
Msa1003460 MtrunA17_Chr2g0276931 42.927 205 112 1 1 205 1 200 5.69e-53 169
Msa1003460 MtrunA17_Chr4g0055651 46.857 175 93 0 12 186 6 180 1.64e-52 168
Msa1003460 MtrunA17_Chr1g0212521 39.904 208 118 3 12 218 13 214 3.49e-51 165
Msa1003460 MtrunA17_Chr1g0182321 40.385 208 117 4 12 218 13 214 1.79e-50 163
Msa1003460 MtrunA17_Chr8g0335471 50.955 157 77 0 12 168 6 162 1.98e-50 162
Msa1003460 MtrunA17_Chr1g0182301 40.385 208 117 4 12 218 13 214 2.86e-50 162
Msa1003460 MtrunA17_Chr4g0030911 39.810 211 113 5 12 218 13 213 2.35e-49 160
Msa1003460 MtrunA17_Chr7g0263071 44.848 165 90 1 12 175 13 177 3.47e-48 157
Msa1003460 MtrunA17_Chr8g0349681 47.429 175 92 0 5 179 375 549 4.05e-48 166
Msa1003460 MtrunA17_Chr8g0349681 46.199 171 92 0 13 183 174 344 3.42e-47 163
Msa1003460 MtrunA17_Chr8g0349681 49.045 157 80 0 13 169 12 168 1.02e-45 159
Msa1003460 MtrunA17_Chr2g0327911 36.842 209 121 4 12 218 13 212 3.84e-47 154
Msa1003460 MtrunA17_Chr1g0199331 43.182 176 98 2 2 175 18 193 7.06e-47 153
Msa1003460 MtrunA17_Chr3g0109721 41.875 160 93 0 16 175 12 171 7.37e-44 145
Msa1003460 MtrunA17_Chr8g0384311 43.860 171 93 3 12 180 11 180 1.09e-42 143
Msa1003460 MtrunA17_Chr5g0433561 40.000 160 96 0 16 175 12 171 1.59e-41 139
Msa1003460 MtrunA17_Chr3g0123971 38.854 157 96 0 15 171 10 166 4.82e-41 139
Msa1003460 MtrunA17_Chr8g0382221 34.975 203 127 2 15 217 10 207 6.49e-41 138
Msa1003460 MtrunA17_Chr7g0265001 45.833 168 89 2 15 180 17 184 7.73e-41 138
Msa1003460 MtrunA17_Chr5g0400131 39.490 157 95 0 15 171 10 166 1.83e-40 137
Msa1003460 MtrunA17_Chr8g0390561 39.286 168 101 1 16 182 11 178 1.68e-39 134
Msa1003460 MtrunA17_Chr1g0180291 46.012 163 85 3 15 175 15 176 4.47e-39 134
Msa1003460 MtrunA17_Chr1g0159481 42.105 171 96 3 12 180 15 184 8.92e-39 133
Msa1003460 MtrunA17_Chr3g0130271 43.023 172 94 4 12 180 10 180 2.26e-38 132
Msa1003460 MtrunA17_Chr4g0055081 37.580 157 98 0 15 171 10 166 2.38e-38 132
Msa1003460 MtrunA17_Chr8g0383261 41.317 167 91 3 14 173 12 178 1.00e-37 130
Msa1003460 MtrunA17_Chr6g0466301 41.975 162 87 3 14 168 8 169 1.09e-37 130
Msa1003460 MtrunA17_Chr6g0465491 41.975 162 87 3 14 168 8 169 1.09e-37 130
Msa1003460 MtrunA17_Chr1g0197331 44.444 171 92 3 2 169 3 173 4.13e-37 129
Msa1003460 MtrunA17_Chr1g0201121 39.535 172 97 3 14 178 8 179 1.46e-36 127
Msa1003460 MtrunA17_Chr2g0331691 37.209 172 101 3 14 178 10 181 3.34e-35 124
Msa1003460 MtrunA17_Chr4g0034871 36.310 168 100 3 14 174 8 175 5.57e-35 123
Msa1003460 MtrunA17_Chr4g0004661 36.628 172 102 3 14 178 64 235 1.51e-33 121
Msa1003460 MtrunA17_Chr6g0465471 38.158 152 87 3 29 173 5 156 1.09e-25 99.4
Msa1003460 MtrunA17_Chr6g0466161 38.158 152 87 3 29 173 5 156 1.19e-25 99.4
Msa1003460 MtrunA17_Chr3g0138121 27.551 196 138 4 15 209 14 206 1.02e-22 91.7
Msa1003460 MtrunA17_Chr3g0138111 31.056 161 108 3 15 175 14 171 1.16e-22 91.7
Msa1003460 MtrunA17_Chr3g0138101 31.056 161 108 3 15 175 14 171 1.24e-22 91.7
Msa1003460 MtrunA17_Chr6g0466431 38.384 99 52 1 14 112 8 97 7.28e-19 78.6
Msa1003460 MtrunA17_Chr6g0465611 38.384 99 52 1 14 112 8 97 7.28e-19 78.6
Msa1003460 MtrunA17_Chr2g0325101 30.460 174 107 5 14 175 6 177 1.51e-18 80.1
Msa1003460 MtrunA17_Chr3g0117931 29.282 181 114 5 14 182 8 186 9.57e-18 78.2
Msa1003460 MtrunA17_Chr4g0037021 27.624 181 117 5 14 182 6 184 4.89e-17 76.3
Msa1003460 MtrunA17_Chr5g0405791 29.885 174 108 5 14 175 6 177 6.21e-17 75.9
Msa1003460 MtrunA17_Chr8g0371501 30.682 176 104 6 14 175 6 177 6.54e-17 75.9
Msa1003460 MtrunA17_Chr6g0486041 29.282 181 114 5 14 182 6 184 1.41e-16 75.1
Msa1003460 MtrunA17_Chr4g0046211 31.008 129 86 3 14 141 6 132 5.41e-15 69.3
Msa1003460 MtrunA17_Chr2g0331841 45.833 72 38 1 83 153 2 73 7.81e-14 65.1
Msa1003460 MtrunA17_Chr1g0178291 29.940 167 108 4 17 182 431 589 6.77e-13 67.0
Msa1003460 MtrunA17_Chr5g0443631 23.214 168 123 2 15 177 105 271 1.04e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003460 AT2G31680.1 83.410 217 34 2 4 219 2 217 2.64e-131 369
Msa1003460 AT1G05810.1 83.796 216 34 1 4 219 2 216 3.70e-131 368
Msa1003460 AT1G05810.2 83.796 216 34 1 4 219 48 262 5.27e-131 369
Msa1003460 AT2G43130.1 81.019 216 37 1 4 219 2 213 6.83e-127 357
Msa1003460 AT3G07410.1 78.571 210 44 1 10 219 8 216 1.05e-117 334
Msa1003460 AT5G47520.1 63.801 221 70 4 4 219 5 220 9.86e-96 278
Msa1003460 AT1G07410.1 55.769 208 88 2 12 219 10 213 1.63e-83 247
Msa1003460 AT3G12160.1 62.500 176 66 0 12 187 13 188 1.12e-82 245
Msa1003460 AT5G65270.1 64.740 173 61 0 12 184 15 187 1.25e-82 246
Msa1003460 AT4G18430.1 56.938 209 86 2 12 219 11 216 1.34e-82 245
Msa1003460 AT5G47960.1 65.318 173 60 0 12 184 13 185 1.93e-82 245
Msa1003460 AT5G60860.1 57.692 208 86 1 12 219 11 216 7.31e-82 243
Msa1003460 AT1G09630.1 53.365 208 95 1 12 219 10 215 1.28e-81 243
Msa1003460 AT4G39990.1 52.607 211 94 2 12 219 15 222 1.96e-81 242
Msa1003460 AT5G59150.1 63.158 171 63 0 12 182 10 180 5.11e-81 241
Msa1003460 AT1G16920.1 58.173 208 84 2 12 219 11 215 1.13e-80 240
Msa1003460 AT5G45750.1 55.769 208 89 2 12 219 11 215 5.72e-80 238
Msa1003460 AT4G18800.1 63.429 175 64 0 12 186 11 185 6.66e-80 238
Msa1003460 AT3G46830.1 62.573 171 64 0 12 182 10 180 7.04e-80 238
Msa1003460 AT3G46830.2 62.573 171 64 0 12 182 10 180 7.04e-80 238
Msa1003460 AT1G06400.1 58.470 183 76 0 12 194 11 193 1.82e-78 234
Msa1003460 AT1G28550.1 54.808 208 93 1 12 219 11 217 3.29e-78 234
Msa1003460 AT3G15060.1 54.808 208 92 1 12 219 11 216 5.56e-78 233
Msa1003460 AT2G33870.1 53.846 208 95 1 12 219 11 217 1.50e-77 232
Msa1003460 AT1G73640.1 58.140 172 72 0 12 183 11 182 3.72e-71 217
Msa1003460 AT1G18200.1 57.803 173 73 0 12 184 11 183 3.45e-70 214
Msa1003460 AT1G01200.1 51.429 210 98 3 12 217 26 235 9.00e-69 211
Msa1003460 AT4G17170.1 43.541 209 114 2 13 219 5 211 1.34e-58 184
Msa1003460 AT4G17160.1 44.175 206 109 2 13 218 5 204 5.36e-57 179
Msa1003460 AT4G35860.1 47.126 174 92 0 12 185 4 177 2.95e-56 178
Msa1003460 AT5G59150.2 60.630 127 50 0 56 182 3 129 4.24e-56 176
Msa1003460 AT3G11730.1 48.780 164 84 0 12 175 6 169 6.93e-51 164
Msa1003460 AT1G02130.1 49.682 157 79 0 12 168 6 162 1.98e-50 163
Msa1003460 AT4G17530.1 49.045 157 80 0 12 168 6 162 2.57e-50 162
Msa1003460 AT3G53610.2 39.904 208 118 4 12 218 13 214 2.31e-49 160
Msa1003460 AT3G53610.3 39.904 208 118 4 12 218 13 214 2.31e-49 160
Msa1003460 AT3G53610.1 39.904 208 118 4 12 218 13 214 2.31e-49 160
Msa1003460 AT3G09900.1 40.191 209 119 3 12 219 13 216 9.08e-49 159
Msa1003460 AT3G46060.2 39.423 208 119 4 12 218 13 214 1.38e-48 159
Msa1003460 AT3G46060.3 39.423 208 119 4 12 218 13 214 1.38e-48 159
Msa1003460 AT3G46060.1 39.423 208 119 4 12 218 13 214 1.38e-48 159
Msa1003460 AT5G47200.1 48.408 157 81 0 12 168 6 162 2.22e-48 157
Msa1003460 AT5G59840.1 38.942 208 120 4 12 218 13 214 3.39e-48 157
Msa1003460 AT5G03520.1 40.191 209 117 4 12 219 13 214 7.32e-48 157
Msa1003460 AT3G54840.1 44.767 172 90 2 16 186 35 202 3.36e-46 152
Msa1003460 AT3G54840.3 44.444 171 90 2 17 186 2 168 6.68e-46 150
Msa1003460 AT3G54840.2 47.097 155 81 1 16 169 35 189 9.66e-46 150
Msa1003460 AT4G19640.1 41.250 160 94 0 16 175 12 171 8.16e-45 148
Msa1003460 AT5G45130.1 39.216 204 109 4 16 219 12 200 3.37e-44 147
Msa1003460 AT5G45130.2 39.109 202 108 4 18 219 22 208 3.69e-43 144
Msa1003460 AT1G43890.3 46.199 171 89 3 12 180 11 180 1.82e-42 143
Msa1003460 AT1G43890.1 46.199 171 89 3 12 180 11 180 1.82e-42 143
Msa1003460 AT1G43890.2 46.199 171 89 3 12 180 11 180 1.82e-42 143
Msa1003460 AT4G35860.2 47.656 128 67 0 58 185 4 131 5.65e-42 140
Msa1003460 AT5G10260.1 39.490 157 95 0 15 171 10 166 2.09e-41 140
Msa1003460 AT2G44610.1 36.275 204 124 3 15 217 10 208 2.36e-40 137
Msa1003460 AT2G22290.1 38.854 157 96 0 15 171 10 166 3.57e-40 137
Msa1003460 AT4G39890.1 37.975 158 97 1 15 171 10 167 3.86e-39 134
Msa1003460 AT5G03530.2 45.062 162 86 3 10 169 9 169 6.21e-38 131
Msa1003460 AT5G03530.1 45.062 162 86 3 10 169 9 169 6.21e-38 131
Msa1003460 AT5G64990.1 38.961 154 94 0 15 168 8 161 6.55e-38 131
Msa1003460 AT5G03520.2 38.372 172 98 4 49 219 40 204 3.67e-37 129
Msa1003460 AT2G21880.1 41.975 162 87 3 14 168 9 170 4.50e-37 129
Msa1003460 AT1G22740.1 41.317 167 91 3 14 173 8 174 6.95e-37 128
Msa1003460 AT1G52280.1 37.791 172 100 3 14 178 8 179 1.74e-35 125
Msa1003460 AT5G64990.2 35.673 171 103 1 15 178 8 178 3.37e-35 124
Msa1003460 AT3G18820.1 38.095 168 97 3 14 174 8 175 3.62e-35 124
Msa1003460 AT4G09720.1 38.953 172 98 3 14 178 8 179 1.54e-34 122
Msa1003460 AT4G19640.3 37.580 157 97 1 16 172 12 167 8.22e-34 120
Msa1003460 AT4G09720.4 38.418 177 97 4 14 178 8 184 8.26e-34 120
Msa1003460 AT3G16100.1 37.209 172 101 3 14 178 8 179 1.69e-33 119
Msa1003460 AT4G19640.2 39.231 130 79 0 16 145 12 141 2.39e-33 117
Msa1003460 AT5G46025.1 55.660 106 46 1 76 180 6 111 5.55e-33 115
Msa1003460 AT4G09720.3 36.612 183 98 3 14 178 8 190 1.23e-32 117
Msa1003460 AT3G09910.5 39.535 172 101 3 10 179 9 179 4.13e-32 115
Msa1003460 AT3G09910.4 39.535 172 101 3 10 179 9 179 4.13e-32 115
Msa1003460 AT1G49300.2 37.654 162 94 3 14 168 8 169 5.57e-32 115
Msa1003460 AT1G49300.1 37.654 162 94 3 14 168 8 169 5.57e-32 115
Msa1003460 AT3G09910.3 35.648 216 113 5 10 219 9 204 9.47e-32 115
Msa1003460 AT3G09910.1 35.648 216 113 5 10 219 9 204 9.47e-32 115
Msa1003460 AT3G09910.2 35.648 216 113 5 10 219 9 204 9.47e-32 115
Msa1003460 AT5G39620.1 34.574 188 115 4 11 191 2 188 3.29e-30 111
Msa1003460 AT2G21880.4 40.000 145 80 3 31 168 1 145 1.33e-28 106
Msa1003460 AT2G21880.3 40.000 145 80 3 31 168 1 145 1.33e-28 106
Msa1003460 AT2G21880.2 37.037 162 87 4 14 168 9 162 3.44e-27 103
Msa1003460 AT4G09720.6 37.931 145 83 3 41 178 1 145 2.08e-23 92.8
Msa1003460 AT4G09720.5 37.931 145 83 3 41 178 1 145 2.08e-23 92.8
Msa1003460 AT4G09720.2 37.931 145 83 3 41 178 1 145 2.08e-23 92.8
Msa1003460 AT5G55080.1 29.814 161 110 3 15 175 14 171 2.45e-23 94.0
Msa1003460 AT5G20020.1 31.056 161 108 3 15 175 14 171 1.22e-22 92.0
Msa1003460 AT5G20010.1 31.056 161 108 3 15 175 14 171 1.88e-22 91.7
Msa1003460 AT5G55190.1 31.056 161 108 3 15 175 14 171 2.11e-22 91.3
Msa1003460 AT2G44690.1 33.333 180 106 6 14 181 18 195 3.08e-22 90.5
Msa1003460 AT4G35020.1 29.885 174 108 5 14 175 6 177 1.81e-17 77.8
Msa1003460 AT4G35020.2 29.885 174 108 5 14 175 6 177 1.81e-17 77.8
Msa1003460 AT4G35020.3 29.885 174 108 5 14 175 6 177 1.81e-17 77.8
Msa1003460 AT5G62880.1 29.310 174 109 5 14 175 8 179 1.84e-17 78.2
Msa1003460 AT5G45970.1 30.233 172 106 6 14 173 6 175 3.02e-17 77.0
Msa1003460 AT1G75840.1 30.682 176 104 6 14 175 6 177 1.01e-16 75.5
Msa1003460 AT3G48040.1 28.736 174 110 5 14 175 8 179 1.10e-16 75.9
Msa1003460 AT4G28950.1 28.492 179 116 5 14 182 6 182 1.44e-16 75.5
Msa1003460 AT4G35950.1 30.682 176 104 5 14 175 6 177 1.56e-16 75.1
Msa1003460 AT3G51300.1 30.233 172 106 5 16 175 8 177 1.71e-16 75.1
Msa1003460 AT2G17800.2 31.250 176 103 6 14 175 6 177 2.29e-16 74.7
Msa1003460 AT2G17800.1 31.250 176 103 6 14 175 6 177 2.29e-16 74.7
Msa1003460 AT1G20090.1 28.161 174 111 5 14 175 5 176 3.58e-16 74.3
Msa1003460 AT5G62880.2 31.655 139 85 4 14 151 8 137 3.49e-14 68.6
Msa1003460 AT4G08190.1 46.875 64 31 1 105 168 67 127 7.09e-14 66.2
Msa1003460 AT4G35020.4 33.333 114 73 3 16 128 8 119 1.64e-13 65.9
Msa1003460 AT4G35020.5 33.333 114 73 3 16 128 8 119 1.64e-13 65.9
Msa1003460 AT3G48040.2 31.034 145 90 4 14 157 8 143 1.74e-13 66.6

Find 57 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAATTGTATGTATAATT+TGG 0.124708 7_1:+617379 Msa1003460:three_prime_UTR
TTTCTTGCTGTTCCTGAATT+TGG 0.127507 7_1:+617206 Msa1003460:exon
TTCAATTGTATGTATAATTT+GGG 0.211241 7_1:+617380 Msa1003460:three_prime_UTR
TTCATCAAACATGCCATAAA+TGG 0.229197 7_1:-617444 None:intergenic
ATGAAGTGGACATCCATTTA+TGG 0.234933 7_1:+617431 Msa1003460:three_prime_UTR
AAGAAGTTAAAGCTCAGATT+TGG 0.265031 7_1:+615614 Msa1003460:CDS
TTGATTAATTAAAATTGAAT+TGG 0.266208 7_1:+617241 Msa1003460:three_prime_UTR
TTCAACTCCGATCGTTGCTT+TGG 0.339177 7_1:-615560 None:intergenic
TTTCATGGAAACCTCTGCTT+TGG 0.343525 7_1:+617018 Msa1003460:CDS
AAAGAAGAAAAGGGAAATAT+AGG 0.348857 7_1:+609603 Msa1003460:five_prime_UTR
GATTGTTGTTCTTGATTAAT+CGG 0.349311 7_1:+617478 Msa1003460:three_prime_UTR
AAAATAGCCTTTGCTTTGCT+TGG 0.356179 7_1:-617185 None:intergenic
TGATTAATTAAAATTGAATT+GGG 0.378127 7_1:+617242 Msa1003460:three_prime_UTR
GTTTGTCAATGTTACATTCA+AGG 0.384154 7_1:+617534 Msa1003460:three_prime_UTR
AGGCTGAATTATCTGTCAAC+AGG 0.387029 7_1:+617131 Msa1003460:CDS
CTCTTCAAAGTCGTTATAAT+CGG 0.399662 7_1:+615472 Msa1003460:CDS
AGAAGTTAAAGCTCAGATTT+GGG 0.412522 7_1:+615615 Msa1003460:CDS
TAATTAAAATTGAATTGGGT+TGG 0.421073 7_1:+617246 Msa1003460:three_prime_UTR
ATGTAACATTGACAAACAAT+AGG 0.438117 7_1:-617528 None:intergenic
GGTGGGAAACAAGTGTGATT+TGG 0.440037 7_1:+616934 Msa1003460:CDS
GCTTATTATCGTGGTGCTGT+TGG 0.462704 7_1:+615676 Msa1003460:CDS
TGTAATTTCAGTTAATGAAG+TGG 0.484199 7_1:+617417 Msa1003460:three_prime_UTR
AGCGTATCGTGAGAGGAGAT+TGG 0.495642 7_1:-615515 None:intergenic
AGATATACAACAATGTTAGC+AGG 0.522828 7_1:+617083 Msa1003460:CDS
GAATCGCAGCTTGTCCGTCC+AGG 0.527300 7_1:+609682 Msa1003460:five_prime_UTR
GTTACTTCTGCTTATTATCG+TGG 0.541558 7_1:+615667 Msa1003460:CDS
CCTCAACTCAGACACTTACA+AGG 0.545261 7_1:+617111 Msa1003460:CDS
TCAATTGTATGTATAATTTG+GGG 0.546528 7_1:+617381 Msa1003460:three_prime_UTR
AGTTCAGAAGACGAAGGAGG+AGG 0.552796 7_1:+615439 Msa1003460:CDS
AAAAGTCTTGCGGAATCAGA+AGG 0.554276 7_1:+616989 Msa1003460:CDS
GCTCAGATTTGGGATACTGC+TGG 0.571910 7_1:+615625 Msa1003460:CDS
AATTGTATGTATAATTTGGG+GGG 0.573000 7_1:+617383 Msa1003460:three_prime_UTR
ATAATCGGTGACTCCGCCGT+TGG 0.575874 7_1:+615487 Msa1003460:CDS
CAATTGTATGTATAATTTGG+GGG 0.575975 7_1:+617382 Msa1003460:three_prime_UTR
TACGACGGTGGCAATGATGC+TGG 0.577423 7_1:+616913 Msa1003460:CDS
AGAGATGTGAGCATTGAAGA+AGG 0.582505 7_1:+616965 Msa1003460:CDS
CCTTGTAAGTGTCTGAGTTG+AGG 0.585872 7_1:-617111 None:intergenic
CGTTGCGAGCGTATCGTGAG+AGG 0.597765 7_1:-615522 None:intergenic
CAAAAGACTATATATAGCAA+TGG 0.603813 7_1:+617322 Msa1003460:three_prime_UTR
ATTTGTAGAGTCCAAAGCAG+AGG 0.603895 7_1:-617029 None:intergenic
CTTCATTCCAAAGCAACGAT+CGG 0.608692 7_1:+615553 Msa1003460:CDS
CGGACAAGCTGCGATTCAAG+TGG 0.620842 7_1:-609676 None:intergenic
GAGGAGATTGGATTTACCAA+CGG 0.633949 7_1:-615503 None:intergenic
TCTACATCCAAGCAAAGCAA+AGG 0.634847 7_1:+617178 Msa1003460:CDS
TGAAGAAGGCAAAAGTCTTG+CGG 0.635809 7_1:+616979 Msa1003460:CDS
GGCTGAATTATCTGTCAACA+GGG 0.647451 7_1:+617132 Msa1003460:CDS
TGTTGTTCTTGATTAATCGG+TGG 0.652261 7_1:+617481 Msa1003460:three_prime_UTR
TCAAGTTCAGAAGACGAAGG+AGG 0.656404 7_1:+615436 Msa1003460:CDS
GAAGTGAACAACAACCTGGA+CGG 0.656559 7_1:-609696 None:intergenic
AGGGTCAGTCTTGTTAACAA+TGG 0.671243 7_1:+617151 Msa1003460:CDS
ATACAACAATGTTAGCAGGA+AGG 0.674114 7_1:+617087 Msa1003460:CDS
GACGGTGGCAATGATGCTGG+TGG 0.677201 7_1:+616916 Msa1003460:CDS
TGCAGCTCATTGTGATACGA+CGG 0.692981 7_1:+616898 Msa1003460:intron
AGCTCATTGTGATACGACGG+TGG 0.708088 7_1:+616901 Msa1003460:intron
GAGATTGGATTTACCAACGG+CGG 0.710073 7_1:-615500 None:intergenic
ACGGTGGCAATGATGCTGGT+GGG 0.711154 7_1:+616917 Msa1003460:CDS
ATGTCAAGTTCAGAAGACGA+AGG 0.732589 7_1:+615433 Msa1003460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATTAATTAAAATTGAAT+TGG + chr7_1:611618-611637 Msa1003460:intron 10.0%
!! TGATTAATTAAAATTGAATT+GGG + chr7_1:611619-611638 Msa1003460:intron 10.0%
!! ATTATTCATATTACTTAAAT+AGG - chr7_1:612161-612180 None:intergenic 10.0%
!! TTTAATCATAACTAAATTAT+GGG - chr7_1:612823-612842 None:intergenic 10.0%
!! ATTTAATCATAACTAAATTA+TGG - chr7_1:612824-612843 None:intergenic 10.0%
!!! ATTTATTTAAGTTTTTAAAG+TGG + chr7_1:612842-612861 Msa1003460:intron 10.0%
!!! CATTTTAAATGTAAAAAAAA+TGG + chr7_1:614377-614396 Msa1003460:intron 10.0%
!!! TTTTAAATGTAAAAAAAATG+GGG + chr7_1:614379-614398 Msa1003460:intron 10.0%
!!! TTTTAAAAACATGATTAAAT+AGG + chr7_1:614686-614705 Msa1003460:intron 10.0%
!!! GTTTCTTTTTTAAATAAATT+TGG - chr7_1:615190-615209 None:intergenic 10.0%
!! ATTTAAAAAAGAAACAATAA+AGG + chr7_1:615195-615214 Msa1003460:intron 10.0%
!! AAAAAAAAAGAAAGAAATAT+AGG + chr7_1:615315-615334 Msa1003460:intron 10.0%
!! TTGATTAATTAAAATTGAAT+TGG + chr7_1:611618-611637 Msa1003460:intron 10.0%
!! TGATTAATTAAAATTGAATT+GGG + chr7_1:611619-611638 Msa1003460:intron 10.0%
!! AATGAAAAAAAAAGAAGAAA+AGG + chr7_1:609593-609612 Msa1003460:five_prime_UTR 15.0%
!! ATGAAAAAAAAAGAAGAAAA+GGG + chr7_1:609594-609613 Msa1003460:five_prime_UTR 15.0%
!! ATGATATATATTTGATTACA+TGG + chr7_1:610374-610393 Msa1003460:intron 15.0%
!!! TTAGAACCATTATTTTTAAA+TGG + chr7_1:612901-612920 Msa1003460:intron 15.0%
!! AAATCACTTATTTCAATAAA+AGG + chr7_1:613348-613367 Msa1003460:intron 15.0%
!! AATCACTTATTTCAATAAAA+GGG + chr7_1:613349-613368 Msa1003460:intron 15.0%
!!! ATAAATTTTGATGACTTTTA+AGG - chr7_1:613669-613688 None:intergenic 15.0%
!! TAAAAGTCATCAAAATTTAT+TGG + chr7_1:613669-613688 Msa1003460:intron 15.0%
!!! AACTTTTTATAATTTCTAAC+TGG - chr7_1:613821-613840 None:intergenic 15.0%
!! GTTAGAAATTATAAAAAGTT+AGG + chr7_1:613821-613840 Msa1003460:intron 15.0%
!!! TTATTTATATCCTTAGTTTT+TGG - chr7_1:615041-615060 None:intergenic 15.0%
!! AGTATGATATAATTAGAAAT+AGG + chr7_1:615070-615089 Msa1003460:intron 15.0%
!!! TTTAAATTATCATTTCCTTT+TGG + chr7_1:615093-615112 Msa1003460:intron 15.0%
!! ATGATAAAATTATTATATCC+TGG - chr7_1:615140-615159 None:intergenic 15.0%
!!! GTTAATTTATGTTATGTTTT+TGG + chr7_1:615813-615832 Msa1003460:intron 15.0%
!! TATGATATATATTTGATTAC+AGG + chr7_1:610373-610392 Msa1003460:intron 15.0%
!! ATGATATATATTTGATTACA+GGG + chr7_1:610374-610393 Msa1003460:intron 15.0%
!!! TATCTTCAATTTTAAGTAAA+CGG + chr7_1:617355-617374 Msa1003460:three_prime_UTR 15.0%
!! TTTCAATTGTATGTATAATT+TGG + chr7_1:617379-617398 Msa1003460:three_prime_UTR 15.0%
!! TTCAATTGTATGTATAATTT+GGG + chr7_1:617380-617399 Msa1003460:three_prime_UTR 15.0%
!! TGTCTATATATACTTTCTAT+AGG - chr7_1:610512-610531 None:intergenic 20.0%
!! TACTAGTATATATCAATGAT+AGG + chr7_1:610633-610652 Msa1003460:intron 20.0%
!!! AATTTCTCCTAGTTTTTTAT+AGG - chr7_1:610785-610804 None:intergenic 20.0%
!! AACACTTACTATTAGAAATA+TGG - chr7_1:611001-611020 None:intergenic 20.0%
!!! ATTATACATAGTTTTTAGAG+AGG - chr7_1:611142-611161 None:intergenic 20.0%
!! AAAACTATGTATAATTGCTA+TGG + chr7_1:611147-611166 Msa1003460:intron 20.0%
!! TAATTAAAATTGAATTGGGT+TGG + chr7_1:611623-611642 Msa1003460:intron 20.0%
!!! GAATATCTTTGAATAGTTTT+TGG + chr7_1:611662-611681 Msa1003460:intron 20.0%
!!! TATATATATAGTCTTTTGTG+TGG - chr7_1:611700-611719 None:intergenic 20.0%
!! AGACTATATATATATAGCAA+TGG + chr7_1:611706-611725 Msa1003460:intron 20.0%
!! AGTGTTCCATTTAAAAATAA+TGG - chr7_1:612910-612929 None:intergenic 20.0%
!! TTAAATATAGTCATATGTGT+AGG - chr7_1:613118-613137 None:intergenic 20.0%
!! TTTAAATCTTCAGAATAATC+AGG + chr7_1:613133-613152 Msa1003460:intron 20.0%
!!! ACATGCTAATATTTTCTTTT+CGG - chr7_1:613753-613772 None:intergenic 20.0%
!!! TGAGGTAGTTTTTAAAAATT+TGG + chr7_1:613793-613812 Msa1003460:intron 20.0%
!!! GAGGTAGTTTTTAAAAATTT+GGG + chr7_1:613794-613813 Msa1003460:intron 20.0%
!!! TTCTTGATTGATAACATATT+TGG - chr7_1:613917-613936 None:intergenic 20.0%
!! AATATGTTATCAATCAAGAA+AGG + chr7_1:613917-613936 Msa1003460:intron 20.0%
!! AATGAAAAACCACAAATTTA+AGG - chr7_1:614025-614044 None:intergenic 20.0%
!! AAAAAAATGTGCTTCTAAAT+AGG - chr7_1:614262-614281 None:intergenic 20.0%
!!! TGGTTTTTTTCCATATAATT+TGG - chr7_1:614458-614477 None:intergenic 20.0%
!!! TTTTCTTAATAAGTGTGATT+TGG - chr7_1:614478-614497 None:intergenic 20.0%
!!! ACTATTGACTATAGAAAAAA+TGG + chr7_1:614582-614601 Msa1003460:intron 20.0%
!!! AAAACTTTTGTTTATTCTCA+TGG - chr7_1:614644-614663 None:intergenic 20.0%
!! ATACGTATATGCAATAAATT+TGG + chr7_1:614796-614815 Msa1003460:intron 20.0%
!! GATAAGATATGATATGAAAA+TGG + chr7_1:614873-614892 Msa1003460:intron 20.0%
!! ATATGATATGAAAATGGATA+AGG + chr7_1:614879-614898 Msa1003460:intron 20.0%
!! CTAAGGATATAAATAACAAA+TGG + chr7_1:615045-615064 Msa1003460:intron 20.0%
!!! TTATGTTATGTTTTTGGTTT+TGG + chr7_1:615819-615838 Msa1003460:intron 20.0%
!! AGTCTATATATACTTTCTAT+AGG - chr7_1:616143-616162 None:intergenic 20.0%
!! TACTAGTATATATCAATGAT+AGG + chr7_1:610633-610652 Msa1003460:intron 20.0%
!! AACACTTACTATTAGAAATA+TGG - chr7_1:611001-611020 None:intergenic 20.0%
!!! ATTATACATAGTTTTTAGAG+AGG - chr7_1:611142-611161 None:intergenic 20.0%
!! AAAACTATGTATAATTGCTA+TGG + chr7_1:611147-611166 Msa1003460:intron 20.0%
!! TAATTAAAATTGAATTGGGT+TGG + chr7_1:611623-611642 Msa1003460:intron 20.0%
!!! GAATATCTTTGAATAGTTTT+TGG + chr7_1:611662-611681 Msa1003460:intron 20.0%
!!! ATCTTCAATTTTAAGTAAAC+GGG + chr7_1:617356-617375 Msa1003460:three_prime_UTR 20.0%
!! TCAATTGTATGTATAATTTG+GGG + chr7_1:617381-617400 Msa1003460:three_prime_UTR 20.0%
! AAAGAAGAAAAGGGAAATAT+AGG + chr7_1:609603-609622 Msa1003460:five_prime_UTR 25.0%
! TAATTAATCTCACATTCCAA+AGG + chr7_1:610297-610316 Msa1003460:intron 25.0%
! AAGTATATATAGACACTGTT+TGG + chr7_1:610517-610536 Msa1003460:intron 25.0%
! AAGGGTGGAATTAAATTAAT+TGG + chr7_1:610584-610603 Msa1003460:intron 25.0%
! TAGGAAGTTACTTGATTATA+TGG + chr7_1:610652-610671 Msa1003460:intron 25.0%
! GTGAATACCTATAAAAAACT+AGG + chr7_1:610775-610794 Msa1003460:intron 25.0%
!!! TGCATTTTGAAAACTAAAAG+GGG - chr7_1:610850-610869 None:intergenic 25.0%
!!! GTGCATTTTGAAAACTAAAA+GGG - chr7_1:610851-610870 None:intergenic 25.0%
!!! AGTGCATTTTGAAAACTAAA+AGG - chr7_1:610852-610871 None:intergenic 25.0%
! ATGTTAAGCACAAATATGTA+GGG - chr7_1:610890-610909 None:intergenic 25.0%
! AATGTTAAGCACAAATATGT+AGG - chr7_1:610891-610910 None:intergenic 25.0%
!!! AATGTACTCTAGTGTTTTTT+TGG - chr7_1:610945-610964 None:intergenic 25.0%
! CTTACTATTAGAAATATGGA+AGG - chr7_1:610997-611016 None:intergenic 25.0%
!!! TTTTTTTTTAGTGAGGATAC+AGG + chr7_1:611042-611061 Msa1003460:intron 25.0%
!! TTAAGCCTATTTAGCTTAAA+AGG + chr7_1:612089-612108 Msa1003460:intron 25.0%
! TTCATATTACTTAAATAGGC+CGG - chr7_1:612157-612176 None:intergenic 25.0%
!! ATAATCAACACAAGGTTTTA+GGG - chr7_1:612343-612362 None:intergenic 25.0%
! CAATGTGATCTAAGTTTAAA+TGG - chr7_1:612407-612426 None:intergenic 25.0%
!! TAAGATATACGCTTTTAAAC+AGG + chr7_1:612445-612464 Msa1003460:intron 25.0%
!!! TATTTTTTAAAGCCTAAGTC+TGG - chr7_1:612541-612560 None:intergenic 25.0%
!!! GACTTAGGCTTTAAAAAATA+TGG + chr7_1:612541-612560 Msa1003460:intron 25.0%
! AATGGATCATGTATTGAATA+AGG + chr7_1:612654-612673 Msa1003460:intron 25.0%
! CAAATTCGCTAAAAACAAAA+AGG + chr7_1:613030-613049 Msa1003460:intron 25.0%
! AAATAGATAAACGAGTTAGA+TGG + chr7_1:613372-613391 Msa1003460:intron 25.0%
!! TTTTACAATGCTAAGTTAGT+GGG + chr7_1:613852-613871 Msa1003460:intron 25.0%
!! GATAACATATTTGGAACTTA+GGG - chr7_1:613908-613927 None:intergenic 25.0%
!! TGATAACATATTTGGAACTT+AGG - chr7_1:613909-613928 None:intergenic 25.0%
!! TATTTCAAGCTTTGATCAAT+TGG - chr7_1:613946-613965 None:intergenic 25.0%
!! ACCACAAATTTAAGGTATTT+GGG - chr7_1:614017-614036 None:intergenic 25.0%
!! AACCACAAATTTAAGGTATT+TGG - chr7_1:614018-614037 None:intergenic 25.0%
!!! TTTTTTCCCTCAAGAAAAAT+TGG + chr7_1:614276-614295 Msa1003460:intron 25.0%
!! TCCATATAATTTGGAACATA+GGG - chr7_1:614449-614468 None:intergenic 25.0%
!! TTCCATATAATTTGGAACAT+AGG - chr7_1:614450-614469 None:intergenic 25.0%
!! ATTTGAAGTATAGTTGTTTG+TGG + chr7_1:614511-614530 Msa1003460:intron 25.0%
! ACTATAGAAAAAATGGAAGA+GGG + chr7_1:614589-614608 Msa1003460:intron 25.0%
!! AGTTTTTCTTGCTTACATTT+TGG + chr7_1:614753-614772 Msa1003460:intron 25.0%
! ATATGAAAATGGATAAGGAT+AGG + chr7_1:614884-614903 Msa1003460:intron 25.0%
!!! TTATATCCTTAGTTTTTGGT+GGG - chr7_1:615037-615056 None:intergenic 25.0%
!!! TTTATATCCTTAGTTTTTGG+TGG - chr7_1:615038-615057 None:intergenic 25.0%
! ATCAAACAACAAATTAAACC+AGG + chr7_1:615119-615138 Msa1003460:intron 25.0%
! TAATTAATCTCACATTCCAA+AGG + chr7_1:610297-610316 Msa1003460:intron 25.0%
! AAGTATATATAGACTCTGTT+TGG + chr7_1:616148-616167 Msa1003460:intron 25.0%
! AAGGGTGGAATTAAATTAAT+TGG + chr7_1:610584-610603 Msa1003460:intron 25.0%
!!! CAATTTCTCCTAGTTTTTAT+AGG - chr7_1:616410-616429 None:intergenic 25.0%
!!! TGCATTTTGAAAACTAAAAG+GGG - chr7_1:610850-610869 None:intergenic 25.0%
!!! GTGCATTTTGAAAACTAAAA+GGG - chr7_1:610851-610870 None:intergenic 25.0%
!!! AGTGCATTTTGAAAACTAAA+AGG - chr7_1:610852-610871 None:intergenic 25.0%
! ATGTTAAGCACAAATATGTA+GGG - chr7_1:610890-610909 None:intergenic 25.0%
! AATGTTAAGCACAAATATGT+AGG - chr7_1:610891-610910 None:intergenic 25.0%
! CTTACTATTAGAAATATGGA+AGG - chr7_1:610997-611016 None:intergenic 25.0%
!!! TTTTTTTTTAGTGAGGATAC+AGG + chr7_1:611042-611061 Msa1003460:intron 25.0%
!! TTGCTATATATAGTCTTTTG+TGG - chr7_1:617322-617341 None:intergenic 25.0%
! CAAAAGACTATATATAGCAA+TGG + chr7_1:617322-617341 Msa1003460:three_prime_UTR 25.0%
! CAATTGTATGTATAATTTGG+GGG + chr7_1:617382-617401 Msa1003460:three_prime_UTR 25.0%
! AATTGTATGTATAATTTGGG+GGG + chr7_1:617383-617402 Msa1003460:three_prime_UTR 25.0%
! TGTAATTTCAGTTAATGAAG+TGG + chr7_1:617417-617436 Msa1003460:three_prime_UTR 25.0%
!! GATTGTTGTTCTTGATTAAT+CGG + chr7_1:617478-617497 Msa1003460:three_prime_UTR 25.0%
! ATGTAACATTGACAAACAAT+AGG - chr7_1:617531-617550 None:intergenic 25.0%
CTCTTCAAAGTCGTTATAAT+CGG + chr7_1:609768-609787 Msa1003460:intron 30.0%
AAAGAAGTAAAGCTCAGATT+TGG + chr7_1:609909-609928 Msa1003460:intron 30.0%
AAGAAGTAAAGCTCAGATTT+GGG + chr7_1:609910-609929 Msa1003460:intron 30.0%
ATCTTGATTCACTCTTACTT+AGG + chr7_1:610198-610217 Msa1003460:intron 30.0%
! GATTACATGGTTTGAAATTG+AGG + chr7_1:610387-610406 Msa1003460:intron 30.0%
AAAAACACTAGAGTACATTC+AGG + chr7_1:610946-610965 Msa1003460:intron 30.0%
TTGTGAAAAAATGTTCGATG+TGG + chr7_1:611019-611038 Msa1003460:intron 30.0%
!!! GATGTGGTTTTTTTTTAGTG+AGG + chr7_1:611035-611054 Msa1003460:intron 30.0%
CTATGGTTAATTGTGATTGT+GGG + chr7_1:611164-611183 Msa1003460:intron 30.0%
!! ATCAGAAGGTTTGTTTTTCA+TGG + chr7_1:611380-611399 Msa1003460:intron 30.0%
AGATATACAACAATGTTAGC+AGG + chr7_1:611460-611479 Msa1003460:intron 30.0%
!!! TTCCTGAATTTGGTTTTTGT+TGG + chr7_1:611593-611612 Msa1003460:intron 30.0%
AACCAACAAAAACCAAATTC+AGG - chr7_1:611598-611617 None:intergenic 30.0%
CTCTATTTGAGAAAAAAGTC+TGG - chr7_1:612052-612071 None:intergenic 30.0%
ATAGGCTTAAAAAAAAGCTC+AGG - chr7_1:612079-612098 None:intergenic 30.0%
AAAAGCCTCTTAAGCTTATT+AGG + chr7_1:612131-612150 Msa1003460:intron 30.0%
! GATAATCAACACAAGGTTTT+AGG - chr7_1:612344-612363 None:intergenic 30.0%
!! CTCTTTTGATAATCAACACA+AGG - chr7_1:612351-612370 None:intergenic 30.0%
!! TAGGCTTTAAAAAATATGGC+AGG + chr7_1:612545-612564 Msa1003460:intron 30.0%
CAATACATGATCCATTAACA+AGG - chr7_1:612650-612669 None:intergenic 30.0%
!!! AAGTTTTTAAAGTGGAAGTG+AGG + chr7_1:612850-612869 Msa1003460:intron 30.0%
!!! AGTTTTTAAAGTGGAAGTGA+GGG + chr7_1:612851-612870 Msa1003460:intron 30.0%
!! GCTGTTTTATGCTATTAACA+TGG - chr7_1:613083-613102 None:intergenic 30.0%
! CTTCAGAATAATCAGGTTTT+CGG + chr7_1:613140-613159 Msa1003460:intron 30.0%
!! TTGTTTTTCTTGTTTCTCTC+AGG - chr7_1:613249-613268 None:intergenic 30.0%
! AGAAACTAGTGATTTTGTGA+CGG + chr7_1:613450-613469 Msa1003460:intron 30.0%
CTCGAGTGATAAAACATATT+CGG - chr7_1:613592-613611 None:intergenic 30.0%
AAAATTCTTGAAACATCGTC+TGG - chr7_1:613699-613718 None:intergenic 30.0%
GTAATGTTATTCAAGTAGTG+AGG + chr7_1:613775-613794 Msa1003460:intron 30.0%
CACTAACTTAGCATTGTAAA+AGG - chr7_1:613853-613872 None:intergenic 30.0%
! CTTTTACAATGCTAAGTTAG+TGG + chr7_1:613851-613870 Msa1003460:intron 30.0%
TTGAAATACAGTGGCAATTA+CGG + chr7_1:613958-613977 Msa1003460:intron 30.0%
ACCCAAATACCTTAAATTTG+TGG + chr7_1:614013-614032 Msa1003460:intron 30.0%
! ACACTACCAATTTTTCTTGA+GGG - chr7_1:614285-614304 None:intergenic 30.0%
! TACACTACCAATTTTTCTTG+AGG - chr7_1:614286-614305 None:intergenic 30.0%
ATAATGCATAATATATGCGG+GGG - chr7_1:614426-614445 None:intergenic 30.0%
GATAATGCATAATATATGCG+GGG - chr7_1:614427-614446 None:intergenic 30.0%
GGATAATGCATAATATATGC+GGG - chr7_1:614428-614447 None:intergenic 30.0%
GGGATAATGCATAATATATG+CGG - chr7_1:614429-614448 None:intergenic 30.0%
TCCCTATGTTCCAAATTATA+TGG + chr7_1:614445-614464 Msa1003460:intron 30.0%
ATAGTTGTTTGTGGTTTCTT+TGG + chr7_1:614520-614539 Msa1003460:intron 30.0%
GACTATAGAAAAAATGGAAG+AGG + chr7_1:614588-614607 Msa1003460:intron 30.0%
! TGTCTCTTTTGCTTACATTT+TGG + chr7_1:614718-614737 Msa1003460:intron 30.0%
CTCTTCAAAGTCGTTATAAT+CGG + chr7_1:609768-609787 Msa1003460:intron 30.0%
AAGAAGTTAAAGCTCAGATT+TGG + chr7_1:615614-615633 Msa1003460:CDS 30.0%
AGAAGTTAAAGCTCAGATTT+GGG + chr7_1:615615-615634 Msa1003460:CDS 30.0%
TAGGAAGTTACTTGATTACA+TGG + chr7_1:616276-616295 Msa1003460:intron 30.0%
TGTGAAGACCTATAAAAACT+AGG + chr7_1:616399-616418 Msa1003460:intron 30.0%
!!! GAATGTACTCTAGTGTTTTT+TGG - chr7_1:610946-610965 None:intergenic 30.0%
AAAAACACTAGAGTACATTC+AGG + chr7_1:610946-610965 Msa1003460:intron 30.0%
TTGTGAAAAAATGTTCGATG+TGG + chr7_1:611019-611038 Msa1003460:intron 30.0%
!!! GATGTGGTTTTTTTTTAGTG+AGG + chr7_1:611035-611054 Msa1003460:intron 30.0%
CTATGGTTAATTGTGATTGT+GGG + chr7_1:611164-611183 Msa1003460:intron 30.0%
!! ATCAGAAGGTTTGTTTTTCA+TGG + chr7_1:611380-611399 Msa1003460:intron 30.0%
AGATATACAACAATGTTAGC+AGG + chr7_1:611460-611479 Msa1003460:intron 30.0%
!!! TTCCTGAATTTGGTTTTTGT+TGG + chr7_1:611593-611612 Msa1003460:intron 30.0%
AACCAACAAAAACCAAATTC+AGG - chr7_1:611598-611617 None:intergenic 30.0%
TTCATCAAACATGCCATAAA+TGG - chr7_1:617447-617466 None:intergenic 30.0%
GTTTGTCAATGTTACATTCA+AGG + chr7_1:617534-617553 Msa1003460:three_prime_UTR 30.0%
CTTCATTCCAAAGCAACAAT+CGG + chr7_1:609849-609868 Msa1003460:intron 35.0%
GTTACTTCTGCTTATTATCG+TGG + chr7_1:609962-609981 Msa1003460:intron 35.0%
!!! AGAACTACTTTTGATAGCGT+TGG + chr7_1:610027-610046 Msa1003460:intron 35.0%
TAATCTCACATTCCAAAGGA+AGG + chr7_1:610301-610320 Msa1003460:intron 35.0%
AATCTCACTAGTACACTGTA+AGG + chr7_1:610565-610584 Msa1003460:intron 35.0%
ATCTCACTAGTACACTGTAA+GGG + chr7_1:610566-610585 Msa1003460:intron 35.0%
AAACTTTGATATTGCGGTTG+CGG + chr7_1:610697-610716 Msa1003460:intron 35.0%
TGAGCAAAAATATGCCAATG+TGG + chr7_1:610727-610746 Msa1003460:intron 35.0%
TATGCCAATGTGGTTGTAAT+TGG + chr7_1:610737-610756 Msa1003460:intron 35.0%
!!! TTTTTTAGTGAGGATACAGG+AGG + chr7_1:611045-611064 Msa1003460:intron 35.0%
CGTTTAAAGAGATCTCATGT+AGG + chr7_1:611104-611123 Msa1003460:intron 35.0%
GCTATGGTTAATTGTGATTG+TGG + chr7_1:611163-611182 Msa1003460:intron 35.0%
AATGCCTAAGTATAGCTAGA+AGG + chr7_1:611218-611237 Msa1003460:intron 35.0%
! TCAACCTTCTAGCTATACTT+AGG - chr7_1:611225-611244 None:intergenic 35.0%
ATACAACAATGTTAGCAGGA+AGG + chr7_1:611464-611483 Msa1003460:intron 35.0%
AAAATAGCCTTTGCTTTGCT+TGG - chr7_1:611565-611584 None:intergenic 35.0%
!! TTTCTTGCTGTTCCTGAATT+TGG + chr7_1:611583-611602 Msa1003460:intron 35.0%
CATTACGGTTAGTGGTAAAT+GGG - chr7_1:611941-611960 None:intergenic 35.0%
TCATTACGGTTAGTGGTAAA+TGG - chr7_1:611942-611961 None:intergenic 35.0%
TTGTTCCTCGTTTCTCATTA+CGG - chr7_1:611956-611975 None:intergenic 35.0%
TTCACTTACGACCTTGTTAA+TGG + chr7_1:612636-612655 Msa1003460:intron 35.0%
! GTCATGTCATTTGGTTAGTA+AGG + chr7_1:612773-612792 Msa1003460:intron 35.0%
AAAAGGATGAATCTGTGAAC+AGG + chr7_1:613047-613066 Msa1003460:intron 35.0%
ATGACGTCAAAGTCATTGAT+TGG + chr7_1:613176-613195 Msa1003460:intron 35.0%
! ACGAGTTAGATGGATGATTT+TGG + chr7_1:613382-613401 Msa1003460:intron 35.0%
! CGAGTTAGATGGATGATTTT+GGG + chr7_1:613383-613402 Msa1003460:intron 35.0%
GGAAAAAGAGAGATAGATCT+AGG + chr7_1:613488-613507 Msa1003460:intron 35.0%
! TTTTATCACTCGAGCTTTCT+GGG + chr7_1:613598-613617 Msa1003460:intron 35.0%
GATCAAAGCTTGAAATACAG+TGG + chr7_1:613949-613968 Msa1003460:intron 35.0%
TTGTTGTGTTCATAACCCTT+TGG - chr7_1:613994-614013 None:intergenic 35.0%
GTTGTAATATGTAGAGATCG+AGG - chr7_1:614185-614204 None:intergenic 35.0%
!!! TTTTTTGTCAAGTAGCCTAC+TGG + chr7_1:614342-614361 Msa1003460:intron 35.0%
!! ATGTGTGAGTTTTAACCAGT+AGG - chr7_1:614360-614379 None:intergenic 35.0%
!!! TTGCTTACATTTTGGAACGA+AGG + chr7_1:614761-614780 Msa1003460:intron 35.0%
!!! TGCTTACATTTTGGAACGAA+GGG + chr7_1:614762-614781 Msa1003460:intron 35.0%
ATCATATCATGTGCACCAAA+CGG - chr7_1:614850-614869 None:intergenic 35.0%
GGATAGGAAATGATATAGAC+AGG + chr7_1:614900-614919 Msa1003460:intron 35.0%
GTATGCATCAAACATGTGAT+AGG - chr7_1:614938-614957 None:intergenic 35.0%
TTCTAACCCACCAAAAACTA+AGG + chr7_1:615028-615047 Msa1003460:intron 35.0%
!! ATTTGGTGCACAAGATAGAT+AGG - chr7_1:615173-615192 None:intergenic 35.0%
GTTACTTCTGCTTATTATCG+TGG + chr7_1:609962-609981 Msa1003460:intron 35.0%
!!! AGAACTACTTTTGATAGCGT+TGG + chr7_1:610027-610046 Msa1003460:intron 35.0%
TAATCTCACATTCCAAAGGA+AGG + chr7_1:610301-610320 Msa1003460:intron 35.0%
! GATTACAGGGTTTGAAATTG+AGG + chr7_1:616018-616037 Msa1003460:intron 35.0%
AATCTCACTAGTACACTCTA+AGG + chr7_1:616189-616208 Msa1003460:intron 35.0%
ATCTCACTAGTACACTCTAA+GGG + chr7_1:616190-616209 Msa1003460:intron 35.0%
AAACTTTGATATTGCGGTTG+CGG + chr7_1:610697-610716 Msa1003460:intron 35.0%
! GAGCAAATATTTTGCCAATG+TGG + chr7_1:616352-616371 Msa1003460:intron 35.0%
TTTGCCAATGTGGTTGTAAT+TGG + chr7_1:616362-616381 Msa1003460:intron 35.0%
!!! TTTTTTAGTGAGGATACAGG+AGG + chr7_1:611045-611064 Msa1003460:intron 35.0%
CGTTTAAAGAGATCTCATGT+AGG + chr7_1:611104-611123 Msa1003460:intron 35.0%
GCTATGGTTAATTGTGATTG+TGG + chr7_1:611163-611182 Msa1003460:intron 35.0%
AATGCCTAAGTATAGCTAGA+AGG + chr7_1:611218-611237 Msa1003460:intron 35.0%
! TCAACCTTCTAGCTATACTT+AGG - chr7_1:611225-611244 None:intergenic 35.0%
ATACAACAATGTTAGCAGGA+AGG + chr7_1:611464-611483 Msa1003460:intron 35.0%
AAAATAGCCTTTGCTTTGCT+TGG - chr7_1:611565-611584 None:intergenic 35.0%
!! TTTCTTGCTGTTCCTGAATT+TGG + chr7_1:611583-611602 Msa1003460:intron 35.0%
ATGAAGTGGACATCCATTTA+TGG + chr7_1:617431-617450 Msa1003460:three_prime_UTR 35.0%
TGTTGTTCTTGATTAATCGG+TGG + chr7_1:617481-617500 Msa1003460:three_prime_UTR 35.0%
TAGAGAAGTGAACAACAACC+TGG - chr7_1:609703-609722 None:intergenic 40.0%
ATGTCAAGTTCAGAAGACGA+AGG + chr7_1:609730-609749 Msa1003460:intron 40.0%
GAGGAGATTGGATTTACCAA+CGG - chr7_1:609802-609821 None:intergenic 40.0%
! TTCAACACCGATTGTTGCTT+TGG - chr7_1:609859-609878 None:intergenic 40.0%
TTCCAAAGGAAGGAAAGAGA+TGG + chr7_1:610311-610330 Msa1003460:intron 40.0%
ATCCATCTCTTTCCTTCCTT+TGG - chr7_1:610316-610335 None:intergenic 40.0%
! ATGGTTTGAAATTGAGGTCG+TGG + chr7_1:610393-610412 Msa1003460:intron 40.0%
TGCCGCAAACTTTGATATTG+CGG + chr7_1:610425-610444 Msa1003460:intron 40.0%
TGCCGCAATATCAAAGTTTG+CGG - chr7_1:610430-610449 None:intergenic 40.0%
CGGCAAAGTATGAGCAATTA+TGG + chr7_1:610445-610464 Msa1003460:intron 40.0%
ATGAGCAATTATGGCAGATG+CGG + chr7_1:610454-610473 Msa1003460:intron 40.0%
CGCTGCAAACTTTGATATTG+CGG + chr7_1:610691-610710 Msa1003460:intron 40.0%
AGCACCAATTACAACCACAT+TGG - chr7_1:610744-610763 None:intergenic 40.0%
! CACAAATATGTAGGGAGTAC+AGG - chr7_1:610882-610901 None:intergenic 40.0%
AGGTCTAGTTATGTTCCTAG+CGG - chr7_1:610977-610996 None:intergenic 40.0%
!! AGAGATGTGAGCATTGAAGA+AGG + chr7_1:611342-611361 Msa1003460:intron 40.0%
TGAAGAAGGCAAAAGTCTTG+CGG + chr7_1:611356-611375 Msa1003460:intron 40.0%
AAAAGTCTTGCGGAATCAGA+AGG + chr7_1:611366-611385 Msa1003460:intron 40.0%
TTTCATGGAAACCTCTGCTT+TGG + chr7_1:611395-611414 Msa1003460:intron 40.0%
ATTTGTAGAGTCCAAAGCAG+AGG - chr7_1:611409-611428 None:intergenic 40.0%
!! TGTGAAGACAGCTTTTGAGA+TGG + chr7_1:611428-611447 Msa1003460:intron 40.0%
AGGCTGAATTATCTGTCAAC+AGG + chr7_1:611508-611527 Msa1003460:intron 40.0%
GGCTGAATTATCTGTCAACA+GGG + chr7_1:611509-611528 Msa1003460:intron 40.0%
!! AGGGTCAGTCTTGTTAACAA+TGG + chr7_1:611528-611547 Msa1003460:intron 40.0%
TCTACATCCAAGCAAAGCAA+AGG + chr7_1:611555-611574 Msa1003460:intron 40.0%
TAGTGGTAAATGGGTAACGA+AGG - chr7_1:611932-611951 None:intergenic 40.0%
TCGTTTCTCATTACGGTTAG+TGG - chr7_1:611949-611968 None:intergenic 40.0%
ACTAACCGTAATGAGAAACG+AGG + chr7_1:611948-611967 Msa1003460:intron 40.0%
TTTGAGAAAAAAGTCTGGCC+TGG - chr7_1:612047-612066 None:intergenic 40.0%
!! CCTGGCCTTTTAAGCTAAAT+AGG - chr7_1:612097-612116 None:intergenic 40.0%
! CCTATTTAGCTTAAAAGGCC+AGG + chr7_1:612094-612113 Msa1003460:intron 40.0%
!! AGCTTAAGAGGCTTTTTGAG+AGG - chr7_1:612127-612146 None:intergenic 40.0%
CTACTATTTAGGTCTGAGTC+TGG - chr7_1:612500-612519 None:intergenic 40.0%
CAGACTCAGACCTAAATAGT+AGG + chr7_1:612498-612517 Msa1003460:intron 40.0%
CTGTCATAGGCCTACTATTT+AGG - chr7_1:612511-612530 None:intergenic 40.0%
CTAAATAGTAGGCCTATGAC+AGG + chr7_1:612509-612528 Msa1003460:intron 40.0%
AAATATGGCAGGCTAGACTT+AGG + chr7_1:612556-612575 Msa1003460:intron 40.0%
AGGAAGTTGAGAGCTAAACA+TGG + chr7_1:612674-612693 Msa1003460:intron 40.0%
GGAAGTTGAGAGCTAAACAT+GGG + chr7_1:612675-612694 Msa1003460:intron 40.0%
GAAGTTGAGAGCTAAACATG+GGG + chr7_1:612676-612695 Msa1003460:intron 40.0%
CATAAGTTTCTCCGGTTTAG+GGG - chr7_1:612711-612730 None:intergenic 40.0%
GCATAAGTTTCTCCGGTTTA+GGG - chr7_1:612712-612731 None:intergenic 40.0%
TGCATAAGTTTCTCCGGTTT+AGG - chr7_1:612713-612732 None:intergenic 40.0%
AGGTAGTGCATAAGTTTCTC+CGG - chr7_1:612719-612738 None:intergenic 40.0%
CTTCACTTGGCTAATTTCAC+AGG - chr7_1:612739-612758 None:intergenic 40.0%
CTGTGAAATTAGCCAAGTGA+AGG + chr7_1:612737-612756 Msa1003460:intron 40.0%
AAGTGAAGGCTAGACATCAT+GGG + chr7_1:612751-612770 Msa1003460:intron 40.0%
ACATCATGGGTCATGTCATT+TGG + chr7_1:612764-612783 Msa1003460:intron 40.0%
! GTTTTATCACTCGAGCTTTC+TGG + chr7_1:613597-613616 Msa1003460:intron 40.0%
GTGCTTCTAAATAGGACAGA+TGG - chr7_1:614254-614273 None:intergenic 40.0%
! TAAAAAAAATGGGGTGTCCG+AGG + chr7_1:614388-614407 Msa1003460:intron 40.0%
TCATATCATGTGCACCAAAC+GGG - chr7_1:614849-614868 None:intergenic 40.0%
!! TTGTTGTTTGATGCGCCAAA+AGG - chr7_1:615111-615130 None:intergenic 40.0%
CACAAGATAGATAGGAAGAC+AGG - chr7_1:615165-615184 None:intergenic 40.0%
ATGTCAAGTTCAGAAGACGA+AGG + chr7_1:609730-609749 Msa1003460:intron 40.0%
GAGGAGATTGGATTTACCAA+CGG - chr7_1:609802-609821 None:intergenic 40.0%
CTTCATTCCAAAGCAACGAT+CGG + chr7_1:615553-615572 Msa1003460:CDS 40.0%
TTCCAAAGGAAGGAAAGAGA+TGG + chr7_1:610311-610330 Msa1003460:intron 40.0%
ATCCATCTCTTTCCTTCCTT+TGG - chr7_1:610316-610335 None:intergenic 40.0%
TGCCGCAAACTTTGATATTG+CGG + chr7_1:610425-610444 Msa1003460:intron 40.0%
TGCCGCAATATCAAAGTTTG+CGG - chr7_1:610430-610449 None:intergenic 40.0%
CGGCAAAGTATGAGCAATTA+TGG + chr7_1:610445-610464 Msa1003460:intron 40.0%
ATGAGCAATTATGGCAGATG+CGG + chr7_1:610454-610473 Msa1003460:intron 40.0%
CGCTGCAAACTTTGATATTG+CGG + chr7_1:610691-610710 Msa1003460:intron 40.0%
AGCACCAATTACAACCACAT+TGG - chr7_1:610744-610763 None:intergenic 40.0%
! CACAAATATGTAGGGAGTAC+AGG - chr7_1:610882-610901 None:intergenic 40.0%
AGGTCTAGTTATGTTCCTAG+CGG - chr7_1:610977-610996 None:intergenic 40.0%
!! AGAGATGTGAGCATTGAAGA+AGG + chr7_1:611342-611361 Msa1003460:intron 40.0%
TGAAGAAGGCAAAAGTCTTG+CGG + chr7_1:611356-611375 Msa1003460:intron 40.0%
AAAAGTCTTGCGGAATCAGA+AGG + chr7_1:611366-611385 Msa1003460:intron 40.0%
TTTCATGGAAACCTCTGCTT+TGG + chr7_1:611395-611414 Msa1003460:intron 40.0%
ATTTGTAGAGTCCAAAGCAG+AGG - chr7_1:611409-611428 None:intergenic 40.0%
!! TGTGAAGACAGCTTTTGAGA+TGG + chr7_1:611428-611447 Msa1003460:intron 40.0%
AGGCTGAATTATCTGTCAAC+AGG + chr7_1:611508-611527 Msa1003460:intron 40.0%
GGCTGAATTATCTGTCAACA+GGG + chr7_1:611509-611528 Msa1003460:intron 40.0%
!! AGGGTCAGTCTTGTTAACAA+TGG + chr7_1:611528-611547 Msa1003460:intron 40.0%
TCTACATCCAAGCAAAGCAA+AGG + chr7_1:611555-611574 Msa1003460:intron 40.0%
!!! GGGTTGGCTTTTTTTTTGCA+TGG + chr7_1:617262-617281 Msa1003460:three_prime_UTR 40.0%
GAAGTGAACAACAACCTGGA+CGG - chr7_1:609699-609718 None:intergenic 45.0%
TCAAGTTCAGAAGACGAAGG+AGG + chr7_1:609733-609752 Msa1003460:intron 45.0%
GAGATTGGATTTACCAACGG+CGG - chr7_1:609799-609818 None:intergenic 45.0%
CTGCTTATTATCGTGGTGTG+TGG + chr7_1:609969-609988 Msa1003460:intron 45.0%
!!! ACTTTTGATAGCGTTGGTCG+TGG + chr7_1:610033-610052 Msa1003460:intron 45.0%
TCACTAGTACACTGTAAGGG+TGG + chr7_1:610569-610588 Msa1003460:intron 45.0%
! AATTGCATTGACCTCCTCTG+AGG + chr7_1:610801-610820 Msa1003460:intron 45.0%
TTAATGAGACACCTCAGAGG+AGG - chr7_1:610815-610834 None:intergenic 45.0%
CACTTAATGAGACACCTCAG+AGG - chr7_1:610818-610837 None:intergenic 45.0%
GTGTCAGATAGAGACGTAAC+AGG - chr7_1:610919-610938 None:intergenic 45.0%
TGCAGCTCATTGTGATACGA+CGG + chr7_1:611275-611294 Msa1003460:intron 45.0%
GGTGGGAAACAAGTGTGATT+TGG + chr7_1:611311-611330 Msa1003460:intron 45.0%
CCTTGTAAGTGTCTGAGTTG+AGG - chr7_1:611491-611510 None:intergenic 45.0%
CCTCAACTCAGACACTTACA+AGG + chr7_1:611488-611507 Msa1003460:intron 45.0%
AGAATCCCGACAAACAGATG+CGG - chr7_1:611885-611904 None:intergenic 45.0%
AGGTAACAAGAAGGAGATGG+AGG - chr7_1:611912-611931 None:intergenic 45.0%
CGAAGGTAACAAGAAGGAGA+TGG - chr7_1:611915-611934 None:intergenic 45.0%
GGGTAACGAAGGTAACAAGA+AGG - chr7_1:611921-611940 None:intergenic 45.0%
AGGAACAAAGCACGACTGTA+GGG + chr7_1:611968-611987 Msa1003460:intron 45.0%
GCCTCTTAAGCTTATTAGGC+CGG + chr7_1:612135-612154 Msa1003460:intron 45.0%
! ACGCTTTTAAACAGGCTAGC+AGG + chr7_1:612453-612472 Msa1003460:intron 45.0%
AGGTCTTGCAAAGCCTAACT+CGG + chr7_1:612576-612595 Msa1003460:intron 45.0%
TGTAGGGATAGGAATAGGCT+AGG - chr7_1:612602-612621 None:intergenic 45.0%
AGTCGTGTAGGGATAGGAAT+AGG - chr7_1:612607-612626 None:intergenic 45.0%
! CATGATGTCTAGCCTTCACT+TGG - chr7_1:612752-612771 None:intergenic 45.0%
CAAGTGAAGGCTAGACATCA+TGG + chr7_1:612750-612769 Msa1003460:intron 45.0%
TTGAGTAAGTTAACTGCGCG+AGG + chr7_1:612932-612951 Msa1003460:intron 45.0%
! GTCATTGATTGGATCTGCAC+TGG + chr7_1:613187-613206 Msa1003460:intron 45.0%
TGACCCTAAATCACCCTCTT+TGG + chr7_1:613414-613433 Msa1003460:intron 45.0%
CCACCAAAGAGGGTGATTTA+GGG - chr7_1:613420-613439 None:intergenic 45.0%
TCCACCAAAGAGGGTGATTT+AGG - chr7_1:613421-613440 None:intergenic 45.0%
TCTCCTTCATCCACCAAAGA+GGG - chr7_1:613430-613449 None:intergenic 45.0%
TTCTCCTTCATCCACCAAAG+AGG - chr7_1:613431-613450 None:intergenic 45.0%
CATAACCCTTTGGTTACGAG+TGG - chr7_1:613984-614003 None:intergenic 45.0%
CTGATGTCCTCATGAGCATA+GGG - chr7_1:614222-614241 None:intergenic 45.0%
ACTGATGTCCTCATGAGCAT+AGG - chr7_1:614223-614242 None:intergenic 45.0%
ATGCATAATATATGCGGGGG+TGG - chr7_1:614423-614442 None:intergenic 45.0%
!! AAACGGGCTCTAAGTGTCTT+AGG - chr7_1:614833-614852 None:intergenic 45.0%
TAAGACACTTAGAGCCCGTT+TGG + chr7_1:614832-614851 Msa1003460:intron 45.0%
ACAACAAGCTGCGATTCAAG+TGG - chr7_1:615393-615412 None:intergenic 45.0%
TCAAGTTCAGAAGACGAAGG+AGG + chr7_1:609733-609752 Msa1003460:intron 45.0%
GAGATTGGATTTACCAACGG+CGG - chr7_1:609799-609818 None:intergenic 45.0%
TTCAACTCCGATCGTTGCTT+TGG - chr7_1:615563-615582 None:intergenic 45.0%
!! GCTTATTATCGTGGTGCTGT+TGG + chr7_1:615676-615695 Msa1003460:CDS 45.0%
!!! CTTTTGATAGCGTTGGTCGT+TGG + chr7_1:610034-610053 Msa1003460:intron 45.0%
! AGGGTTTGAAATTGAGGTCG+TGG + chr7_1:616024-616043 Msa1003460:intron 45.0%
! TCACTAGTACACTCTAAGGG+TGG + chr7_1:616193-616212 Msa1003460:intron 45.0%
! AATTGCATTGACCTCCTCTG+AGG + chr7_1:610801-610820 Msa1003460:intron 45.0%
GTGTCAGATAGAGACGTAAC+AGG - chr7_1:610919-610938 None:intergenic 45.0%
TGCAGCTCATTGTGATACGA+CGG + chr7_1:611275-611294 Msa1003460:intron 45.0%
GGTGGGAAACAAGTGTGATT+TGG + chr7_1:611311-611330 Msa1003460:intron 45.0%
CCTTGTAAGTGTCTGAGTTG+AGG - chr7_1:611491-611510 None:intergenic 45.0%
CCTCAACTCAGACACTTACA+AGG + chr7_1:611488-611507 Msa1003460:intron 45.0%
!!! AATAAAAAAATATGATTTTA+TGG - chr7_1:612881-612900 None:intergenic 5.0%
!!! ATTTTAAATGTAAAAAAAAT+GGG + chr7_1:614378-614397 Msa1003460:intron 5.0%
AGCGTATCGTGAGAGGAGAT+TGG - chr7_1:609814-609833 None:intergenic 50.0%
! GCTCAGATTTGGGATACTGC+TGG + chr7_1:609920-609939 Msa1003460:intron 50.0%
! ATATGTAGGGAGTACAGGCG+AGG - chr7_1:610877-610896 None:intergenic 50.0%
!! TACATTCAGGTTGTGCCGCT+AGG + chr7_1:610959-610978 Msa1003460:intron 50.0%
AGCTCATTGTGATACGACGG+TGG + chr7_1:611278-611297 Msa1003460:intron 50.0%
GCATCTGTTTGTCGGGATTC+TGG + chr7_1:611884-611903 Msa1003460:intron 50.0%
GAGGAACAAAGCACGACTGT+AGG + chr7_1:611967-611986 Msa1003460:intron 50.0%
ACGACTGTAGGGCTGGAAAT+AGG + chr7_1:611979-611998 Msa1003460:intron 50.0%
TGTAGGGCTGGAAATAGGTC+AGG + chr7_1:611984-612003 Msa1003460:intron 50.0%
AGCTTAAAAGGCCAGGTCAC+AGG + chr7_1:612101-612120 Msa1003460:intron 50.0%
!! TTTTTGAGAGGCCTGTGACC+TGG - chr7_1:612115-612134 None:intergenic 50.0%
GCCGGCCTAATAAGCTTAAG+AGG - chr7_1:612139-612158 None:intergenic 50.0%
! GGCCTTCTGGAAGTCTGATA+CGG - chr7_1:612479-612498 None:intergenic 50.0%
TTCCTATCCCTACACGACTG+TGG + chr7_1:612608-612627 Msa1003460:intron 50.0%
TCCTATCCCTACACGACTGT+GGG + chr7_1:612609-612628 Msa1003460:intron 50.0%
TTCTCCGGTTTAGGGGATCA+AGG - chr7_1:612704-612723 None:intergenic 50.0%
AAGTTAACTGCGCGAGGTCT+AGG + chr7_1:612938-612957 Msa1003460:intron 50.0%
! AGGTTTTCGGATCTGCAACG+TGG + chr7_1:613153-613172 Msa1003460:intron 50.0%
CCCTAAATCACCCTCTTTGG+TGG + chr7_1:613417-613436 Msa1003460:intron 50.0%
! TCACCCTCTTTGGTGGATGA+AGG + chr7_1:613424-613443 Msa1003460:intron 50.0%
TGACGGCTCACAAGAGAGAA+AGG + chr7_1:613467-613486 Msa1003460:intron 50.0%
TTACGGCCACTCGTAACCAA+AGG + chr7_1:613975-613994 Msa1003460:intron 50.0%
TACGGCCACTCGTAACCAAA+GGG + chr7_1:613976-613995 Msa1003460:intron 50.0%
ATGAGCATAGGGTAGGGAGT+AGG - chr7_1:614211-614230 None:intergenic 50.0%
GTCCTCATGAGCATAGGGTA+GGG - chr7_1:614217-614236 None:intergenic 50.0%
TGTCCTCATGAGCATAGGGT+AGG - chr7_1:614218-614237 None:intergenic 50.0%
CATAATATATGCGGGGGTGG+AGG - chr7_1:614420-614439 None:intergenic 50.0%
AGTTCAGAAGACGAAGGAGG+AGG + chr7_1:609736-609755 Msa1003460:intron 50.0%
AGCGTATCGTGAGAGGAGAT+TGG - chr7_1:609814-609833 None:intergenic 50.0%
! GCTCAGATTTGGGATACTGC+TGG + chr7_1:609920-609939 Msa1003460:intron 50.0%
TTAGTGAGACACCTCAGAGG+AGG - chr7_1:616439-616458 None:intergenic 50.0%
CACTTAGTGAGACACCTCAG+AGG - chr7_1:616442-616461 None:intergenic 50.0%
! ATATGTAGGGAGTACAGGCG+AGG - chr7_1:610877-610896 None:intergenic 50.0%
!! TACATTCAGGTTGTGCCGCT+AGG + chr7_1:610959-610978 Msa1003460:intron 50.0%
AGCTCATTGTGATACGACGG+TGG + chr7_1:611278-611297 Msa1003460:intron 50.0%
CGGACAAGCTGCGATTCAAG+TGG - chr7_1:609679-609698 None:intergenic 55.0%
ATAATCGGTGACTCCGCCGT+TGG + chr7_1:609783-609802 Msa1003460:intron 55.0%
TACGACGGTGGCAATGATGC+TGG + chr7_1:611290-611309 Msa1003460:intron 55.0%
ACGGTGGCAATGATGCTGGT+GGG + chr7_1:611294-611313 Msa1003460:intron 55.0%
ATCCCGACAAACAGATGCGG+CGG - chr7_1:611882-611901 None:intergenic 55.0%
ACAAAGCACGACTGTAGGGC+TGG + chr7_1:611972-611991 Msa1003460:intron 55.0%
CCTGTCGTAGGATAGGTCGT+AGG - chr7_1:612024-612043 None:intergenic 55.0%
CCTACGACCTATCCTACGAC+AGG + chr7_1:612021-612040 Msa1003460:intron 55.0%
GGCCGTATCAGACTTCCAGA+AGG + chr7_1:612474-612493 Msa1003460:intron 55.0%
! TAGGTCTGAGTCTGGCCTTC+TGG - chr7_1:612492-612511 None:intergenic 55.0%
GGAATAGGCTAGGCCGAGTT+AGG - chr7_1:612592-612611 None:intergenic 55.0%
CCTATCCCTACACGACTGTG+GGG + chr7_1:612610-612629 Msa1003460:intron 55.0%
CTATCCCTACACGACTGTGG+GGG + chr7_1:612611-612630 Msa1003460:intron 55.0%
AAAGCCCCCACAGTCGTGTA+GGG - chr7_1:612618-612637 None:intergenic 55.0%
GGCACCTTGATCCCCTAAAC+CGG + chr7_1:612697-612716 Msa1003460:intron 55.0%
TCGTCGTCTTCGTGCGATGT+TGG - chr7_1:613299-613318 None:intergenic 55.0%
CTCCCTACCCTATGCTCATG+AGG + chr7_1:614212-614231 Msa1003460:intron 55.0%
ATAATCGGTGACTCCGCCGT+TGG + chr7_1:609783-609802 Msa1003460:intron 55.0%
TACGACGGTGGCAATGATGC+TGG + chr7_1:611290-611309 Msa1003460:intron 55.0%
ACGGTGGCAATGATGCTGGT+GGG + chr7_1:611294-611313 Msa1003460:intron 55.0%
GAATCGCAGCTTGTCCGTCC+AGG + chr7_1:609682-609701 Msa1003460:five_prime_UTR 60.0%
CGTTGCGAGCGTATCGTGAG+AGG - chr7_1:609821-609840 None:intergenic 60.0%
GACGGTGGCAATGATGCTGG+TGG + chr7_1:611293-611312 Msa1003460:intron 60.0%
TCCCGACAAACAGATGCGGC+GGG - chr7_1:611881-611900 None:intergenic 60.0%
GGGCTGGAAATAGGTCAGGC+CGG + chr7_1:611988-612007 Msa1003460:intron 60.0%
AATAGGTCAGGCCGGCCTAC+AGG + chr7_1:611996-612015 Msa1003460:intron 60.0%
ATAGGTCAGGCCGGCCTACA+GGG + chr7_1:611997-612016 Msa1003460:intron 60.0%
GATAGGTCGTAGGCCCCTGT+AGG - chr7_1:612014-612033 None:intergenic 60.0%
GACCTATCCTACGACAGGCC+AGG + chr7_1:612026-612045 Msa1003460:intron 60.0%
GTCTGGTCTGCGCCTGTCAT+AGG - chr7_1:612524-612543 None:intergenic 60.0%
GACAGGCGCAGACCAGACTT+AGG + chr7_1:612526-612545 Msa1003460:intron 60.0%
CCCCACAGTCGTGTAGGGAT+AGG - chr7_1:612613-612632 None:intergenic 60.0%
GAAAGCCCCCACAGTCGTGT+AGG - chr7_1:612619-612638 None:intergenic 60.0%
GGGGGTGGAGGTTCATACCT+CGG - chr7_1:614408-614427 None:intergenic 60.0%
CGTTGCGAGCGTATCGTGAG+AGG - chr7_1:609821-609840 None:intergenic 60.0%
GACGGTGGCAATGATGCTGG+TGG + chr7_1:611293-611312 Msa1003460:intron 60.0%
AAACAGATGCGGCGGGGCTG+GGG - chr7_1:611874-611893 None:intergenic 65.0%
CAAACAGATGCGGCGGGGCT+GGG - chr7_1:611875-611894 None:intergenic 65.0%
ACAAACAGATGCGGCGGGGC+TGG - chr7_1:611876-611895 None:intergenic 65.0%
GCCCCGCCGCATCTGTTTGT+CGG + chr7_1:611876-611895 Msa1003460:intron 65.0%
CCCGACAAACAGATGCGGCG+GGG - chr7_1:611880-611899 None:intergenic 65.0%
CCCCGCCGCATCTGTTTGTC+GGG + chr7_1:611877-611896 Msa1003460:intron 65.0%
TAGGTCAGGCCGGCCTACAG+GGG + chr7_1:611998-612017 Msa1003460:intron 65.0%
GGCCTGGCCTGTCGTAGGAT+AGG - chr7_1:612031-612050 None:intergenic 65.0%
AGTCTGGCCTGGCCTGTCGT+AGG - chr7_1:612036-612055 None:intergenic 65.0%
AACAGATGCGGCGGGGCTGG+GGG - chr7_1:611873-611892 None:intergenic 70.0%
GGTCGTAGGCCCCTGTAGGC+CGG - chr7_1:612010-612029 None:intergenic 70.0%
! GATGCGGCGGGGCTGGGGGT+TGG - chr7_1:611869-611888 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 609558 617574 609558 ID=Msa1003460;Name=Msa1003460
chr7_1 mRNA 609558 617574 609558 ID=Msa1003460-mRNA-1;Parent=Msa1003460;Name=Msa1003460-mRNA-1;_AED=0.21;_eAED=0.21;_QI=174|1|1|1|0.5|0.33|3|352|219
chr7_1 exon 609558 609703 609558 ID=Msa1003460-mRNA-1:exon:158;Parent=Msa1003460-mRNA-1
chr7_1 exon 615405 615772 615405 ID=Msa1003460-mRNA-1:exon:159;Parent=Msa1003460-mRNA-1
chr7_1 exon 616903 617574 616903 ID=Msa1003460-mRNA-1:exon:160;Parent=Msa1003460-mRNA-1
chr7_1 five_prime_UTR 609558 609703 609558 ID=Msa1003460-mRNA-1:five_prime_utr;Parent=Msa1003460-mRNA-1
chr7_1 five_prime_UTR 615405 615432 615405 ID=Msa1003460-mRNA-1:five_prime_utr;Parent=Msa1003460-mRNA-1
chr7_1 CDS 615433 615772 615433 ID=Msa1003460-mRNA-1:cds;Parent=Msa1003460-mRNA-1
chr7_1 CDS 616903 617222 616903 ID=Msa1003460-mRNA-1:cds;Parent=Msa1003460-mRNA-1
chr7_1 three_prime_UTR 617223 617574 617223 ID=Msa1003460-mRNA-1:three_prime_utr;Parent=Msa1003460-mRNA-1
Gene Sequence

>Msa1003460

ATGTCAAGTTCAGAAGACGAAGGAGGAGGAGAAGAATATCTCTTCAAAGTCGTTATAATCGGTGACTCCGCCGTTGGTAAATCCAATCTCCTCTCACGATACGCTCGCAACGAGTTCAATCTTCATTCCAAAGCAACGATCGGAGTTGAATTTCAAACTCAGAGCTTAGAAATTGATTCTAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAACGTTTTCGTGCTGTTACTTCTGCTTATTATCGTGGTGCTGTTGGTGCTCTTATTGTTTATGATATTTCTCGCAGAACTACTTTTGATAGCGTTGGTCGTTGGCTCGATGAACTCAAGACTCATTGTGATACGACGGTGGCAATGATGCTGGTGGGAAACAAGTGTGATTTGGATAATATAAGAGATGTGAGCATTGAAGAAGGCAAAAGTCTTGCGGAATCAGAAGGTTTGTTTTTCATGGAAACCTCTGCTTTGGACTCTACAAATGTGAAGACAGCTTTTGAGATGGTTATTAGAGAGATATACAACAATGTTAGCAGGAAGGTCCTCAACTCAGACACTTACAAGGCTGAATTATCTGTCAACAGGGTCAGTCTTGTTAACAATGGCAACTCTACATCCAAGCAAAGCAAAGGCTATTTTTCTTGCTGTTCCTGA
Protein sequence

>Msa1003460

MSSSEDEGGGEEYLFKVVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQSLEIDSKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLDELKTHCDTTVAMMLVGNKCDLDNIRDVSIEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGNSTSKQSKGYFSCCS*