Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004930 | XP_013447818.1 | 88.393 | 448 | 42 | 2 | 1 | 446 | 1 | 440 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004930 | sp|Q54I39|IST1L_DICDI | 33.333 | 177 | 115 | 3 | 1 | 176 | 1 | 175 | 2.02e-17 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004930 | A0A072TVN0 | 88.393 | 448 | 42 | 2 | 1 | 446 | 1 | 440 | 0.0 | 800 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1004830 | Msa1004930 | 0.808008 | 3.824139e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004930 | MtrunA17_Chr7g0214961 | 88.393 | 448 | 42 | 2 | 1 | 446 | 1 | 440 | 0.0 | 800 |
| Msa1004930 | MtrunA17_Chr1g0210081 | 42.786 | 201 | 113 | 2 | 2 | 200 | 7 | 207 | 8.99e-49 | 171 |
| Msa1004930 | MtrunA17_Chr8g0370931 | 33.195 | 241 | 138 | 4 | 1 | 218 | 19 | 259 | 1.47e-33 | 130 |
| Msa1004930 | MtrunA17_Chr1g0209771 | 38.415 | 164 | 101 | 0 | 8 | 171 | 13 | 176 | 2.67e-33 | 127 |
| Msa1004930 | MtrunA17_Chr6g0487991 | 34.706 | 170 | 110 | 1 | 3 | 171 | 1 | 170 | 3.66e-29 | 121 |
| Msa1004930 | MtrunA17_Chr6g0464791 | 36.585 | 164 | 104 | 0 | 10 | 173 | 15 | 178 | 8.15e-29 | 119 |
| Msa1004930 | MtrunA17_Chr2g0324121 | 34.320 | 169 | 111 | 0 | 3 | 171 | 5 | 173 | 3.82e-26 | 111 |
| Msa1004930 | MtrunA17_Chr4g0042021 | 32.335 | 167 | 111 | 2 | 6 | 171 | 4 | 169 | 1.45e-18 | 87.0 |
| Msa1004930 | MtrunA17_Chr8g0390551 | 28.000 | 175 | 117 | 1 | 2 | 176 | 4 | 169 | 5.25e-18 | 86.7 |
| Msa1004930 | MtrunA17_Chr4g0004491 | 26.857 | 175 | 116 | 3 | 3 | 176 | 8 | 171 | 1.26e-15 | 77.8 |
| Msa1004930 | MtrunA17_Chr2g0331801 | 28.235 | 170 | 113 | 1 | 2 | 171 | 4 | 164 | 6.57e-15 | 76.3 |
| Msa1004930 | MtrunA17_Chr6g0485461 | 28.000 | 175 | 117 | 1 | 2 | 176 | 60 | 225 | 1.30e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004930 | AT1G13340.1 | 45.161 | 186 | 101 | 1 | 3 | 187 | 8 | 193 | 1.20e-46 | 166 |
| Msa1004930 | AT1G25420.1 | 36.145 | 166 | 106 | 0 | 8 | 173 | 13 | 178 | 3.56e-30 | 119 |
| Msa1004930 | AT4G35730.1 | 35.593 | 177 | 113 | 1 | 1 | 176 | 19 | 195 | 5.12e-30 | 122 |
| Msa1004930 | AT1G34220.2 | 35.294 | 170 | 109 | 1 | 3 | 171 | 7 | 176 | 4.36e-29 | 120 |
| Msa1004930 | AT1G25420.4 | 35.099 | 151 | 98 | 0 | 23 | 173 | 1 | 151 | 3.29e-26 | 108 |
| Msa1004930 | AT2G19710.1 | 35.802 | 162 | 104 | 0 | 10 | 171 | 12 | 173 | 8.18e-26 | 111 |
| Msa1004930 | AT1G34220.1 | 26.384 | 307 | 167 | 6 | 3 | 254 | 7 | 309 | 6.64e-24 | 105 |
| Msa1004930 | AT4G29440.1 | 32.955 | 176 | 117 | 1 | 3 | 177 | 4 | 179 | 1.01e-22 | 102 |
| Msa1004930 | AT2G14830.1 | 29.545 | 176 | 124 | 0 | 3 | 178 | 5 | 180 | 3.23e-22 | 98.2 |
| Msa1004930 | AT1G25420.3 | 39.252 | 107 | 65 | 0 | 65 | 171 | 2 | 108 | 4.73e-21 | 92.4 |
| Msa1004930 | AT1G25420.2 | 39.252 | 107 | 65 | 0 | 65 | 171 | 2 | 108 | 4.73e-21 | 92.4 |
| Msa1004930 | AT4G29440.2 | 34.058 | 138 | 91 | 0 | 40 | 177 | 14 | 151 | 3.17e-19 | 91.3 |
| Msa1004930 | AT1G79910.1 | 25.714 | 175 | 121 | 1 | 2 | 176 | 4 | 169 | 1.78e-17 | 84.3 |
| Msa1004930 | AT4G32350.1 | 26.857 | 175 | 119 | 1 | 2 | 176 | 4 | 169 | 1.79e-16 | 82.4 |
| Msa1004930 | AT4G32350.3 | 26.857 | 175 | 119 | 1 | 2 | 176 | 4 | 169 | 1.79e-16 | 82.4 |
| Msa1004930 | AT1G52315.1 | 28.492 | 179 | 114 | 3 | 8 | 185 | 10 | 175 | 6.27e-16 | 79.3 |
| Msa1004930 | AT3G15490.1 | 30.952 | 126 | 84 | 2 | 40 | 162 | 8 | 133 | 1.01e-13 | 70.5 |
| Msa1004930 | AT1G51900.1 | 27.108 | 166 | 108 | 3 | 21 | 178 | 25 | 185 | 1.82e-11 | 67.0 |
| Msa1004930 | AT1G79910.3 | 25.203 | 123 | 83 | 1 | 54 | 176 | 1 | 114 | 3.83e-11 | 64.7 |
Find 48 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAATTATGGGTCTTAT+TGG | 0.200751 | 7_1:+2631883 | None:intergenic |
| GTTTCTACTTCAATTATATT+TGG | 0.212451 | 7_1:-2633267 | None:intergenic |
| TAACATCACTTGCAATTTCT+AGG | 0.220844 | 7_1:+2631935 | Msa1004930:CDS |
| AAGAAAATTGCTACTGATAT+TGG | 0.234595 | 7_1:+2632725 | Msa1004930:CDS |
| GTGTTATCATATCATCCTTT+AGG | 0.277902 | 7_1:-2633608 | None:intergenic |
| GCAACATGCTTGATAAATTA+AGG | 0.324625 | 7_1:+2633691 | Msa1004930:CDS |
| CTTCTTCACAAGCTATTAGA+TGG | 0.341236 | 7_1:+2633805 | Msa1004930:CDS |
| TATGTTCTACTTGCAACATT+TGG | 0.359200 | 7_1:-2633846 | None:intergenic |
| TCAATAATATAGTTTCTGTT+TGG | 0.366209 | 7_1:-2633510 | None:intergenic |
| GGACCCTACATTGACAAATA+AGG | 0.380857 | 7_1:+2632769 | Msa1004930:CDS |
| TATTCATTAGTGTGCTCATC+TGG | 0.396376 | 7_1:-2633931 | None:intergenic |
| TGCAGCTGTTCTACAAGCTT+TGG | 0.404714 | 7_1:+2633428 | Msa1004930:CDS |
| GCATACACATCATCAACATT+TGG | 0.405313 | 7_1:+2633884 | Msa1004930:CDS |
| ATTACCTTATTTGTCAATGT+AGG | 0.408163 | 7_1:-2632773 | None:intergenic |
| AAATAATGAAGTGAACTCTA+AGG | 0.413519 | 7_1:+2632552 | Msa1004930:CDS |
| CATCTAATAGCTTGTGAAGA+AGG | 0.419163 | 7_1:-2633804 | None:intergenic |
| TCTTGTATCCTGTGCAACTC+TGG | 0.424424 | 7_1:-2632472 | None:intergenic |
| ACTTCAATTATATTTGGCTT+AGG | 0.429822 | 7_1:-2633261 | None:intergenic |
| CACATCATCAACATTTGGAT+TGG | 0.446646 | 7_1:+2633889 | Msa1004930:CDS |
| GTTGCTTCCTTGAGCTCAAA+GGG | 0.457113 | 7_1:-2632409 | None:intergenic |
| GTTTCTCAACTCTTGAAACT+TGG | 0.463639 | 7_1:+2632012 | Msa1004930:CDS |
| TTACCTTATTTGTCAATGTA+GGG | 0.465365 | 7_1:-2632772 | None:intergenic |
| ACCCCACAATGGAAATCAAA+AGG | 0.484451 | 7_1:+2632693 | Msa1004930:CDS |
| GAGAATTTCCAGAGTTGCAC+AGG | 0.493346 | 7_1:+2632464 | Msa1004930:CDS |
| TTGATGTGAATGAGGAAAGA+AGG | 0.497239 | 7_1:+2633388 | Msa1004930:CDS |
| ATACTCCAATCATATGCAAA+AGG | 0.499232 | 7_1:+2633476 | Msa1004930:CDS |
| AATGTAGGGTCCTTCTCAAA+AGG | 0.508593 | 7_1:-2632758 | None:intergenic |
| GCCTTATCTTTGCATCCTCA+AGG | 0.511294 | 7_1:+2632437 | Msa1004930:CDS |
| TGCAACAAATATAGTTTCCA+AGG | 0.516218 | 7_1:+2633638 | Msa1004930:CDS |
| ACATTTGGTTGAGACCTTTG+TGG | 0.516751 | 7_1:-2633831 | None:intergenic |
| TGTTGCTTCCTTGAGCTCAA+AGG | 0.526671 | 7_1:-2632410 | None:intergenic |
| TGCTTACACGAACAAGAGCT+TGG | 0.532302 | 7_1:-2632044 | None:intergenic |
| ACAATTAAGTCAAAACCTAA+AGG | 0.532444 | 7_1:+2633593 | Msa1004930:CDS |
| GAATCTATTTGATGTGAATG+AGG | 0.532729 | 7_1:+2633380 | Msa1004930:CDS |
| GGAGTGTCCCTTTGAGCTCA+AGG | 0.542762 | 7_1:+2632402 | Msa1004930:CDS |
| TCATGATCAAAATGTAATTG+AGG | 0.546813 | 7_1:+2633353 | Msa1004930:CDS |
| ATCTAATAGCTTGTGAAGAA+GGG | 0.549788 | 7_1:-2633803 | None:intergenic |
| ATCTTTGCATCCTCAAGGTG+TGG | 0.556366 | 7_1:+2632442 | Msa1004930:CDS |
| TGGAAATTCTCCACACCTTG+AGG | 0.556562 | 7_1:-2632452 | None:intergenic |
| ACCTTGAGGATGCAAAGATA+AGG | 0.588119 | 7_1:-2632438 | None:intergenic |
| TATTTGGCTTAGGAACATGT+TGG | 0.596043 | 7_1:-2633251 | None:intergenic |
| CACGAACAAGAGCTTGGTCA+TGG | 0.600356 | 7_1:-2632038 | None:intergenic |
| TTTATCAACAGGTTGAGCAG+TGG | 0.601797 | 7_1:+2632146 | Msa1004930:intron |
| ATGTGAATGAGGAAAGAAGG+AGG | 0.624805 | 7_1:+2633391 | Msa1004930:CDS |
| TTCATCAAAACACCCCACAA+TGG | 0.631056 | 7_1:+2632682 | Msa1004930:CDS |
| GATTGTAGAACAAAACATGT+TGG | 0.635163 | 7_1:+2632168 | Msa1004930:CDS |
| CTATTAGATGGAATCCACAA+AGG | 0.687305 | 7_1:+2633817 | Msa1004930:CDS |
| ATTGGAAGATGATGTCAGTG+AGG | 0.788704 | 7_1:+2633907 | Msa1004930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATTAGAATATTTTGA+TGG | - | chr7_1:2632626-2632645 | None:intergenic | 10.0% |
| !!! | AAAAAATTAGAATATTTTGA+TGG | - | chr7_1:2632626-2632645 | None:intergenic | 10.0% |
| !!! | TGATGTTAAATTTTTCAATT+TGG | - | chr7_1:2631923-2631942 | None:intergenic | 15.0% |
| !! | TATATTGTTTATTTATCAAC+AGG | + | chr7_1:2632135-2632154 | Msa1004930:intron | 15.0% |
| !! | TTAGTTACTATTTCAAAAAT+AGG | + | chr7_1:2632380-2632399 | Msa1004930:intron | 15.0% |
| !! | TAGTTACTATTTCAAAAATA+GGG | + | chr7_1:2632381-2632400 | Msa1004930:intron | 15.0% |
| !!! | AGATTTTGACTTTAAAATTT+GGG | + | chr7_1:2632494-2632513 | Msa1004930:CDS | 15.0% |
| !!! | AATAATTTAGCTCTATTTTA+TGG | - | chr7_1:2632914-2632933 | None:intergenic | 15.0% |
| !!! | TGATGTTAAATTTTTCAATT+TGG | - | chr7_1:2631923-2631942 | None:intergenic | 15.0% |
| !! | TATATTGTTTATTTATCAAC+AGG | + | chr7_1:2632135-2632154 | Msa1004930:intron | 15.0% |
| !! | TTAGTTACTATTTCAAAAAT+AGG | + | chr7_1:2632380-2632399 | Msa1004930:intron | 15.0% |
| !! | TAGTTACTATTTCAAAAATA+GGG | + | chr7_1:2632381-2632400 | Msa1004930:intron | 15.0% |
| !!! | AGATTTTGACTTTAAAATTT+GGG | + | chr7_1:2632494-2632513 | Msa1004930:CDS | 15.0% |
| !!! | AATAATTTAGCTCTATTTTA+TGG | - | chr7_1:2632914-2632933 | None:intergenic | 15.0% |
| !!! | GAGATTTTGACTTTAAAATT+TGG | + | chr7_1:2632493-2632512 | Msa1004930:CDS | 20.0% |
| !! | GTATACTCTTGAAATAAATA+AGG | - | chr7_1:2632594-2632613 | None:intergenic | 20.0% |
| !! | TATTAGAACATATTTCACTA+TGG | - | chr7_1:2633120-2633139 | None:intergenic | 20.0% |
| !! | ATATATATGTATATTCTTGC+AGG | + | chr7_1:2633143-2633162 | Msa1004930:intron | 20.0% |
| !! | GTTTCTACTTCAATTATATT+TGG | - | chr7_1:2633270-2633289 | None:intergenic | 20.0% |
| !! | TCAATAATATAGTTTCTGTT+TGG | - | chr7_1:2633513-2633532 | None:intergenic | 20.0% |
| !! | GATCTTAAAGAAAAATTTGA+AGG | + | chr7_1:2633531-2633550 | Msa1004930:CDS | 20.0% |
| !! | AAATCAAAAAACATTATGCA+TGG | + | chr7_1:2633559-2633578 | Msa1004930:CDS | 20.0% |
| !!! | GAGATTTTGACTTTAAAATT+TGG | + | chr7_1:2632493-2632512 | Msa1004930:CDS | 20.0% |
| !! | GTATACTCTTGAAATAAATA+AGG | - | chr7_1:2632594-2632613 | None:intergenic | 20.0% |
| !! | TATTAGAACATATTTCACTA+TGG | - | chr7_1:2633120-2633139 | None:intergenic | 20.0% |
| !! | ATATATATGTATATTCTTGC+AGG | + | chr7_1:2633143-2633162 | Msa1004930:intron | 20.0% |
| !! | GTTTCTACTTCAATTATATT+TGG | - | chr7_1:2633270-2633289 | None:intergenic | 20.0% |
| !! | TCAATAATATAGTTTCTGTT+TGG | - | chr7_1:2633513-2633532 | None:intergenic | 20.0% |
| !! | GATCTTAAAGAAAAATTTGA+AGG | + | chr7_1:2633531-2633550 | Msa1004930:CDS | 20.0% |
| !! | AAATCAAAAAACATTATGCA+TGG | + | chr7_1:2633559-2633578 | Msa1004930:CDS | 20.0% |
| ! | AAATAATGAAGTGAACTCTA+AGG | + | chr7_1:2632552-2632571 | Msa1004930:CDS | 25.0% |
| !!! | TCTAAGGTATAGATTTTATG+AGG | + | chr7_1:2632568-2632587 | Msa1004930:intron | 25.0% |
| ! | AAGAAAATTGCTACTGATAT+TGG | + | chr7_1:2632725-2632744 | Msa1004930:CDS | 25.0% |
| !! | TTACCTTATTTGTCAATGTA+GGG | - | chr7_1:2632775-2632794 | None:intergenic | 25.0% |
| !! | ATTACCTTATTTGTCAATGT+AGG | - | chr7_1:2632776-2632795 | None:intergenic | 25.0% |
| ! | AAGTTGTTTATAAGCTATCA+TGG | + | chr7_1:2632949-2632968 | Msa1004930:intron | 25.0% |
| !! | TTTCTACTTCATTTTGTCTT+TGG | - | chr7_1:2633185-2633204 | None:intergenic | 25.0% |
| ! | AATGAAGTAGAAACCAAAAA+TGG | + | chr7_1:2633192-2633211 | Msa1004930:CDS | 25.0% |
| !! | ACTTCAATTATATTTGGCTT+AGG | - | chr7_1:2633264-2633283 | None:intergenic | 25.0% |
| !! | TTCAGCACTACTATAATTTT+TGG | - | chr7_1:2633292-2633311 | None:intergenic | 25.0% |
| ! | TCATGATCAAAATGTAATTG+AGG | + | chr7_1:2633353-2633372 | Msa1004930:CDS | 25.0% |
| ! | ACAATTAAGTCAAAACCTAA+AGG | + | chr7_1:2633593-2633612 | Msa1004930:CDS | 25.0% |
| ! | AAATAATGAAGTGAACTCTA+AGG | + | chr7_1:2632552-2632571 | Msa1004930:CDS | 25.0% |
| !!! | TCTAAGGTATAGATTTTATG+AGG | + | chr7_1:2632568-2632587 | Msa1004930:intron | 25.0% |
| ! | AAGAAAATTGCTACTGATAT+TGG | + | chr7_1:2632725-2632744 | Msa1004930:CDS | 25.0% |
| !! | TTACCTTATTTGTCAATGTA+GGG | - | chr7_1:2632775-2632794 | None:intergenic | 25.0% |
| !! | ATTACCTTATTTGTCAATGT+AGG | - | chr7_1:2632776-2632795 | None:intergenic | 25.0% |
| ! | AAGTTGTTTATAAGCTATCA+TGG | + | chr7_1:2632949-2632968 | Msa1004930:intron | 25.0% |
| !! | TTTCTACTTCATTTTGTCTT+TGG | - | chr7_1:2633185-2633204 | None:intergenic | 25.0% |
| ! | AATGAAGTAGAAACCAAAAA+TGG | + | chr7_1:2633192-2633211 | Msa1004930:CDS | 25.0% |
| !! | ACTTCAATTATATTTGGCTT+AGG | - | chr7_1:2633264-2633283 | None:intergenic | 25.0% |
| !! | TTCAGCACTACTATAATTTT+TGG | - | chr7_1:2633292-2633311 | None:intergenic | 25.0% |
| ! | TCATGATCAAAATGTAATTG+AGG | + | chr7_1:2633353-2633372 | Msa1004930:CDS | 25.0% |
| ! | ACAATTAAGTCAAAACCTAA+AGG | + | chr7_1:2633593-2633612 | Msa1004930:CDS | 25.0% |
| TAACATCACTTGCAATTTCT+AGG | + | chr7_1:2631935-2631954 | Msa1004930:CDS | 30.0% | |
| GATTGTAGAACAAAACATGT+TGG | + | chr7_1:2632168-2632187 | Msa1004930:CDS | 30.0% | |
| !!! | TTCCTTTTGATTTCCATTGT+GGG | - | chr7_1:2632698-2632717 | None:intergenic | 30.0% |
| !!! | ATTCCTTTTGATTTCCATTG+TGG | - | chr7_1:2632699-2632718 | None:intergenic | 30.0% |
| TTGTTCAAAGATGATCATAG+TGG | - | chr7_1:2632824-2632843 | None:intergenic | 30.0% | |
| ! | ATCAACACTACTACCATTTT+TGG | - | chr7_1:2633208-2633227 | None:intergenic | 30.0% |
| !! | CATTTTGATCATGATCATGT+TGG | - | chr7_1:2633347-2633366 | None:intergenic | 30.0% |
| GAATCTATTTGATGTGAATG+AGG | + | chr7_1:2633380-2633399 | Msa1004930:CDS | 30.0% | |
| ATACTCCAATCATATGCAAA+AGG | + | chr7_1:2633476-2633495 | Msa1004930:CDS | 30.0% | |
| ! | TACATCCTTTTGCATATGAT+TGG | - | chr7_1:2633484-2633503 | None:intergenic | 30.0% |
| CAAAAAACATTATGCATGGA+AGG | + | chr7_1:2633563-2633582 | Msa1004930:CDS | 30.0% | |
| GTGTTATCATATCATCCTTT+AGG | - | chr7_1:2633611-2633630 | None:intergenic | 30.0% | |
| TGCAACAAATATAGTTTCCA+AGG | + | chr7_1:2633638-2633657 | Msa1004930:CDS | 30.0% | |
| GCAACATGCTTGATAAATTA+AGG | + | chr7_1:2633691-2633710 | Msa1004930:CDS | 30.0% | |
| ! | ATCTAATAGCTTGTGAAGAA+GGG | - | chr7_1:2633806-2633825 | None:intergenic | 30.0% |
| TATGTTCTACTTGCAACATT+TGG | - | chr7_1:2633849-2633868 | None:intergenic | 30.0% | |
| ! | CAAGTAGAACATATTTTCCA+AGG | + | chr7_1:2633856-2633875 | Msa1004930:CDS | 30.0% |
| TAACATCACTTGCAATTTCT+AGG | + | chr7_1:2631935-2631954 | Msa1004930:CDS | 30.0% | |
| GATTGTAGAACAAAACATGT+TGG | + | chr7_1:2632168-2632187 | Msa1004930:CDS | 30.0% | |
| !!! | TTCCTTTTGATTTCCATTGT+GGG | - | chr7_1:2632698-2632717 | None:intergenic | 30.0% |
| !!! | ATTCCTTTTGATTTCCATTG+TGG | - | chr7_1:2632699-2632718 | None:intergenic | 30.0% |
| TTGTTCAAAGATGATCATAG+TGG | - | chr7_1:2632824-2632843 | None:intergenic | 30.0% | |
| ! | ATCAACACTACTACCATTTT+TGG | - | chr7_1:2633208-2633227 | None:intergenic | 30.0% |
| !! | CATTTTGATCATGATCATGT+TGG | - | chr7_1:2633347-2633366 | None:intergenic | 30.0% |
| GAATCTATTTGATGTGAATG+AGG | + | chr7_1:2633380-2633399 | Msa1004930:CDS | 30.0% | |
| ATACTCCAATCATATGCAAA+AGG | + | chr7_1:2633476-2633495 | Msa1004930:CDS | 30.0% | |
| ! | TACATCCTTTTGCATATGAT+TGG | - | chr7_1:2633484-2633503 | None:intergenic | 30.0% |
| CAAAAAACATTATGCATGGA+AGG | + | chr7_1:2633563-2633582 | Msa1004930:CDS | 30.0% | |
| GTGTTATCATATCATCCTTT+AGG | - | chr7_1:2633611-2633630 | None:intergenic | 30.0% | |
| TGCAACAAATATAGTTTCCA+AGG | + | chr7_1:2633638-2633657 | Msa1004930:CDS | 30.0% | |
| GCAACATGCTTGATAAATTA+AGG | + | chr7_1:2633691-2633710 | Msa1004930:CDS | 30.0% | |
| ! | ATCTAATAGCTTGTGAAGAA+GGG | - | chr7_1:2633806-2633825 | None:intergenic | 30.0% |
| TATGTTCTACTTGCAACATT+TGG | - | chr7_1:2633849-2633868 | None:intergenic | 30.0% | |
| ! | CAAGTAGAACATATTTTCCA+AGG | + | chr7_1:2633856-2633875 | Msa1004930:CDS | 30.0% |
| GTTTCTCAACTCTTGAAACT+TGG | + | chr7_1:2632012-2632031 | Msa1004930:CDS | 35.0% | |
| ! | GTACTTGAGCTCTTTCTTTT+AGG | - | chr7_1:2632228-2632247 | None:intergenic | 35.0% |
| !!! | TCCTTTTGATTTCCATTGTG+GGG | - | chr7_1:2632697-2632716 | None:intergenic | 35.0% |
| !! | AGTTACTTTGCCTTTTGAGA+AGG | + | chr7_1:2632748-2632767 | Msa1004930:CDS | 35.0% |
| TGAGCTTAATAAGTCACATG+AGG | - | chr7_1:2633048-2633067 | None:intergenic | 35.0% | |
| ! | TATTTGGCTTAGGAACATGT+TGG | - | chr7_1:2633254-2633273 | None:intergenic | 35.0% |
| TTGATGTGAATGAGGAAAGA+AGG | + | chr7_1:2633388-2633407 | Msa1004930:CDS | 35.0% | |
| AGTTTCCAAGGAAAAAGTGA+AGG | + | chr7_1:2633650-2633669 | Msa1004930:CDS | 35.0% | |
| !!! | ATTCTCCTTCACTTTTTCCT+TGG | - | chr7_1:2633658-2633677 | None:intergenic | 35.0% |
| ! | CATCTAATAGCTTGTGAAGA+AGG | - | chr7_1:2633807-2633826 | None:intergenic | 35.0% |
| CTTCTTCACAAGCTATTAGA+TGG | + | chr7_1:2633805-2633824 | Msa1004930:CDS | 35.0% | |
| CTATTAGATGGAATCCACAA+AGG | + | chr7_1:2633817-2633836 | Msa1004930:CDS | 35.0% | |
| ! | TGATGTGTATGCATTTTCCT+TGG | - | chr7_1:2633876-2633895 | None:intergenic | 35.0% |
| GCATACACATCATCAACATT+TGG | + | chr7_1:2633884-2633903 | Msa1004930:CDS | 35.0% | |
| CACATCATCAACATTTGGAT+TGG | + | chr7_1:2633889-2633908 | Msa1004930:CDS | 35.0% | |
| GTTTCTCAACTCTTGAAACT+TGG | + | chr7_1:2632012-2632031 | Msa1004930:CDS | 35.0% | |
| ! | GTACTTGAGCTCTTTCTTTT+AGG | - | chr7_1:2632228-2632247 | None:intergenic | 35.0% |
| !!! | TCCTTTTGATTTCCATTGTG+GGG | - | chr7_1:2632697-2632716 | None:intergenic | 35.0% |
| !! | AGTTACTTTGCCTTTTGAGA+AGG | + | chr7_1:2632748-2632767 | Msa1004930:CDS | 35.0% |
| TGAGCTTAATAAGTCACATG+AGG | - | chr7_1:2633048-2633067 | None:intergenic | 35.0% | |
| ! | TATTTGGCTTAGGAACATGT+TGG | - | chr7_1:2633254-2633273 | None:intergenic | 35.0% |
| TTGATGTGAATGAGGAAAGA+AGG | + | chr7_1:2633388-2633407 | Msa1004930:CDS | 35.0% | |
| AGTTTCCAAGGAAAAAGTGA+AGG | + | chr7_1:2633650-2633669 | Msa1004930:CDS | 35.0% | |
| !!! | ATTCTCCTTCACTTTTTCCT+TGG | - | chr7_1:2633658-2633677 | None:intergenic | 35.0% |
| ! | CATCTAATAGCTTGTGAAGA+AGG | - | chr7_1:2633807-2633826 | None:intergenic | 35.0% |
| CTTCTTCACAAGCTATTAGA+TGG | + | chr7_1:2633805-2633824 | Msa1004930:CDS | 35.0% | |
| CTATTAGATGGAATCCACAA+AGG | + | chr7_1:2633817-2633836 | Msa1004930:CDS | 35.0% | |
| ! | TGATGTGTATGCATTTTCCT+TGG | - | chr7_1:2633876-2633895 | None:intergenic | 35.0% |
| GCATACACATCATCAACATT+TGG | + | chr7_1:2633884-2633903 | Msa1004930:CDS | 35.0% | |
| CACATCATCAACATTTGGAT+TGG | + | chr7_1:2633889-2633908 | Msa1004930:CDS | 35.0% | |
| ! | TTTATCAACAGGTTGAGCAG+TGG | + | chr7_1:2632146-2632165 | Msa1004930:intron | 40.0% |
| ! | TCAAAAAGAGCACACATGCA+TGG | + | chr7_1:2632327-2632346 | Msa1004930:intron | 40.0% |
| ACCTTGAGGATGCAAAGATA+AGG | - | chr7_1:2632441-2632460 | None:intergenic | 40.0% | |
| TTCATCAAAACACCCCACAA+TGG | + | chr7_1:2632682-2632701 | Msa1004930:CDS | 40.0% | |
| ACCCCACAATGGAAATCAAA+AGG | + | chr7_1:2632693-2632712 | Msa1004930:CDS | 40.0% | |
| AATGTAGGGTCCTTCTCAAA+AGG | - | chr7_1:2632761-2632780 | None:intergenic | 40.0% | |
| GGACCCTACATTGACAAATA+AGG | + | chr7_1:2632769-2632788 | Msa1004930:CDS | 40.0% | |
| ATGTGAATGAGGAAAGAAGG+AGG | + | chr7_1:2633391-2633410 | Msa1004930:CDS | 40.0% | |
| ACATTTGGTTGAGACCTTTG+TGG | - | chr7_1:2633834-2633853 | None:intergenic | 40.0% | |
| ATTGGAAGATGATGTCAGTG+AGG | + | chr7_1:2633907-2633926 | Msa1004930:CDS | 40.0% | |
| ! | TTTATCAACAGGTTGAGCAG+TGG | + | chr7_1:2632146-2632165 | Msa1004930:intron | 40.0% |
| ! | TCAAAAAGAGCACACATGCA+TGG | + | chr7_1:2632327-2632346 | Msa1004930:intron | 40.0% |
| ACCTTGAGGATGCAAAGATA+AGG | - | chr7_1:2632441-2632460 | None:intergenic | 40.0% | |
| TTCATCAAAACACCCCACAA+TGG | + | chr7_1:2632682-2632701 | Msa1004930:CDS | 40.0% | |
| ACCCCACAATGGAAATCAAA+AGG | + | chr7_1:2632693-2632712 | Msa1004930:CDS | 40.0% | |
| AATGTAGGGTCCTTCTCAAA+AGG | - | chr7_1:2632761-2632780 | None:intergenic | 40.0% | |
| GGACCCTACATTGACAAATA+AGG | + | chr7_1:2632769-2632788 | Msa1004930:CDS | 40.0% | |
| ATGTGAATGAGGAAAGAAGG+AGG | + | chr7_1:2633391-2633410 | Msa1004930:CDS | 40.0% | |
| ACATTTGGTTGAGACCTTTG+TGG | - | chr7_1:2633834-2633853 | None:intergenic | 40.0% | |
| ATTGGAAGATGATGTCAGTG+AGG | + | chr7_1:2633907-2633926 | Msa1004930:CDS | 40.0% | |
| TGCTTACACGAACAAGAGCT+TGG | - | chr7_1:2632047-2632066 | None:intergenic | 45.0% | |
| GTTGCTTCCTTGAGCTCAAA+GGG | - | chr7_1:2632412-2632431 | None:intergenic | 45.0% | |
| ! | TGTTGCTTCCTTGAGCTCAA+AGG | - | chr7_1:2632413-2632432 | None:intergenic | 45.0% |
| GCCTTATCTTTGCATCCTCA+AGG | + | chr7_1:2632437-2632456 | Msa1004930:CDS | 45.0% | |
| ATCTTTGCATCCTCAAGGTG+TGG | + | chr7_1:2632442-2632461 | Msa1004930:CDS | 45.0% | |
| TGGAAATTCTCCACACCTTG+AGG | - | chr7_1:2632455-2632474 | None:intergenic | 45.0% | |
| GAGAATTTCCAGAGTTGCAC+AGG | + | chr7_1:2632464-2632483 | Msa1004930:CDS | 45.0% | |
| TCTTGTATCCTGTGCAACTC+TGG | - | chr7_1:2632475-2632494 | None:intergenic | 45.0% | |
| TGCAGCTGTTCTACAAGCTT+TGG | + | chr7_1:2633428-2633447 | Msa1004930:CDS | 45.0% | |
| TGCTTACACGAACAAGAGCT+TGG | - | chr7_1:2632047-2632066 | None:intergenic | 45.0% | |
| GTTGCTTCCTTGAGCTCAAA+GGG | - | chr7_1:2632412-2632431 | None:intergenic | 45.0% | |
| ! | TGTTGCTTCCTTGAGCTCAA+AGG | - | chr7_1:2632413-2632432 | None:intergenic | 45.0% |
| GCCTTATCTTTGCATCCTCA+AGG | + | chr7_1:2632437-2632456 | Msa1004930:CDS | 45.0% | |
| ATCTTTGCATCCTCAAGGTG+TGG | + | chr7_1:2632442-2632461 | Msa1004930:CDS | 45.0% | |
| TGGAAATTCTCCACACCTTG+AGG | - | chr7_1:2632455-2632474 | None:intergenic | 45.0% | |
| GAGAATTTCCAGAGTTGCAC+AGG | + | chr7_1:2632464-2632483 | Msa1004930:CDS | 45.0% | |
| TCTTGTATCCTGTGCAACTC+TGG | - | chr7_1:2632475-2632494 | None:intergenic | 45.0% | |
| TGCAGCTGTTCTACAAGCTT+TGG | + | chr7_1:2633428-2633447 | Msa1004930:CDS | 45.0% | |
| !! | TGAAAAATAAAAATAAAAAT+TGG | - | chr7_1:2632070-2632089 | None:intergenic | 5.0% |
| !! | TGAAAAATAAAAATAAAAAT+TGG | - | chr7_1:2632070-2632089 | None:intergenic | 5.0% |
| CACGAACAAGAGCTTGGTCA+TGG | - | chr7_1:2632041-2632060 | None:intergenic | 50.0% | |
| CACGAACAAGAGCTTGGTCA+TGG | - | chr7_1:2632041-2632060 | None:intergenic | 50.0% | |
| ! | GGAGTGTCCCTTTGAGCTCA+AGG | + | chr7_1:2632402-2632421 | Msa1004930:CDS | 55.0% |
| ! | GGAGTGTCCCTTTGAGCTCA+AGG | + | chr7_1:2632402-2632421 | Msa1004930:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 2631892 | 2633938 | 2631892 | ID=Msa1004930;Name=Msa1004930 |
| chr7_1 | mRNA | 2631892 | 2633938 | 2631892 | ID=Msa1004930-mRNA-1;Parent=Msa1004930;Name=Msa1004930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|446 |
| chr7_1 | exon | 2631892 | 2632059 | 2631892 | ID=Msa1004930-mRNA-1:exon:1077;Parent=Msa1004930-mRNA-1 |
| chr7_1 | exon | 2632157 | 2632260 | 2632157 | ID=Msa1004930-mRNA-1:exon:1078;Parent=Msa1004930-mRNA-1 |
| chr7_1 | exon | 2632402 | 2632573 | 2632402 | ID=Msa1004930-mRNA-1:exon:1079;Parent=Msa1004930-mRNA-1 |
| chr7_1 | exon | 2632668 | 2632790 | 2632668 | ID=Msa1004930-mRNA-1:exon:1080;Parent=Msa1004930-mRNA-1 |
| chr7_1 | exon | 2633165 | 2633938 | 2633165 | ID=Msa1004930-mRNA-1:exon:1081;Parent=Msa1004930-mRNA-1 |
| chr7_1 | CDS | 2631892 | 2632059 | 2631892 | ID=Msa1004930-mRNA-1:cds;Parent=Msa1004930-mRNA-1 |
| chr7_1 | CDS | 2632157 | 2632260 | 2632157 | ID=Msa1004930-mRNA-1:cds;Parent=Msa1004930-mRNA-1 |
| chr7_1 | CDS | 2632402 | 2632573 | 2632402 | ID=Msa1004930-mRNA-1:cds;Parent=Msa1004930-mRNA-1 |
| chr7_1 | CDS | 2632668 | 2632790 | 2632668 | ID=Msa1004930-mRNA-1:cds;Parent=Msa1004930-mRNA-1 |
| chr7_1 | CDS | 2633165 | 2633938 | 2633165 | ID=Msa1004930-mRNA-1:cds;Parent=Msa1004930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
