AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0707390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707390 MtrunA17_Chr8g0389341 98.347 121 2 0 1 121 5 125 1.04e-87 250
Msa0707390 MtrunA17_Chr8g0389351 78.333 120 26 0 2 121 3 122 1.45e-70 207
Msa0707390 MtrunA17_Chr2g0330541 61.667 120 46 0 2 121 98 217 7.03e-52 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707390 AT4G26210.2 73.950 119 31 0 2 120 3 121 5.45e-66 196
Msa0707390 AT4G26210.1 73.950 119 31 0 2 120 3 121 5.45e-66 196
Msa0707390 AT4G29480.1 73.950 119 31 0 2 120 3 121 9.53e-66 195
Msa0707390 AT2G19680.1 73.950 119 31 0 2 120 3 121 2.56e-65 194
Msa0707390 AT2G19680.2 73.950 119 31 0 2 120 3 121 2.56e-65 194

Find 40 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAACATTATGTTGATTT+TGG 0.100120 4_4:-80615187 Msa0707390:three_prime_UTR
TTCCATGCTTAGTTATAAAT+TGG 0.149886 4_4:+80617141 None:intergenic
TTGATTATGTCAAGCAAATA+TGG 0.268577 4_4:-80615404 Msa0707390:CDS
TGAAAGGACTCACAACGATT+TGG 0.345795 4_4:+80615435 None:intergenic
AAAACCATGCATAGCATTCC+AGG 0.362552 4_4:+80615328 None:intergenic
ATGACAGTACTCCTGGCTTT+AGG 0.369756 4_4:+80615210 None:intergenic
TCCATGCTTAGTTATAAATT+GGG 0.411328 4_4:+80617142 None:intergenic
TGCTGGTCAGATTGTTGGAA+GGG 0.436231 4_4:-80615304 Msa0707390:CDS
GAAGAACAAGGAATACATTC+AGG 0.438061 4_4:-80617093 Msa0707390:CDS
GTTATAAATGACAGTACTCC+TGG 0.444865 4_4:+80615203 None:intergenic
TGGCATTTCTCTACTGTAGC+AGG 0.457610 4_4:+80617068 None:intergenic
TTCTTACCACAAGCAGCTGT+TGG 0.459464 4_4:-80617117 Msa0707390:CDS
TTTATAATGTTCGATTTAGC+GGG 0.460232 4_4:-80615242 Msa0707390:three_prime_UTR
GAATGAATAGACGCAGTAAT+CGG 0.467972 4_4:+80617857 None:intergenic
TCGTTGTGAGTCCTTTCATA+AGG 0.471099 4_4:-80615430 Msa0707390:CDS
CTTTATAATGTTCGATTTAG+CGG 0.477701 4_4:-80615243 Msa0707390:three_prime_UTR
AACACACATCACACAATCCT+TGG 0.494909 4_4:-80617920 Msa0707390:five_prime_UTR
TAACCTCTTGTATTTGAAGC+GGG 0.510997 4_4:-80615089 Msa0707390:three_prime_UTR
GTGCTGGTCAGATTGTTGGA+AGG 0.514410 4_4:-80615305 Msa0707390:CDS
GCTGGTCAGATTGTTGGAAG+GGG 0.519250 4_4:-80615303 Msa0707390:CDS
CTGGTCAGATTGTTGGAAGG+GGG 0.522946 4_4:-80615302 Msa0707390:CDS
AGTAGAGAAATGCCAACTTC+TGG 0.523939 4_4:-80617060 Msa0707390:CDS
ATAGTTGCTTGGCCAGAAGT+TGG 0.524773 4_4:+80617048 None:intergenic
TCCCAATTTATAACTAAGCA+TGG 0.525968 4_4:-80617143 Msa0707390:CDS
CTAAATCGAACATTATAAAG+TGG 0.546080 4_4:+80615246 None:intergenic
ATAATCAAGTTCCTTATGAA+AGG 0.546893 4_4:+80615419 None:intergenic
GGCTCTATACTCCTAAAGCC+AGG 0.548608 4_4:-80615221 Msa0707390:three_prime_UTR
GGTTAAAATAAAACCTAGCA+AGG 0.573767 4_4:+80617015 None:intergenic
GTAACCTCTTGTATTTGAAG+CGG 0.579495 4_4:-80615090 Msa0707390:three_prime_UTR
GCGAGTGTAAAATAGTTGCT+TGG 0.582756 4_4:+80617037 None:intergenic
TCTTCTCCAACAGCTGCTTG+TGG 0.584533 4_4:+80617111 None:intergenic
GCAGCGTCGCGAGGTAGCAG+CGG 0.590854 4_4:-80617890 Msa0707390:five_prime_UTR
TTGGCCTGGAATGCTATGCA+TGG 0.593962 4_4:-80615332 Msa0707390:CDS
TTATCATGTTAGAAAGCTAG+CGG 0.599612 4_4:-80615046 Msa0707390:three_prime_UTR
GATTTGAAGATTGAAGATGC+AGG 0.608817 4_4:-80615369 Msa0707390:CDS
GCAGCTGTTGGAGAAGAACA+AGG 0.648148 4_4:-80617105 Msa0707390:CDS
ACTGCGTCTATTCATTCACA+AGG 0.658506 4_4:-80617851 Msa0707390:intron
TATCCCGCTTCAAATACAAG+AGG 0.658735 4_4:+80615086 None:intergenic
TCAAATACAAGAGGTTACTG+AGG 0.675220 4_4:+80615095 None:intergenic
GCGACGCTGCAAAAGCACCA+AGG 0.703860 4_4:+80617903 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATTTATTGAATATTT+AGG - chr4_4:80615277-80615296 Msa0707390:CDS 10.0%
!! GAAAATTTATTGAATATTTA+GGG - chr4_4:80615278-80615297 Msa0707390:CDS 10.0%
!!! GATTTTATAAAATTAACTTA+TGG - chr4_4:80615496-80615515 Msa0707390:intron 10.0%
!! ATATGATTAAAAAAAATTAC+AGG + chr4_4:80617910-80617929 None:intergenic 10.0%
!!! TTTAGGTATTATTTTTTTGT+CGG - chr4_4:80615359-80615378 Msa0707390:CDS 15.0%
!! TAGATTTATTAATAAGGAAA+GGG + chr4_4:80615928-80615947 None:intergenic 15.0%
!! CAGTTTAAAAAAAAAAATTG+AGG + chr4_4:80616444-80616463 None:intergenic 15.0%
!!! TGTTTTATTAAAGAGTTAAA+AGG - chr4_4:80616462-80616481 Msa0707390:intron 15.0%
!!! GTTTTATTAAAGAGTTAAAA+GGG - chr4_4:80616463-80616482 Msa0707390:intron 15.0%
!! TCTTTAATTATTAAGTATGA+TGG - chr4_4:80616613-80616632 Msa0707390:intron 15.0%
!!! TTATAACATTATGTTGATTT+TGG - chr4_4:80617732-80617751 Msa0707390:intron 15.0%
!!! TATAACATTATGTTGATTTT+GGG - chr4_4:80617733-80617752 Msa0707390:intron 15.0%
!! TTCATCTATGAAATAAAGAA+CGG + chr4_4:80615111-80615130 None:intergenic 20.0%
!!! AACTTTGAAGAGATAAAAAT+TGG + chr4_4:80615242-80615261 None:intergenic 20.0%
!!! TGTTTAGATTAGCTAAATTT+AGG - chr4_4:80615342-80615361 Msa0707390:CDS 20.0%
!! CTAGATTTATTAATAAGGAA+AGG + chr4_4:80615929-80615948 None:intergenic 20.0%
!! AAAAATCACTTACAATCAAT+AGG + chr4_4:80615995-80616014 None:intergenic 20.0%
!!! TTTTTTTTGCATTTTGATGT+CGG - chr4_4:80616020-80616039 Msa0707390:intron 20.0%
!! AATAGAAACAAACTAAAAGT+AGG + chr4_4:80616548-80616567 None:intergenic 20.0%
!! TAGAAAAATACACGAAATTA+TGG + chr4_4:80616642-80616661 None:intergenic 20.0%
!! TATACAGTATAAAAGATGAT+CGG - chr4_4:80616800-80616819 Msa0707390:intron 20.0%
! TTGAAGAGATAAAAATTGGT+CGG + chr4_4:80615238-80615257 None:intergenic 25.0%
! TGAACAATTATAATTCGTGT+TGG - chr4_4:80615420-80615439 Msa0707390:CDS 25.0%
! AAAGTAACAACAATGCATAA+TGG - chr4_4:80615571-80615590 Msa0707390:intron 25.0%
!! TTTAAAGTGACTTATCAGTT+AGG - chr4_4:80615633-80615652 Msa0707390:intron 25.0%
! CAAAAGACAAATGTACAATA+AGG + chr4_4:80615711-80615730 None:intergenic 25.0%
! TCCATGCTTAGTTATAAATT+GGG + chr4_4:80615780-80615799 None:intergenic 25.0%
! TTCCATGCTTAGTTATAAAT+TGG + chr4_4:80615781-80615800 None:intergenic 25.0%
! TCCTTATTAATAAATCTAGC+TGG - chr4_4:80615930-80615949 Msa0707390:intron 25.0%
! TCCAGCTAGATTTATTAATA+AGG + chr4_4:80615934-80615953 None:intergenic 25.0%
! GATTGAACAATCAACATATT+AGG + chr4_4:80616125-80616144 None:intergenic 25.0%
!!! GTTTTGTTGTTTTGTACTTT+AGG - chr4_4:80616589-80616608 Msa0707390:intron 25.0%
!! ATATACCACTATAGCATTTT+AGG - chr4_4:80616727-80616746 Msa0707390:intron 25.0%
!! TATACCACTATAGCATTTTA+GGG - chr4_4:80616728-80616747 Msa0707390:intron 25.0%
! ATACAGTATAAAAGATGATC+GGG - chr4_4:80616801-80616820 Msa0707390:intron 25.0%
! TTGTACTAAATAGCTTATTG+TGG + chr4_4:80616958-80616977 None:intergenic 25.0%
! ATAGCTAAAAGAAGAAACTA+CGG + chr4_4:80617379-80617398 None:intergenic 25.0%
! ATAATCAAGTTCCTTATGAA+AGG + chr4_4:80617503-80617522 None:intergenic 25.0%
! TTGATTATGTCAAGCAAATA+TGG - chr4_4:80617515-80617534 Msa0707390:intron 25.0%
! CTAAATCGAACATTATAAAG+TGG + chr4_4:80617676-80617695 None:intergenic 25.0%
! CTTTATAATGTTCGATTTAG+CGG - chr4_4:80617676-80617695 Msa0707390:intron 25.0%
! TTTATAATGTTCGATTTAGC+GGG - chr4_4:80617677-80617696 Msa0707390:intron 25.0%
ATGAAATAAAGAACGGAAGA+AGG + chr4_4:80615104-80615123 None:intergenic 30.0%
!!! CTATTGTTACTCTCGTTTTT+TGG - chr4_4:80615155-80615174 Msa0707390:three_prime_UTR 30.0%
!!! TCTCTTCAAAGTTTTGTTGT+TGG - chr4_4:80615249-80615268 Msa0707390:three_prime_UTR 30.0%
! TGCATTTAGAACCCAAATTT+AGG - chr4_4:80615310-80615329 Msa0707390:CDS 30.0%
CATGCTAGAAACCTAAATTT+GGG + chr4_4:80615324-80615343 None:intergenic 30.0%
ACATGCTAGAAACCTAAATT+TGG + chr4_4:80615325-80615344 None:intergenic 30.0%
TTCAAGAGTGAAACTCAAAT+TGG + chr4_4:80615404-80615423 None:intergenic 30.0%
GCATTCTATAGTATATCTTG+AGG - chr4_4:80615593-80615612 Msa0707390:intron 30.0%
TCCCAATTTATAACTAAGCA+TGG - chr4_4:80615776-80615795 Msa0707390:intron 30.0%
GGTTAAAATAAAACCTAGCA+AGG + chr4_4:80615907-80615926 None:intergenic 30.0%
TCGCTAATATATGTACTTGT+TGG - chr4_4:80615969-80615988 Msa0707390:intron 30.0%
! TTTTCTCCCTTGTCAATAAA+GGG + chr4_4:80616073-80616092 None:intergenic 30.0%
! ATTTTCTCCCTTGTCAATAA+AGG + chr4_4:80616074-80616093 None:intergenic 30.0%
ACCATTAACTTTGTAGTTCA+GGG + chr4_4:80616166-80616185 None:intergenic 30.0%
TATAGTGGTATATCGAATAG+CGG + chr4_4:80616720-80616739 None:intergenic 30.0%
! ATACCACTATAGCATTTTAG+GGG - chr4_4:80616729-80616748 Msa0707390:intron 30.0%
TAAGACTTCATTGCTAAGAA+AGG + chr4_4:80616849-80616868 None:intergenic 30.0%
GTGAACTCTAAACTAACTAA+GGG + chr4_4:80616891-80616910 None:intergenic 30.0%
TGTGAACTCTAAACTAACTA+AGG + chr4_4:80616892-80616911 None:intergenic 30.0%
TTGTACTAAATAGCGTATTG+CGG + chr4_4:80617074-80617093 None:intergenic 30.0%
TACAAAATACTGTGCAATAG+TGG - chr4_4:80617089-80617108 Msa0707390:CDS 30.0%
TGTTGAATTGAAACATCAGA+AGG - chr4_4:80617274-80617293 Msa0707390:intron 30.0%
TGTTGAATTGAAACATCAGA+TGG - chr4_4:80617274-80617293 Msa0707390:intron 30.0%
! ATTTGTCATTCTTTTCTGTG+AGG - chr4_4:80617769-80617788 Msa0707390:intron 30.0%
! TCTTTTCTGTGAGGAAAAAA+AGG - chr4_4:80617778-80617797 Msa0707390:intron 30.0%
AAAAAAGGTTGAGAAACTAG+TGG - chr4_4:80617793-80617812 Msa0707390:intron 30.0%
TTATCATGTTAGAAAGCTAG+CGG - chr4_4:80617873-80617892 Msa0707390:five_prime_UTR 30.0%
GAATGAATAGACGCAGTAAT+CGG + chr4_4:80615065-80615084 None:intergenic 35.0%
AAATAAAGAACGGAAGAAGG+AGG + chr4_4:80615101-80615120 None:intergenic 35.0%
GAGAGAAATCAGATCTTAAG+AGG + chr4_4:80615184-80615203 None:intergenic 35.0%
!!! GGTATTATTTTTTTGTCGGC+TGG - chr4_4:80615363-80615382 Msa0707390:CDS 35.0%
AAGTGACTTATCAGTTAGGA+CGG - chr4_4:80615637-80615656 Msa0707390:intron 35.0%
TTAGGACGGAAGGAATAATA+TGG - chr4_4:80615651-80615670 Msa0707390:intron 35.0%
ACGGAAGGAATAATATGGAT+GGG - chr4_4:80615656-80615675 Msa0707390:intron 35.0%
CAAATGTACAATAAGGTGCA+AGG + chr4_4:80615704-80615723 None:intergenic 35.0%
GAAGAACAAGGAATACATTC+AGG - chr4_4:80615826-80615845 Msa0707390:intron 35.0%
CCATTAACTTTGTAGTTCAG+GGG + chr4_4:80616165-80616184 None:intergenic 35.0%
GACCATTAACTTTGTAGTTC+AGG + chr4_4:80616167-80616186 None:intergenic 35.0%
AGCCAATTACAGTGAATTTG+CGG - chr4_4:80616372-80616391 Msa0707390:intron 35.0%
ATAGTGGTATATCGAATAGC+GGG + chr4_4:80616719-80616738 None:intergenic 35.0%
AATCCCCTAAAATGCTATAG+TGG + chr4_4:80616735-80616754 None:intergenic 35.0%
!! ACTATAGCATTTTAGGGGAT+TGG - chr4_4:80616734-80616753 Msa0707390:intron 35.0%
CACTGTGAACTCTAAACTAA+GGG + chr4_4:80616895-80616914 None:intergenic 35.0%
ACACTGTGAACTCTAAACTA+AGG + chr4_4:80616896-80616915 None:intergenic 35.0%
AATATGACACTGTTGCATAG+TGG - chr4_4:80617122-80617141 Msa0707390:CDS 35.0%
TGTTGGATATCATAGAGTTC+AGG - chr4_4:80617200-80617219 Msa0707390:intron 35.0%
ATCACATGAACCCTAATTCA+TGG + chr4_4:80617226-80617245 None:intergenic 35.0%
TATTGATCAGAATTCCCATG+TGG - chr4_4:80617335-80617354 Msa0707390:intron 35.0%
GATTTGAAGATTGAAGATGC+AGG - chr4_4:80617550-80617569 Msa0707390:intron 35.0%
GTTATAAATGACAGTACTCC+TGG + chr4_4:80617719-80617738 None:intergenic 35.0%
TCAAATACAAGAGGTTACTG+AGG + chr4_4:80617827-80617846 None:intergenic 35.0%
GTAACCTCTTGTATTTGAAG+CGG - chr4_4:80617829-80617848 Msa0707390:intron 35.0%
! TAACCTCTTGTATTTGAAGC+GGG - chr4_4:80617830-80617849 Msa0707390:intron 35.0%
AACACACATCACACAATCCT+TGG - chr4_4:80614999-80615018 Msa0707390:three_prime_UTR 40.0%
ACTGCGTCTATTCATTCACA+AGG - chr4_4:80615068-80615087 Msa0707390:three_prime_UTR 40.0%
GACGGAAGGAATAATATGGA+TGG - chr4_4:80615655-80615674 Msa0707390:intron 40.0%
CGGAAGGAATAATATGGATG+GGG - chr4_4:80615657-80615676 Msa0707390:intron 40.0%
AGTAGAGAAATGCCAACTTC+TGG - chr4_4:80615859-80615878 Msa0707390:intron 40.0%
GCGAGTGTAAAATAGTTGCT+TGG + chr4_4:80615885-80615904 None:intergenic 40.0%
! TATTTTACACTCGCCTTGCT+AGG - chr4_4:80615891-80615910 Msa0707390:intron 40.0%
TTGTCAATAAAGGGAGGGAA+GGG + chr4_4:80616064-80616083 None:intergenic 40.0%
TTCCCTCCCTTTATTGACAA+GGG - chr4_4:80616064-80616083 Msa0707390:intron 40.0%
ATTGACAAGGGAGAAAATCC+TGG - chr4_4:80616076-80616095 Msa0707390:intron 40.0%
CCCCTGAACTACAAAGTTAA+TGG - chr4_4:80616162-80616181 Msa0707390:intron 40.0%
TTGTCAATAGCGTGCTATAG+CGG - chr4_4:80616263-80616282 Msa0707390:intron 40.0%
! TATTGCTGACTGTGGTTTGT+GGG + chr4_4:80616338-80616357 None:intergenic 40.0%
TGATATCCAACACTGAACAC+AGG + chr4_4:80617192-80617211 None:intergenic 40.0%
TAGAGTTCAGGCCATGAATT+AGG - chr4_4:80617212-80617231 Msa0707390:intron 40.0%
AGAGTTCAGGCCATGAATTA+GGG - chr4_4:80617213-80617232 Msa0707390:intron 40.0%
TGAAAGGACTCACAACGATT+TGG + chr4_4:80617487-80617506 None:intergenic 40.0%
TCGTTGTGAGTCCTTTCATA+AGG - chr4_4:80617489-80617508 Msa0707390:intron 40.0%
!!! GCAGGTATTGCTGTTTTGTT+TGG - chr4_4:80617568-80617587 Msa0707390:intron 40.0%
!!! TATTGCTGTTTTGTTTGGCC+TGG - chr4_4:80617573-80617592 Msa0707390:intron 40.0%
AAAACCATGCATAGCATTCC+AGG + chr4_4:80617594-80617613 None:intergenic 40.0%
!! TTTTGTGCTGGTCAGATTGT+TGG - chr4_4:80617610-80617629 Msa0707390:intron 40.0%
TATCCCGCTTCAAATACAAG+AGG + chr4_4:80617836-80617855 None:intergenic 40.0%
GACTTATCAGTTAGGACGGA+AGG - chr4_4:80615641-80615660 Msa0707390:intron 45.0%
TTCTTACCACAAGCAGCTGT+TGG - chr4_4:80615802-80615821 Msa0707390:intron 45.0%
TGGCATTTCTCTACTGTAGC+AGG + chr4_4:80615854-80615873 None:intergenic 45.0%
ATAGTTGCTTGGCCAGAAGT+TGG + chr4_4:80615874-80615893 None:intergenic 45.0%
CTTGTCAATAAAGGGAGGGA+AGG + chr4_4:80616065-80616084 None:intergenic 45.0%
CTTCCCTCCCTTTATTGACA+AGG - chr4_4:80616063-80616082 Msa0707390:intron 45.0%
CTCCCTTGTCAATAAAGGGA+GGG + chr4_4:80616069-80616088 None:intergenic 45.0%
TCTCCCTTGTCAATAAAGGG+AGG + chr4_4:80616070-80616089 None:intergenic 45.0%
ACAAGGGAGAAAATCCTGGA+GGG - chr4_4:80616080-80616099 Msa0707390:intron 45.0%
! ATAGCGGAATAACGTATCCG+TGG - chr4_4:80616279-80616298 Msa0707390:intron 45.0%
AACGTATCCGTGGTAGGATT+TGG - chr4_4:80616289-80616308 Msa0707390:intron 45.0%
ATCCGTGGTAGGATTTGGAA+CGG - chr4_4:80616294-80616313 Msa0707390:intron 45.0%
! CTATTGCTGACTGTGGTTTG+TGG + chr4_4:80616339-80616358 None:intergenic 45.0%
CAAACCACAGTCAGCAATAG+TGG - chr4_4:80616339-80616358 Msa0707390:intron 45.0%
GGCCGCAAATTCACTGTAAT+TGG + chr4_4:80616377-80616396 None:intergenic 45.0%
AGCAGACACGATAGCAGTTT+GGG + chr4_4:80616399-80616418 None:intergenic 45.0%
TAGCAGACACGATAGCAGTT+TGG + chr4_4:80616400-80616419 None:intergenic 45.0%
CTGTGCAATAGTGGCTATAG+CGG - chr4_4:80617098-80617117 Msa0707390:CDS 45.0%
AACACAGGTGTAGTCAACTG+TGG + chr4_4:80617177-80617196 None:intergenic 45.0%
ACTACACCTGTGTTCAGTGT+TGG - chr4_4:80617183-80617202 Msa0707390:CDS 45.0%
!! TCCCATGTGGTGCTTTTTAG+AGG - chr4_4:80617348-80617367 Msa0707390:intron 45.0%
!! GCCTCTAAAAAGCACCACAT+GGG + chr4_4:80617352-80617371 None:intergenic 45.0%
!! TGCCTCTAAAAAGCACCACA+TGG + chr4_4:80617353-80617372 None:intergenic 45.0%
!!! TGCTATGCATGGTTTTGTGC+TGG - chr4_4:80617598-80617617 Msa0707390:intron 45.0%
TGCTGGTCAGATTGTTGGAA+GGG - chr4_4:80617615-80617634 Msa0707390:intron 45.0%
! ATGACAGTACTCCTGGCTTT+AGG + chr4_4:80617712-80617731 None:intergenic 45.0%
!!! AAATGTAATTAATTTTAAAA+AGG - chr4_4:80615463-80615482 Msa0707390:intron 5.0%
TCTTCTCCAACAGCTGCTTG+TGG + chr4_4:80615811-80615830 None:intergenic 50.0%
GCAGCTGTTGGAGAAGAACA+AGG - chr4_4:80615814-80615833 Msa0707390:intron 50.0%
GACAAGGGAGAAAATCCTGG+AGG - chr4_4:80616079-80616098 Msa0707390:intron 50.0%
AACTTGAAACCTCACCCTCC+AGG + chr4_4:80616097-80616116 None:intergenic 50.0%
CGGAATAACGTATCCGTGGT+AGG - chr4_4:80616283-80616302 Msa0707390:intron 50.0%
GTCCGTTCCAAATCCTACCA+CGG + chr4_4:80616299-80616318 None:intergenic 50.0%
ACCACAGTCAGCAATAGTGG+TGG - chr4_4:80616342-80616361 Msa0707390:intron 50.0%
! ACCACCACTATTGCTGACTG+TGG + chr4_4:80616346-80616365 None:intergenic 50.0%
GCAGACACGATAGCAGTTTG+GGG + chr4_4:80616398-80616417 None:intergenic 50.0%
CTGCTATCGTGTCTGCTAGT+AGG - chr4_4:80616402-80616421 Msa0707390:intron 50.0%
! GGGATTGGTGCATGCTATCT+GGG - chr4_4:80616749-80616768 Msa0707390:intron 50.0%
AAGATGATCGGGTGATCGTG+TGG - chr4_4:80616812-80616831 Msa0707390:intron 50.0%
TTGGCCTGGAATGCTATGCA+TGG - chr4_4:80617587-80617606 Msa0707390:intron 50.0%
! GTGCTGGTCAGATTGTTGGA+AGG - chr4_4:80617614-80617633 Msa0707390:intron 50.0%
GCTGGTCAGATTGTTGGAAG+GGG - chr4_4:80617616-80617635 Msa0707390:intron 50.0%
CTGGTCAGATTGTTGGAAGG+GGG - chr4_4:80617617-80617636 Msa0707390:intron 50.0%
GGAAGGGGGTTTACTTTCAC+AGG - chr4_4:80617631-80617650 Msa0707390:intron 50.0%
GGCTCTATACTCCTAAAGCC+AGG - chr4_4:80617698-80617717 Msa0707390:intron 50.0%
GGAGAAAATCCTGGAGGGTG+AGG - chr4_4:80616085-80616104 Msa0707390:intron 55.0%
! AGGATTTGGAACGGACCGCA+CGG - chr4_4:80616303-80616322 Msa0707390:intron 55.0%
! GGGGATTGGTGCATGCTATC+TGG - chr4_4:80616748-80616767 Msa0707390:intron 55.0%
!! GCGACGCTGCAAAAGCACCA+AGG + chr4_4:80615019-80615038 None:intergenic 60.0%
! AACGGACCGCACGGTGCTTT+TGG - chr4_4:80616312-80616331 Msa0707390:intron 60.0%
!! TGTGGGCCAAAAGCACCGTG+CGG + chr4_4:80616321-80616340 None:intergenic 60.0%
! GGTGCTTTTGCAGCGTCGCG+AGG - chr4_4:80615020-80615039 Msa0707390:three_prime_UTR 65.0%
GCAGCGTCGCGAGGTAGCAG+CGG - chr4_4:80615029-80615048 Msa0707390:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 80614953 80617988 80614953 ID=Msa0707390;Name=Msa0707390
chr4_4 mRNA 80614953 80617988 80614953 ID=Msa0707390-mRNA-1;Parent=Msa0707390;Name=Msa0707390-mRNA-1;_AED=0.14;_eAED=0.14;_QI=137|1|1|1|1|1|3|322|121
chr4_4 exon 80614953 80615461 80614953 ID=Msa0707390-mRNA-1:exon:26306;Parent=Msa0707390-mRNA-1
chr4_4 exon 80617029 80617207 80617029 ID=Msa0707390-mRNA-1:exon:26305;Parent=Msa0707390-mRNA-1
chr4_4 exon 80617852 80617988 80617852 ID=Msa0707390-mRNA-1:exon:26304;Parent=Msa0707390-mRNA-1
chr4_4 five_prime_UTR 80617852 80617988 80617852 ID=Msa0707390-mRNA-1:five_prime_utr;Parent=Msa0707390-mRNA-1
chr4_4 CDS 80617029 80617207 80617029 ID=Msa0707390-mRNA-1:cds;Parent=Msa0707390-mRNA-1
chr4_4 CDS 80615275 80615461 80615275 ID=Msa0707390-mRNA-1:cds;Parent=Msa0707390-mRNA-1
chr4_4 three_prime_UTR 80614953 80615274 80614953 ID=Msa0707390-mRNA-1:three_prime_utr;Parent=Msa0707390-mRNA-1
Gene Sequence

>Msa0707390

ATGTCGAAGTTGCAGCAGTTGACATCAAAAGCGTGTCAAGCGTCCCAATTTATAACTAAGCATGGAACTTCTTACCACAAGCAGCTGTTGGAGAAGAACAAGGAATACATTCAGGATCCTGCTACAGTAGAGAAATGCCAACTTCTGGCCAAGCAACTATTTTACACTCGCCTTGCTAGTATTCCAAATCGTTGTGAGTCCTTTCATAAGGAACTTGATTATGTCAAGCAAATATGGAAGAATAAGCAAGATTTGAAGATTGAAGATGCAGGTATTGCTGTTTTGTTTGGCCTGGAATGCTATGCATGGTTTTGTGCTGGTCAGATTGTTGGAAGGGGGTTTACTTTCACAGGATACTATGTCTGA

Protein sequence

>Msa0707390

MSKLQQLTSKACQASQFITKHGTSYHKQLLEKNKEYIQDPATVEKCQLLAKQLFYTRLASIPNRCESFHKELDYVKQIWKNKQDLKIEDAGIAVLFGLECYAWFCAGQIVGRGFTFTGYYV*