Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006140 | XP_003621137.1 | 94.615 | 260 | 13 | 1 | 1 | 260 | 1 | 259 | 5.69e-167 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006140 | sp|P50846|ALKH_BACSU | 28.824 | 170 | 119 | 2 | 54 | 223 | 9 | 176 | 6.35e-22 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006140 | A2Q5T0 | 94.615 | 260 | 13 | 1 | 1 | 260 | 1 | 259 | 2.72e-167 | 472 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1006140 | Msa1048330 | 0.808193 | 3.492822e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006140 | MtrunA17_Chr7g0216861 | 94.262 | 122 | 7 | 0 | 91 | 212 | 1 | 122 | 3.08e-81 | 240 |
| Msa1006140 | MtrunA17_Chr7g0216851 | 84.286 | 70 | 10 | 1 | 1 | 70 | 1 | 69 | 1.67e-33 | 117 |
| Msa1006140 | MtrunA17_Chr7g0216871 | 97.959 | 49 | 1 | 0 | 212 | 260 | 1 | 49 | 5.16e-28 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGTTTATCAGAATATTT+TGG | 0.186391 | 7_1:+4792944 | Msa1006140:intron |
| TGTCTTCTTCAACTTCTTCT+AGG | 0.228202 | 7_1:+4789633 | Msa1006140:CDS |
| TGTTTCTATGGTTGCTTCTC+AGG | 0.260595 | 7_1:+4794304 | Msa1006140:CDS |
| GCCCTTTCCTCATGTTTCTA+TGG | 0.281002 | 7_1:+4794292 | Msa1006140:CDS |
| TTTCAAACCTTAACATTTGC+AGG | 0.284968 | 7_1:-4792748 | None:intergenic |
| CTTTGCCAAATCAAGAATTC+TGG | 0.302973 | 7_1:+4789740 | Msa1006140:CDS |
| GCACAATCTGCTACCTTGTT+AGG | 0.309183 | 7_1:+4795086 | Msa1006140:CDS |
| TTCGGTTGGAGTCATTGTTC+CGG | 0.335610 | 7_1:-4793000 | None:intergenic |
| CATACCCCTAGAGTTATTCT+AGG | 0.335769 | 7_1:-4791910 | None:intergenic |
| CATGTAACCCTACTAGGATT+AGG | 0.343280 | 7_1:-4789662 | None:intergenic |
| CTTAGGTTGGAACTGTTCTC+AGG | 0.354628 | 7_1:+4792674 | Msa1006140:intron |
| CAAATTGTTTGTAGATTCAA+TGG | 0.355850 | 7_1:+4794962 | Msa1006140:intron |
| CATTTCTATAAATATAAATA+TGG | 0.363350 | 7_1:+4795131 | Msa1006140:three_prime_UTR |
| CATGAGGAAAGGGCTTCTTC+AGG | 0.364481 | 7_1:-4794283 | None:intergenic |
| TCGGTTGGAGTCATTGTTCC+GGG | 0.368934 | 7_1:-4792999 | None:intergenic |
| TGACACCAGAATTCTTGATT+TGG | 0.369037 | 7_1:-4789745 | None:intergenic |
| AATGAGTCCTGCAAATGTTA+AGG | 0.388475 | 7_1:+4792741 | Msa1006140:CDS |
| ACTTTGCATGTAACCCTACT+AGG | 0.411670 | 7_1:-4789668 | None:intergenic |
| TTGACATTGGTACATGGTTA+AGG | 0.413248 | 7_1:-4789606 | None:intergenic |
| AATCCTCCGAGAGCTGAAAC+TGG | 0.426974 | 7_1:-4794245 | None:intergenic |
| ATATGATGCAGGTGCTAAAA+TGG | 0.441229 | 7_1:+4793301 | Msa1006140:CDS |
| ATTTATCCAGTTTCAGCTCT+CGG | 0.460685 | 7_1:+4794239 | Msa1006140:CDS |
| GCTTCTCAGGGAATAACAAT+AGG | 0.467533 | 7_1:+4794317 | Msa1006140:CDS |
| TAGGTAACCAAGCTGTGAAT+AGG | 0.468914 | 7_1:+4795105 | Msa1006140:CDS |
| AGATGCTATATTTGATAAAG+AGG | 0.471242 | 7_1:+4795025 | Msa1006140:CDS |
| GTTTCTATGGTTGCTTCTCA+GGG | 0.474075 | 7_1:+4794305 | Msa1006140:CDS |
| GCTGCAAATGCTGCAATAGC+AGG | 0.475105 | 7_1:+4791156 | Msa1006140:CDS |
| GTCTACCCCAGGTGTGTTTG+AGG | 0.485996 | 7_1:+4791779 | Msa1006140:CDS |
| ATGAGGAAAGGGCTTCTTCA+GGG | 0.489825 | 7_1:-4794282 | None:intergenic |
| CACAGCTTGGTTACCTAACA+AGG | 0.491515 | 7_1:-4795099 | None:intergenic |
| TTGCTTGTCTCAGAGCCAAT+AGG | 0.494076 | 7_1:+4789768 | Msa1006140:CDS |
| GAGCATCCTAGAATAACTCT+AGG | 0.497393 | 7_1:+4791904 | Msa1006140:CDS |
| ACCATAGAAACATGAGGAAA+GGG | 0.499530 | 7_1:-4794293 | None:intergenic |
| TGGAACTGTTCTCAGGATTG+AGG | 0.505369 | 7_1:+4792681 | Msa1006140:CDS |
| AAGTTGACACTTACTTCGGT+TGG | 0.512158 | 7_1:-4793014 | None:intergenic |
| AGCATCCTAGAATAACTCTA+GGG | 0.513150 | 7_1:+4791905 | Msa1006140:CDS |
| CAACCATTGACATTGGTACA+TGG | 0.515672 | 7_1:-4789612 | None:intergenic |
| ATATAGTGCAGAAGTGGCAT+TGG | 0.521761 | 7_1:+4791131 | Msa1006140:intron |
| AATGTCACCTATTCACAGCT+TGG | 0.522113 | 7_1:-4795112 | None:intergenic |
| TAACCATGTACCAATGTCAA+TGG | 0.531872 | 7_1:+4789609 | Msa1006140:CDS |
| GGCGTCTTCCTAATCCTAGT+AGG | 0.533577 | 7_1:+4789654 | Msa1006140:CDS |
| TGTGTAGGTTCTACAGAAGC+TGG | 0.555663 | 7_1:+4791876 | Msa1006140:intron |
| AACCATAGAAACATGAGGAA+AGG | 0.555765 | 7_1:-4794294 | None:intergenic |
| GCGTCTTCCTAATCCTAGTA+GGG | 0.563651 | 7_1:+4789655 | Msa1006140:CDS |
| ACTTACATATAGTGCAGAAG+TGG | 0.568106 | 7_1:+4791125 | Msa1006140:intron |
| ACTCATTAGAAATTTAGCTC+CGG | 0.575470 | 7_1:-4792725 | None:intergenic |
| TCTATAAATATAAATATGGA+AGG | 0.580727 | 7_1:+4795135 | Msa1006140:three_prime_UTR |
| TTACCAACCTCAAACACACC+TGG | 0.587072 | 7_1:-4791786 | None:intergenic |
| AAGAAGACAACCATTGACAT+TGG | 0.591717 | 7_1:-4789619 | None:intergenic |
| ATTGTTTGTAGATTCAATGG+AGG | 0.594558 | 7_1:+4794965 | Msa1006140:intron |
| TACCAACCTCAAACACACCT+GGG | 0.595622 | 7_1:-4791785 | None:intergenic |
| GCAAATGCTGCAATAGCAGG+TGG | 0.601354 | 7_1:+4791159 | Msa1006140:CDS |
| ATATTGTCTGCATATGATGC+AGG | 0.602331 | 7_1:+4793290 | Msa1006140:CDS |
| GGTTCTACAGAAGCTGGTGA+AGG | 0.604287 | 7_1:+4791882 | Msa1006140:intron |
| GAGATTGTGATGTCTACCCC+AGG | 0.608316 | 7_1:+4791768 | Msa1006140:CDS |
| TGCAGGTGCTAAAATGGTCA+AGG | 0.623894 | 7_1:+4793307 | Msa1006140:CDS |
| GGTTAAGGTTGTACTTGCAG+AGG | 0.631575 | 7_1:-4789591 | None:intergenic |
| ATGGAGGAATATATTATGCG+AGG | 0.662673 | 7_1:+4794981 | Msa1006140:CDS |
| GAAGCAACCATAGAAACATG+AGG | 0.669495 | 7_1:-4794299 | None:intergenic |
| GCATCCTAGAATAACTCTAG+GGG | 0.685890 | 7_1:+4791906 | Msa1006140:CDS |
| TATCCAGTTTCAGCTCTCGG+AGG | 0.693631 | 7_1:+4794242 | Msa1006140:CDS |
| ACCAACCTCAAACACACCTG+GGG | 0.713293 | 7_1:-4791784 | None:intergenic |
| GTGGTGGATACTGAAAGCTG+AGG | 0.757250 | 7_1:-4789704 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAATTGAAATTAATAA+TGG | + | chr7_1:4790532-4790551 | Msa1006140:intron | 10.0% |
| !!! | AAAAGTCAAATAATATTTTT+TGG | + | chr7_1:4791596-4791615 | Msa1006140:intron | 10.0% |
| !! | CATTTCTATAAATATAAATA+TGG | + | chr7_1:4795131-4795150 | Msa1006140:three_prime_UTR | 10.0% |
| !!! | TCATTTTTATCAATAACTTT+AGG | + | chr7_1:4789837-4789856 | Msa1006140:intron | 15.0% |
| !!! | CATTTTTATCAATAACTTTA+GGG | + | chr7_1:4789838-4789857 | Msa1006140:intron | 15.0% |
| !!! | ATTTTTATCAATAACTTTAG+GGG | + | chr7_1:4789839-4789858 | Msa1006140:intron | 15.0% |
| !! | GTTATAAACAATTTACAATT+TGG | - | chr7_1:4789942-4789961 | None:intergenic | 15.0% |
| !!! | ATTTCAATTTTCATATTCTA+AGG | - | chr7_1:4790526-4790545 | None:intergenic | 15.0% |
| !! | AAAATTCAACAATATTGATA+TGG | + | chr7_1:4791252-4791271 | Msa1006140:intron | 15.0% |
| !!! | TCAAATAATATTTTTTGGAA+TGG | + | chr7_1:4791601-4791620 | Msa1006140:intron | 15.0% |
| !!! | TGCTTTACTATAAATTTTAA+TGG | + | chr7_1:4791706-4791725 | Msa1006140:intron | 15.0% |
| !! | TAATGTTCTCAAATTATTAT+CGG | + | chr7_1:4793715-4793734 | Msa1006140:intron | 15.0% |
| !! | AAATAAATAAACAATTACAC+AGG | + | chr7_1:4794523-4794542 | Msa1006140:intron | 15.0% |
| !!! | TTTTTTATTTCTTATTCCAA+CGG | - | chr7_1:4794663-4794682 | None:intergenic | 15.0% |
| !! | TTAATTTAAGGATTTGTAAT+CGG | - | chr7_1:4794691-4794710 | None:intergenic | 15.0% |
| !! | TCTATAAATATAAATATGGA+AGG | + | chr7_1:4795135-4795154 | Msa1006140:three_prime_UTR | 15.0% |
| !! | GTAGAACTTAAAACTTAATT+TGG | + | chr7_1:4789874-4789893 | Msa1006140:intron | 20.0% |
| !!! | TTTTCTTTCTATCGAATTAT+CGG | + | chr7_1:4790100-4790119 | Msa1006140:intron | 20.0% |
| !!! | TTTGTAATCTGAATTTTTAG+TGG | + | chr7_1:4790592-4790611 | Msa1006140:intron | 20.0% |
| !!! | TTGTAATCTGAATTTTTAGT+GGG | + | chr7_1:4790593-4790612 | Msa1006140:intron | 20.0% |
| !! | AAGTTTATTAACGATGAAAA+GGG | + | chr7_1:4790640-4790659 | Msa1006140:intron | 20.0% |
| !! | ACAACTAATATTCTAACATT+TGG | + | chr7_1:4791018-4791037 | Msa1006140:intron | 20.0% |
| !! | CATTTCAAAATAGAGTTTAA+CGG | + | chr7_1:4791356-4791375 | Msa1006140:intron | 20.0% |
| !! | AAATTTAAACCTCAAAAACA+AGG | - | chr7_1:4791838-4791857 | None:intergenic | 20.0% |
| !! | TATCAAGAGTTACTTAAATT+TGG | - | chr7_1:4792080-4792099 | None:intergenic | 20.0% |
| !! | AATCATATCAATTTGCAATA+GGG | - | chr7_1:4792122-4792141 | None:intergenic | 20.0% |
| !! | AAATCATATCAATTTGCAAT+AGG | - | chr7_1:4792123-4792142 | None:intergenic | 20.0% |
| !! | AAAGATATTTCAATAGTTAG+AGG | + | chr7_1:4792341-4792360 | Msa1006140:intron | 20.0% |
| !!! | ACTTGTTTATCAGAATATTT+TGG | + | chr7_1:4792944-4792963 | Msa1006140:intron | 20.0% |
| !!! | AATATTTTGGATTATGTTCA+AGG | + | chr7_1:4792957-4792976 | Msa1006140:CDS | 20.0% |
| !! | AAGAGAATAAACTAAAGTTA+GGG | - | chr7_1:4793165-4793184 | None:intergenic | 20.0% |
| !! | AAACATAAAAGAAAATAGAG+AGG | - | chr7_1:4793337-4793356 | None:intergenic | 20.0% |
| !!! | TGTTAAACCTAATTTTAAGA+TGG | + | chr7_1:4793585-4793604 | Msa1006140:intron | 20.0% |
| !! | ATAGATACCATCTTAAAATT+AGG | - | chr7_1:4793595-4793614 | None:intergenic | 20.0% |
| !! | TTCAATGTAATCATATGTAT+CGG | - | chr7_1:4793690-4793709 | None:intergenic | 20.0% |
| !! | TGCAAAAAATACAATTAATG+CGG | + | chr7_1:4793949-4793968 | Msa1006140:intron | 20.0% |
| !!! | CAGTTTTTCATGTTATATTT+CGG | + | chr7_1:4794075-4794094 | Msa1006140:intron | 20.0% |
| !! | AAATAAATCAGAGAGTAAAA+AGG | - | chr7_1:4794168-4794187 | None:intergenic | 20.0% |
| !! | TCAAATGTATATAACTCAAT+AGG | - | chr7_1:4794359-4794378 | None:intergenic | 20.0% |
| !!! | ATAGTAATATCTGAGAATTT+TGG | - | chr7_1:4794454-4794473 | None:intergenic | 20.0% |
| !! | AGAAATAATATGTTTGCAAT+CGG | - | chr7_1:4794562-4794581 | None:intergenic | 20.0% |
| !! | AGAAATTGTCTCTTAATTTA+AGG | - | chr7_1:4794703-4794722 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTTTTATTCTATG+AGG | + | chr7_1:4795161-4795180 | Msa1006140:three_prime_UTR | 20.0% |
| !! | TTTCTTCTTTGCTTTCATTT+TGG | + | chr7_1:4789804-4789823 | Msa1006140:intron | 25.0% |
| !!! | GGATATTATTTTTTGTCACT+GGG | - | chr7_1:4789921-4789940 | None:intergenic | 25.0% |
| !!! | TGGATATTATTTTTTGTCAC+TGG | - | chr7_1:4789922-4789941 | None:intergenic | 25.0% |
| ! | TTCAATTGTTTGTGTTACAT+AGG | + | chr7_1:4790286-4790305 | Msa1006140:intron | 25.0% |
| ! | CAAGTTTATTAACGATGAAA+AGG | + | chr7_1:4790639-4790658 | Msa1006140:intron | 25.0% |
| !!! | CATGTTTTTTCCATGTTATA+AGG | + | chr7_1:4790944-4790963 | Msa1006140:intron | 25.0% |
| ! | TTCTTTAACTCCTTATAACA+TGG | - | chr7_1:4790957-4790976 | None:intergenic | 25.0% |
| ! | TTATAAGGAGTTAAAGAAAC+TGG | + | chr7_1:4790959-4790978 | Msa1006140:intron | 25.0% |
| ! | TATAAGGAGTTAAAGAAACT+GGG | + | chr7_1:4790960-4790979 | Msa1006140:intron | 25.0% |
| !!! | CGTTAAACTCTATTTTGAAA+TGG | - | chr7_1:4791358-4791377 | None:intergenic | 25.0% |
| !! | TTTAAGATGTGGTTACAAAT+TGG | - | chr7_1:4791458-4791477 | None:intergenic | 25.0% |
| !!! | TTTGCAGTTATTTTAAGATG+TGG | - | chr7_1:4791469-4791488 | None:intergenic | 25.0% |
| ! | TCATATTATCTAAGAGAGAA+TGG | - | chr7_1:4791525-4791544 | None:intergenic | 25.0% |
| !! | TTTTCCACATTCATAAACTT+CGG | - | chr7_1:4792001-4792020 | None:intergenic | 25.0% |
| !!! | CTTTGAGATAGATATATTGA+TGG | + | chr7_1:4792143-4792162 | Msa1006140:intron | 25.0% |
| ! | CTATTCTCTCAAATTATTAC+CGG | + | chr7_1:4792433-4792452 | Msa1006140:intron | 25.0% |
| !! | TTGTTGTTACTTGTTAGAAT+TGG | + | chr7_1:4792843-4792862 | Msa1006140:intron | 25.0% |
| !! | GGTGAAATTTTATATATTCC+CGG | + | chr7_1:4792981-4793000 | Msa1006140:CDS | 25.0% |
| ! | GAAGAGAATAAACTAAAGTT+AGG | - | chr7_1:4793166-4793185 | None:intergenic | 25.0% |
| ! | TAAACAAGATCATTAAACAG+CGG | - | chr7_1:4793261-4793280 | None:intergenic | 25.0% |
| ! | TCATATAGATACAGAAGAAA+AGG | - | chr7_1:4793400-4793419 | None:intergenic | 25.0% |
| ! | ATACTTAAACTGCTGATATT+TGG | + | chr7_1:4793518-4793537 | Msa1006140:intron | 25.0% |
| ! | TACTTAAACTGCTGATATTT+GGG | + | chr7_1:4793519-4793538 | Msa1006140:intron | 25.0% |
| ! | TTGTACTAAATAGTGTATTG+TGG | + | chr7_1:4793859-4793878 | Msa1006140:intron | 25.0% |
| !!! | GCATTAATTGTATTTTTTGC+AGG | - | chr7_1:4793950-4793969 | None:intergenic | 25.0% |
| ! | GCAAAAAATACAATTAATGC+GGG | + | chr7_1:4793950-4793969 | Msa1006140:intron | 25.0% |
| !!! | ACATAATAGGAGGTTTTTTT+TGG | + | chr7_1:4794407-4794426 | Msa1006140:intron | 25.0% |
| ! | ATTTCTCTCTCTTAATCTAA+CGG | + | chr7_1:4794717-4794736 | Msa1006140:intron | 25.0% |
| !! | CAATATTTGATAACCAGAAA+AGG | - | chr7_1:4794788-4794807 | None:intergenic | 25.0% |
| !! | TTTGTGTCTATATTTTCCAA+TGG | - | chr7_1:4794893-4794912 | None:intergenic | 25.0% |
| !!! | ATTTGAGGTAAATTTTCCAA+TGG | - | chr7_1:4794947-4794966 | None:intergenic | 25.0% |
| ! | TTGAATCTACAAACAATTTG+AGG | - | chr7_1:4794962-4794981 | None:intergenic | 25.0% |
| ! | CAAATTGTTTGTAGATTCAA+TGG | + | chr7_1:4794962-4794981 | Msa1006140:intron | 25.0% |
| ! | AGATGCTATATTTGATAAAG+AGG | + | chr7_1:4795025-4795044 | Msa1006140:CDS | 25.0% |
| AATGAAAGCAAAGAAGAAAG+TGG | - | chr7_1:4789803-4789822 | None:intergenic | 30.0% | |
| ! | GGTCCCTTATAATTTTCATA+TGG | + | chr7_1:4789895-4789914 | Msa1006140:intron | 30.0% |
| GGGCCATATGAAAATTATAA+GGG | - | chr7_1:4789901-4789920 | None:intergenic | 30.0% | |
| TGGGCCATATGAAAATTATA+AGG | - | chr7_1:4789902-4789921 | None:intergenic | 30.0% | |
| ! | GACTAATTGATGCAATTTTG+TGG | + | chr7_1:4789992-4790011 | Msa1006140:intron | 30.0% |
| GTGTAATATTAGTCGATTGA+AGG | + | chr7_1:4790122-4790141 | Msa1006140:intron | 30.0% | |
| TGACAAGAAAATGACAGATA+TGG | + | chr7_1:4790248-4790267 | Msa1006140:intron | 30.0% | |
| AAGTGCACATAAAATCTTTG+TGG | + | chr7_1:4790451-4790470 | Msa1006140:intron | 30.0% | |
| GACTAATCCTCTTTCAATAA+TGG | - | chr7_1:4790793-4790812 | None:intergenic | 30.0% | |
| ATTTCCCTATCTGTTTATGT+TGG | + | chr7_1:4791085-4791104 | Msa1006140:intron | 30.0% | |
| TAAGCCAACATAAACAGATA+GGG | - | chr7_1:4791092-4791111 | None:intergenic | 30.0% | |
| !!! | CTCTATTTTGAAATGGCATA+AGG | - | chr7_1:4791351-4791370 | None:intergenic | 30.0% |
| GGTTACAAATTGGATTTATG+TGG | - | chr7_1:4791448-4791467 | None:intergenic | 30.0% | |
| TTAGGATAAATTCATCTGCA+TGG | + | chr7_1:4791671-4791690 | Msa1006140:intron | 30.0% | |
| ACATGTGAAGAAAACAAAGA+TGG | - | chr7_1:4791743-4791762 | None:intergenic | 30.0% | |
| ! | TTGTTTTCTTCACATGTAGT+TGG | + | chr7_1:4791746-4791765 | Msa1006140:intron | 30.0% |
| ! | AATTTGCTTCTTGTTTGTGT+AGG | + | chr7_1:4791861-4791880 | Msa1006140:intron | 30.0% |
| TTCGTCAGTGTTATATCAAA+TGG | + | chr7_1:4791969-4791988 | Msa1006140:intron | 30.0% | |
| ATTTGGTTACATTACAGCAT+CGG | - | chr7_1:4792063-4792082 | None:intergenic | 30.0% | |
| ATTGTCGCATAAGTTAAGAT+AGG | + | chr7_1:4792178-4792197 | Msa1006140:intron | 30.0% | |
| TTGTCGCATAAGTTAAGATA+GGG | + | chr7_1:4792179-4792198 | Msa1006140:intron | 30.0% | |
| ATTTCAATAGTTAGAGGTAG+AGG | + | chr7_1:4792347-4792366 | Msa1006140:intron | 30.0% | |
| ! | ACTCATTAGAAATTTAGCTC+CGG | - | chr7_1:4792728-4792747 | None:intergenic | 30.0% |
| TTTCAAACCTTAACATTTGC+AGG | - | chr7_1:4792751-4792770 | None:intergenic | 30.0% | |
| CTGTCAAATTTCAGTATTTG+AGG | + | chr7_1:4792882-4792901 | Msa1006140:intron | 30.0% | |
| GTTCAAACAAAACTGCATAT+TGG | - | chr7_1:4792926-4792945 | None:intergenic | 30.0% | |
| ! | ATTTTGGATTATGTTCAAGG+TGG | + | chr7_1:4792960-4792979 | Msa1006140:CDS | 30.0% |
| GGATTGAACATTAATATTGC+AGG | - | chr7_1:4793075-4793094 | None:intergenic | 30.0% | |
| TTTGACTGTGTAGAAGAATT+AGG | + | chr7_1:4793101-4793120 | Msa1006140:intron | 30.0% | |
| ACACTTGGAACTCTTAATAA+TGG | - | chr7_1:4793361-4793380 | None:intergenic | 30.0% | |
| ! | TCTCGATTGATTTAAACACT+TGG | - | chr7_1:4793376-4793395 | None:intergenic | 30.0% |
| !!! | AATTTTCTTTGGGAGGTATT+GGG | - | chr7_1:4793456-4793475 | None:intergenic | 30.0% |
| ! | TCCAATTCGGAATTTTCTTT+GGG | - | chr7_1:4793466-4793485 | None:intergenic | 30.0% |
| ! | ATCCAATTCGGAATTTTCTT+TGG | - | chr7_1:4793467-4793486 | None:intergenic | 30.0% |
| AATTTAACTGCATTGCATAG+CGG | - | chr7_1:4793908-4793927 | None:intergenic | 30.0% | |
| TTTAACAACACTGCATTGAA+TGG | + | chr7_1:4793980-4793999 | Msa1006140:intron | 30.0% | |
| TTAACAACACTGCATTGAAT+GGG | + | chr7_1:4793981-4794000 | Msa1006140:intron | 30.0% | |
| ! | TTTAGAACTGTCTGATTATG+TGG | + | chr7_1:4794131-4794150 | Msa1006140:intron | 30.0% |
| ATCTATCACATGAAAAACCA+AGG | - | chr7_1:4794221-4794240 | None:intergenic | 30.0% | |
| !! | AACCTGTTTTATTGTGTATG+CGG | - | chr7_1:4794750-4794769 | None:intergenic | 30.0% |
| CACAATAAAACAGGTTTCAA+AGG | + | chr7_1:4794754-4794773 | Msa1006140:intron | 30.0% | |
| ! | AAAGGATCATTTTCCTTTTC+TGG | + | chr7_1:4794772-4794791 | Msa1006140:intron | 30.0% |
| TTGTGTCTATCAAACATGTA+TGG | - | chr7_1:4794838-4794857 | None:intergenic | 30.0% | |
| ATTGTTTGTAGATTCAATGG+AGG | + | chr7_1:4794965-4794984 | Msa1006140:intron | 30.0% | |
| TTGACATTGGTACATGGTTA+AGG | - | chr7_1:4789609-4789628 | None:intergenic | 35.0% | |
| TAACCATGTACCAATGTCAA+TGG | + | chr7_1:4789609-4789628 | Msa1006140:CDS | 35.0% | |
| AAGAAGACAACCATTGACAT+TGG | - | chr7_1:4789622-4789641 | None:intergenic | 35.0% | |
| TGTCTTCTTCAACTTCTTCT+AGG | + | chr7_1:4789633-4789652 | Msa1006140:CDS | 35.0% | |
| ! | AAGTGTTTTATCAACTGTGG+TGG | - | chr7_1:4789723-4789742 | None:intergenic | 35.0% |
| !! | GCAAAGTGTTTTATCAACTG+TGG | - | chr7_1:4789726-4789745 | None:intergenic | 35.0% |
| CTTTGCCAAATCAAGAATTC+TGG | + | chr7_1:4789740-4789759 | Msa1006140:CDS | 35.0% | |
| TGACACCAGAATTCTTGATT+TGG | - | chr7_1:4789748-4789767 | None:intergenic | 35.0% | |
| AAAGCAAAGAAGAAAGTGGA+AGG | - | chr7_1:4789799-4789818 | None:intergenic | 35.0% | |
| ACACAATAATGACATGTGTG+TGG | + | chr7_1:4790160-4790179 | Msa1006140:intron | 35.0% | |
| CGAAACTATCAGTGTTACAT+AGG | + | chr7_1:4790208-4790227 | Msa1006140:intron | 35.0% | |
| ! | TTTTATCGATGTGTACGTGT+TGG | + | chr7_1:4790387-4790406 | Msa1006140:intron | 35.0% |
| TACACATGCTATCCTCTAAA+GGG | - | chr7_1:4790566-4790585 | None:intergenic | 35.0% | |
| TGATAAGCCATATGGTATCA+AGG | + | chr7_1:4790700-4790719 | Msa1006140:intron | 35.0% | |
| GTCTATATAGTTGCTCGAAT+AGG | + | chr7_1:4790732-4790751 | Msa1006140:intron | 35.0% | |
| !! | CTGAATGTTGATGATGAGAA+GGG | + | chr7_1:4790857-4790876 | Msa1006140:intron | 35.0% |
| ATGTCCATGATCAGCAAAAA+GGG | - | chr7_1:4790927-4790946 | None:intergenic | 35.0% | |
| GTAAGCCAACATAAACAGAT+AGG | - | chr7_1:4791093-4791112 | None:intergenic | 35.0% | |
| ACTTACATATAGTGCAGAAG+TGG | + | chr7_1:4791125-4791144 | Msa1006140:intron | 35.0% | |
| TTCTCTGTACATGACCAAAT+AGG | - | chr7_1:4791318-4791337 | None:intergenic | 35.0% | |
| GTTTAACGGTGATACACTAT+CGG | + | chr7_1:4791370-4791389 | Msa1006140:intron | 35.0% | |
| GAATGGATCAAAGTTCTTCT+TGG | + | chr7_1:4791618-4791637 | Msa1006140:intron | 35.0% | |
| ACTTTGTGGAAGAGTAGTTT+AGG | + | chr7_1:4791653-4791672 | Msa1006140:intron | 35.0% | |
| GTGAGAAAGCAAATAAGGTT+AGG | - | chr7_1:4791812-4791831 | None:intergenic | 35.0% | |
| AGCATCCTAGAATAACTCTA+GGG | + | chr7_1:4791905-4791924 | Msa1006140:CDS | 35.0% | |
| CACATTCATAAACTTCGGTT+TGG | - | chr7_1:4791996-4792015 | None:intergenic | 35.0% | |
| CAAACCGAAGTTTATGAATG+TGG | + | chr7_1:4791994-4792013 | Msa1006140:intron | 35.0% | |
| ! | TTGATATTACTAGCTTGCAC+AGG | + | chr7_1:4792094-4792113 | Msa1006140:intron | 35.0% |
| !! | GAAAGCTTTTGAGAGAAAAG+TGG | + | chr7_1:4792210-4792229 | Msa1006140:intron | 35.0% |
| CGCATATACTGTAGAAAAGA+TGG | + | chr7_1:4792241-4792260 | Msa1006140:intron | 35.0% | |
| ! | TGGTAAAATCTTGCTGTATG+TGG | + | chr7_1:4792261-4792280 | Msa1006140:intron | 35.0% |
| ! | AAATCTTGCTGTATGTGGTT+TGG | + | chr7_1:4792266-4792285 | Msa1006140:intron | 35.0% |
| !! | CTGTAGAAGCATTAGTATGA+AGG | + | chr7_1:4792306-4792325 | Msa1006140:intron | 35.0% |
| CAAATTATTACCGGTGTGAA+CGG | + | chr7_1:4792442-4792461 | Msa1006140:intron | 35.0% | |
| AAATTATTACCGGTGTGAAC+GGG | + | chr7_1:4792443-4792462 | Msa1006140:intron | 35.0% | |
| AGTGCTTAACAGGACATTAT+GGG | + | chr7_1:4792492-4792511 | Msa1006140:intron | 35.0% | |
| CTTCTCTCAGTGATTATGTT+AGG | - | chr7_1:4792533-4792552 | None:intergenic | 35.0% | |
| TAATCACTGAGAGAAGACTT+TGG | + | chr7_1:4792537-4792556 | Msa1006140:intron | 35.0% | |
| AATGAGTCCTGCAAATGTTA+AGG | + | chr7_1:4792741-4792760 | Msa1006140:CDS | 35.0% | |
| ! | TCAGTATTTGAGGCAATACT+AGG | + | chr7_1:4792892-4792911 | Msa1006140:intron | 35.0% |
| CGAAAAGTTGACACTTACTT+CGG | - | chr7_1:4793021-4793040 | None:intergenic | 35.0% | |
| ! | CGAAGTAAGTGTCAACTTTT+CGG | + | chr7_1:4793019-4793038 | Msa1006140:intron | 35.0% |
| TTCTACACAGTCAAATGCAA+TGG | - | chr7_1:4793096-4793115 | None:intergenic | 35.0% | |
| ATATTGTCTGCATATGATGC+AGG | + | chr7_1:4793290-4793309 | Msa1006140:CDS | 35.0% | |
| ATATGATGCAGGTGCTAAAA+TGG | + | chr7_1:4793301-4793320 | Msa1006140:CDS | 35.0% | |
| !! | GAATTTTCTTTGGGAGGTAT+TGG | - | chr7_1:4793457-4793476 | None:intergenic | 35.0% |
| ! | AATTCGGAATTTTCTTTGGG+AGG | - | chr7_1:4793463-4793482 | None:intergenic | 35.0% |
| TCCCAAAGAAAATTCCGAAT+TGG | + | chr7_1:4793462-4793481 | Msa1006140:intron | 35.0% | |
| ! | CGTCAATTTGAGATCCAATT+CGG | - | chr7_1:4793479-4793498 | None:intergenic | 35.0% |
| CGAATTGGATCTCAAATTGA+CGG | + | chr7_1:4793477-4793496 | Msa1006140:intron | 35.0% | |
| GAATTGGATCTCAAATTGAC+GGG | + | chr7_1:4793478-4793497 | Msa1006140:intron | 35.0% | |
| !! | ATCTCAAATTGACGGGTTTA+GGG | + | chr7_1:4793485-4793504 | Msa1006140:intron | 35.0% |
| TTAAACTGCTGATATTTGGG+AGG | + | chr7_1:4793522-4793541 | Msa1006140:intron | 35.0% | |
| ATGAAGCACAGATTTAGACA+TGG | - | chr7_1:4793770-4793789 | None:intergenic | 35.0% | |
| TTTAACATTCTTCAACGTCG+AGG | - | chr7_1:4794013-4794032 | None:intergenic | 35.0% | |
| TTCTAAATATGCAAGCTAGG+AGG | - | chr7_1:4794118-4794137 | None:intergenic | 35.0% | |
| !! | CAGTTCTAAATATGCAAGCT+AGG | - | chr7_1:4794121-4794140 | None:intergenic | 35.0% |
| CAGTGCATTATATGTTACCT+TGG | + | chr7_1:4794201-4794220 | Msa1006140:intron | 35.0% | |
| ATTTATCCAGTTTCAGCTCT+CGG | + | chr7_1:4794239-4794258 | Msa1006140:CDS | 35.0% | |
| ACCATAGAAACATGAGGAAA+GGG | - | chr7_1:4794296-4794315 | None:intergenic | 35.0% | |
| AACCATAGAAACATGAGGAA+AGG | - | chr7_1:4794297-4794316 | None:intergenic | 35.0% | |
| ACCTCCTATTATGTCATAGA+GGG | - | chr7_1:4794401-4794420 | None:intergenic | 35.0% | |
| AACCTCCTATTATGTCATAG+AGG | - | chr7_1:4794402-4794421 | None:intergenic | 35.0% | |
| !!! | AGGAGGTTTTTTTTGGTGTT+AGG | + | chr7_1:4794414-4794433 | Msa1006140:intron | 35.0% |
| ACGTATGATCAAAGTCTAGA+TGG | - | chr7_1:4794627-4794646 | None:intergenic | 35.0% | |
| AGACTTTGATCATACGTAGT+CGG | + | chr7_1:4794630-4794649 | Msa1006140:intron | 35.0% | |
| GCAGATTAAGTTAACACCAT+TGG | + | chr7_1:4794874-4794893 | Msa1006140:intron | 35.0% | |
| GCAGATTAAGTTAACACCAT+TGG | + | chr7_1:4794874-4794893 | Msa1006140:intron | 35.0% | |
| ATGGAGGAATATATTATGCG+AGG | + | chr7_1:4794981-4795000 | Msa1006140:CDS | 35.0% | |
| CAACCATTGACATTGGTACA+TGG | - | chr7_1:4789615-4789634 | None:intergenic | 40.0% | |
| CATGTAACCCTACTAGGATT+AGG | - | chr7_1:4789665-4789684 | None:intergenic | 40.0% | |
| ACTTTGCATGTAACCCTACT+AGG | - | chr7_1:4789671-4789690 | None:intergenic | 40.0% | |
| CAAAGAAGAAAGTGGAAGGT+GGG | - | chr7_1:4789795-4789814 | None:intergenic | 40.0% | |
| ! | TCGATTGAAGGTATGTTGAG+TGG | + | chr7_1:4790134-4790153 | Msa1006140:intron | 40.0% |
| CTACACATGCTATCCTCTAA+AGG | - | chr7_1:4790567-4790586 | None:intergenic | 40.0% | |
| GATGAAAAGGGAGAACACTT+TGG | + | chr7_1:4790652-4790671 | Msa1006140:intron | 40.0% | |
| ! | TTGGTGGTATGCAACATATG+AGG | + | chr7_1:4790671-4790690 | Msa1006140:intron | 40.0% |
| TGGTATGCAACATATGAGGT+AGG | + | chr7_1:4790675-4790694 | Msa1006140:intron | 40.0% | |
| GGTAGGTTTGATAAGCCATA+TGG | + | chr7_1:4790692-4790711 | Msa1006140:intron | 40.0% | |
| CGCAAATCCTTGATACCATA+TGG | - | chr7_1:4790710-4790729 | None:intergenic | 40.0% | |
| ! | CAGAGTGCCATTATTGAAAG+AGG | + | chr7_1:4790783-4790802 | Msa1006140:intron | 40.0% |
| !! | GCTGAATGTTGATGATGAGA+AGG | + | chr7_1:4790856-4790875 | Msa1006140:intron | 40.0% |
| !!! | GATGAGAAGGGTATTTTACC+TGG | + | chr7_1:4790869-4790888 | Msa1006140:intron | 40.0% |
| ! | CATTCCCTTTTTGCTGATCA+TGG | + | chr7_1:4790920-4790939 | Msa1006140:intron | 40.0% |
| CATGTCCATGATCAGCAAAA+AGG | - | chr7_1:4790928-4790947 | None:intergenic | 40.0% | |
| GGAGTTAAAGAAACTGGGTT+CGG | + | chr7_1:4790965-4790984 | Msa1006140:intron | 40.0% | |
| ATATAGTGCAGAAGTGGCAT+TGG | + | chr7_1:4791131-4791150 | Msa1006140:intron | 40.0% | |
| GAATCGCTTCAGATCCTATT+TGG | + | chr7_1:4791301-4791320 | Msa1006140:intron | 40.0% | |
| GGAGAGTGAGAAAGCAAATA+AGG | - | chr7_1:4791817-4791836 | None:intergenic | 40.0% | |
| !!! | TCTCACTCTCCTTGTTTTTG+AGG | + | chr7_1:4791826-4791845 | Msa1006140:intron | 40.0% |
| GAGCATCCTAGAATAACTCT+AGG | + | chr7_1:4791904-4791923 | Msa1006140:CDS | 40.0% | |
| GCATCCTAGAATAACTCTAG+GGG | + | chr7_1:4791906-4791925 | Msa1006140:CDS | 40.0% | |
| CATACCCCTAGAGTTATTCT+AGG | - | chr7_1:4791913-4791932 | None:intergenic | 40.0% | |
| !! | CAGCATCGGTAATTAGAACA+TGG | - | chr7_1:4792049-4792068 | None:intergenic | 40.0% |
| !! | CTTTTGAGAGAAAAGTGGAG+TGG | + | chr7_1:4792215-4792234 | Msa1006140:intron | 40.0% |
| TTAGAGGTAGAGGAATGCAA+GGG | + | chr7_1:4792357-4792376 | Msa1006140:intron | 40.0% | |
| TTGAATGTAACCACGTGAGT+CGG | - | chr7_1:4792408-4792427 | None:intergenic | 40.0% | |
| !! | GTTAAGCACTGACACAGATA+CGG | - | chr7_1:4792482-4792501 | None:intergenic | 40.0% |
| TATCTGTGTCAGTGCTTAAC+AGG | + | chr7_1:4792482-4792501 | Msa1006140:intron | 40.0% | |
| CAGTGCTTAACAGGACATTA+TGG | + | chr7_1:4792491-4792510 | Msa1006140:intron | 40.0% | |
| CTCAACAGATATATGCCCTT+AGG | + | chr7_1:4792657-4792676 | Msa1006140:intron | 40.0% | |
| ACAGATATATGCCCTTAGGT+TGG | + | chr7_1:4792661-4792680 | Msa1006140:intron | 40.0% | |
| TGAGAACAGTTCCAACCTAA+GGG | - | chr7_1:4792675-4792694 | None:intergenic | 40.0% | |
| GCAAAAACTGCAATTAACGC+CGG | + | chr7_1:4792706-4792725 | Msa1006140:CDS | 40.0% | |
| CAGAGTGATTTCACACAACT+AGG | - | chr7_1:4792806-4792825 | None:intergenic | 40.0% | |
| AAGTTGACACTTACTTCGGT+TGG | - | chr7_1:4793017-4793036 | None:intergenic | 40.0% | |
| !! | GATCTCAAATTGACGGGTTT+AGG | + | chr7_1:4793484-4793503 | Msa1006140:intron | 40.0% |
| TATGAAGCACAAGTACTCCT+CGG | + | chr7_1:4793612-4793631 | Msa1006140:intron | 40.0% | |
| CACGATATGTATCCAATACC+AGG | - | chr7_1:4793649-4793668 | None:intergenic | 40.0% | |
| ACAGATTTAGACATGGAGAC+TGG | - | chr7_1:4793763-4793782 | None:intergenic | 40.0% | |
| ACTGAAGTAAGTCATGTCTC+TGG | - | chr7_1:4794059-4794078 | None:intergenic | 40.0% | |
| GAAGCAACCATAGAAACATG+AGG | - | chr7_1:4794302-4794321 | None:intergenic | 40.0% | |
| ! | TGTTTCTATGGTTGCTTCTC+AGG | + | chr7_1:4794304-4794323 | Msa1006140:CDS | 40.0% |
| GTTTCTATGGTTGCTTCTCA+GGG | + | chr7_1:4794305-4794324 | Msa1006140:CDS | 40.0% | |
| GCTTCTCAGGGAATAACAAT+AGG | + | chr7_1:4794317-4794336 | Msa1006140:CDS | 40.0% | |
| GATGCCCTCTATGACATAAT+AGG | + | chr7_1:4794394-4794413 | Msa1006140:intron | 40.0% | |
| AGCCGCATACACAATAAAAC+AGG | + | chr7_1:4794745-4794764 | Msa1006140:intron | 40.0% | |
| TAGGTAACCAAGCTGTGAAT+AGG | + | chr7_1:4795105-4795124 | Msa1006140:CDS | 40.0% | |
| AATGTCACCTATTCACAGCT+TGG | - | chr7_1:4795115-4795134 | None:intergenic | 40.0% | |
| GGTTAAGGTTGTACTTGCAG+AGG | - | chr7_1:4789594-4789613 | None:intergenic | 45.0% | |
| GCGTCTTCCTAATCCTAGTA+GGG | + | chr7_1:4789655-4789674 | Msa1006140:CDS | 45.0% | |
| TTGCTTGTCTCAGAGCCAAT+AGG | + | chr7_1:4789768-4789787 | Msa1006140:CDS | 45.0% | |
| GCAAAGAAGAAAGTGGAAGG+TGG | - | chr7_1:4789796-4789815 | None:intergenic | 45.0% | |
| TCACACGACAATGACACATG+CGG | + | chr7_1:4790061-4790080 | Msa1006140:intron | 45.0% | |
| CACACATGTCATGGTTGTGT+AGG | - | chr7_1:4790336-4790355 | None:intergenic | 45.0% | |
| CTACACAACCATGACATGTG+TGG | + | chr7_1:4790334-4790353 | Msa1006140:intron | 45.0% | |
| GTATCTAGCCACACATGTCA+TGG | - | chr7_1:4790345-4790364 | None:intergenic | 45.0% | |
| ATGGCTGTCATTCCCTTTAG+AGG | + | chr7_1:4790551-4790570 | Msa1006140:intron | 45.0% | |
| GAAAAGGGAGAACACTTTGG+TGG | + | chr7_1:4790655-4790674 | Msa1006140:intron | 45.0% | |
| AAGAAACTGGGTTCGGACTT+TGG | + | chr7_1:4790972-4790991 | Msa1006140:intron | 45.0% | |
| TACCAACCTCAAACACACCT+GGG | - | chr7_1:4791788-4791807 | None:intergenic | 45.0% | |
| TTACCAACCTCAAACACACC+TGG | - | chr7_1:4791789-4791808 | None:intergenic | 45.0% | |
| TGTGTAGGTTCTACAGAAGC+TGG | + | chr7_1:4791876-4791895 | Msa1006140:intron | 45.0% | |
| GTTAGAGGTAGAGGAATGCA+AGG | + | chr7_1:4792356-4792375 | Msa1006140:intron | 45.0% | |
| CTGAGAACAGTTCCAACCTA+AGG | - | chr7_1:4792676-4792695 | None:intergenic | 45.0% | |
| !! | CTTAGGTTGGAACTGTTCTC+AGG | + | chr7_1:4792674-4792693 | Msa1006140:intron | 45.0% |
| TGGAACTGTTCTCAGGATTG+AGG | + | chr7_1:4792681-4792700 | Msa1006140:CDS | 45.0% | |
| TTCGGTTGGAGTCATTGTTC+CGG | - | chr7_1:4793003-4793022 | None:intergenic | 45.0% | |
| TGCAGGTGCTAAAATGGTCA+AGG | + | chr7_1:4793307-4793326 | Msa1006140:CDS | 45.0% | |
| GGTGCTAAAATGGTCAAGGT+AGG | + | chr7_1:4793311-4793330 | Msa1006140:intron | 45.0% | |
| !! | GGGAGGTATTGGGAAGAAAT+TGG | - | chr7_1:4793446-4793465 | None:intergenic | 45.0% |
| TACGAAACCAGCTAGTAAGG+CGG | - | chr7_1:4793554-4793573 | None:intergenic | 45.0% | |
| TCCTACGAAACCAGCTAGTA+AGG | - | chr7_1:4793557-4793576 | None:intergenic | 45.0% | |
| GATTAGGTCTGTCCTGGTAT+TGG | + | chr7_1:4793634-4793653 | Msa1006140:intron | 45.0% | |
| !! | TATCGGTGTCATGTCAGTGT+CGG | - | chr7_1:4793673-4793692 | None:intergenic | 45.0% |
| CATGGAGACTGGACATAACA+CGG | - | chr7_1:4793752-4793771 | None:intergenic | 45.0% | |
| TCCAGTTATGAGTGTGTGAG+AGG | + | chr7_1:4793792-4793811 | Msa1006140:intron | 45.0% | |
| ACCTCTCACACACTCATAAC+TGG | - | chr7_1:4793796-4793815 | None:intergenic | 45.0% | |
| ATGAGGAAAGGGCTTCTTCA+GGG | - | chr7_1:4794285-4794304 | None:intergenic | 45.0% | |
| ! | GCCCTTTCCTCATGTTTCTA+TGG | + | chr7_1:4794292-4794311 | Msa1006140:CDS | 45.0% |
| GCCCTCTATGACATAATAGG+AGG | + | chr7_1:4794397-4794416 | Msa1006140:intron | 45.0% | |
| GCACAATCTGCTACCTTGTT+AGG | + | chr7_1:4795086-4795105 | Msa1006140:CDS | 45.0% | |
| CACAGCTTGGTTACCTAACA+AGG | - | chr7_1:4795102-4795121 | None:intergenic | 45.0% | |
| !!! | TAATGATTTTTTAATAATAA+AGG | + | chr7_1:4791229-4791248 | Msa1006140:intron | 5.0% |
| !!! | TTATTTAAATTTTTCTTTTT+TGG | + | chr7_1:4794599-4794618 | Msa1006140:intron | 5.0% |
| !!! | TATTTAAATTTTTCTTTTTT+GGG | + | chr7_1:4794600-4794619 | Msa1006140:intron | 5.0% |
| GGCGTCTTCCTAATCCTAGT+AGG | + | chr7_1:4789654-4789673 | Msa1006140:CDS | 50.0% | |
| !! | GTGGTGGATACTGAAAGCTG+AGG | - | chr7_1:4789707-4789726 | None:intergenic | 50.0% |
| AAGTGGAAGGTGGGACCTAT+TGG | - | chr7_1:4789786-4789805 | None:intergenic | 50.0% | |
| GCTGCAAATGCTGCAATAGC+AGG | + | chr7_1:4791156-4791175 | Msa1006140:CDS | 50.0% | |
| GCAAATGCTGCAATAGCAGG+TGG | + | chr7_1:4791159-4791178 | Msa1006140:CDS | 50.0% | |
| GGTCTGCACACTGAACTTTG+TGG | + | chr7_1:4791639-4791658 | Msa1006140:intron | 50.0% | |
| GAGATTGTGATGTCTACCCC+AGG | + | chr7_1:4791768-4791787 | Msa1006140:CDS | 50.0% | |
| ACCAACCTCAAACACACCTG+GGG | - | chr7_1:4791787-4791806 | None:intergenic | 50.0% | |
| GGTTCTACAGAAGCTGGTGA+AGG | + | chr7_1:4791882-4791901 | Msa1006140:intron | 50.0% | |
| TCGGTTGGAGTCATTGTTCC+GGG | - | chr7_1:4793002-4793021 | None:intergenic | 50.0% | |
| ACGAAACCAGCTAGTAAGGC+GGG | - | chr7_1:4793553-4793572 | None:intergenic | 50.0% | |
| ! | GCCTTACTAGCTGGTTTCGT+AGG | + | chr7_1:4793553-4793572 | Msa1006140:intron | 50.0% |
| GCACAAGTACTCCTCGGATT+AGG | + | chr7_1:4793618-4793637 | Msa1006140:intron | 50.0% | |
| TATCCAGTTTCAGCTCTCGG+AGG | + | chr7_1:4794242-4794261 | Msa1006140:CDS | 50.0% | |
| AATCCTCCGAGAGCTGAAAC+TGG | - | chr7_1:4794248-4794267 | None:intergenic | 50.0% | |
| CATGAGGAAAGGGCTTCTTC+AGG | - | chr7_1:4794286-4794305 | None:intergenic | 50.0% | |
| CACGCGTGCAGATATACACC+AGG | - | chr7_1:4790890-4790909 | None:intergenic | 55.0% | |
| CTGGGTTCGGACTTTGGTGA+AGG | + | chr7_1:4790978-4790997 | Msa1006140:intron | 55.0% | |
| GTCTACCCCAGGTGTGTTTG+AGG | + | chr7_1:4791779-4791798 | Msa1006140:CDS | 55.0% | |
| ! | ACCCCAGGTGTGTTTGAGGT+TGG | + | chr7_1:4791783-4791802 | Msa1006140:intron | 55.0% |
| !! | GTGAGTCGGTGTTGGACACT+GGG | - | chr7_1:4792394-4792413 | None:intergenic | 55.0% |
| GTAACCACGTGAGTCGGTGT+TGG | - | chr7_1:4792402-4792421 | None:intergenic | 55.0% | |
| CGACATTAGCCCGTTCACAC+CGG | - | chr7_1:4792455-4792474 | None:intergenic | 55.0% | |
| GAAACCAGCTAGTAAGGCGG+GGG | - | chr7_1:4793551-4793570 | None:intergenic | 55.0% | |
| CGAAACCAGCTAGTAAGGCG+GGG | - | chr7_1:4793552-4793571 | None:intergenic | 55.0% | |
| ! | TCCTCGGATTAGGTCTGTCC+TGG | + | chr7_1:4793628-4793647 | Msa1006140:intron | 55.0% |
| ACCAGGACAGACCTAATCCG+AGG | - | chr7_1:4793632-4793651 | None:intergenic | 55.0% | |
| ! | GGTGTTGGACACTGGGCACA+TGG | - | chr7_1:4792387-4792406 | None:intergenic | 60.0% |
| !! | CGTGAGTCGGTGTTGGACAC+TGG | - | chr7_1:4792395-4792414 | None:intergenic | 60.0% |
| !! | GTGTCCAACACCGACTCACG+TGG | + | chr7_1:4792395-4792414 | Msa1006140:intron | 60.0% |
| ! | CGTAGTCGGCTTCAGACCGT+TGG | + | chr7_1:4794644-4794663 | Msa1006140:intron | 60.0% |
| GTGTCCCCCGCCTTACTAGC+TGG | + | chr7_1:4793544-4793563 | Msa1006140:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 4789587 | 4795195 | 4789587 | ID=Msa1006140;Name=Msa1006140 |
| chr7_1 | mRNA | 4789587 | 4795195 | 4789587 | ID=Msa1006140-mRNA-1;Parent=Msa1006140;Name=Msa1006140-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.87|0.77|1|1|1|9|65|260 |
| chr7_1 | exon | 4789587 | 4789789 | 4789587 | ID=Msa1006140-mRNA-1:exon:1611;Parent=Msa1006140-mRNA-1 |
| chr7_1 | exon | 4791137 | 4791191 | 4791137 | ID=Msa1006140-mRNA-1:exon:1612;Parent=Msa1006140-mRNA-1 |
| chr7_1 | exon | 4791765 | 4791800 | 4791765 | ID=Msa1006140-mRNA-1:exon:1613;Parent=Msa1006140-mRNA-1 |
| chr7_1 | exon | 4791883 | 4791927 | 4791883 | ID=Msa1006140-mRNA-1:exon:1614;Parent=Msa1006140-mRNA-1 |
| chr7_1 | exon | 4792679 | 4792762 | 4792679 | ID=Msa1006140-mRNA-1:exon:1615;Parent=Msa1006140-mRNA-1 |
| chr7_1 | exon | 4792957 | 4793022 | 4792957 | ID=Msa1006140-mRNA-1:exon:1616;Parent=Msa1006140-mRNA-1 |
| chr7_1 | exon | 4793290 | 4793328 | 4793290 | ID=Msa1006140-mRNA-1:exon:1617;Parent=Msa1006140-mRNA-1 |
| chr7_1 | exon | 4794239 | 4794338 | 4794239 | ID=Msa1006140-mRNA-1:exon:1618;Parent=Msa1006140-mRNA-1 |
| chr7_1 | exon | 4794976 | 4795195 | 4794976 | ID=Msa1006140-mRNA-1:exon:1619;Parent=Msa1006140-mRNA-1 |
| chr7_1 | CDS | 4789587 | 4789789 | 4789587 | ID=Msa1006140-mRNA-1:cds;Parent=Msa1006140-mRNA-1 |
| chr7_1 | CDS | 4791137 | 4791191 | 4791137 | ID=Msa1006140-mRNA-1:cds;Parent=Msa1006140-mRNA-1 |
| chr7_1 | CDS | 4791765 | 4791800 | 4791765 | ID=Msa1006140-mRNA-1:cds;Parent=Msa1006140-mRNA-1 |
| chr7_1 | CDS | 4791883 | 4791927 | 4791883 | ID=Msa1006140-mRNA-1:cds;Parent=Msa1006140-mRNA-1 |
| chr7_1 | CDS | 4792679 | 4792762 | 4792679 | ID=Msa1006140-mRNA-1:cds;Parent=Msa1006140-mRNA-1 |
| chr7_1 | CDS | 4792957 | 4793022 | 4792957 | ID=Msa1006140-mRNA-1:cds;Parent=Msa1006140-mRNA-1 |
| chr7_1 | CDS | 4793290 | 4793328 | 4793290 | ID=Msa1006140-mRNA-1:cds;Parent=Msa1006140-mRNA-1 |
| chr7_1 | CDS | 4794239 | 4794338 | 4794239 | ID=Msa1006140-mRNA-1:cds;Parent=Msa1006140-mRNA-1 |
| chr7_1 | CDS | 4794976 | 4795130 | 4794976 | ID=Msa1006140-mRNA-1:cds;Parent=Msa1006140-mRNA-1 |
| chr7_1 | three_prime_UTR | 4795131 | 4795195 | 4795131 | ID=Msa1006140-mRNA-1:three_prime_utr;Parent=Msa1006140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
