Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004830 | XP_013447818.1 | 72.158 | 431 | 39 | 5 | 1 | 358 | 1 | 423 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004830 | A0A072TVN0 | 72.158 | 431 | 39 | 5 | 1 | 358 | 1 | 423 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1004830 | Msa1004870 | 0.803563 | 3.284641e-49 | -8.615850e-47 |
| Msa1004830 | Msa1004930 | 0.808008 | 3.824139e-50 | -8.615850e-47 |
| Msa1004830 | Msa1047130 | 0.835969 | 1.231060e-56 | -8.615850e-47 |
| Msa1004830 | Msa1091360 | 0.831997 | 1.214994e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004830 | MtrunA17_Chr7g0214961 | 72.158 | 431 | 39 | 5 | 1 | 358 | 1 | 423 | 0.0 | 580 |
| Msa1004830 | MtrunA17_Chr1g0210081 | 41.089 | 202 | 93 | 4 | 2 | 177 | 7 | 208 | 7.72e-41 | 147 |
| Msa1004830 | MtrunA17_Chr8g0370931 | 35.593 | 177 | 94 | 2 | 1 | 157 | 19 | 195 | 5.75e-27 | 110 |
| Msa1004830 | MtrunA17_Chr1g0209771 | 35.976 | 164 | 86 | 1 | 8 | 152 | 13 | 176 | 7.23e-26 | 106 |
| Msa1004830 | MtrunA17_Chr6g0464791 | 34.756 | 164 | 88 | 1 | 10 | 154 | 15 | 178 | 2.43e-22 | 98.6 |
| Msa1004830 | MtrunA17_Chr6g0487991 | 31.765 | 170 | 96 | 2 | 3 | 152 | 1 | 170 | 4.07e-22 | 98.6 |
| Msa1004830 | MtrunA17_Chr2g0324121 | 32.544 | 169 | 95 | 1 | 3 | 152 | 5 | 173 | 1.62e-20 | 93.2 |
| Msa1004830 | MtrunA17_Chr8g0390551 | 26.286 | 175 | 101 | 2 | 2 | 157 | 4 | 169 | 8.09e-13 | 69.7 |
| Msa1004830 | MtrunA17_Chr2g0331801 | 27.011 | 174 | 99 | 3 | 2 | 148 | 4 | 176 | 1.76e-11 | 65.5 |
| Msa1004830 | MtrunA17_Chr4g0004491 | 25.143 | 175 | 100 | 4 | 3 | 157 | 8 | 171 | 8.28e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004830 | AT1G13340.1 | 41.935 | 186 | 88 | 2 | 3 | 168 | 8 | 193 | 6.85e-39 | 144 |
| Msa1004830 | AT4G35730.1 | 33.333 | 177 | 98 | 2 | 1 | 157 | 19 | 195 | 7.57e-24 | 102 |
| Msa1004830 | AT1G34220.2 | 33.529 | 170 | 93 | 2 | 3 | 152 | 7 | 176 | 4.51e-23 | 101 |
| Msa1004830 | AT1G25420.1 | 33.133 | 166 | 92 | 1 | 8 | 154 | 13 | 178 | 1.21e-22 | 97.8 |
| Msa1004830 | AT2G19710.1 | 31.481 | 162 | 92 | 1 | 10 | 152 | 12 | 173 | 8.10e-19 | 89.0 |
| Msa1004830 | AT1G25420.4 | 31.788 | 151 | 84 | 1 | 23 | 154 | 1 | 151 | 1.14e-18 | 85.9 |
| Msa1004830 | AT2G14830.1 | 28.977 | 176 | 106 | 1 | 3 | 159 | 5 | 180 | 2.62e-18 | 85.9 |
| Msa1004830 | AT1G34220.1 | 32.653 | 147 | 79 | 2 | 3 | 129 | 7 | 153 | 1.08e-17 | 85.1 |
| Msa1004830 | AT4G29440.1 | 30.114 | 176 | 103 | 2 | 3 | 158 | 4 | 179 | 2.53e-16 | 81.3 |
| Msa1004830 | AT1G25420.3 | 41.463 | 82 | 48 | 0 | 73 | 154 | 29 | 110 | 5.31e-14 | 71.6 |
| Msa1004830 | AT1G25420.2 | 41.463 | 82 | 48 | 0 | 73 | 154 | 29 | 110 | 5.31e-14 | 71.6 |
| Msa1004830 | AT4G29440.2 | 30.435 | 138 | 77 | 1 | 40 | 158 | 14 | 151 | 1.09e-12 | 70.1 |
| Msa1004830 | AT1G79910.1 | 23.429 | 175 | 106 | 2 | 2 | 157 | 4 | 169 | 6.24e-11 | 63.9 |
Find 58 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAATTATGGGTCTTAT+TGG | 0.200751 | 7_1:-2496388 | None:intergenic |
| GTTTCTACTTCAATTATATT+TGG | 0.212451 | 7_1:+2494946 | None:intergenic |
| TAACATCACTTGCAATTTCT+AGG | 0.220844 | 7_1:-2496336 | Msa1004830:CDS |
| AAGAAAATTGCTACTGATAT+TGG | 0.234595 | 7_1:-2495455 | Msa1004830:CDS |
| GTGTTATCATATCATCCTTT+AGG | 0.277902 | 7_1:+2494606 | None:intergenic |
| GCAACATGCTTGATAAATTA+AGG | 0.324625 | 7_1:-2494523 | Msa1004830:CDS |
| GGACTTGCCAATGGGGCTTT+CGG | 0.331535 | 7_1:-2493260 | Msa1004830:CDS |
| GTGGCACATATCCCTATTCC+TGG | 0.332062 | 7_1:+2493212 | None:intergenic |
| CTTCTTCACAAGCTATTAGA+TGG | 0.341236 | 7_1:-2494409 | Msa1004830:CDS |
| GGACCCTACATTGACAAATA+AGG | 0.387677 | 7_1:-2495411 | Msa1004830:intron |
| GTGCGGGTGGACTTGCCAAT+GGG | 0.389989 | 7_1:-2493268 | Msa1004830:CDS |
| TGCAGCTGTTCTACAAGCTT+TGG | 0.404714 | 7_1:-2494785 | Msa1004830:CDS |
| AAATAATGAAGTGAACTCTA+AGG | 0.413519 | 7_1:-2495628 | Msa1004830:intron |
| CATCTAATAGCTTGTGAAGA+AGG | 0.419163 | 7_1:+2494410 | None:intergenic |
| ACTTCAATTATATTTGGCTT+AGG | 0.429822 | 7_1:+2494952 | None:intergenic |
| GGCACATATCCCTATTCCTG+GGG | 0.430862 | 7_1:+2493214 | None:intergenic |
| AGTACCTTATTTGTCAATGT+AGG | 0.432436 | 7_1:+2495407 | None:intergenic |
| TCTTGTATCTTGTGCAACTC+TGG | 0.442407 | 7_1:+2495708 | None:intergenic |
| TGTGCGGGTGGACTTGCCAA+TGG | 0.448317 | 7_1:-2493269 | Msa1004830:CDS |
| GTTGCTTCCTTGAGCTCAAA+GGG | 0.457113 | 7_1:+2495771 | None:intergenic |
| GTTTCTCAACTCTTGAAACT+TGG | 0.463639 | 7_1:-2496259 | Msa1004830:CDS |
| AACATTTGTTGAGACCTTTG+TGG | 0.472446 | 7_1:+2494383 | None:intergenic |
| ACCCCACAATGGAAATCAAA+AGG | 0.484451 | 7_1:-2495487 | Msa1004830:CDS |
| TTGATGTGAATGAGGAAAGA+AGG | 0.497239 | 7_1:-2494825 | Msa1004830:CDS |
| ATACTCCAATCATATGCAAA+AGG | 0.499232 | 7_1:-2494737 | Msa1004830:CDS |
| GTACCTTATTTGTCAATGTA+GGG | 0.505469 | 7_1:+2495408 | None:intergenic |
| AATGTAGGGTCCTTCTCAAA+AGG | 0.508593 | 7_1:+2495422 | None:intergenic |
| GCCTTATCTTTGCATCCTCA+AGG | 0.511294 | 7_1:-2495743 | Msa1004830:CDS |
| TTTATCAACAGGTTGAGCAT+TGG | 0.513161 | 7_1:-2496124 | Msa1004830:intron |
| TGCAACAAATATAGTTTCCA+AGG | 0.516218 | 7_1:-2494576 | Msa1004830:CDS |
| GTGACATTCAGCCGAGCCCT+AGG | 0.516793 | 7_1:-2493303 | Msa1004830:CDS |
| TAGGGAAAAGCATCCTGTGC+GGG | 0.518259 | 7_1:-2493284 | Msa1004830:CDS |
| TGTTGCTTCCTTGAGCTCAA+AGG | 0.526671 | 7_1:+2495770 | None:intergenic |
| TGCTTACACGAACAAGAGCT+TGG | 0.532302 | 7_1:+2496227 | None:intergenic |
| ACAATTAAGTCAAAACCTAA+AGG | 0.532444 | 7_1:-2494621 | Msa1004830:CDS |
| GAATCTATTTGATGTGAATG+AGG | 0.532729 | 7_1:-2494833 | Msa1004830:CDS |
| ATTGGCAAGTCCACCCGCAC+AGG | 0.532835 | 7_1:+2493271 | None:intergenic |
| GGAGTGTCCCTTTGAGCTCA+AGG | 0.542762 | 7_1:-2495778 | Msa1004830:CDS |
| TCATGATCAAAATGTAATTG+AGG | 0.546813 | 7_1:-2494860 | Msa1004830:CDS |
| ATCTAATAGCTTGTGAAGAA+GGG | 0.549788 | 7_1:+2494411 | None:intergenic |
| TGGGTAACCGAAAGCCCCAT+TGG | 0.552811 | 7_1:+2493253 | None:intergenic |
| TGGCACATATCCCTATTCCT+GGG | 0.553801 | 7_1:+2493213 | None:intergenic |
| ATCTTTGCATCCTCAAGGTG+TGG | 0.556366 | 7_1:-2495738 | Msa1004830:CDS |
| TGGAAATTCTCCACACCTTG+AGG | 0.556562 | 7_1:+2495728 | None:intergenic |
| ACATATCCCTATTCCTGGGG+GGG | 0.567838 | 7_1:+2493217 | None:intergenic |
| GATTGTAGAACAAAACATGT+TGG | 0.571196 | 7_1:-2496102 | Msa1004830:CDS |
| TGCGGGTGGACTTGCCAATG+GGG | 0.585370 | 7_1:-2493267 | Msa1004830:CDS |
| ACCTTGAGGATGCAAAGATA+AGG | 0.588119 | 7_1:+2495742 | None:intergenic |
| TATTTGGCTTAGGAACATGT+TGG | 0.596043 | 7_1:+2494962 | None:intergenic |
| CACGAACAAGAGCTTGGTCA+TGG | 0.600356 | 7_1:+2496233 | None:intergenic |
| CACATATCCCTATTCCTGGG+GGG | 0.609864 | 7_1:+2493216 | None:intergenic |
| TGACATTCAGCCGAGCCCTA+GGG | 0.620111 | 7_1:-2493302 | Msa1004830:CDS |
| GGAAAAGCATCCTGTGCGGG+TGG | 0.624763 | 7_1:-2493281 | Msa1004830:CDS |
| ATGTGAATGAGGAAAGAAGG+AGG | 0.624805 | 7_1:-2494822 | Msa1004830:CDS |
| GCACATATCCCTATTCCTGG+GGG | 0.630451 | 7_1:+2493215 | None:intergenic |
| TTCATCAAAACACCCCACAA+TGG | 0.631056 | 7_1:-2495498 | Msa1004830:CDS |
| CTAGGGAAAAGCATCCTGTG+CGG | 0.685396 | 7_1:-2493285 | Msa1004830:CDS |
| CTATTAGATGGAATCCACAA+AGG | 0.687305 | 7_1:-2494397 | Msa1004830:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAAAATAAAAAAAT+TGG | + | chr7_1:2493403-2493422 | None:intergenic | 0.0% |
| !!! | AAAAAATTAGAATATTTTGA+TGG | + | chr7_1:2494050-2494069 | None:intergenic | 10.0% |
| !!! | AATAATTTAGCTTTATTTTA+TGG | + | chr7_1:2494307-2494326 | None:intergenic | 10.0% |
| !! | TCAATAATATAATATATTCT+AGG | + | chr7_1:2495584-2495603 | None:intergenic | 10.0% |
| !!! | TGATGTTAAATTTTTCAATT+TGG | + | chr7_1:2493256-2493275 | None:intergenic | 15.0% |
| !! | AACTATTAAATAAAAGAGAA+AGG | + | chr7_1:2493428-2493447 | None:intergenic | 15.0% |
| !! | TATATTGTTTATTTATCAAC+AGG | - | chr7_1:2493469-2493488 | Msa1004830:intron | 15.0% |
| !! | TTAGTTACTATTTCAAAAAT+AGG | - | chr7_1:2493804-2493823 | Msa1004830:intron | 15.0% |
| !! | TAGTTACTATTTCAAAAATA+GGG | - | chr7_1:2493805-2493824 | Msa1004830:intron | 15.0% |
| !!! | AGATTTTGACTTTAAAATTT+GGG | - | chr7_1:2493918-2493937 | Msa1004830:intron | 15.0% |
| !! | ATATATATGTATATTATTGC+AGG | - | chr7_1:2494535-2494554 | Msa1004830:CDS | 15.0% |
| !! | TCAATAATATAATTTCTGTT+TGG | + | chr7_1:2494904-2494923 | None:intergenic | 15.0% |
| !!! | AAATATTTTTACAAAACTTG+AGG | - | chr7_1:2495719-2495738 | Msa1004830:CDS | 15.0% |
| !! | TAATAGTCAAATTGTATATT+TGG | - | chr7_1:2496015-2496034 | Msa1004830:intron | 15.0% |
| !!! | AAATAAGTTATATTTGTTAC+CGG | + | chr7_1:2496154-2496173 | None:intergenic | 15.0% |
| !!! | GAGATTTTGACTTTAAAATT+TGG | - | chr7_1:2493917-2493936 | Msa1004830:intron | 20.0% |
| !! | GTATACTCTTGAAATAAATA+AGG | + | chr7_1:2494018-2494037 | None:intergenic | 20.0% |
| !! | TATTAGAACATATTTCACTA+TGG | + | chr7_1:2494516-2494535 | None:intergenic | 20.0% |
| !! | GTTTCTACTTCAATTATATT+TGG | + | chr7_1:2494661-2494680 | None:intergenic | 20.0% |
| !! | AAATCAAAAAACATTATGCA+TGG | - | chr7_1:2494949-2494968 | Msa1004830:CDS | 20.0% |
| !! | ACCAATTAAACTATAACAAA+TGG | - | chr7_1:2495518-2495537 | Msa1004830:intron | 20.0% |
| !!! | ACCATTTGTTATAGTTTAAT+TGG | + | chr7_1:2495522-2495541 | None:intergenic | 20.0% |
| !! | CATAACATAATAAAACATGT+AGG | - | chr7_1:2495903-2495922 | Msa1004830:intron | 20.0% |
| !! | TTGTCAAATGCAATTTAAAA+AGG | - | chr7_1:2496064-2496083 | Msa1004830:intron | 20.0% |
| !! | TGTTATCATAACAGTATTTA+TGG | - | chr7_1:2496108-2496127 | Msa1004830:CDS | 20.0% |
| ! | AAATAATGAAGTGAACTCTA+AGG | - | chr7_1:2493976-2493995 | Msa1004830:intron | 25.0% |
| !!! | TCTAAGGTATAGATTTTATG+AGG | - | chr7_1:2493992-2494011 | Msa1004830:intron | 25.0% |
| ! | AAGAAAATTGCTACTGATAT+TGG | - | chr7_1:2494149-2494168 | Msa1004830:intron | 25.0% |
| !! | TTTCTACTTCATTTTGTCTT+TGG | + | chr7_1:2494576-2494595 | None:intergenic | 25.0% |
| ! | AATGAAGTAGAAACCAAAAA+TGG | - | chr7_1:2494583-2494602 | Msa1004830:CDS | 25.0% |
| !! | ACTTCAATTATATTTGGCTT+AGG | + | chr7_1:2494655-2494674 | None:intergenic | 25.0% |
| !! | TTCAGCACTACTATAATTTT+TGG | + | chr7_1:2494683-2494702 | None:intergenic | 25.0% |
| ! | TCATGATCAAAATGTAATTG+AGG | - | chr7_1:2494744-2494763 | Msa1004830:CDS | 25.0% |
| ! | TGATCTTAGAGAAAATTTGA+AGG | - | chr7_1:2494921-2494940 | Msa1004830:CDS | 25.0% |
| ! | ACAATTAAGTCAAAACCTAA+AGG | - | chr7_1:2494983-2495002 | Msa1004830:intron | 25.0% |
| !!! | GAATAGGTATTTTTGAAAAC+CGG | - | chr7_1:2495338-2495357 | Msa1004830:intron | 25.0% |
| !!! | AGAACTTGTTGAACTAATAA+CGG | + | chr7_1:2495439-2495458 | None:intergenic | 25.0% |
| !!! | TTATCATTTATTTTGTCACC+TGG | - | chr7_1:2495481-2495500 | Msa1004830:CDS | 25.0% |
| ! | TTATGCAATTGAACTTAAGA+TGG | - | chr7_1:2495841-2495860 | Msa1004830:intron | 25.0% |
| ! | CATAATAAAACATGTAGGTT+TGG | - | chr7_1:2495908-2495927 | Msa1004830:intron | 25.0% |
| ! | TTAGATAACATTCTACATGA+AGG | + | chr7_1:2495998-2496017 | None:intergenic | 25.0% |
| ! | TCAAATGCAATTTAAAAAGG+CGG | - | chr7_1:2496067-2496086 | Msa1004830:intron | 25.0% |
| ! | TAAAAACTTACCATCTTTAG+TGG | - | chr7_1:2496193-2496212 | Msa1004830:intron | 25.0% |
| TAACATCACTTGCAATTTCT+AGG | - | chr7_1:2493268-2493287 | Msa1004830:CDS | 30.0% | |
| GATTGTAGAACAAAACATGT+TGG | - | chr7_1:2493502-2493521 | Msa1004830:intron | 30.0% | |
| !!! | TTCCTTTTGATTTCCATTGT+GGG | + | chr7_1:2494122-2494141 | None:intergenic | 30.0% |
| !!! | ATTCCTTTTGATTTCCATTG+TGG | + | chr7_1:2494123-2494142 | None:intergenic | 30.0% |
| ! | GTACCTTATTTGTCAATGTA+GGG | + | chr7_1:2494199-2494218 | None:intergenic | 30.0% |
| ! | AGTACCTTATTTGTCAATGT+AGG | + | chr7_1:2494200-2494219 | None:intergenic | 30.0% |
| GTTGTTTACATAAGCTATCA+TGG | - | chr7_1:2494345-2494364 | Msa1004830:intron | 30.0% | |
| ! | ATCAACACTACTACCATTTT+TGG | + | chr7_1:2494599-2494618 | None:intergenic | 30.0% |
| !! | CATTTTGATCATGATCATGT+TGG | + | chr7_1:2494738-2494757 | None:intergenic | 30.0% |
| GAATCTATTTGATGTGAATG+AGG | - | chr7_1:2494771-2494790 | Msa1004830:CDS | 30.0% | |
| ATACTCCAATCATATGCAAA+AGG | - | chr7_1:2494867-2494886 | Msa1004830:CDS | 30.0% | |
| ! | TACATCCTTTTGCATATGAT+TGG | + | chr7_1:2494875-2494894 | None:intergenic | 30.0% |
| CAAAAAACATTATGCATGGA+AGG | - | chr7_1:2494953-2494972 | Msa1004830:CDS | 30.0% | |
| GTGTTATCATATCATCCTTT+AGG | + | chr7_1:2495001-2495020 | None:intergenic | 30.0% | |
| TGCAACAAATATAGTTTCCA+AGG | - | chr7_1:2495028-2495047 | Msa1004830:intron | 30.0% | |
| GCAACATGCTTGATAAATTA+AGG | - | chr7_1:2495081-2495100 | Msa1004830:intron | 30.0% | |
| ! | ATCTAATAGCTTGTGAAGAA+GGG | + | chr7_1:2495196-2495215 | None:intergenic | 30.0% |
| ! | CAAGTAGAACATATTTTCCA+AGG | - | chr7_1:2495245-2495264 | Msa1004830:intron | 30.0% |
| !! | TTACAATTTCTAGTTCGATC+CGG | + | chr7_1:2495360-2495379 | None:intergenic | 30.0% |
| ! | AAATTGTAAGGTTGGTCAAT+TGG | - | chr7_1:2495371-2495390 | Msa1004830:intron | 30.0% |
| ! | CATTGTTGATGAATAATCTC+CGG | - | chr7_1:2496132-2496151 | Msa1004830:intron | 30.0% |
| GTTTCTCAACTCTTGAAACT+TGG | - | chr7_1:2493345-2493364 | Msa1004830:intron | 35.0% | |
| ! | TTTATCAACAGGTTGAGCAT+TGG | - | chr7_1:2493480-2493499 | Msa1004830:intron | 35.0% |
| ! | GTACTTGAGCTCTTTCTTTT+AGG | + | chr7_1:2493561-2493580 | None:intergenic | 35.0% |
| !!! | TCCTTTTGATTTCCATTGTG+GGG | + | chr7_1:2494121-2494140 | None:intergenic | 35.0% |
| !! | AGTTACTTTGCCTTTTGAGA+AGG | - | chr7_1:2494172-2494191 | Msa1004830:intron | 35.0% |
| TGAGCTTAATAAGTCACATG+AGG | + | chr7_1:2494444-2494463 | None:intergenic | 35.0% | |
| ! | TATTTGGCTTAGGAACATGT+TGG | + | chr7_1:2494645-2494664 | None:intergenic | 35.0% |
| TTGATGTGAATGAGGAAAGA+AGG | - | chr7_1:2494779-2494798 | Msa1004830:CDS | 35.0% | |
| AGTTTCCAAGGAAAAAGTGA+AGG | - | chr7_1:2495040-2495059 | Msa1004830:intron | 35.0% | |
| !!! | ATTCTCCTTCACTTTTTCCT+TGG | + | chr7_1:2495048-2495067 | None:intergenic | 35.0% |
| ! | CATCTAATAGCTTGTGAAGA+AGG | + | chr7_1:2495197-2495216 | None:intergenic | 35.0% |
| CTTCTTCACAAGCTATTAGA+TGG | - | chr7_1:2495195-2495214 | Msa1004830:intron | 35.0% | |
| CTATTAGATGGAATCCACAA+AGG | - | chr7_1:2495207-2495226 | Msa1004830:intron | 35.0% | |
| ! | AACATTTGTTGAGACCTTTG+TGG | + | chr7_1:2495224-2495243 | None:intergenic | 35.0% |
| ! | TGATGTGTATGCATTTTCCT+TGG | + | chr7_1:2495265-2495284 | None:intergenic | 35.0% |
| GCATACACATCATCAACATT+TGG | - | chr7_1:2495273-2495292 | Msa1004830:intron | 35.0% | |
| CACATCATCAACATTTGGAT+TGG | - | chr7_1:2495278-2495297 | Msa1004830:intron | 35.0% | |
| TATTCATTAGTGTGCTCATC+TGG | + | chr7_1:2495323-2495342 | None:intergenic | 35.0% | |
| AGATGAGCACACTAATGAAT+AGG | - | chr7_1:2495322-2495341 | Msa1004830:intron | 35.0% | |
| GGATCGAACTAGAAATTGTA+AGG | - | chr7_1:2495359-2495378 | Msa1004830:intron | 35.0% | |
| CGAACTAGAAATTGTAAGGT+TGG | - | chr7_1:2495363-2495382 | Msa1004830:intron | 35.0% | |
| GTACCTTAGTTTAGTTGAAC+TGG | - | chr7_1:2495408-2495427 | Msa1004830:intron | 35.0% | |
| CAACCAGTTCAACTAAACTA+AGG | + | chr7_1:2495414-2495433 | None:intergenic | 35.0% | |
| CAATTCGACATGAATGGTTA+AGG | + | chr7_1:2495652-2495671 | None:intergenic | 35.0% | |
| TAAGCTCAATTCGACATGAA+TGG | + | chr7_1:2495658-2495677 | None:intergenic | 35.0% | |
| ! | TTGTTCACTATGCTTGCTAA+TGG | - | chr7_1:2495809-2495828 | Msa1004830:intron | 35.0% |
| ACCTTGAGGATGCAAAGATA+AGG | + | chr7_1:2493865-2493884 | None:intergenic | 40.0% | |
| TCTTGTATCTTGTGCAACTC+TGG | + | chr7_1:2493899-2493918 | None:intergenic | 40.0% | |
| TTCATCAAAACACCCCACAA+TGG | - | chr7_1:2494106-2494125 | Msa1004830:intron | 40.0% | |
| ACCCCACAATGGAAATCAAA+AGG | - | chr7_1:2494117-2494136 | Msa1004830:intron | 40.0% | |
| AATGTAGGGTCCTTCTCAAA+AGG | + | chr7_1:2494185-2494204 | None:intergenic | 40.0% | |
| GGACCCTACATTGACAAATA+AGG | - | chr7_1:2494193-2494212 | Msa1004830:intron | 40.0% | |
| ATGTGAATGAGGAAAGAAGG+AGG | - | chr7_1:2494782-2494801 | Msa1004830:CDS | 40.0% | |
| ATTGGAAGATGATGTCAGTG+AGG | - | chr7_1:2495296-2495315 | Msa1004830:intron | 40.0% | |
| TGCAATTGACGTTTGAATCG+AGG | - | chr7_1:2495620-2495639 | Msa1004830:intron | 40.0% | |
| GCAATTGACGTTTGAATCGA+GGG | - | chr7_1:2495621-2495640 | Msa1004830:intron | 40.0% | |
| TGCTTACACGAACAAGAGCT+TGG | + | chr7_1:2493380-2493399 | None:intergenic | 45.0% | |
| GTTGCTTCCTTGAGCTCAAA+GGG | + | chr7_1:2493836-2493855 | None:intergenic | 45.0% | |
| ! | TGTTGCTTCCTTGAGCTCAA+AGG | + | chr7_1:2493837-2493856 | None:intergenic | 45.0% |
| GCCTTATCTTTGCATCCTCA+AGG | - | chr7_1:2493861-2493880 | Msa1004830:intron | 45.0% | |
| ATCTTTGCATCCTCAAGGTG+TGG | - | chr7_1:2493866-2493885 | Msa1004830:intron | 45.0% | |
| TGGAAATTCTCCACACCTTG+AGG | + | chr7_1:2493879-2493898 | None:intergenic | 45.0% | |
| TGCAGCTGTTCTACAAGCTT+TGG | - | chr7_1:2494819-2494838 | Msa1004830:CDS | 45.0% | |
| TGGTTCAACGTTGTTGAACC+AGG | + | chr7_1:2495502-2495521 | None:intergenic | 45.0% | |
| GAGAGAGACTCCACTAAAGA+TGG | + | chr7_1:2496206-2496225 | None:intergenic | 45.0% | |
| !! | AATTAGTAAATTAATTAAAA+TGG | + | chr7_1:2493785-2493804 | None:intergenic | 5.0% |
| CACGAACAAGAGCTTGGTCA+TGG | + | chr7_1:2493374-2493393 | None:intergenic | 50.0% | |
| ! | GCACAGGATGCTTTTCCCTA+GGG | + | chr7_1:2496320-2496339 | None:intergenic | 50.0% |
| !! | CTAGGGAAAAGCATCCTGTG+CGG | - | chr7_1:2496319-2496338 | Msa1004830:CDS | 50.0% |
| !! | TAGGGAAAAGCATCCTGTGC+GGG | - | chr7_1:2496320-2496339 | Msa1004830:CDS | 50.0% |
| ! | GGAGTGTCCCTTTGAGCTCA+AGG | - | chr7_1:2493826-2493845 | Msa1004830:intron | 55.0% |
| TGACATTCAGCCGAGCCCTA+GGG | - | chr7_1:2496302-2496321 | Msa1004830:CDS | 55.0% | |
| ! | GGATGCTTTTCCCTAGGGCT+CGG | + | chr7_1:2496315-2496334 | None:intergenic | 55.0% |
| ! | CGCACAGGATGCTTTTCCCT+AGG | + | chr7_1:2496321-2496340 | None:intergenic | 55.0% |
| GGACTTGCCAATGGGGCTTT+CGG | - | chr7_1:2496344-2496363 | Msa1004830:CDS | 55.0% | |
| TGGGTAACCGAAAGCCCCAT+TGG | + | chr7_1:2496354-2496373 | None:intergenic | 55.0% | |
| ! | GGGGGGAGCATAAGCAACAT+GGG | + | chr7_1:2496373-2496392 | None:intergenic | 55.0% |
| GTGACATTCAGCCGAGCCCT+AGG | - | chr7_1:2496301-2496320 | Msa1004830:CDS | 60.0% | |
| !! | GGAAAAGCATCCTGTGCGGG+TGG | - | chr7_1:2496323-2496342 | Msa1004830:CDS | 60.0% |
| ATTGGCAAGTCCACCCGCAC+AGG | + | chr7_1:2496336-2496355 | None:intergenic | 60.0% | |
| ! | TGTGCGGGTGGACTTGCCAA+TGG | - | chr7_1:2496335-2496354 | Msa1004830:CDS | 60.0% |
| ! | GTGCGGGTGGACTTGCCAAT+GGG | - | chr7_1:2496336-2496355 | Msa1004830:CDS | 60.0% |
| ! | TGCGGGTGGACTTGCCAATG+GGG | - | chr7_1:2496337-2496356 | Msa1004830:CDS | 60.0% |
| ! | GGGGGGGAGCATAAGCAACA+TGG | + | chr7_1:2496374-2496393 | None:intergenic | 60.0% |
| ! | TGTTGCTTATGCTCCCCCCC+AGG | - | chr7_1:2496374-2496393 | Msa1004830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 2493225 | 2496401 | 2493225 | ID=Msa1004830;Name=Msa1004830 |
| chr7_1 | mRNA | 2493225 | 2496401 | 2493225 | ID=Msa1004830-mRNA-1;Parent=Msa1004830;Name=Msa1004830-mRNA-1;_AED=0.19;_eAED=0.24;_QI=0|0|0|0.85|1|1|7|0|376 |
| chr7_1 | exon | 2496234 | 2496401 | 2496234 | ID=Msa1004830-mRNA-1:exon:1064;Parent=Msa1004830-mRNA-1 |
| chr7_1 | exon | 2496089 | 2496135 | 2496089 | ID=Msa1004830-mRNA-1:exon:1063;Parent=Msa1004830-mRNA-1 |
| chr7_1 | exon | 2495629 | 2495800 | 2495629 | ID=Msa1004830-mRNA-1:exon:1062;Parent=Msa1004830-mRNA-1 |
| chr7_1 | exon | 2495412 | 2495534 | 2495412 | ID=Msa1004830-mRNA-1:exon:1061;Parent=Msa1004830-mRNA-1 |
| chr7_1 | exon | 2494735 | 2494998 | 2494735 | ID=Msa1004830-mRNA-1:exon:1060;Parent=Msa1004830-mRNA-1 |
| chr7_1 | exon | 2494398 | 2494651 | 2494398 | ID=Msa1004830-mRNA-1:exon:1059;Parent=Msa1004830-mRNA-1 |
| chr7_1 | exon | 2493225 | 2493327 | 2493225 | ID=Msa1004830-mRNA-1:exon:1058;Parent=Msa1004830-mRNA-1 |
| chr7_1 | CDS | 2496234 | 2496401 | 2496234 | ID=Msa1004830-mRNA-1:cds;Parent=Msa1004830-mRNA-1 |
| chr7_1 | CDS | 2496089 | 2496135 | 2496089 | ID=Msa1004830-mRNA-1:cds;Parent=Msa1004830-mRNA-1 |
| chr7_1 | CDS | 2495629 | 2495800 | 2495629 | ID=Msa1004830-mRNA-1:cds;Parent=Msa1004830-mRNA-1 |
| chr7_1 | CDS | 2495412 | 2495534 | 2495412 | ID=Msa1004830-mRNA-1:cds;Parent=Msa1004830-mRNA-1 |
| chr7_1 | CDS | 2494735 | 2494998 | 2494735 | ID=Msa1004830-mRNA-1:cds;Parent=Msa1004830-mRNA-1 |
| chr7_1 | CDS | 2494398 | 2494651 | 2494398 | ID=Msa1004830-mRNA-1:cds;Parent=Msa1004830-mRNA-1 |
| chr7_1 | CDS | 2493225 | 2493327 | 2493225 | ID=Msa1004830-mRNA-1:cds;Parent=Msa1004830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
