Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004870 | XP_013447818.1 | 85.045 | 448 | 41 | 4 | 1 | 430 | 1 | 440 | 0.0 | 752 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004870 | sp|Q54I39|IST1L_DICDI | 32.967 | 182 | 113 | 5 | 1 | 179 | 1 | 176 | 6.06e-15 | 79.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004870 | A0A072TVN0 | 85.045 | 448 | 41 | 4 | 1 | 430 | 1 | 440 | 0.0 | 752 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1004830 | Msa1004870 | 0.803563 | 3.284641e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004870 | MtrunA17_Chr7g0214961 | 85.045 | 448 | 41 | 4 | 1 | 430 | 1 | 440 | 0.0 | 752 |
| Msa1004870 | MtrunA17_Chr1g0210081 | 42.029 | 207 | 111 | 4 | 2 | 204 | 7 | 208 | 1.33e-44 | 159 |
| Msa1004870 | MtrunA17_Chr1g0209771 | 38.150 | 173 | 101 | 2 | 8 | 178 | 13 | 181 | 3.62e-33 | 127 |
| Msa1004870 | MtrunA17_Chr8g0370931 | 38.372 | 172 | 103 | 2 | 1 | 169 | 19 | 190 | 7.73e-33 | 128 |
| Msa1004870 | MtrunA17_Chr6g0487991 | 33.906 | 233 | 132 | 8 | 3 | 220 | 1 | 226 | 1.18e-29 | 122 |
| Msa1004870 | MtrunA17_Chr6g0464791 | 37.195 | 164 | 101 | 1 | 10 | 171 | 15 | 178 | 3.17e-28 | 117 |
| Msa1004870 | MtrunA17_Chr2g0324121 | 33.136 | 169 | 111 | 1 | 3 | 169 | 5 | 173 | 1.30e-23 | 103 |
| Msa1004870 | MtrunA17_Chr4g0042021 | 30.055 | 183 | 120 | 4 | 6 | 185 | 4 | 181 | 8.07e-17 | 81.6 |
| Msa1004870 | MtrunA17_Chr8g0390551 | 27.461 | 193 | 127 | 3 | 2 | 192 | 4 | 185 | 3.63e-16 | 80.9 |
| Msa1004870 | MtrunA17_Chr2g0331801 | 27.647 | 170 | 112 | 2 | 2 | 169 | 4 | 164 | 2.84e-14 | 74.3 |
| Msa1004870 | MtrunA17_Chr4g0004491 | 26.012 | 173 | 114 | 4 | 3 | 172 | 8 | 169 | 5.52e-13 | 69.7 |
| Msa1004870 | MtrunA17_Chr6g0485461 | 27.273 | 209 | 138 | 4 | 2 | 208 | 60 | 256 | 9.67e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004870 | AT1G13340.1 | 43.850 | 187 | 102 | 2 | 3 | 186 | 8 | 194 | 9.70e-45 | 160 |
| Msa1004870 | AT1G25420.1 | 36.464 | 181 | 111 | 2 | 8 | 186 | 13 | 191 | 2.75e-30 | 119 |
| Msa1004870 | AT4G35730.1 | 32.500 | 200 | 132 | 2 | 1 | 197 | 19 | 218 | 1.71e-29 | 120 |
| Msa1004870 | AT1G34220.2 | 29.670 | 273 | 155 | 6 | 3 | 238 | 7 | 279 | 3.03e-29 | 120 |
| Msa1004870 | AT1G25420.4 | 35.976 | 164 | 101 | 2 | 25 | 186 | 3 | 164 | 2.57e-26 | 108 |
| Msa1004870 | AT2G19710.1 | 35.802 | 162 | 102 | 1 | 10 | 169 | 12 | 173 | 2.35e-25 | 109 |
| Msa1004870 | AT1G34220.1 | 26.733 | 303 | 155 | 7 | 3 | 238 | 7 | 309 | 5.45e-24 | 105 |
| Msa1004870 | AT1G25420.3 | 38.710 | 124 | 74 | 1 | 63 | 186 | 2 | 123 | 4.67e-23 | 98.2 |
| Msa1004870 | AT1G25420.2 | 38.710 | 124 | 74 | 1 | 63 | 186 | 2 | 123 | 4.67e-23 | 98.2 |
| Msa1004870 | AT4G29440.1 | 33.918 | 171 | 110 | 2 | 3 | 170 | 4 | 174 | 4.02e-22 | 100 |
| Msa1004870 | AT2G14830.1 | 28.652 | 178 | 125 | 1 | 3 | 178 | 5 | 182 | 4.40e-20 | 92.0 |
| Msa1004870 | AT4G29440.2 | 35.338 | 133 | 84 | 1 | 40 | 170 | 14 | 146 | 1.30e-18 | 89.4 |
| Msa1004870 | AT1G79910.1 | 25.946 | 185 | 123 | 3 | 2 | 181 | 4 | 179 | 4.31e-17 | 82.8 |
| Msa1004870 | AT4G32350.1 | 27.168 | 173 | 115 | 2 | 2 | 172 | 4 | 167 | 2.91e-14 | 75.5 |
| Msa1004870 | AT4G32350.3 | 27.168 | 173 | 115 | 2 | 2 | 172 | 4 | 167 | 2.91e-14 | 75.5 |
| Msa1004870 | AT1G52315.1 | 27.879 | 165 | 107 | 3 | 8 | 169 | 10 | 165 | 2.48e-13 | 71.2 |
| Msa1004870 | AT3G15490.1 | 30.952 | 126 | 82 | 3 | 40 | 160 | 8 | 133 | 9.41e-12 | 64.7 |
Find 44 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTACTTCAATTATATT+TGG | 0.212451 | 7_1:+2534503 | None:intergenic |
| TAACATCACTTGCAATTTCT+AGG | 0.220844 | 7_1:-2535927 | Msa1004870:CDS |
| AAGAAAATTGCTACTGATAT+TGG | 0.234595 | 7_1:-2535013 | Msa1004870:CDS |
| GTGTTATCATATCATCCTTT+AGG | 0.277902 | 7_1:+2534162 | None:intergenic |
| GCAACATGCTTGATAAATTA+AGG | 0.324625 | 7_1:-2534079 | Msa1004870:CDS |
| CTTCTTCACAAGCTATTAGA+TGG | 0.341236 | 7_1:-2533965 | Msa1004870:CDS |
| TATGGTCTACTTGTAACATT+TGG | 0.365257 | 7_1:+2533924 | None:intergenic |
| TCAATAATATAATTTCTGTT+TGG | 0.387848 | 7_1:+2534260 | None:intergenic |
| TATTCATTAGTGTGCTCATC+TGG | 0.396376 | 7_1:+2533839 | None:intergenic |
| GAGAAAATTATGGGTCTCAT+TGG | 0.403464 | 7_1:-2535979 | None:intergenic |
| TGCAGCTGTTCTACAAGCTT+TGG | 0.404714 | 7_1:-2534342 | Msa1004870:CDS |
| GCATACACATCATCAACATT+TGG | 0.405313 | 7_1:-2533886 | Msa1004870:CDS |
| CATCTAATAGCTTGTGAAGA+AGG | 0.419163 | 7_1:+2533966 | None:intergenic |
| AAATAATGGAGTGAACTCTA+AGG | 0.428762 | 7_1:-2535186 | Msa1004870:intron |
| ACTTCAATTATATTTGGCTT+AGG | 0.429822 | 7_1:+2534509 | None:intergenic |
| TCTTGTATCTTGTGCAACTC+TGG | 0.442407 | 7_1:+2535266 | None:intergenic |
| CACATCATCAACATTTGGAT+TGG | 0.446646 | 7_1:-2533881 | Msa1004870:CDS |
| GTTGCTTCCTTGAGCTCAAA+GGG | 0.448608 | 7_1:+2535329 | None:intergenic |
| CATGTTGGATGCATTTGATA+TGG | 0.449780 | 7_1:-2535674 | Msa1004870:CDS |
| ACCCCACAATGGAAATCAAA+AGG | 0.484451 | 7_1:-2535045 | Msa1004870:CDS |
| GTTTCTCAACTCTTGAAGCT+TGG | 0.489320 | 7_1:-2535850 | Msa1004870:CDS |
| TTGATGTGAATGAGGAAAGA+AGG | 0.497239 | 7_1:-2534382 | Msa1004870:CDS |
| ATACTCCAATCATATGCAAA+AGG | 0.499232 | 7_1:-2534294 | Msa1004870:CDS |
| GCCTTATCTTTGCATCCTCA+AGG | 0.511294 | 7_1:-2535301 | Msa1004870:CDS |
| TTTATCAACAGGTTGAGCAT+TGG | 0.513161 | 7_1:-2535711 | Msa1004870:intron |
| TGCAACAAATATAGTTTCCA+AGG | 0.516218 | 7_1:-2534132 | Msa1004870:CDS |
| ACATTTGGTTGAGACCTTTG+TGG | 0.516970 | 7_1:+2533939 | None:intergenic |
| ACAATTAAGTCAAAACCTAA+AGG | 0.532444 | 7_1:-2534177 | Msa1004870:CDS |
| TGCTTGCACGAACAAGAGCT+TGG | 0.532606 | 7_1:+2535818 | None:intergenic |
| GAATCTATTTGATGTGAATG+AGG | 0.532729 | 7_1:-2534390 | Msa1004870:CDS |
| GGAGTGTCCCTTTGAGCTCA+AGG | 0.542762 | 7_1:-2535336 | Msa1004870:CDS |
| TCATGATCAAAATGTAATTG+AGG | 0.546813 | 7_1:-2534417 | Msa1004870:CDS |
| ATCTAATAGCTTGTGAAGAA+GGG | 0.549788 | 7_1:+2533967 | None:intergenic |
| TGTTGCTTCCTTGAGCTCAA+AGG | 0.550119 | 7_1:+2535328 | None:intergenic |
| ATCTTTGCATCCTCAAGGTG+TGG | 0.556366 | 7_1:-2535296 | Msa1004870:CDS |
| TGGAAATTCTCCACACCTTG+AGG | 0.556562 | 7_1:+2535286 | None:intergenic |
| GATTGTAGAACAAAACATGT+TGG | 0.571196 | 7_1:-2535689 | Msa1004870:CDS |
| CACGAACAAGAGCTTGGTCA+TGG | 0.574954 | 7_1:+2535824 | None:intergenic |
| ACCTTGAGGATGCAAAGATA+AGG | 0.578188 | 7_1:+2535300 | None:intergenic |
| TATTTGGCTTAGGAACATGT+TGG | 0.596043 | 7_1:+2534519 | None:intergenic |
| ATGTGAATGAGGAAAGAAGG+AGG | 0.624805 | 7_1:-2534379 | Msa1004870:CDS |
| TTCATCAAAACACCCCACAA+TGG | 0.631056 | 7_1:-2535056 | Msa1004870:CDS |
| CTATTAGATGGAATCCACAA+AGG | 0.687305 | 7_1:-2533953 | Msa1004870:CDS |
| ATTGGAAGATGATGTCAGTG+AGG | 0.788704 | 7_1:-2533863 | Msa1004870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAAATAAAAGAGAA+AGG | + | chr7_1:2534061-2534080 | None:intergenic | 10.0% |
| !! | TTAGTTATTATTTCAAAAAT+AGG | - | chr7_1:2534466-2534485 | Msa1004870:CDS | 10.0% |
| !! | TAGTTATTATTTCAAAAATA+GGG | - | chr7_1:2534467-2534486 | Msa1004870:CDS | 10.0% |
| !! | ATTAAATTGCATAAAAATAA+TGG | - | chr7_1:2534624-2534643 | Msa1004870:intron | 10.0% |
| !!! | AAAAAATTAGAATATTTTGA+TGG | + | chr7_1:2534712-2534731 | None:intergenic | 10.0% |
| !!! | AATAATTTAGCTTTATTTTA+TGG | + | chr7_1:2534969-2534988 | None:intergenic | 10.0% |
| !! | AATTATTAAATAAAAGAGAA+AGG | + | chr7_1:2534061-2534080 | None:intergenic | 10.0% |
| !! | TTAGTTATTATTTCAAAAAT+AGG | - | chr7_1:2534466-2534485 | Msa1004870:CDS | 10.0% |
| !! | TAGTTATTATTTCAAAAATA+GGG | - | chr7_1:2534467-2534486 | Msa1004870:CDS | 10.0% |
| !! | ATTAAATTGCATAAAAATAA+TGG | - | chr7_1:2534624-2534643 | Msa1004870:intron | 10.0% |
| !!! | AAAAAATTAGAATATTTTGA+TGG | + | chr7_1:2534712-2534731 | None:intergenic | 10.0% |
| !!! | AATAATTTAGCTTTATTTTA+TGG | + | chr7_1:2534969-2534988 | None:intergenic | 10.0% |
| !!! | TGATGTTAAATTTTTCAATT+TGG | + | chr7_1:2533885-2533904 | None:intergenic | 15.0% |
| !! | TATATTGTTTATTTATCAAC+AGG | - | chr7_1:2534102-2534121 | Msa1004870:CDS | 15.0% |
| !! | TTAGAAAAATTCATCAAATT+TGG | + | chr7_1:2534407-2534426 | None:intergenic | 15.0% |
| !!! | AGATTTTGACTTTAAAATTT+GGG | - | chr7_1:2534580-2534599 | Msa1004870:CDS | 15.0% |
| !! | ATATATATGTATATTATTGC+AGG | - | chr7_1:2535197-2535216 | Msa1004870:CDS | 15.0% |
| !! | TCAATAATATAATTTCTGTT+TGG | + | chr7_1:2535567-2535586 | None:intergenic | 15.0% |
| !!! | TGATGTTAAATTTTTCAATT+TGG | + | chr7_1:2533885-2533904 | None:intergenic | 15.0% |
| !! | TATATTGTTTATTTATCAAC+AGG | - | chr7_1:2534102-2534121 | Msa1004870:CDS | 15.0% |
| !! | TTAGAAAAATTCATCAAATT+TGG | + | chr7_1:2534407-2534426 | None:intergenic | 15.0% |
| !!! | AGATTTTGACTTTAAAATTT+GGG | - | chr7_1:2534580-2534599 | Msa1004870:CDS | 15.0% |
| !! | ATATATATGTATATTATTGC+AGG | - | chr7_1:2535197-2535216 | Msa1004870:CDS | 15.0% |
| !! | TCAATAATATAATTTCTGTT+TGG | + | chr7_1:2535567-2535586 | None:intergenic | 15.0% |
| !!! | GAGATTTTGACTTTAAAATT+TGG | - | chr7_1:2534579-2534598 | Msa1004870:CDS | 20.0% |
| !!! | TCTAAGGTATAAATTTTATG+AGG | - | chr7_1:2534654-2534673 | Msa1004870:intron | 20.0% |
| !! | GTATACTCTTGAAATAAATA+AGG | + | chr7_1:2534680-2534699 | None:intergenic | 20.0% |
| !! | GATAAGCTGAAAATAATTTA+TGG | - | chr7_1:2535042-2535061 | Msa1004870:CDS | 20.0% |
| !! | TATTAGAACATATTTCACTA+TGG | + | chr7_1:2535178-2535197 | None:intergenic | 20.0% |
| !! | GTTTCTACTTCAATTATATT+TGG | + | chr7_1:2535324-2535343 | None:intergenic | 20.0% |
| !! | AAATCAAAAAACATTATGCA+TGG | - | chr7_1:2535613-2535632 | Msa1004870:intron | 20.0% |
| !!! | GAGATTTTGACTTTAAAATT+TGG | - | chr7_1:2534579-2534598 | Msa1004870:CDS | 20.0% |
| !!! | TCTAAGGTATAAATTTTATG+AGG | - | chr7_1:2534654-2534673 | Msa1004870:intron | 20.0% |
| !! | GTATACTCTTGAAATAAATA+AGG | + | chr7_1:2534680-2534699 | None:intergenic | 20.0% |
| !! | GATAAGCTGAAAATAATTTA+TGG | - | chr7_1:2535042-2535061 | Msa1004870:CDS | 20.0% |
| !! | TATTAGAACATATTTCACTA+TGG | + | chr7_1:2535178-2535197 | None:intergenic | 20.0% |
| !! | GTTTCTACTTCAATTATATT+TGG | + | chr7_1:2535324-2535343 | None:intergenic | 20.0% |
| !! | AAATCAAAAAACATTATGCA+TGG | - | chr7_1:2535613-2535632 | Msa1004870:intron | 20.0% |
| ! | AAGAAAATTGCTACTGATAT+TGG | - | chr7_1:2534811-2534830 | Msa1004870:intron | 25.0% |
| !! | TTTCTACTTCATTTTGTCTT+TGG | + | chr7_1:2535239-2535258 | None:intergenic | 25.0% |
| ! | AATGAAGTAGAAACCAAAAA+TGG | - | chr7_1:2535246-2535265 | Msa1004870:CDS | 25.0% |
| !! | ACTTCAATTATATTTGGCTT+AGG | + | chr7_1:2535318-2535337 | None:intergenic | 25.0% |
| !! | TTCAGCACTACTATAATTTT+TGG | + | chr7_1:2535346-2535365 | None:intergenic | 25.0% |
| ! | TCATGATCAAAATGTAATTG+AGG | - | chr7_1:2535407-2535426 | Msa1004870:intron | 25.0% |
| ! | GATCTTAGAGAAAAATTTGA+AGG | - | chr7_1:2535585-2535604 | Msa1004870:intron | 25.0% |
| ! | ACAATTAAGTCAAAACCTAA+AGG | - | chr7_1:2535647-2535666 | Msa1004870:CDS | 25.0% |
| ! | AAGAAAATTGCTACTGATAT+TGG | - | chr7_1:2534811-2534830 | Msa1004870:intron | 25.0% |
| !! | TTTCTACTTCATTTTGTCTT+TGG | + | chr7_1:2535239-2535258 | None:intergenic | 25.0% |
| ! | AATGAAGTAGAAACCAAAAA+TGG | - | chr7_1:2535246-2535265 | Msa1004870:CDS | 25.0% |
| !! | ACTTCAATTATATTTGGCTT+AGG | + | chr7_1:2535318-2535337 | None:intergenic | 25.0% |
| !! | TTCAGCACTACTATAATTTT+TGG | + | chr7_1:2535346-2535365 | None:intergenic | 25.0% |
| ! | TCATGATCAAAATGTAATTG+AGG | - | chr7_1:2535407-2535426 | Msa1004870:intron | 25.0% |
| ! | GATCTTAGAGAAAAATTTGA+AGG | - | chr7_1:2535585-2535604 | Msa1004870:intron | 25.0% |
| ! | ACAATTAAGTCAAAACCTAA+AGG | - | chr7_1:2535647-2535666 | Msa1004870:CDS | 25.0% |
| TAACATCACTTGCAATTTCT+AGG | - | chr7_1:2533897-2533916 | Msa1004870:CDS | 30.0% | |
| GATTGTAGAACAAAACATGT+TGG | - | chr7_1:2534135-2534154 | Msa1004870:CDS | 30.0% | |
| ! | AAATAATGGAGTGAACTCTA+AGG | - | chr7_1:2534638-2534657 | Msa1004870:intron | 30.0% |
| !!! | TTCCTTTTGATTTCCATTGT+GGG | + | chr7_1:2534784-2534803 | None:intergenic | 30.0% |
| !!! | ATTCCTTTTGATTTCCATTG+TGG | + | chr7_1:2534785-2534804 | None:intergenic | 30.0% |
| ! | GTACCTTATTTGTCAATGTA+GGG | + | chr7_1:2534861-2534880 | None:intergenic | 30.0% |
| ! | AGTACCTTATTTGTCAATGT+AGG | + | chr7_1:2534862-2534881 | None:intergenic | 30.0% |
| GTTGTTTACATAAGCTATCA+TGG | - | chr7_1:2535007-2535026 | Msa1004870:intron | 30.0% | |
| ! | ATCAACACTACTACCATTTT+TGG | + | chr7_1:2535262-2535281 | None:intergenic | 30.0% |
| !! | CATTTTGATCATGATCATGT+TGG | + | chr7_1:2535401-2535420 | None:intergenic | 30.0% |
| GAATCTATTTGATGTGAATG+AGG | - | chr7_1:2535434-2535453 | Msa1004870:intron | 30.0% | |
| ATACTCCAATCATATGCAAA+AGG | - | chr7_1:2535530-2535549 | Msa1004870:intron | 30.0% | |
| ! | TACATCCTTTTGCATATGAT+TGG | + | chr7_1:2535538-2535557 | None:intergenic | 30.0% |
| CAAAAAACATTATGCATGGA+AGG | - | chr7_1:2535617-2535636 | Msa1004870:intron | 30.0% | |
| GTGTTATCATATCATCCTTT+AGG | + | chr7_1:2535665-2535684 | None:intergenic | 30.0% | |
| TGCAACAAATATAGTTTCCA+AGG | - | chr7_1:2535692-2535711 | Msa1004870:CDS | 30.0% | |
| GCAACATGCTTGATAAATTA+AGG | - | chr7_1:2535745-2535764 | Msa1004870:intron | 30.0% | |
| ! | ATCTAATAGCTTGTGAAGAA+GGG | + | chr7_1:2535860-2535879 | None:intergenic | 30.0% |
| TATGGTCTACTTGTAACATT+TGG | + | chr7_1:2535903-2535922 | None:intergenic | 30.0% | |
| ! | TGCATTTTCCTTGGAAAATA+TGG | + | chr7_1:2535921-2535940 | None:intergenic | 30.0% |
| TAACATCACTTGCAATTTCT+AGG | - | chr7_1:2533897-2533916 | Msa1004870:CDS | 30.0% | |
| GATTGTAGAACAAAACATGT+TGG | - | chr7_1:2534135-2534154 | Msa1004870:CDS | 30.0% | |
| ! | AAATAATGGAGTGAACTCTA+AGG | - | chr7_1:2534638-2534657 | Msa1004870:intron | 30.0% |
| !!! | TTCCTTTTGATTTCCATTGT+GGG | + | chr7_1:2534784-2534803 | None:intergenic | 30.0% |
| !!! | ATTCCTTTTGATTTCCATTG+TGG | + | chr7_1:2534785-2534804 | None:intergenic | 30.0% |
| ! | GTACCTTATTTGTCAATGTA+GGG | + | chr7_1:2534861-2534880 | None:intergenic | 30.0% |
| ! | AGTACCTTATTTGTCAATGT+AGG | + | chr7_1:2534862-2534881 | None:intergenic | 30.0% |
| GTTGTTTACATAAGCTATCA+TGG | - | chr7_1:2535007-2535026 | Msa1004870:intron | 30.0% | |
| ! | ATCAACACTACTACCATTTT+TGG | + | chr7_1:2535262-2535281 | None:intergenic | 30.0% |
| !! | CATTTTGATCATGATCATGT+TGG | + | chr7_1:2535401-2535420 | None:intergenic | 30.0% |
| GAATCTATTTGATGTGAATG+AGG | - | chr7_1:2535434-2535453 | Msa1004870:intron | 30.0% | |
| ATACTCCAATCATATGCAAA+AGG | - | chr7_1:2535530-2535549 | Msa1004870:intron | 30.0% | |
| ! | TACATCCTTTTGCATATGAT+TGG | + | chr7_1:2535538-2535557 | None:intergenic | 30.0% |
| CAAAAAACATTATGCATGGA+AGG | - | chr7_1:2535617-2535636 | Msa1004870:intron | 30.0% | |
| GTGTTATCATATCATCCTTT+AGG | + | chr7_1:2535665-2535684 | None:intergenic | 30.0% | |
| TGCAACAAATATAGTTTCCA+AGG | - | chr7_1:2535692-2535711 | Msa1004870:CDS | 30.0% | |
| GCAACATGCTTGATAAATTA+AGG | - | chr7_1:2535745-2535764 | Msa1004870:intron | 30.0% | |
| ! | ATCTAATAGCTTGTGAAGAA+GGG | + | chr7_1:2535860-2535879 | None:intergenic | 30.0% |
| TATGGTCTACTTGTAACATT+TGG | + | chr7_1:2535903-2535922 | None:intergenic | 30.0% | |
| ! | TGCATTTTCCTTGGAAAATA+TGG | + | chr7_1:2535921-2535940 | None:intergenic | 30.0% |
| ! | TTTATCAACAGGTTGAGCAT+TGG | - | chr7_1:2534113-2534132 | Msa1004870:CDS | 35.0% |
| CATGTTGGATGCATTTGATA+TGG | - | chr7_1:2534150-2534169 | Msa1004870:CDS | 35.0% | |
| ! | GTACTTGAGCTCTTTCTTTT+AGG | + | chr7_1:2534195-2534214 | None:intergenic | 35.0% |
| !!! | TCCTTTTGATTTCCATTGTG+GGG | + | chr7_1:2534783-2534802 | None:intergenic | 35.0% |
| !! | AGTTACTTTGCCTTTTGAGA+AGG | - | chr7_1:2534834-2534853 | Msa1004870:intron | 35.0% |
| TGAGCTTAATAAGTCACATG+AGG | + | chr7_1:2535106-2535125 | None:intergenic | 35.0% | |
| ! | TATTTGGCTTAGGAACATGT+TGG | + | chr7_1:2535308-2535327 | None:intergenic | 35.0% |
| TTGATGTGAATGAGGAAAGA+AGG | - | chr7_1:2535442-2535461 | Msa1004870:intron | 35.0% | |
| AGTTTCCAAGGAAAAAGTGA+AGG | - | chr7_1:2535704-2535723 | Msa1004870:intron | 35.0% | |
| !!! | ATTCTCCTTCACTTTTTCCT+TGG | + | chr7_1:2535712-2535731 | None:intergenic | 35.0% |
| ! | CATCTAATAGCTTGTGAAGA+AGG | + | chr7_1:2535861-2535880 | None:intergenic | 35.0% |
| CTTCTTCACAAGCTATTAGA+TGG | - | chr7_1:2535859-2535878 | Msa1004870:CDS | 35.0% | |
| CTATTAGATGGAATCCACAA+AGG | - | chr7_1:2535871-2535890 | Msa1004870:CDS | 35.0% | |
| ! | CAAGTAGACCATATTTTCCA+AGG | - | chr7_1:2535910-2535929 | Msa1004870:CDS | 35.0% |
| ! | TGATGTGTATGCATTTTCCT+TGG | + | chr7_1:2535930-2535949 | None:intergenic | 35.0% |
| GCATACACATCATCAACATT+TGG | - | chr7_1:2535938-2535957 | Msa1004870:CDS | 35.0% | |
| CACATCATCAACATTTGGAT+TGG | - | chr7_1:2535943-2535962 | Msa1004870:CDS | 35.0% | |
| ! | TTTATCAACAGGTTGAGCAT+TGG | - | chr7_1:2534113-2534132 | Msa1004870:CDS | 35.0% |
| CATGTTGGATGCATTTGATA+TGG | - | chr7_1:2534150-2534169 | Msa1004870:CDS | 35.0% | |
| ! | GTACTTGAGCTCTTTCTTTT+AGG | + | chr7_1:2534195-2534214 | None:intergenic | 35.0% |
| !!! | TCCTTTTGATTTCCATTGTG+GGG | + | chr7_1:2534783-2534802 | None:intergenic | 35.0% |
| !! | AGTTACTTTGCCTTTTGAGA+AGG | - | chr7_1:2534834-2534853 | Msa1004870:intron | 35.0% |
| TGAGCTTAATAAGTCACATG+AGG | + | chr7_1:2535106-2535125 | None:intergenic | 35.0% | |
| ! | TATTTGGCTTAGGAACATGT+TGG | + | chr7_1:2535308-2535327 | None:intergenic | 35.0% |
| TTGATGTGAATGAGGAAAGA+AGG | - | chr7_1:2535442-2535461 | Msa1004870:intron | 35.0% | |
| AGTTTCCAAGGAAAAAGTGA+AGG | - | chr7_1:2535704-2535723 | Msa1004870:intron | 35.0% | |
| !!! | ATTCTCCTTCACTTTTTCCT+TGG | + | chr7_1:2535712-2535731 | None:intergenic | 35.0% |
| ! | CATCTAATAGCTTGTGAAGA+AGG | + | chr7_1:2535861-2535880 | None:intergenic | 35.0% |
| CTTCTTCACAAGCTATTAGA+TGG | - | chr7_1:2535859-2535878 | Msa1004870:CDS | 35.0% | |
| CTATTAGATGGAATCCACAA+AGG | - | chr7_1:2535871-2535890 | Msa1004870:CDS | 35.0% | |
| ! | CAAGTAGACCATATTTTCCA+AGG | - | chr7_1:2535910-2535929 | Msa1004870:CDS | 35.0% |
| ! | TGATGTGTATGCATTTTCCT+TGG | + | chr7_1:2535930-2535949 | None:intergenic | 35.0% |
| GCATACACATCATCAACATT+TGG | - | chr7_1:2535938-2535957 | Msa1004870:CDS | 35.0% | |
| CACATCATCAACATTTGGAT+TGG | - | chr7_1:2535943-2535962 | Msa1004870:CDS | 35.0% | |
| GTTTCTCAACTCTTGAAGCT+TGG | - | chr7_1:2533974-2533993 | Msa1004870:CDS | 40.0% | |
| ACCTTGAGGATGCAAAGATA+AGG | + | chr7_1:2534527-2534546 | None:intergenic | 40.0% | |
| TCTTGTATCTTGTGCAACTC+TGG | + | chr7_1:2534561-2534580 | None:intergenic | 40.0% | |
| TTCATCAAAACACCCCACAA+TGG | - | chr7_1:2534768-2534787 | Msa1004870:intron | 40.0% | |
| ACCCCACAATGGAAATCAAA+AGG | - | chr7_1:2534779-2534798 | Msa1004870:intron | 40.0% | |
| AATGTAGGGTCCTTCTCAAA+AGG | + | chr7_1:2534847-2534866 | None:intergenic | 40.0% | |
| GGACCCTACATTGACAAATA+AGG | - | chr7_1:2534855-2534874 | Msa1004870:intron | 40.0% | |
| ATGTGAATGAGGAAAGAAGG+AGG | - | chr7_1:2535445-2535464 | Msa1004870:intron | 40.0% | |
| ACATTTGGTTGAGACCTTTG+TGG | + | chr7_1:2535888-2535907 | None:intergenic | 40.0% | |
| ATTGGAAGATGATGTCAGTG+AGG | - | chr7_1:2535961-2535980 | Msa1004870:CDS | 40.0% | |
| GTTTCTCAACTCTTGAAGCT+TGG | - | chr7_1:2533974-2533993 | Msa1004870:CDS | 40.0% | |
| ACCTTGAGGATGCAAAGATA+AGG | + | chr7_1:2534527-2534546 | None:intergenic | 40.0% | |
| TCTTGTATCTTGTGCAACTC+TGG | + | chr7_1:2534561-2534580 | None:intergenic | 40.0% | |
| TTCATCAAAACACCCCACAA+TGG | - | chr7_1:2534768-2534787 | Msa1004870:intron | 40.0% | |
| ACCCCACAATGGAAATCAAA+AGG | - | chr7_1:2534779-2534798 | Msa1004870:intron | 40.0% | |
| AATGTAGGGTCCTTCTCAAA+AGG | + | chr7_1:2534847-2534866 | None:intergenic | 40.0% | |
| GGACCCTACATTGACAAATA+AGG | - | chr7_1:2534855-2534874 | Msa1004870:intron | 40.0% | |
| ATGTGAATGAGGAAAGAAGG+AGG | - | chr7_1:2535445-2535464 | Msa1004870:intron | 40.0% | |
| ACATTTGGTTGAGACCTTTG+TGG | + | chr7_1:2535888-2535907 | None:intergenic | 40.0% | |
| ATTGGAAGATGATGTCAGTG+AGG | - | chr7_1:2535961-2535980 | Msa1004870:CDS | 40.0% | |
| GTTGCTTCCTTGAGCTCAAA+GGG | + | chr7_1:2534498-2534517 | None:intergenic | 45.0% | |
| ! | TGTTGCTTCCTTGAGCTCAA+AGG | + | chr7_1:2534499-2534518 | None:intergenic | 45.0% |
| GCCTTATCTTTGCATCCTCA+AGG | - | chr7_1:2534523-2534542 | Msa1004870:CDS | 45.0% | |
| ATCTTTGCATCCTCAAGGTG+TGG | - | chr7_1:2534528-2534547 | Msa1004870:CDS | 45.0% | |
| TGGAAATTCTCCACACCTTG+AGG | + | chr7_1:2534541-2534560 | None:intergenic | 45.0% | |
| TGCAGCTGTTCTACAAGCTT+TGG | - | chr7_1:2535482-2535501 | Msa1004870:intron | 45.0% | |
| GTTGCTTCCTTGAGCTCAAA+GGG | + | chr7_1:2534498-2534517 | None:intergenic | 45.0% | |
| ! | TGTTGCTTCCTTGAGCTCAA+AGG | + | chr7_1:2534499-2534518 | None:intergenic | 45.0% |
| GCCTTATCTTTGCATCCTCA+AGG | - | chr7_1:2534523-2534542 | Msa1004870:CDS | 45.0% | |
| ATCTTTGCATCCTCAAGGTG+TGG | - | chr7_1:2534528-2534547 | Msa1004870:CDS | 45.0% | |
| TGGAAATTCTCCACACCTTG+AGG | + | chr7_1:2534541-2534560 | None:intergenic | 45.0% | |
| TGCAGCTGTTCTACAAGCTT+TGG | - | chr7_1:2535482-2535501 | Msa1004870:intron | 45.0% | |
| !!! | ATTAAAATAAAAAATAGTTT+TGG | + | chr7_1:2534032-2534051 | None:intergenic | 5.0% |
| !! | AATTAGTAAATTAATTAAAA+TGG | + | chr7_1:2534447-2534466 | None:intergenic | 5.0% |
| !!! | ATTAAAATAAAAAATAGTTT+TGG | + | chr7_1:2534032-2534051 | None:intergenic | 5.0% |
| !! | AATTAGTAAATTAATTAAAA+TGG | + | chr7_1:2534447-2534466 | None:intergenic | 5.0% |
| CACGAACAAGAGCTTGGTCA+TGG | + | chr7_1:2534003-2534022 | None:intergenic | 50.0% | |
| TGCTTGCACGAACAAGAGCT+TGG | + | chr7_1:2534009-2534028 | None:intergenic | 50.0% | |
| CACGAACAAGAGCTTGGTCA+TGG | + | chr7_1:2534003-2534022 | None:intergenic | 50.0% | |
| TGCTTGCACGAACAAGAGCT+TGG | + | chr7_1:2534009-2534028 | None:intergenic | 50.0% | |
| ! | GGAGTGTCCCTTTGAGCTCA+AGG | - | chr7_1:2534488-2534507 | Msa1004870:CDS | 55.0% |
| ! | GGAGTGTCCCTTTGAGCTCA+AGG | - | chr7_1:2534488-2534507 | Msa1004870:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 2533854 | 2535992 | 2533854 | ID=Msa1004870;Name=Msa1004870 |
| chr7_1 | mRNA | 2533854 | 2535992 | 2533854 | ID=Msa1004870-mRNA-1;Parent=Msa1004870;Name=Msa1004870-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|430 |
| chr7_1 | exon | 2535831 | 2535992 | 2535831 | ID=Msa1004870-mRNA-1:exon:1054;Parent=Msa1004870-mRNA-1 |
| chr7_1 | exon | 2535619 | 2535722 | 2535619 | ID=Msa1004870-mRNA-1:exon:1053;Parent=Msa1004870-mRNA-1 |
| chr7_1 | exon | 2535187 | 2535358 | 2535187 | ID=Msa1004870-mRNA-1:exon:1052;Parent=Msa1004870-mRNA-1 |
| chr7_1 | exon | 2535012 | 2535092 | 2535012 | ID=Msa1004870-mRNA-1:exon:1051;Parent=Msa1004870-mRNA-1 |
| chr7_1 | exon | 2533854 | 2534627 | 2533854 | ID=Msa1004870-mRNA-1:exon:1050;Parent=Msa1004870-mRNA-1 |
| chr7_1 | CDS | 2535831 | 2535992 | 2535831 | ID=Msa1004870-mRNA-1:cds;Parent=Msa1004870-mRNA-1 |
| chr7_1 | CDS | 2535619 | 2535722 | 2535619 | ID=Msa1004870-mRNA-1:cds;Parent=Msa1004870-mRNA-1 |
| chr7_1 | CDS | 2535187 | 2535358 | 2535187 | ID=Msa1004870-mRNA-1:cds;Parent=Msa1004870-mRNA-1 |
| chr7_1 | CDS | 2535012 | 2535092 | 2535012 | ID=Msa1004870-mRNA-1:cds;Parent=Msa1004870-mRNA-1 |
| chr7_1 | CDS | 2533854 | 2534627 | 2533854 | ID=Msa1004870-mRNA-1:cds;Parent=Msa1004870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
