AlfalfaGEDB | Msa1005480

M. sativa cultivar zhongmu-4 / Msa1005480

KEGG: K08790|K20069
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026
PFAM: PF00069.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1005480	XP_039690476.1	66.486	185	11	1	1	134	151	335	1.83e-70	230

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1005480	sp\|Q9NBK5\|TRC_DROME	37.158	183	60	4	1	130	129	309	2.13e-23	97.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1005480	G7I4M5	66.486	185	11	1	1	134	151	335	8.75e-71	230

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0400620	Msa1005480	0.811246	7.704424e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1005480	MtrunA17_Chr1g0167311	66.486	185	11	1	1	134	151	335	1.68e-74	230
Msa1005480	MtrunA17_Chr1g0167351	62.983	181	16	1	1	130	146	326	1.84e-67	212
Msa1005480	MtrunA17_Chr1g0187581	57.459	181	25	3	1	130	153	332	2.38e-59	191
Msa1005480	MtrunA17_Chr1g0183651	53.039	181	32	3	1	130	156	334	2.81e-53	176
Msa1005480	MtrunA17_Chr7g0261491	53.591	181	31	3	1	130	156	334	1.05e-52	174
Msa1005480	MtrunA17_Chr2g0299781	43.979	191	43	5	1	130	149	336	1.31e-36	130
Msa1005480	MtrunA17_Chr3g0135951	42.857	189	48	4	1	130	130	317	2.64e-36	129
Msa1005480	MtrunA17_Chr1g0153321	43.478	184	47	4	1	130	144	324	8.68e-34	123
Msa1005480	MtrunA17_Chr6g0478601	40.816	98	43	4	37	132	234	318	5.76e-13	64.7
Msa1005480	MtrunA17_Chr5g0428981	41.346	104	39	6	37	134	886	973	8.75e-12	61.2
Msa1005480	MtrunA17_Chr4g0018201	41.346	104	39	6	37	134	882	969	9.63e-12	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1005480	AT4G14350.3	54.144	181	31	2	1	130	155	334	2.98e-54	178
Msa1005480	AT4G14350.2	54.144	181	31	2	1	130	155	334	3.79e-54	178
Msa1005480	AT4G14350.1	54.144	181	31	2	1	130	155	334	3.79e-54	178
Msa1005480	AT4G14350.4	54.144	181	31	2	1	130	155	334	3.79e-54	178
Msa1005480	AT3G23310.1	54.098	183	30	3	1	130	156	337	9.08e-52	172
Msa1005480	AT1G03920.2	51.381	181	35	3	1	130	60	238	4.86e-49	163
Msa1005480	AT1G03920.1	51.381	181	35	3	1	130	173	351	8.65e-48	162
Msa1005480	AT1G03920.3	51.381	181	35	3	1	130	173	351	8.65e-48	162
Msa1005480	AT2G20470.3	49.724	181	37	3	1	130	160	337	1.16e-46	158
Msa1005480	AT2G20470.2	49.724	181	37	3	1	130	160	337	2.10e-46	158
Msa1005480	AT2G20470.1	49.724	181	37	3	1	130	160	337	2.10e-46	158
Msa1005480	AT2G19400.1	43.523	193	49	4	1	134	141	332	5.01e-38	135
Msa1005480	AT4G33080.2	43.915	189	46	4	1	130	130	317	1.12e-36	131
Msa1005480	AT4G33080.1	43.915	189	46	4	1	130	130	317	1.47e-36	130
Msa1005480	AT5G09890.2	45.455	187	41	6	1	130	138	320	5.88e-34	124
Msa1005480	AT5G09890.1	44.385	187	43	5	1	130	138	320	3.93e-33	121
Msa1005480	AT1G30640.3	42.703	185	50	4	1	130	63	246	3.08e-32	119
Msa1005480	AT1G30640.2	42.703	185	50	4	1	130	156	339	2.58e-31	117
Msa1005480	AT1G30640.1	42.703	185	50	4	1	130	156	339	2.58e-31	117
Msa1005480	AT3G17850.1	40.404	99	44	4	37	133	1005	1090	5.96e-13	65.1
Msa1005480	AT1G45160.1	40.000	100	43	4	37	134	793	877	7.69e-13	64.7
Msa1005480	AT1G45160.2	40.000	100	43	4	37	134	793	877	8.41e-13	64.7
Msa1005480	AT1G48490.4	40.206	97	41	3	37	133	952	1031	2.74e-12	63.2
Msa1005480	AT1G48490.3	40.206	97	41	3	37	133	951	1030	2.76e-12	63.2
Msa1005480	AT1G48490.2	40.206	97	41	3	37	133	951	1030	2.76e-12	63.2
Msa1005480	AT1G48490.1	40.206	97	41	3	37	133	951	1030	2.76e-12	63.2
Msa1005480	AT5G62310.1	37.234	94	48	2	37	130	877	959	3.94e-12	62.8

Find 32 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CACGTGAAATTATCAGATTT+TGG	0.253070	7_1:+3125720	Msa1005480:CDS
CCAGTTGCTGCTGTTGTGAT+TGG	0.310492	7_1:-3125848	None:intergenic
CAAGCCCGACAACTTGCTTC+TGG	0.332235	7_1:+3125686	Msa1005480:CDS
AACTTCTGGAGCAATATAAT+CGG	0.385695	7_1:-3126321	None:intergenic
ATTGCGAAAGAGTTAAATAA+TGG	0.386315	7_1:+3125032	Msa1005480:five_prime_UTR
GCTAGACTGCAGTAACCTTC+AGG	0.390289	7_1:+3125755	Msa1005480:CDS
CCTCTCTTCAGAATAACTTC+TGG	0.412241	7_1:-3126335	None:intergenic
AAGCAAGTTCATCACTTTGA+AGG	0.415965	7_1:-3125815	None:intergenic
CCAATCACAACAGCAGCAAC+TGG	0.428613	7_1:+3125848	Msa1005480:CDS
CTATCCAGAAGCAAGTTGTC+GGG	0.469273	7_1:-3125690	None:intergenic
CTTTATTGTTCCTTTCAAGA+TGG	0.472271	7_1:+3125266	Msa1005480:CDS
TGCTATCAACTTCTGCAAGA+AGG	0.478344	7_1:-3125229	None:intergenic
GGGTGTTCCAACCGTAGAAT+AGG	0.479245	7_1:-3126300	None:intergenic
TCTAATGGAGTTAACATAAG+TGG	0.486303	7_1:+3125789	Msa1005480:CDS
GATATTGCAGGCCTATTCTA+CGG	0.491719	7_1:+3126289	Msa1005480:intron
TGCTGCTGTTGTGATTGGTT+AGG	0.492962	7_1:-3125843	None:intergenic
AGCAGCAACTGGAGCATTCG+CGG	0.498074	7_1:+3125859	Msa1005480:CDS
TAAATACTCGCCATCTTGAA+AGG	0.513200	7_1:-3125276	None:intergenic
TCTATCCAGAAGCAAGTTGT+CGG	0.513902	7_1:-3125691	None:intergenic
AGCATCTCTGATTTAACTCA+CGG	0.528343	7_1:-3125090	None:intergenic
TTGCAGGCCTATTCTACGGT+TGG	0.530006	7_1:+3126293	Msa1005480:intron
ACTTCTGGAGCAATATAATC+GGG	0.545377	7_1:-3126320	None:intergenic
AACTTGCTTCTGGATAGAAA+TGG	0.545939	7_1:+3125696	Msa1005480:CDS
AGAGATGCTTTGTAGAGGAC+AGG	0.547901	7_1:+3125104	Msa1005480:exon
TTGAATATGTCAAATCTGAA+AGG	0.568344	7_1:+3125204	Msa1005480:CDS
CCAGAAGTTATTCTGAAGAG+AGG	0.595321	7_1:+3126335	Msa1005480:CDS
CAGAAGTTATTCTGAAGAGA+GGG	0.602815	7_1:+3126336	Msa1005480:CDS
TCTTTCGCAATGTGAAACTC+CGG	0.605862	7_1:-3125020	None:intergenic
TTCGCAATGTGAAACTCCGG+AGG	0.606544	7_1:-3125017	None:intergenic
TGAAGGTTACTGCAGTCTAG+CGG	0.630065	7_1:-3125753	None:intergenic
AAATCAGAGATGCTTTGTAG+AGG	0.633027	7_1:+3125099	Msa1005480:exon
TCGCAATGTGAAACTCCGGA+GGG	0.678985	7_1:-3125016	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAACATAATTATATTCAT+AGG	+	chr7_1:3125425-3125444	Msa1005480:intron	10.0%
!!!	TTTTTATTATAACTGAAAAA+AGG	-	chr7_1:3126057-3126076	None:intergenic	10.0%
!!	ATAAACATAATTATATTCAT+AGG	+	chr7_1:3125425-3125444	Msa1005480:intron	10.0%
!!!	TTTTTATTATAACTGAAAAA+AGG	-	chr7_1:3126057-3126076	None:intergenic	10.0%
!!!	ATTATTTTCTTTTACTTATC+AGG	+	chr7_1:3125159-3125178	Msa1005480:intron	15.0%
!!	AGTATTTATATCTCATATAA+TGG	+	chr7_1:3125291-3125310	Msa1005480:intron	15.0%
!!	TAGCAAACTTTATTATAAAA+CGG	+	chr7_1:3125957-3125976	Msa1005480:intron	15.0%
!!	ATTTACATCATATATCAATT+TGG	+	chr7_1:3126160-3126179	Msa1005480:intron	15.0%
!!	TTTACATCATATATCAATTT+GGG	+	chr7_1:3126161-3126180	Msa1005480:intron	15.0%
!!!	ATTATTTTCTTTTACTTATC+AGG	+	chr7_1:3125159-3125178	Msa1005480:intron	15.0%
!!	AGTATTTATATCTCATATAA+TGG	+	chr7_1:3125291-3125310	Msa1005480:intron	15.0%
!!	TAGCAAACTTTATTATAAAA+CGG	+	chr7_1:3125957-3125976	Msa1005480:intron	15.0%
!!	ATTTACATCATATATCAATT+TGG	+	chr7_1:3126160-3126179	Msa1005480:intron	15.0%
!!	TTTACATCATATATCAATTT+GGG	+	chr7_1:3126161-3126180	Msa1005480:intron	15.0%
!!!	TCTCTTGTTATATTTTTGTT+TGG	+	chr7_1:3126114-3126133	Msa1005480:intron	20.0%
!!!	TCTCTTGTTATATTTTTGTT+TGG	+	chr7_1:3126114-3126133	Msa1005480:intron	20.0%
!	ATTGCGAAAGAGTTAAATAA+TGG	+	chr7_1:3125032-3125051	Msa1005480:five_prime_UTR	25.0%
!!!	GTGCTTTTATGTTTTTGATT+AGG	+	chr7_1:3125181-3125200	Msa1005480:intron	25.0%
!	TTGAATATGTCAAATCTGAA+AGG	+	chr7_1:3125204-3125223	Msa1005480:CDS	25.0%
!	ATGTTTATGAATAGACTCTA+TGG	-	chr7_1:3125413-3125432	None:intergenic	25.0%
!	AATAGTGATTACAGATTAAG+CGG	-	chr7_1:3125452-3125471	None:intergenic	25.0%
!	GCTACAATCTTATACTAAAT+AGG	-	chr7_1:3125487-3125506	None:intergenic	25.0%
!	AGTGATTTCGTTGAAAATAA+CGG	-	chr7_1:3125529-3125548	None:intergenic	25.0%
!!	AATTTTCAGTGTTAGATTGT+AGG	+	chr7_1:3125559-3125578	Msa1005480:intron	25.0%
!!	ATTTTCAGTGTTAGATTGTA+GGG	+	chr7_1:3125560-3125579	Msa1005480:intron	25.0%
!	TATGATTACTTTGTTCAAAG+CGG	+	chr7_1:3126025-3126044	Msa1005480:intron	25.0%
!!	TTATAACTGAAAAAAGGTGT+AGG	-	chr7_1:3126051-3126070	None:intergenic	25.0%
!	CATTATTCTTTCGTTATGTT+TGG	+	chr7_1:3126083-3126102	Msa1005480:intron	25.0%
!	AAAGAGAGAATAGTCTTTAA+AGG	-	chr7_1:3126206-3126225	None:intergenic	25.0%
!!!	TATTCTCTCTTTTGATTGTA+TGG	+	chr7_1:3126214-3126233	Msa1005480:intron	25.0%
!	GTGATTGGTATAATAGTATA+TGG	+	chr7_1:3126372-3126391	Msa1005480:intron	25.0%
!	ATTGCGAAAGAGTTAAATAA+TGG	+	chr7_1:3125032-3125051	Msa1005480:five_prime_UTR	25.0%
!!!	GTGCTTTTATGTTTTTGATT+AGG	+	chr7_1:3125181-3125200	Msa1005480:intron	25.0%
!	TTGAATATGTCAAATCTGAA+AGG	+	chr7_1:3125204-3125223	Msa1005480:CDS	25.0%
!	ATGTTTATGAATAGACTCTA+TGG	-	chr7_1:3125413-3125432	None:intergenic	25.0%
!	AATAGTGATTACAGATTAAG+CGG	-	chr7_1:3125452-3125471	None:intergenic	25.0%
!	GCTACAATCTTATACTAAAT+AGG	-	chr7_1:3125487-3125506	None:intergenic	25.0%
!	AGTGATTTCGTTGAAAATAA+CGG	-	chr7_1:3125529-3125548	None:intergenic	25.0%
!!	AATTTTCAGTGTTAGATTGT+AGG	+	chr7_1:3125559-3125578	Msa1005480:intron	25.0%
!!	ATTTTCAGTGTTAGATTGTA+GGG	+	chr7_1:3125560-3125579	Msa1005480:intron	25.0%
!	TATGATTACTTTGTTCAAAG+CGG	+	chr7_1:3126025-3126044	Msa1005480:intron	25.0%
!!	TTATAACTGAAAAAAGGTGT+AGG	-	chr7_1:3126051-3126070	None:intergenic	25.0%
!	CATTATTCTTTCGTTATGTT+TGG	+	chr7_1:3126083-3126102	Msa1005480:intron	25.0%
!	AAAGAGAGAATAGTCTTTAA+AGG	-	chr7_1:3126206-3126225	None:intergenic	25.0%
!!!	TATTCTCTCTTTTGATTGTA+TGG	+	chr7_1:3126214-3126233	Msa1005480:intron	25.0%
!	GTGATTGGTATAATAGTATA+TGG	+	chr7_1:3126372-3126391	Msa1005480:intron	25.0%
	CTTTATTGTTCCTTTCAAGA+TGG	+	chr7_1:3125266-3125285	Msa1005480:CDS	30.0%
!	CAACGAAATCACTATTGTTT+TGG	+	chr7_1:3125536-3125555	Msa1005480:intron	30.0%
	GATCTTGAATACTGATCATT+CGG	+	chr7_1:3125602-3125621	Msa1005480:intron	30.0%
!	CACGTGAAATTATCAGATTT+TGG	+	chr7_1:3125720-3125739	Msa1005480:CDS	30.0%
!	TAGATAAGTCTTTTTCCTGA+AGG	-	chr7_1:3125773-3125792	None:intergenic	30.0%
	CAGGAAAAAGACTTATCTAA+TGG	+	chr7_1:3125774-3125793	Msa1005480:CDS	30.0%
	TCTAATGGAGTTAACATAAG+TGG	+	chr7_1:3125789-3125808	Msa1005480:CDS	30.0%
	TTCTATCTTTGTGATATTGC+AGG	+	chr7_1:3126277-3126296	Msa1005480:intron	30.0%
!!	AACTTCTGGAGCAATATAAT+CGG	-	chr7_1:3126324-3126343	None:intergenic	30.0%
	GAATAAGTGAATAACTTCTC+AGG	+	chr7_1:3126426-3126445	Msa1005480:intron	30.0%
	CTTTATTGTTCCTTTCAAGA+TGG	+	chr7_1:3125266-3125285	Msa1005480:CDS	30.0%
!	CAACGAAATCACTATTGTTT+TGG	+	chr7_1:3125536-3125555	Msa1005480:intron	30.0%
	GATCTTGAATACTGATCATT+CGG	+	chr7_1:3125602-3125621	Msa1005480:intron	30.0%
!	CACGTGAAATTATCAGATTT+TGG	+	chr7_1:3125720-3125739	Msa1005480:CDS	30.0%
!	TAGATAAGTCTTTTTCCTGA+AGG	-	chr7_1:3125773-3125792	None:intergenic	30.0%
	CAGGAAAAAGACTTATCTAA+TGG	+	chr7_1:3125774-3125793	Msa1005480:CDS	30.0%
	TCTAATGGAGTTAACATAAG+TGG	+	chr7_1:3125789-3125808	Msa1005480:CDS	30.0%
	TTCTATCTTTGTGATATTGC+AGG	+	chr7_1:3126277-3126296	Msa1005480:intron	30.0%
!!	AACTTCTGGAGCAATATAAT+CGG	-	chr7_1:3126324-3126343	None:intergenic	30.0%
	GAATAAGTGAATAACTTCTC+AGG	+	chr7_1:3126426-3126445	Msa1005480:intron	30.0%
	AGCATCTCTGATTTAACTCA+CGG	-	chr7_1:3125093-3125112	None:intergenic	35.0%
	AAATCAGAGATGCTTTGTAG+AGG	+	chr7_1:3125099-3125118	Msa1005480:exon	35.0%
	TAAATACTCGCCATCTTGAA+AGG	-	chr7_1:3125279-3125298	None:intergenic	35.0%
!	CATATAATGGAGTATCTACC+CGG	+	chr7_1:3125304-3125323	Msa1005480:intron	35.0%
!	ATATGATGACGTTGTTGATG+CGG	+	chr7_1:3125332-3125351	Msa1005480:intron	35.0%
	TGAAGCTAAGTTCTATATCG+AGG	+	chr7_1:3125375-3125394	Msa1005480:intron	35.0%
!	AACTTGCTTCTGGATAGAAA+TGG	+	chr7_1:3125696-3125715	Msa1005480:CDS	35.0%
	AAGCAAGTTCATCACTTTGA+AGG	-	chr7_1:3125818-3125837	None:intergenic	35.0%
	CTTTCGTTATGTTTGGACTT+CGG	+	chr7_1:3126090-3126109	Msa1005480:intron	35.0%
!!	ACTTCTGGAGCAATATAATC+GGG	-	chr7_1:3126323-3126342	None:intergenic	35.0%
!	CAGAAGTTATTCTGAAGAGA+GGG	+	chr7_1:3126336-3126355	Msa1005480:CDS	35.0%
	AGCATCTCTGATTTAACTCA+CGG	-	chr7_1:3125093-3125112	None:intergenic	35.0%
	AAATCAGAGATGCTTTGTAG+AGG	+	chr7_1:3125099-3125118	Msa1005480:exon	35.0%
	TAAATACTCGCCATCTTGAA+AGG	-	chr7_1:3125279-3125298	None:intergenic	35.0%
!	CATATAATGGAGTATCTACC+CGG	+	chr7_1:3125304-3125323	Msa1005480:intron	35.0%
!	ATATGATGACGTTGTTGATG+CGG	+	chr7_1:3125332-3125351	Msa1005480:intron	35.0%
	TGAAGCTAAGTTCTATATCG+AGG	+	chr7_1:3125375-3125394	Msa1005480:intron	35.0%
!	AACTTGCTTCTGGATAGAAA+TGG	+	chr7_1:3125696-3125715	Msa1005480:CDS	35.0%
	AAGCAAGTTCATCACTTTGA+AGG	-	chr7_1:3125818-3125837	None:intergenic	35.0%
	CTTTCGTTATGTTTGGACTT+CGG	+	chr7_1:3126090-3126109	Msa1005480:intron	35.0%
!!	ACTTCTGGAGCAATATAATC+GGG	-	chr7_1:3126323-3126342	None:intergenic	35.0%
!	CAGAAGTTATTCTGAAGAGA+GGG	+	chr7_1:3126336-3126355	Msa1005480:CDS	35.0%
!	AGATGACTTTCTTTTCCCTC+CGG	+	chr7_1:3125001-3125020	Msa1005480:five_prime_UTR	40.0%
	TCTTTCGCAATGTGAAACTC+CGG	-	chr7_1:3125023-3125042	None:intergenic	40.0%
	TGCTATCAACTTCTGCAAGA+AGG	-	chr7_1:3125232-3125251	None:intergenic	40.0%
	GGGTACTTAACTTTACGACA+TGG	+	chr7_1:3125580-3125599	Msa1005480:intron	40.0%
	CTTGAATACTGATCATTCGG+AGG	+	chr7_1:3125605-3125624	Msa1005480:intron	40.0%
	TCTATCCAGAAGCAAGTTGT+CGG	-	chr7_1:3125694-3125713	None:intergenic	40.0%
	GAAAAATCGAAGCAGAATGC+TGG	+	chr7_1:3125881-3125900	Msa1005480:CDS	40.0%
	GATATTGCAGGCCTATTCTA+CGG	+	chr7_1:3126289-3126308	Msa1005480:intron	40.0%
	CCTCTCTTCAGAATAACTTC+TGG	-	chr7_1:3126338-3126357	None:intergenic	40.0%
!	CCAGAAGTTATTCTGAAGAG+AGG	+	chr7_1:3126335-3126354	Msa1005480:CDS	40.0%
!	GTTATTCTGAAGAGAGGGTA+TGG	+	chr7_1:3126341-3126360	Msa1005480:intron	40.0%
!	AGTATATGGCGTTGAAAGCT+TGG	+	chr7_1:3126386-3126405	Msa1005480:intron	40.0%
!	AGATGACTTTCTTTTCCCTC+CGG	+	chr7_1:3125001-3125020	Msa1005480:five_prime_UTR	40.0%
	TCTTTCGCAATGTGAAACTC+CGG	-	chr7_1:3125023-3125042	None:intergenic	40.0%
	TGCTATCAACTTCTGCAAGA+AGG	-	chr7_1:3125232-3125251	None:intergenic	40.0%
	GGGTACTTAACTTTACGACA+TGG	+	chr7_1:3125580-3125599	Msa1005480:intron	40.0%
	CTTGAATACTGATCATTCGG+AGG	+	chr7_1:3125605-3125624	Msa1005480:intron	40.0%
	TCTATCCAGAAGCAAGTTGT+CGG	-	chr7_1:3125694-3125713	None:intergenic	40.0%
	GAAAAATCGAAGCAGAATGC+TGG	+	chr7_1:3125881-3125900	Msa1005480:CDS	40.0%
	GATATTGCAGGCCTATTCTA+CGG	+	chr7_1:3126289-3126308	Msa1005480:intron	40.0%
	CCTCTCTTCAGAATAACTTC+TGG	-	chr7_1:3126338-3126357	None:intergenic	40.0%
!	CCAGAAGTTATTCTGAAGAG+AGG	+	chr7_1:3126335-3126354	Msa1005480:CDS	40.0%
!	GTTATTCTGAAGAGAGGGTA+TGG	+	chr7_1:3126341-3126360	Msa1005480:intron	40.0%
!	AGTATATGGCGTTGAAAGCT+TGG	+	chr7_1:3126386-3126405	Msa1005480:intron	40.0%
	AGAGATGCTTTGTAGAGGAC+AGG	+	chr7_1:3125104-3125123	Msa1005480:exon	45.0%
	GCTTTGTAGAGGACAGGTAT+TGG	+	chr7_1:3125110-3125129	Msa1005480:intron	45.0%
!	ATAATGGAGTATCTACCCGG+TGG	+	chr7_1:3125307-3125326	Msa1005480:intron	45.0%
	AACGTCATCATATCTCCACC+GGG	-	chr7_1:3125325-3125344	None:intergenic	45.0%
	CAACGTCATCATATCTCCAC+CGG	-	chr7_1:3125326-3125345	None:intergenic	45.0%
	CTATCCAGAAGCAAGTTGTC+GGG	-	chr7_1:3125693-3125712	None:intergenic	45.0%
	TGAAGGTTACTGCAGTCTAG+CGG	-	chr7_1:3125756-3125775	None:intergenic	45.0%
!	TGCTGCTGTTGTGATTGGTT+AGG	-	chr7_1:3125846-3125865	None:intergenic	45.0%
	AGAGATGCTTTGTAGAGGAC+AGG	+	chr7_1:3125104-3125123	Msa1005480:exon	45.0%
	GCTTTGTAGAGGACAGGTAT+TGG	+	chr7_1:3125110-3125129	Msa1005480:intron	45.0%
!	ATAATGGAGTATCTACCCGG+TGG	+	chr7_1:3125307-3125326	Msa1005480:intron	45.0%
	AACGTCATCATATCTCCACC+GGG	-	chr7_1:3125325-3125344	None:intergenic	45.0%
	CAACGTCATCATATCTCCAC+CGG	-	chr7_1:3125326-3125345	None:intergenic	45.0%
	CTATCCAGAAGCAAGTTGTC+GGG	-	chr7_1:3125693-3125712	None:intergenic	45.0%
	TGAAGGTTACTGCAGTCTAG+CGG	-	chr7_1:3125756-3125775	None:intergenic	45.0%
!	TGCTGCTGTTGTGATTGGTT+AGG	-	chr7_1:3125846-3125865	None:intergenic	45.0%
	TCGCAATGTGAAACTCCGGA+GGG	-	chr7_1:3125019-3125038	None:intergenic	50.0%
	TTCGCAATGTGAAACTCCGG+AGG	-	chr7_1:3125020-3125039	None:intergenic	50.0%
	GCTAGACTGCAGTAACCTTC+AGG	+	chr7_1:3125755-3125774	Msa1005480:CDS	50.0%
	CCAGTTGCTGCTGTTGTGAT+TGG	-	chr7_1:3125851-3125870	None:intergenic	50.0%
	CCAATCACAACAGCAGCAAC+TGG	+	chr7_1:3125848-3125867	Msa1005480:CDS	50.0%
	TTGCAGGCCTATTCTACGGT+TGG	+	chr7_1:3126293-3126312	Msa1005480:intron	50.0%
	GGGTGTTCCAACCGTAGAAT+AGG	-	chr7_1:3126303-3126322	None:intergenic	50.0%
	GGTATGGCGTGGAATGTGAT+TGG	+	chr7_1:3126357-3126376	Msa1005480:intron	50.0%
	TCGCAATGTGAAACTCCGGA+GGG	-	chr7_1:3125019-3125038	None:intergenic	50.0%
	TTCGCAATGTGAAACTCCGG+AGG	-	chr7_1:3125020-3125039	None:intergenic	50.0%
	GCTAGACTGCAGTAACCTTC+AGG	+	chr7_1:3125755-3125774	Msa1005480:CDS	50.0%
	CCAGTTGCTGCTGTTGTGAT+TGG	-	chr7_1:3125851-3125870	None:intergenic	50.0%
	CCAATCACAACAGCAGCAAC+TGG	+	chr7_1:3125848-3125867	Msa1005480:CDS	50.0%
	TTGCAGGCCTATTCTACGGT+TGG	+	chr7_1:3126293-3126312	Msa1005480:intron	50.0%
	GGGTGTTCCAACCGTAGAAT+AGG	-	chr7_1:3126303-3126322	None:intergenic	50.0%
	GGTATGGCGTGGAATGTGAT+TGG	+	chr7_1:3126357-3126376	Msa1005480:intron	50.0%
!	CAAGCCCGACAACTTGCTTC+TGG	+	chr7_1:3125686-3125705	Msa1005480:CDS	55.0%
!	AGCAGCAACTGGAGCATTCG+CGG	+	chr7_1:3125859-3125878	Msa1005480:CDS	55.0%
!	TCTGAAGAGAGGGTATGGCG+TGG	+	chr7_1:3126346-3126365	Msa1005480:intron	55.0%
!	CAAGCCCGACAACTTGCTTC+TGG	+	chr7_1:3125686-3125705	Msa1005480:CDS	55.0%
!	AGCAGCAACTGGAGCATTCG+CGG	+	chr7_1:3125859-3125878	Msa1005480:CDS	55.0%
!	TCTGAAGAGAGGGTATGGCG+TGG	+	chr7_1:3126346-3126365	Msa1005480:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	3124980	3126469	3124980	ID=Msa1005480;Name=Msa1005480
chr7_1	mRNA	3124980	3126469	3124980	ID=Msa1005480-mRNA-1;Parent=Msa1005480;Name=Msa1005480-mRNA-1;_AED=0.26;_eAED=0.26;_QI=128\|0.25\|0.2\|0.6\|0.75\|1\|5\|0\|136
chr7_1	exon	3124980	3125125	3124980	ID=Msa1005480-mRNA-1:exon:1321;Parent=Msa1005480-mRNA-1
chr7_1	exon	3125203	3125291	3125203	ID=Msa1005480-mRNA-1:exon:1322;Parent=Msa1005480-mRNA-1
chr7_1	exon	3125680	3125902	3125680	ID=Msa1005480-mRNA-1:exon:1323;Parent=Msa1005480-mRNA-1
chr7_1	exon	3126299	3126357	3126299	ID=Msa1005480-mRNA-1:exon:1324;Parent=Msa1005480-mRNA-1
chr7_1	exon	3126448	3126469	3126448	ID=Msa1005480-mRNA-1:exon:1325;Parent=Msa1005480-mRNA-1
chr7_1	five_prime_UTR	3124980	3125107	3124980	ID=Msa1005480-mRNA-1:five_prime_utr;Parent=Msa1005480-mRNA-1
chr7_1	CDS	3125108	3125125	3125108	ID=Msa1005480-mRNA-1:cds;Parent=Msa1005480-mRNA-1
chr7_1	CDS	3125203	3125291	3125203	ID=Msa1005480-mRNA-1:cds;Parent=Msa1005480-mRNA-1
chr7_1	CDS	3125680	3125902	3125680	ID=Msa1005480-mRNA-1:cds;Parent=Msa1005480-mRNA-1
chr7_1	CDS	3126299	3126357	3126299	ID=Msa1005480-mRNA-1:cds;Parent=Msa1005480-mRNA-1
chr7_1	CDS	3126448	3126469	3126448	ID=Msa1005480-mRNA-1:cds;Parent=Msa1005480-mRNA-1

Gene Sequence

>Msa1005480

ATGCTTTGTAGAGGACAGGTTGAATATGTCAAATCTGAAAGGAACCTTCTTGCAGAAGTTGATAGCAATTGCATTGTAAAACTTTATTGTTCCTTTCAAGATGGCGAAGATATCAAGCCCGACAACTTGCTTCTGGATAGAAATGGTCACGTGAAATTATCAGATTTTGGATTATGTAAGCCGCTAGACTGCAGTAACCTTCAGGAAAAAGACTTATCTAATGGAGTTAACATAAGTGGAGTCCTTCAAAGTGATGAACTTGCTTTATCTCCTAACCAATCACAACAGCAGCAACTGGAGCATTCGCGGAAAAATCGAAGCAGAATGCTGGCCTATTCTACGGTTGGAACACCCGATTATATTGCTCCAGAAGTTATTCTGAAGAGAGGGTCTGCTGCTGATAATCTCTAA

Protein sequence

>Msa1005480

MLCRGQVEYVKSERNLLAEVDSNCIVKLYCSFQDGEDIKPDNLLLDRNGHVKLSDFGLCKPLDCSNLQEKDLSNGVNISGVLQSDELALSPNQSQQQQLEHSRKNRSRMLAYSTVGTPDYIAPEVILKRGSAADNL*