AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1048330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048330 MtrunA17_Chr7g0216861 95.902 122 5 0 91 212 1 122 1.70e-82 243
Msa1048330 MtrunA17_Chr7g0216851 82.857 70 11 1 1 70 1 69 8.40e-33 115
Msa1048330 MtrunA17_Chr7g0216871 93.878 49 3 0 212 260 1 49 1.83e-26 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 62 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTATATCAGGATATTT+TGG 0.136739 7_2:+9940308 Msa1048330:intron
TTCAATGGAGGAATATATTA+TGG 0.223242 7_2:+9943073 Msa1048330:CDS
TGTCTTCTTCAACTTCTTCT+AGG 0.228202 7_2:+9936921 Msa1048330:CDS
TGTTTCTATGGTTGCTTCTC+AGG 0.260595 7_2:+9942454 Msa1048330:CDS
GCCCTTTCCTCATGTTTCTA+TGG 0.281002 7_2:+9942442 Msa1048330:CDS
TTTCGAACCTTAACATTTGC+AGG 0.312976 7_2:-9940112 None:intergenic
TTCGGTTGGAGTCATTGTTC+CGG 0.335610 7_2:-9940364 None:intergenic
CATACCCCTAGAGTTATTCT+AGG 0.335769 7_2:-9939238 None:intergenic
CATGTAACCCTGCTAGGATT+AGG 0.336708 7_2:-9936950 None:intergenic
CTTAGGTTGGAACTGTTCTC+AGG 0.354628 7_2:+9940038 Msa1048330:intron
CTCTGCCAAATCAAGAATTC+TGG 0.354839 7_2:+9937028 Msa1048330:CDS
CAAATTGTTTGTAGATTCAA+TGG 0.355850 7_2:+9943058 Msa1048330:intron
TCGGTTGGAGTCATTGTTCC+GGG 0.368934 7_2:-9940363 None:intergenic
TGCACAAACTGCTACCTTGT+TGG 0.380160 7_2:+9943181 Msa1048330:CDS
AATCCTCCAAGTGCTGAAAC+TGG 0.391654 7_2:-9942395 None:intergenic
GCACAAACTGCTACCTTGTT+GGG 0.392568 7_2:+9943182 Msa1048330:CDS
TGACACCAGAATTCTTGATT+TGG 0.399723 7_2:-9937033 None:intergenic
TTGACATTGGTACATGGTTA+AGG 0.413248 7_2:-9936894 None:intergenic
AATGAGTCCTGCAAATGTTA+AGG 0.417492 7_2:+9940105 Msa1048330:CDS
ATATGATGCAGGTGCTAAAA+TGG 0.441229 7_2:+9940719 Msa1048330:CDS
ATTTATCCAGTTTCAGCACT+TGG 0.444137 7_2:+9942389 Msa1048330:CDS
ATATAGTGCAGAAGTGGCCT+TGG 0.459063 7_2:+9938629 Msa1048330:intron
GTCTACTCCAGGTGTGTTTG+AGG 0.459764 7_2:+9939107 Msa1048330:CDS
GGCGTCTTCCTAATCCTAGC+AGG 0.462294 7_2:+9936942 Msa1048330:CDS
GCTTCTCAGGGAATAACAAT+AGG 0.467533 7_2:+9942467 Msa1048330:CDS
AGATGCTATATTTGATAAAG+AGG 0.471242 7_2:+9943121 Msa1048330:CDS
GTTTCTATGGTTGCTTCTCA+GGG 0.474075 7_2:+9942455 Msa1048330:CDS
GCTGCAAATGCTGCAATAGC+AGG 0.475105 7_2:+9938654 Msa1048330:CDS
AATGTCACTTATTCACAGCT+TGG 0.480387 7_2:-9943208 None:intergenic
TCAATGGAGGAATATATTAT+GGG 0.482009 7_2:+9943074 Msa1048330:CDS
TTGCTTGTCTCAGAGCCAAT+AGG 0.494076 7_2:+9937056 Msa1048330:CDS
GAGCATCCTAGAATAACTCT+AGG 0.497393 7_2:+9939232 Msa1048330:CDS
ACCATAGAAACATGAGGAAA+GGG 0.499530 7_2:-9942443 None:intergenic
TGCAGCATTTGCAGCTTCCA+AGG 0.499563 7_2:-9938646 None:intergenic
AAGTTGACACTTACTTCGGT+TGG 0.503822 7_2:-9940378 None:intergenic
TGGAACTGTTCTCAGGATTG+AGG 0.505369 7_2:+9940045 Msa1048330:CDS
TTGTAAATATAAATATGGAA+TGG 0.509632 7_2:+9943232 Msa1048330:three_prime_UTR
AGCATCCTAGAATAACTCTA+GGG 0.513150 7_2:+9939233 Msa1048330:CDS
CAACCATTGACATTGGTACA+TGG 0.515672 7_2:-9936900 None:intergenic
CACAGCTTGGTTACCCAACA+AGG 0.521254 7_2:-9943195 None:intergenic
TAACCATGTACCAATGTCAA+TGG 0.531872 7_2:+9936897 Msa1048330:CDS
ACTTTGCATGTAACCCTGCT+AGG 0.542921 7_2:-9936956 None:intergenic
AACCATAGAAACATGAGGAA+AGG 0.555765 7_2:-9942444 None:intergenic
TGTGTAGGTTCTACAACAGC+TGG 0.571829 7_2:+9939204 Msa1048330:intron
ACTTACATATAGTGCAGAAG+TGG 0.582840 7_2:+9938623 Msa1048330:intron
TATCCAGTTTCAGCACTTGG+AGG 0.586579 7_2:+9942392 Msa1048330:CDS
GAGATTGTGATGTCTACTCC+AGG 0.591589 7_2:+9939096 Msa1048330:CDS
AAGAAGACAACCATTGACAT+TGG 0.591717 7_2:-9936907 None:intergenic
ATTGTTTGTAGATTCAATGG+AGG 0.594558 7_2:+9943061 Msa1048330:intron
GGTTCTACAACAGCTGGTGA+AGG 0.600587 7_2:+9939210 Msa1048330:intron
GCAAATGCTGCAATAGCAGG+TGG 0.601354 7_2:+9938657 Msa1048330:CDS
ATATTGTCTGCATATGATGC+AGG 0.602331 7_2:+9940708 Msa1048330:CDS
TTACCAACCTCAAACACACC+TGG 0.610060 7_2:-9939114 None:intergenic
TGCAGGTGCTAAAATGGTCA+AGG 0.620940 7_2:+9940725 Msa1048330:CDS
ACTCATTAGAAATTTAGCCC+CGG 0.633975 7_2:-9940089 None:intergenic
GCGTCTTCCTAATCCTAGCA+GGG 0.636606 7_2:+9936943 Msa1048330:CDS
GGTTAAGGTTGTCCTTGCAG+AGG 0.641587 7_2:-9936879 None:intergenic
ACAAAACAATGACCTCTGCA+AGG 0.651574 7_2:+9936867 None:intergenic
ATGGAGGAATATATTATGGG+AGG 0.662673 7_2:+9943077 Msa1048330:CDS
GAAGCAACCATAGAAACATG+AGG 0.669495 7_2:-9942449 None:intergenic
GCATCCTAGAATAACTCTAG+GGG 0.685890 7_2:+9939234 Msa1048330:CDS
GTGGTGGATACTGAAAGCTG+AGG 0.757250 7_2:-9936992 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAATAAAAAAATA+GGG - chr7_2:9941169-9941188 None:intergenic 0.0%
!! ATTAAAAAAAATAAAAAAAT+AGG - chr7_2:9941170-9941189 None:intergenic 0.0%
!!! ATTTTATTTACATATACTAA+AGG + chr7_2:9940134-9940153 Msa1048330:intron 10.0%
!!! TAATATAATTTTTAAGTTGA+TGG - chr7_2:9941367-9941386 None:intergenic 10.0%
!!! CATTTTTGTAAATATAAATA+TGG + chr7_2:9943227-9943246 Msa1048330:three_prime_UTR 10.0%
!!! TCATTTTTATCAATTACTTT+AGG + chr7_2:9937125-9937144 Msa1048330:intron 15.0%
!!! CATTTTTATCAATTACTTTA+GGG + chr7_2:9937126-9937145 Msa1048330:intron 15.0%
!!! ATTTTTATCAATTACTTTAG+GGG + chr7_2:9937127-9937146 Msa1048330:intron 15.0%
!! TTTCCATATGAAAATTATAA+GGG - chr7_2:9937192-9937211 None:intergenic 15.0%
!!! TTTTCCATATGAAAATTATA+AGG - chr7_2:9937193-9937212 None:intergenic 15.0%
!! AAATTGAGTTATAAACAATT+TGG - chr7_2:9937223-9937242 None:intergenic 15.0%
!!! ATTTCAATTTTCATATTCTA+AGG - chr7_2:9938030-9938049 None:intergenic 15.0%
!! ATGAAAATTGAAATTCATAA+TGG + chr7_2:9938036-9938055 Msa1048330:intron 15.0%
!! AAAATTCAACAATATTGATA+TGG + chr7_2:9938749-9938768 Msa1048330:intron 15.0%
!! AAATATATTTCAATAGTTAG+AGG + chr7_2:9939668-9939687 Msa1048330:intron 15.0%
!!! CTATATTCTTTTTAATGATT+TGG - chr7_2:9939721-9939740 None:intergenic 15.0%
!! GTTTAAATAAAACTACATAT+TGG - chr7_2:9940290-9940309 None:intergenic 15.0%
!! TTTATTTAAACTTGTATATC+AGG + chr7_2:9940299-9940318 Msa1048330:intron 15.0%
!! GACATAATCAAAAATAAAAA+TGG - chr7_2:9940552-9940571 None:intergenic 15.0%
!! AAACATAAAAGAAAATAGAA+AGG - chr7_2:9940755-9940774 None:intergenic 15.0%
!! ATAGATATCATCTTAAAATT+AGG - chr7_2:9941019-9941038 None:intergenic 15.0%
!! AAAATAAAAAAATAGGGAAA+AGG - chr7_2:9941163-9941182 None:intergenic 15.0%
!!! TTTTTTATTTCTTAATCTAC+GGG - chr7_2:9942808-9942827 None:intergenic 15.0%
!!! GTTTTTTATTTCTTAATCTA+CGG - chr7_2:9942809-9942828 None:intergenic 15.0%
!! TTGTAAATATAAATATGGAA+TGG + chr7_2:9943232-9943251 Msa1048330:three_prime_UTR 15.0%
!! GAACTAGTTAAAACTTAATT+TGG + chr7_2:9937165-9937184 Msa1048330:intron 20.0%
!!! TTTTCTTTCTATCGAATTAT+CGG + chr7_2:9937498-9937517 Msa1048330:intron 20.0%
!! ATAAATTATGTGTGTTACAT+AGG + chr7_2:9937780-9937799 Msa1048330:intron 20.0%
!!! TTTGTAATCTGAATTTTTAG+TGG + chr7_2:9938096-9938115 Msa1048330:intron 20.0%
!!! TTGTAATCTGAATTTTTAGT+GGG + chr7_2:9938097-9938116 Msa1048330:intron 20.0%
!! AAGTTTATTAACGATGAAAA+GGG + chr7_2:9938144-9938163 Msa1048330:intron 20.0%
!! ACAACTAATATTCTAACATT+TGG + chr7_2:9938518-9938537 Msa1048330:intron 20.0%
!! AAATTTAAACCTCAAAAACA+AGG - chr7_2:9939166-9939185 None:intergenic 20.0%
!! TATCAAGAGTTACTTAAATT+TGG - chr7_2:9939407-9939426 None:intergenic 20.0%
!! AATCATATCAATTTGCAATA+GGG - chr7_2:9939449-9939468 None:intergenic 20.0%
!! AAATCATATCAATTTGCAAT+AGG - chr7_2:9939450-9939469 None:intergenic 20.0%
!!! TTTATATACGAAAATGGATT+AGG - chr7_2:9940598-9940617 None:intergenic 20.0%
!! ATATTTAAACTGTTGATACA+TGG + chr7_2:9940912-9940931 Msa1048330:intron 20.0%
!! TATTTAAACTGTTGATACAT+GGG + chr7_2:9940913-9940932 Msa1048330:intron 20.0%
!!! AAATGATTTTATAGATGTGT+CGG + chr7_2:9941328-9941347 Msa1048330:intron 20.0%
!! TTTCTATATAAGTTACAAGA+TGG - chr7_2:9941616-9941635 None:intergenic 20.0%
!!! GAATATTTTGTACTAAATAG+TGG + chr7_2:9942055-9942074 Msa1048330:intron 20.0%
!! AAACAAATAAATAATTGCAC+AGG + chr7_2:9942668-9942687 Msa1048330:intron 20.0%
!! AGAAATAATATGTTTGCAAT+CGG - chr7_2:9942707-9942726 None:intergenic 20.0%
!! TTGTCTCTTTCTTAATTTAA+CGG - chr7_2:9942846-9942865 None:intergenic 20.0%
!!! TTGTTTTCTTTTATTCTATG+AGG + chr7_2:9943258-9943277 Msa1048330:three_prime_UTR 20.0%
!! TTTCTTCTTTGCTTTCATTT+TGG + chr7_2:9937092-9937111 Msa1048330:intron 25.0%
!! TCAACACGTAATCAATTTTT+GGG + chr7_2:9937334-9937353 Msa1048330:intron 25.0%
! TTCAATTGTTTGTGTTACAT+AGG + chr7_2:9937685-9937704 Msa1048330:intron 25.0%
! CAAGTTTATTAACGATGAAA+AGG + chr7_2:9938143-9938162 Msa1048330:intron 25.0%
!!! CATGTTTTTTCCATGTTATA+AGG + chr7_2:9938444-9938463 Msa1048330:intron 25.0%
!!! TTTAAGTTGTGGTTACTAAT+TGG - chr7_2:9938949-9938968 None:intergenic 25.0%
!!! TTTGCAGTTATTTTAAGTTG+TGG - chr7_2:9938960-9938979 None:intergenic 25.0%
!! ATTTTACACTGACATCTAAT+GGG - chr7_2:9938993-9939012 None:intergenic 25.0%
!! AATTTTACACTGACATCTAA+TGG - chr7_2:9938994-9939013 None:intergenic 25.0%
!!! CTTTGAGATAGATATATTGA+TGG + chr7_2:9939470-9939489 Msa1048330:intron 25.0%
! CTATTCTCTCAAATTATTAC+CGG + chr7_2:9939856-9939875 Msa1048330:intron 25.0%
! TATTCTCTCAAATTATTACC+GGG + chr7_2:9939857-9939876 Msa1048330:intron 25.0%
!! TTGTTGTTACTTGTTAGAAT+TGG + chr7_2:9940207-9940226 Msa1048330:intron 25.0%
! ATCTCATATTTCAGTATTTG+AGG + chr7_2:9940246-9940265 Msa1048330:intron 25.0%
!! ACTTGTATATCAGGATATTT+TGG + chr7_2:9940308-9940327 Msa1048330:intron 25.0%
!!! GATATTTTGGATTATGTTCA+AGG + chr7_2:9940321-9940340 Msa1048330:CDS 25.0%
!! GGTGAAATTTTATATATTCC+CGG + chr7_2:9940345-9940364 Msa1048330:CDS 25.0%
! ATAAAAGTTGACACTTACTT+CGG - chr7_2:9940385-9940404 None:intergenic 25.0%
! TTTGACTGTCTATAAGAATT+AGG + chr7_2:9940466-9940485 Msa1048330:intron 25.0%
! GAGAGAATAAACTAAAGTTA+GGG - chr7_2:9940530-9940549 None:intergenic 25.0%
!! GACTGTTTTATATACGAAAA+TGG - chr7_2:9940604-9940623 None:intergenic 25.0%
!! CTGAAAGTTTGTTTATATGT+GGG + chr7_2:9940943-9940962 Msa1048330:intron 25.0%
! AAAAATTGCAAATGACTTTG+CGG - chr7_2:9941270-9941289 None:intergenic 25.0%
!! AAGTCATTTGCAATTTTTGA+TGG + chr7_2:9941272-9941291 Msa1048330:intron 25.0%
!! AGTCATTTGCAATTTTTGAT+GGG + chr7_2:9941273-9941292 Msa1048330:intron 25.0%
! GACACATCTATAAAATCATT+TGG - chr7_2:9941329-9941348 None:intergenic 25.0%
!! CTTTCAGCTTAGAAAATTTT+CGG - chr7_2:9941406-9941425 None:intergenic 25.0%
!!! GGATCTTAGTGAAAATTTTT+TGG + chr7_2:9941433-9941452 Msa1048330:intron 25.0%
!! TTTAACTCGTTTTCAACAAA+TGG + chr7_2:9941670-9941689 Msa1048330:intron 25.0%
! AATTTAACTACATTGCATAG+CGG - chr7_2:9942111-9942130 None:intergenic 25.0%
!! TTTAAGATTCTTCAATATCG+AGG - chr7_2:9942221-9942240 None:intergenic 25.0%
! GATATTGAAGAATCTTAAAG+TGG + chr7_2:9942222-9942241 Msa1048330:intron 25.0%
!! AAAGAAATCAGAGAGTATAA+AGG - chr7_2:9942314-9942333 None:intergenic 25.0%
!!! ATTTGAGTGATTTTAAGTTC+CGG + chr7_2:9942523-9942542 Msa1048330:intron 25.0%
!!! AACAGAATAAGAGGTTTTTT+TGG + chr7_2:9942556-9942575 Msa1048330:intron 25.0%
! TTAATTTAACGGTCTACAAT+TGG - chr7_2:9942835-9942854 None:intergenic 25.0%
! TTCTAACTCTCTTAATCTAA+CGG + chr7_2:9942866-9942885 Msa1048330:intron 25.0%
!!! ATTTGAGGTAAATTTTCCAA+TGG - chr7_2:9943043-9943062 None:intergenic 25.0%
! TTGAATCTACAAACAATTTG+AGG - chr7_2:9943058-9943077 None:intergenic 25.0%
! CAAATTGTTTGTAGATTCAA+TGG + chr7_2:9943058-9943077 Msa1048330:intron 25.0%
! TTCAATGGAGGAATATATTA+TGG + chr7_2:9943073-9943092 Msa1048330:CDS 25.0%
! TCAATGGAGGAATATATTAT+GGG + chr7_2:9943074-9943093 Msa1048330:CDS 25.0%
! AGATGCTATATTTGATAAAG+AGG + chr7_2:9943121-9943140 Msa1048330:CDS 25.0%
AATGAAAGCAAAGAAGAAAG+TGG - chr7_2:9937091-9937110 None:intergenic 30.0%
! GGTCCCTTATAATTTTCATA+TGG + chr7_2:9937186-9937205 Msa1048330:intron 30.0%
! GTCAACACGTAATCAATTTT+TGG + chr7_2:9937333-9937352 Msa1048330:intron 30.0%
!!! GTAATCAATTTTTGGGATCA+GGG + chr7_2:9937341-9937360 Msa1048330:intron 30.0%
! TAGTACTTGATGCAATTTTG+TGG + chr7_2:9937390-9937409 Msa1048330:intron 30.0%
TGACAAGAAAATGACAGATA+TGG + chr7_2:9937647-9937666 Msa1048330:intron 30.0%
AAGTGCACATAAAATCTTTG+TGG + chr7_2:9937955-9937974 Msa1048330:intron 30.0%
AAGTCTATAGTTGCTTGAAT+AGG + chr7_2:9938234-9938253 Msa1048330:intron 30.0%
! GACTAATCCTCTTTCAATTT+TGG - chr7_2:9938295-9938314 None:intergenic 30.0%
TCCATGTTATAAGGAGTTAA+AGG + chr7_2:9938453-9938472 Msa1048330:intron 30.0%
TCCTTTAACTCCTTATAACA+TGG - chr7_2:9938457-9938476 None:intergenic 30.0%
TTATAAGGAGTTAAAGGAAC+TGG + chr7_2:9938459-9938478 Msa1048330:intron 30.0%
TATAAGGAGTTAAAGGAACT+GGG + chr7_2:9938460-9938479 Msa1048330:intron 30.0%
AAAATTCCCAATCTCTATGT+TGG + chr7_2:9938583-9938602 Msa1048330:intron 30.0%
TGTTAAGCTCTATTTCGAAA+TGG - chr7_2:9938855-9938874 None:intergenic 30.0%
GGTTACTAATTGGATTTATG+TGG - chr7_2:9938939-9938958 None:intergenic 30.0%
ATGTGAAGAAAACAAAGATG+TGG - chr7_2:9939069-9939088 None:intergenic 30.0%
! TTGTTTTCTTCACATGTAGT+TGG + chr7_2:9939074-9939093 Msa1048330:intron 30.0%
! AATTTGCTTCTTGTTTGTGT+AGG + chr7_2:9939189-9939208 Msa1048330:intron 30.0%
TTCGTCAGTGTTATATCAAA+TGG + chr7_2:9939297-9939316 Msa1048330:intron 30.0%
! TTTTCCACAGTCATAAACTT+CGG - chr7_2:9939329-9939348 None:intergenic 30.0%
ATTTGGTTACATTACAGCAT+CGG - chr7_2:9939390-9939409 None:intergenic 30.0%
ATTGTCGCATAAGTTAAGAT+AGG + chr7_2:9939505-9939524 Msa1048330:intron 30.0%
TTGTCGCATAAGTTAAGATA+GGG + chr7_2:9939506-9939525 Msa1048330:intron 30.0%
TGGTAAAATCTTACTGTATG+TGG + chr7_2:9939588-9939607 Msa1048330:intron 30.0%
AAATCTTACTGTATGTGGTT+TGG + chr7_2:9939593-9939612 Msa1048330:intron 30.0%
ATTTCAATAGTTAGAGGTAG+AGG + chr7_2:9939674-9939693 Msa1048330:intron 30.0%
TTTCAATAGTTAGAGGTAGA+GGG + chr7_2:9939675-9939694 Msa1048330:intron 30.0%
!! CTTTTTAATGATTTGGCCTA+TGG - chr7_2:9939714-9939733 None:intergenic 30.0%
ATTCTCTCAAATTATTACCG+GGG + chr7_2:9939858-9939877 Msa1048330:intron 30.0%
ATTGGTAAGACATCATAGTA+TGG - chr7_2:9940272-9940291 None:intergenic 30.0%
! ATTTTGGATTATGTTCAAGG+TGG + chr7_2:9940324-9940343 Msa1048330:CDS 30.0%
TTATAGACAGTCAAATGCAA+TGG - chr7_2:9940461-9940480 None:intergenic 30.0%
GGAGAGAATAAACTAAAGTT+AGG - chr7_2:9940531-9940550 None:intergenic 30.0%
!! TATACGAAAATGGATTAGGA+TGG - chr7_2:9940594-9940613 None:intergenic 30.0%
TATATAAAACAGTCCAAGAC+TGG + chr7_2:9940610-9940629 Msa1048330:intron 30.0%
ACATTCTGTAGAAAAGCAAA+TGG - chr7_2:9940659-9940678 None:intergenic 30.0%
!! AATTTACTTTGGGAGGTATT+GGG - chr7_2:9940850-9940869 None:intergenic 30.0%
AATCTCAAATTGACGAGTTT+AGG + chr7_2:9940878-9940897 Msa1048330:intron 30.0%
ATCTCAAATTGACGAGTTTA+GGG + chr7_2:9940879-9940898 Msa1048330:intron 30.0%
CCACATATAAACAAACTTTC+AGG - chr7_2:9940945-9940964 None:intergenic 30.0%
! CCTGAAAGTTTGTTTATATG+TGG + chr7_2:9940942-9940961 Msa1048330:intron 30.0%
! AAAGTTTGTTTATATGTGGG+AGG + chr7_2:9940946-9940965 Msa1048330:intron 30.0%
ACAAGATAGATTTCCAAACT+GGG - chr7_2:9941073-9941092 None:intergenic 30.0%
TTGATGGGAACAAATTATTG+AGG + chr7_2:9941288-9941307 Msa1048330:intron 30.0%
ACAAATTATTGAGGATGTCT+AGG + chr7_2:9941297-9941316 Msa1048330:intron 30.0%
! TAAATGCAACACATTTGCTA+TGG + chr7_2:9941463-9941482 Msa1048330:intron 30.0%
GAGTAACCTATGTAACAAAA+TGG + chr7_2:9941571-9941590 Msa1048330:intron 30.0%
! GATCATCCATTTTGTTACAT+AGG - chr7_2:9941580-9941599 None:intergenic 30.0%
TTCAACGTAATCATATGTGT+CGG - chr7_2:9941831-9941850 None:intergenic 30.0%
!! TTGTACTAAATAGTGGATTG+CGG + chr7_2:9942062-9942081 Msa1048330:intron 30.0%
TTTAACAACACTGCATTGAA+TGG + chr7_2:9942188-9942207 Msa1048330:intron 30.0%
TTAACAACACTGCATTGAAT+GGG + chr7_2:9942189-9942208 Msa1048330:intron 30.0%
ACCTCTTATTCTGTTATAGA+CGG - chr7_2:9942551-9942570 None:intergenic 30.0%
! ACAGTGATATCTGAGAATTT+TGG - chr7_2:9942603-9942622 None:intergenic 30.0%
! TTATTTCTCATTCTCAACGT+TGG + chr7_2:9942719-9942738 Msa1048330:intron 30.0%
!!! CAGGATCAATTTTGCTTTTT+AGG + chr7_2:9942922-9942941 Msa1048330:intron 30.0%
TTGTGTCTATCAAACATGTA+TGG - chr7_2:9942988-9943007 None:intergenic 30.0%
ATTGTTTGTAGATTCAATGG+AGG + chr7_2:9943061-9943080 Msa1048330:intron 30.0%
TTGACATTGGTACATGGTTA+AGG - chr7_2:9936897-9936916 None:intergenic 35.0%
TAACCATGTACCAATGTCAA+TGG + chr7_2:9936897-9936916 Msa1048330:CDS 35.0%
AAGAAGACAACCATTGACAT+TGG - chr7_2:9936910-9936929 None:intergenic 35.0%
TGTCTTCTTCAACTTCTTCT+AGG + chr7_2:9936921-9936940 Msa1048330:CDS 35.0%
TGACACCAGAATTCTTGATT+TGG - chr7_2:9937036-9937055 None:intergenic 35.0%
AAAGCAAAGAAGAAAGTGGA+AGG - chr7_2:9937087-9937106 None:intergenic 35.0%
!!! CGTAATCAATTTTTGGGATC+AGG + chr7_2:9937340-9937359 Msa1048330:intron 35.0%
! TCGATTGAAAGTATGTTGAG+TGG + chr7_2:9937532-9937551 Msa1048330:intron 35.0%
ACACAATAATGACATGTGTG+TGG + chr7_2:9937558-9937577 Msa1048330:intron 35.0%
AGATTGTAAGTGTGTTTGAG+TGG + chr7_2:9937804-9937823 Msa1048330:intron 35.0%
! TTGGTGGTATTCAACATATG+AGG + chr7_2:9938175-9938194 Msa1048330:intron 35.0%
TGGTATTCAACATATGAGGT+AGG + chr7_2:9938179-9938198 Msa1048330:intron 35.0%
TGATAAGCCATATGGTATCA+AGG + chr7_2:9938204-9938223 Msa1048330:intron 35.0%
CCCTTCTCATTATCAACATT+CGG - chr7_2:9938362-9938381 None:intergenic 35.0%
!! CCGAATGTTGATAATGAGAA+GGG + chr7_2:9938359-9938378 Msa1048330:intron 35.0%
!!! AATGAGAAGGGTATTTTACC+TGG + chr7_2:9938371-9938390 Msa1048330:intron 35.0%
ATGTCCATGATCAGCAAAAA+GGG - chr7_2:9938427-9938446 None:intergenic 35.0%
AGTAAGCCAACATAGAGATT+GGG - chr7_2:9938592-9938611 None:intergenic 35.0%
AAGTAAGCCAACATAGAGAT+TGG - chr7_2:9938593-9938612 None:intergenic 35.0%
ACTTACATATAGTGCAGAAG+TGG + chr7_2:9938623-9938642 Msa1048330:intron 35.0%
GAATTGCTTCAGATCCTATT+CGG + chr7_2:9938798-9938817 Msa1048330:intron 35.0%
CTCTATTTCGAAATGGCATA+AGG - chr7_2:9938848-9938867 None:intergenic 35.0%
GCTTAACAGTGATACACTAT+CGG + chr7_2:9938867-9938886 Msa1048330:intron 35.0%
! GGCAATATGATGAGTTTTCA+TGG - chr7_2:9938918-9938937 None:intergenic 35.0%
GTGTGGAATCAAATAAGGTT+AGG - chr7_2:9939140-9939159 None:intergenic 35.0%
! GGAAAGTGTGGAATCAAATA+AGG - chr7_2:9939145-9939164 None:intergenic 35.0%
AGCATCCTAGAATAACTCTA+GGG + chr7_2:9939233-9939252 Msa1048330:CDS 35.0%
!! GAAAGCTTTTGAGAGAAAAG+TGG + chr7_2:9939537-9939556 Msa1048330:intron 35.0%
CGCATATACTGTAGAAAAGA+TGG + chr7_2:9939568-9939587 Msa1048330:intron 35.0%
!! CTGTAGAAGCATTAGTATGA+AGG + chr7_2:9939633-9939652 Msa1048330:intron 35.0%
! ACACTTTCAATCAGGAGTAT+TGG - chr7_2:9939793-9939812 None:intergenic 35.0%
GCAAAAACTGCAATTAATGC+CGG + chr7_2:9940070-9940089 Msa1048330:CDS 35.0%
CAAAAACTGCAATTAATGCC+GGG + chr7_2:9940071-9940090 Msa1048330:CDS 35.0%
AAAAACTGCAATTAATGCCG+GGG + chr7_2:9940072-9940091 Msa1048330:CDS 35.0%
ACTCATTAGAAATTTAGCCC+CGG - chr7_2:9940092-9940111 None:intergenic 35.0%
AATGAGTCCTGCAAATGTTA+AGG + chr7_2:9940105-9940124 Msa1048330:CDS 35.0%
TTTCGAACCTTAACATTTGC+AGG - chr7_2:9940115-9940134 None:intergenic 35.0%
GGATTGAGCATTTATATTGC+AGG - chr7_2:9940440-9940459 None:intergenic 35.0%
! ACATTTTACTACTCCAGTCT+TGG - chr7_2:9940626-9940645 None:intergenic 35.0%
ATATTGTCTGCATATGATGC+AGG + chr7_2:9940708-9940727 Msa1048330:CDS 35.0%
ATATGATGCAGGTGCTAAAA+TGG + chr7_2:9940719-9940738 Msa1048330:CDS 35.0%
! GAATTTACTTTGGGAGGTAT+TGG - chr7_2:9940851-9940870 None:intergenic 35.0%
TATGAAGCACAAATACTCCT+CGG + chr7_2:9941036-9941055 Msa1048330:intron 35.0%
GACAAGATAGATTTCCAAAC+TGG - chr7_2:9941074-9941093 None:intergenic 35.0%
! AAAATAGGGAAAAGGCATGT+GGG - chr7_2:9941155-9941174 None:intergenic 35.0%
! AAAAATAGGGAAAAGGCATG+TGG - chr7_2:9941156-9941175 None:intergenic 35.0%
! TTTTATAGATGTGTCGGAAG+TGG + chr7_2:9941334-9941353 Msa1048330:intron 35.0%
TTCTAAGCTGAAAGAGCTTT+CGG + chr7_2:9941412-9941431 Msa1048330:intron 35.0%
GTAACAAAATGGATGATCAG+TGG + chr7_2:9941582-9941601 Msa1048330:intron 35.0%
! CTCGTTTTCAACAAATGGAT+AGG + chr7_2:9941675-9941694 Msa1048330:intron 35.0%
!! TCCAGACTTTTGTTATACGT+GGG - chr7_2:9941793-9941812 None:intergenic 35.0%
!! ATCCAGACTTTTGTTATACG+TGG - chr7_2:9941794-9941813 None:intergenic 35.0%
TGAATCAGTGTTGTCAATTG+AGG + chr7_2:9941968-9941987 Msa1048330:intron 35.0%
TGCAAAAACCGCAATTAATG+CGG + chr7_2:9942157-9942176 Msa1048330:intron 35.0%
TTCTAAATATGCAAGGTAGG+AGG - chr7_2:9942264-9942283 None:intergenic 35.0%
!! CAGTTCTAAATATGCAAGGT+AGG - chr7_2:9942267-9942286 None:intergenic 35.0%
!! CAGACAGTTCTAAATATGCA+AGG - chr7_2:9942271-9942290 None:intergenic 35.0%
GAGTGCATTCTATGTTAACT+TGG + chr7_2:9942351-9942370 Msa1048330:intron 35.0%
ATTTATCCAGTTTCAGCACT+TGG + chr7_2:9942389-9942408 Msa1048330:CDS 35.0%
ACCATAGAAACATGAGGAAA+GGG - chr7_2:9942446-9942465 None:intergenic 35.0%
AACCATAGAAACATGAGGAA+AGG - chr7_2:9942447-9942466 None:intergenic 35.0%
!!! TTTTTTGGAGCATCTAGACT+TGG + chr7_2:9942760-9942779 Msa1048330:intron 35.0%
TTAATCTAACGGTTTGTAGC+CGG + chr7_2:9942877-9942896 Msa1048330:intron 35.0%
GCAGATTAAGTTAACACCAT+TGG + chr7_2:9943024-9943043 Msa1048330:intron 35.0%
ATGGAGGAATATATTATGGG+AGG + chr7_2:9943077-9943096 Msa1048330:CDS 35.0%
! AATGTCACTTATTCACAGCT+TGG - chr7_2:9943211-9943230 None:intergenic 35.0%
CAACCATTGACATTGGTACA+TGG - chr7_2:9936903-9936922 None:intergenic 40.0%
! GAGTGTTTTATCAACTGTGG+TGG - chr7_2:9937011-9937030 None:intergenic 40.0%
!! GCAGAGTGTTTTATCAACTG+TGG - chr7_2:9937014-9937033 None:intergenic 40.0%
CTCTGCCAAATCAAGAATTC+TGG + chr7_2:9937028-9937047 Msa1048330:CDS 40.0%
CAAAGAAGAAAGTGGAAGGT+GGG - chr7_2:9937083-9937102 None:intergenic 40.0%
CCTCAAAGTTTACTAGGAGA+GGG - chr7_2:9937295-9937314 None:intergenic 40.0%
CCTCTCCTAGTAAACTTTGA+GGG + chr7_2:9937293-9937312 Msa1048330:intron 40.0%
TCAGTCCCTCAAAGTTTACT+AGG - chr7_2:9937301-9937320 None:intergenic 40.0%
TTGTAAGTGTGTTTGAGTGG+CGG + chr7_2:9937807-9937826 Msa1048330:intron 40.0%
! TTTTATCGATGTGTGCGTGT+TGG + chr7_2:9937887-9937906 Msa1048330:intron 40.0%
GATGAAAAGGGAGAACACTT+TGG + chr7_2:9938156-9938175 Msa1048330:intron 40.0%
GGTAGGTTTGATAAGCCATA+TGG + chr7_2:9938196-9938215 Msa1048330:intron 40.0%
CGCAAATCCTTGATACCATA+TGG - chr7_2:9938214-9938233 None:intergenic 40.0%
! CAGAGTGCCAAAATTGAAAG+AGG + chr7_2:9938285-9938304 Msa1048330:intron 40.0%
!! GCCGAATGTTGATAATGAGA+AGG + chr7_2:9938358-9938377 Msa1048330:intron 40.0%
! CATTCCCTTTTTGCTGATCA+TGG + chr7_2:9938420-9938439 Msa1048330:intron 40.0%
CATGTCCATGATCAGCAAAA+AGG - chr7_2:9938428-9938447 None:intergenic 40.0%
CCTCAAAAACAAGGAAAGTG+TGG - chr7_2:9939157-9939176 None:intergenic 40.0%
!!! CCACACTTTCCTTGTTTTTG+AGG + chr7_2:9939154-9939173 Msa1048330:intron 40.0%
GAGCATCCTAGAATAACTCT+AGG + chr7_2:9939232-9939251 Msa1048330:CDS 40.0%
GCATCCTAGAATAACTCTAG+GGG + chr7_2:9939234-9939253 Msa1048330:CDS 40.0%
CATACCCCTAGAGTTATTCT+AGG - chr7_2:9939241-9939260 None:intergenic 40.0%
CACAGTCATAAACTTCGGTT+TGG - chr7_2:9939324-9939343 None:intergenic 40.0%
CAAACCGAAGTTTATGACTG+TGG + chr7_2:9939322-9939341 Msa1048330:intron 40.0%
TTGATATTACTAGCGTGCAC+AGG + chr7_2:9939421-9939440 Msa1048330:intron 40.0%
!! CTTTTGAGAGAAAAGTGGAG+TGG + chr7_2:9939542-9939561 Msa1048330:intron 40.0%
! GTCGGTGCTTCATAACATTA+TGG + chr7_2:9939912-9939931 Msa1048330:intron 40.0%
TGAGAACAGTTCCAACCTAA+GGG - chr7_2:9940039-9940058 None:intergenic 40.0%
AAGTTGACACTTACTTCGGT+TGG - chr7_2:9940381-9940400 None:intergenic 40.0%
TACAAAACCAGCTAGTAAGG+CGG - chr7_2:9940978-9940997 None:intergenic 40.0%
TCCTACAAAACCAGCTAGTA+AGG - chr7_2:9940981-9941000 None:intergenic 40.0%
ATAGATTTCCAAACTGGGAC+AGG - chr7_2:9941068-9941087 None:intergenic 40.0%
! AAATAGGGAAAAGGCATGTG+GGG - chr7_2:9941154-9941173 None:intergenic 40.0%
!! GAAGTTGACTTTGCTTTTGC+CGG + chr7_2:9941499-9941518 Msa1048330:intron 40.0%
!! CCAGACTTTTGTTATACGTG+GGG - chr7_2:9941792-9941811 None:intergenic 40.0%
ACAAACTCAGACATTGAGAC+CGG - chr7_2:9941904-9941923 None:intergenic 40.0%
ATAGTCCAGTTATGAGTGTG+AGG + chr7_2:9941933-9941952 Msa1048330:intron 40.0%
TAGTCCAGTTATGAGTGTGA+GGG + chr7_2:9941934-9941953 Msa1048330:intron 40.0%
GTGTTGTCAATTGAGGATTG+CGG + chr7_2:9941975-9941994 Msa1048330:intron 40.0%
TTTGCAGGAGTCATTAGGAT+AGG - chr7_2:9942143-9942162 None:intergenic 40.0%
! GCATTAATTGCGGTTTTTGC+AGG - chr7_2:9942158-9942177 None:intergenic 40.0%
GCAAAAACCGCAATTAATGC+GGG + chr7_2:9942158-9942177 Msa1048330:intron 40.0%
TTTAGCACCCGCATTAATTG+CGG - chr7_2:9942168-9942187 None:intergenic 40.0%
GAAGCAACCATAGAAACATG+AGG - chr7_2:9942452-9942471 None:intergenic 40.0%
! TGTTTCTATGGTTGCTTCTC+AGG + chr7_2:9942454-9942473 Msa1048330:CDS 40.0%
GTTTCTATGGTTGCTTCTCA+GGG + chr7_2:9942455-9942474 Msa1048330:CDS 40.0%
GCTTCTCAGGGAATAACAAT+AGG + chr7_2:9942467-9942486 Msa1048330:CDS 40.0%
TATTCTGTTATAGACGGCAC+CGG - chr7_2:9942545-9942564 None:intergenic 40.0%
GCCGTCTATAACAGAATAAG+AGG + chr7_2:9942547-9942566 Msa1048330:intron 40.0%
ATAATTGCACAGGTGCATCA+CGG + chr7_2:9942678-9942697 Msa1048330:intron 40.0%
! AACCTGTTTTATCGTGCATC+CGG - chr7_2:9942899-9942918 None:intergenic 40.0%
CACGATAAAACAGGTTTCAC+AGG + chr7_2:9942903-9942922 Msa1048330:intron 40.0%
CATGTAACCCTGCTAGGATT+AGG - chr7_2:9936953-9936972 None:intergenic 45.0%
ACTTTGCATGTAACCCTGCT+AGG - chr7_2:9936959-9936978 None:intergenic 45.0%
TTGCTTGTCTCAGAGCCAAT+AGG + chr7_2:9937056-9937075 Msa1048330:CDS 45.0%
GCAAAGAAGAAAGTGGAAGG+TGG - chr7_2:9937084-9937103 None:intergenic 45.0%
CCCTCTCCTAGTAAACTTTG+AGG + chr7_2:9937292-9937311 Msa1048330:intron 45.0%
CCCTCAAAGTTTACTAGGAG+AGG - chr7_2:9937296-9937315 None:intergenic 45.0%
!!! TTTTTGGGATCAGGGCAAGA+TGG + chr7_2:9937349-9937368 Msa1048330:intron 45.0%
!!! TTTTGGGATCAGGGCAAGAT+GGG + chr7_2:9937350-9937369 Msa1048330:intron 45.0%
TCACACGACAATGACACATG+CGG + chr7_2:9937459-9937478 Msa1048330:intron 45.0%
CACACATGTCATGGTTGTGT+AGG - chr7_2:9937735-9937754 None:intergenic 45.0%
CTACACAACCATGACATGTG+TGG + chr7_2:9937733-9937752 Msa1048330:intron 45.0%
GTATCTAGCCACACATGTCA+TGG - chr7_2:9937744-9937763 None:intergenic 45.0%
GAAAAGGGAGAACACTTTGG+TGG + chr7_2:9938159-9938178 Msa1048330:intron 45.0%
ATATAGTGCAGAAGTGGCCT+TGG + chr7_2:9938629-9938648 Msa1048330:intron 45.0%
TTCTCTCGAGATGACCGAAT+AGG - chr7_2:9938815-9938834 None:intergenic 45.0%
GAGATTGTGATGTCTACTCC+AGG + chr7_2:9939096-9939115 Msa1048330:CDS 45.0%
TTACCAACCTCAAACACACC+TGG - chr7_2:9939117-9939136 None:intergenic 45.0%
TGTGTAGGTTCTACAACAGC+TGG + chr7_2:9939204-9939223 Msa1048330:intron 45.0%
CTCAACAGATATCTGCCCTT+AGG + chr7_2:9940021-9940040 Msa1048330:intron 45.0%
ACAGATATCTGCCCTTAGGT+TGG + chr7_2:9940025-9940044 Msa1048330:intron 45.0%
CTGAGAACAGTTCCAACCTA+AGG - chr7_2:9940040-9940059 None:intergenic 45.0%
!! CTTAGGTTGGAACTGTTCTC+AGG + chr7_2:9940038-9940057 Msa1048330:intron 45.0%
TGGAACTGTTCTCAGGATTG+AGG + chr7_2:9940045-9940064 Msa1048330:CDS 45.0%
TTCGGTTGGAGTCATTGTTC+CGG - chr7_2:9940367-9940386 None:intergenic 45.0%
TGCAGGTGCTAAAATGGTCA+AGG + chr7_2:9940725-9940744 Msa1048330:CDS 45.0%
!! GGGAGGTATTGGGAAGAAAT+TGG - chr7_2:9940840-9940859 None:intergenic 45.0%
ACAAAACCAGCTAGTAAGGC+GGG - chr7_2:9940977-9940996 None:intergenic 45.0%
!!! GCCTTACTAGCTGGTTTTGT+AGG + chr7_2:9940977-9940996 Msa1048330:intron 45.0%
GCACAAATACTCCTCGGATT+AGG + chr7_2:9941042-9941061 Msa1048330:intron 45.0%
! GTTGCACATATGGGCTATGT+GGG + chr7_2:9941121-9941140 Msa1048330:intron 45.0%
! TTGCACATATGGGCTATGTG+GGG + chr7_2:9941122-9941141 Msa1048330:intron 45.0%
CCCCACGTATAACAAAAGTC+TGG + chr7_2:9941789-9941808 Msa1048330:intron 45.0%
!! TCATATGTGTCGGTGTCACA+GGG - chr7_2:9941821-9941840 None:intergenic 45.0%
!! ATCATATGTGTCGGTGTCAC+AGG - chr7_2:9941822-9941841 None:intergenic 45.0%
CTCTGTCGTGTAGTGTAACT+TGG - chr7_2:9942016-9942035 None:intergenic 45.0%
! CGGTTTTTGCAGGAGTCATT+AGG - chr7_2:9942148-9942167 None:intergenic 45.0%
TATGCAAGGTAGGAGGAACT+CGG - chr7_2:9942257-9942276 None:intergenic 45.0%
TATCCAGTTTCAGCACTTGG+AGG + chr7_2:9942392-9942411 Msa1048330:CDS 45.0%
!! AATCCTCCAAGTGCTGAAAC+TGG - chr7_2:9942398-9942417 None:intergenic 45.0%
! GCCCTTTCCTCATGTTTCTA+TGG + chr7_2:9942442-9942461 Msa1048330:CDS 45.0%
TGCACAAACTGCTACCTTGT+TGG + chr7_2:9943181-9943200 Msa1048330:CDS 45.0%
GCACAAACTGCTACCTTGTT+GGG + chr7_2:9943182-9943201 Msa1048330:CDS 45.0%
!!! TATTTAAATTTTTCTTTTTT+TGG + chr7_2:9942745-9942764 Msa1048330:intron 5.0%
GGTTAAGGTTGTCCTTGCAG+AGG - chr7_2:9936882-9936901 None:intergenic 50.0%
GCGTCTTCCTAATCCTAGCA+GGG + chr7_2:9936943-9936962 Msa1048330:CDS 50.0%
!! GTGGTGGATACTGAAAGCTG+AGG - chr7_2:9936995-9937014 None:intergenic 50.0%
AAGTGGAAGGTGGGACCTAT+TGG - chr7_2:9937074-9937093 None:intergenic 50.0%
AAGGAACTGGGTTCGAACTC+AGG + chr7_2:9938472-9938491 Msa1048330:intron 50.0%
TGCAGCATTTGCAGCTTCCA+AGG - chr7_2:9938649-9938668 None:intergenic 50.0%
GCTGCAAATGCTGCAATAGC+AGG + chr7_2:9938654-9938673 Msa1048330:CDS 50.0%
GCAAATGCTGCAATAGCAGG+TGG + chr7_2:9938657-9938676 Msa1048330:CDS 50.0%
GTCTACTCCAGGTGTGTTTG+AGG + chr7_2:9939107-9939126 Msa1048330:CDS 50.0%
! ACTCCAGGTGTGTTTGAGGT+TGG + chr7_2:9939111-9939130 Msa1048330:intron 50.0%
GGTTCTACAACAGCTGGTGA+AGG + chr7_2:9939210-9939229 Msa1048330:intron 50.0%
AGTTAGAGGTAGAGGGATGC+AGG + chr7_2:9939682-9939701 Msa1048330:intron 50.0%
GTTAGAGGTAGAGGGATGCA+GGG + chr7_2:9939683-9939702 Msa1048330:intron 50.0%
TTAGAGGTAGAGGGATGCAG+GGG + chr7_2:9939684-9939703 Msa1048330:intron 50.0%
! CTCCTGATTGAAAGTGTGCC+TGG + chr7_2:9939796-9939815 Msa1048330:intron 50.0%
CACCAGGCACACTTTCAATC+AGG - chr7_2:9939801-9939820 None:intergenic 50.0%
! CAACGTGATAGTGCCGTGTT+CGG + chr7_2:9939882-9939901 Msa1048330:intron 50.0%
ACCGACACAGATACCGAACA+CGG - chr7_2:9939898-9939917 None:intergenic 50.0%
CATTGCGATTTCGCACAAGC+AGG - chr7_2:9940170-9940189 None:intergenic 50.0%
TCGGTTGGAGTCATTGTTCC+GGG - chr7_2:9940366-9940385 None:intergenic 50.0%
! GGTTGCACATATGGGCTATG+TGG + chr7_2:9941120-9941139 Msa1048330:intron 50.0%
TCAACACTTGCAGTTGCTGC+CGG - chr7_2:9941521-9941540 None:intergenic 50.0%
!! CATATGTGTCGGTGTCACAG+GGG - chr7_2:9941820-9941839 None:intergenic 50.0%
TCCAGTTATGAGTGTGAGGG+AGG + chr7_2:9941937-9941956 Msa1048330:intron 50.0%
ACCTCCCTCACACTCATAAC+TGG - chr7_2:9941941-9941960 None:intergenic 50.0%
GCATCTAGACTTGGATCGTC+TGG + chr7_2:9942769-9942788 Msa1048330:intron 50.0%
! AGACTTGGATCGTCTGGAGT+CGG + chr7_2:9942775-9942794 Msa1048330:intron 50.0%
AGCCGGATGCACGATAAAAC+AGG + chr7_2:9942894-9942913 Msa1048330:intron 50.0%
CACAGCTTGGTTACCCAACA+AGG - chr7_2:9943198-9943217 None:intergenic 50.0%
GGCGTCTTCCTAATCCTAGC+AGG + chr7_2:9936942-9936961 Msa1048330:CDS 55.0%
CTGGGTTCGAACTCAGGTGA+AGG + chr7_2:9938478-9938497 Msa1048330:intron 55.0%
GGGATGCAGGGGAAAACCAT+AGG + chr7_2:9939695-9939714 Msa1048330:intron 55.0%
GTGTGTCAGTGTCAGACACC+AGG - chr7_2:9939817-9939836 None:intergenic 55.0%
GTGTCTGACACTGACACACG+TGG + chr7_2:9939818-9939837 Msa1048330:intron 55.0%
GCCGTGTTCGGTATCTGTGT+CGG + chr7_2:9939894-9939913 Msa1048330:intron 55.0%
GGATTAGGCCTGTCCCAGTT+TGG + chr7_2:9941057-9941076 Msa1048330:intron 55.0%
!! CTGCGGTGTCATGTCAGTGT+CGG - chr7_2:9941096-9941115 None:intergenic 55.0%
GACACTGACATGACACCGCA+GGG + chr7_2:9941095-9941114 Msa1048330:intron 55.0%
ACACTGACATGACACCGCAG+GGG + chr7_2:9941096-9941115 Msa1048330:intron 55.0%
GTAGGAGGAACTCGGACACT+TGG - chr7_2:9942249-9942268 None:intergenic 55.0%
TGGGATCAGGGCAAGATGGG+AGG + chr7_2:9937353-9937372 Msa1048330:intron 60.0%
GGGATCAGGGCAAGATGGGA+GGG + chr7_2:9937354-9937373 Msa1048330:intron 60.0%
CACGCGTGCAGACATACACC+AGG - chr7_2:9938392-9938411 None:intergenic 60.0%
CGGCACTATCACGTTGACCC+CGG - chr7_2:9939878-9939897 None:intergenic 60.0%
ACTGGGACAGGCCTAATCCG+AGG - chr7_2:9941056-9941075 None:intergenic 60.0%
CGACACTGACATGACACCGC+AGG + chr7_2:9941094-9941113 Msa1048330:intron 60.0%
CATATGTGCAACCGCCCCTG+CGG - chr7_2:9941113-9941132 None:intergenic 60.0%
GCAGGGGCGGTTGCACATAT+GGG + chr7_2:9941112-9941131 Msa1048330:intron 60.0%
!! ATGTGTCGGTGTCACAGGGG+CGG - chr7_2:9941817-9941836 None:intergenic 60.0%
CGACGTGTCTGTGTCGTGTC+CGG + chr7_2:9941882-9941901 Msa1048330:intron 60.0%
GCGTCTCCCGCCTTACTAGC+TGG + chr7_2:9940968-9940987 Msa1048330:intron 65.0%
CTGACATGACACCGCAGGGG+CGG + chr7_2:9941099-9941118 Msa1048330:intron 65.0%
CGCAGGGGCGGTTGCACATA+TGG + chr7_2:9941111-9941130 Msa1048330:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 9936875 9943293 9936875 ID=Msa1048330;Name=Msa1048330
chr7_2 mRNA 9936875 9943293 9936875 ID=Msa1048330-mRNA-1;Parent=Msa1048330;Name=Msa1048330-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.87|0.77|1|1|1|9|67|260
chr7_2 exon 9936875 9937077 9936875 ID=Msa1048330-mRNA-1:exon:2577;Parent=Msa1048330-mRNA-1
chr7_2 exon 9938635 9938689 9938635 ID=Msa1048330-mRNA-1:exon:2578;Parent=Msa1048330-mRNA-1
chr7_2 exon 9939093 9939128 9939093 ID=Msa1048330-mRNA-1:exon:2579;Parent=Msa1048330-mRNA-1
chr7_2 exon 9939211 9939255 9939211 ID=Msa1048330-mRNA-1:exon:2580;Parent=Msa1048330-mRNA-1
chr7_2 exon 9940043 9940126 9940043 ID=Msa1048330-mRNA-1:exon:2581;Parent=Msa1048330-mRNA-1
chr7_2 exon 9940321 9940386 9940321 ID=Msa1048330-mRNA-1:exon:2582;Parent=Msa1048330-mRNA-1
chr7_2 exon 9940708 9940746 9940708 ID=Msa1048330-mRNA-1:exon:2583;Parent=Msa1048330-mRNA-1
chr7_2 exon 9942389 9942488 9942389 ID=Msa1048330-mRNA-1:exon:2584;Parent=Msa1048330-mRNA-1
chr7_2 exon 9943072 9943293 9943072 ID=Msa1048330-mRNA-1:exon:2585;Parent=Msa1048330-mRNA-1
chr7_2 CDS 9936875 9937077 9936875 ID=Msa1048330-mRNA-1:cds;Parent=Msa1048330-mRNA-1
chr7_2 CDS 9938635 9938689 9938635 ID=Msa1048330-mRNA-1:cds;Parent=Msa1048330-mRNA-1
chr7_2 CDS 9939093 9939128 9939093 ID=Msa1048330-mRNA-1:cds;Parent=Msa1048330-mRNA-1
chr7_2 CDS 9939211 9939255 9939211 ID=Msa1048330-mRNA-1:cds;Parent=Msa1048330-mRNA-1
chr7_2 CDS 9940043 9940126 9940043 ID=Msa1048330-mRNA-1:cds;Parent=Msa1048330-mRNA-1
chr7_2 CDS 9940321 9940386 9940321 ID=Msa1048330-mRNA-1:cds;Parent=Msa1048330-mRNA-1
chr7_2 CDS 9940708 9940746 9940708 ID=Msa1048330-mRNA-1:cds;Parent=Msa1048330-mRNA-1
chr7_2 CDS 9942389 9942488 9942389 ID=Msa1048330-mRNA-1:cds;Parent=Msa1048330-mRNA-1
chr7_2 CDS 9943072 9943226 9943072 ID=Msa1048330-mRNA-1:cds;Parent=Msa1048330-mRNA-1
chr7_2 three_prime_UTR 9943227 9943293 9943227 ID=Msa1048330-mRNA-1:three_prime_utr;Parent=Msa1048330-mRNA-1
Gene Sequence

>Msa1048330

ATGACCTCTGCAAGGACAACCTTAACCATGTACCAATGTCAATGGTTGTCTTCTTCAACTTCTTCTAGGCGTCTTCCTAATCCTAGCAGGGTTACATGCAAAGTCTCTGAGTCTCATCCTCAGCTTTCAGTATCCACCACAGTTGATAAAACACTCTGCCAAATCAAGAATTCTGGTGTCATTGCTTGTCTCAGAGCCAATAGTGCAGAAGTGGCCTTGGAAGCTGCAAATGCTGCAATAGCAGGTGGCATTTCAGTTTTGGAGATTGTGATGTCTACTCCAGGTGTGTTTGAGGTTCTACAACAGCTGGTGAAGGAGCATCCTAGAATAACTCTAGGGGTTGGAACTGTTCTCAGGATTGAGGATGCAAAAACTGCAATTAATGCCGGGGCTAAATTTCTAATGAGTCCTGCAAATGTTAAGGATATTTTGGATTATGTTCAAGGTGGTGAAATTTTATATATTCCCGGAACAATGACTCCAACCGAAATATTGTCTGCATATGATGCAGGTGCTAAAATGGTCAAGATTTATCCAGTTTCAGCACTTGGAGGATTTCAGTATATAGCAGCACTGAAGAAGCCCTTTCCTCATGTTTCTATGGTTGCTTCTCAGGGAATAACAATAGATTCAATGGAGGAATATATTATGGGAGGAGCATCAGCAGTTGTTTTGTCAGATGCTATATTTGATAAAGAGGCAATTTCTCAATGTAATTTCAGTAAGATATATAAACTTGCACAAACTGCTACCTTGTTGGGTAACCAAGCTGTGAATAAGTGA

Protein sequence

>Msa1048330

MTSARTTLTMYQCQWLSSSTSSRRLPNPSRVTCKVSESHPQLSVSTTVDKTLCQIKNSGVIACLRANSAEVALEAANAAIAGGISVLEIVMSTPGVFEVLQQLVKEHPRITLGVGTVLRIEDAKTAINAGAKFLMSPANVKDILDYVQGGEILYIPGTMTPTEILSAYDAGAKMVKIYPVSALGGFQYIAALKKPFPHVSMVASQGITIDSMEEYIMGGASAVVLSDAIFDKEAISQCNFSKIYKLAQTATLLGNQAVNK*