Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0818010 | Msa1006540 | 0.824303 | 8.683095e-54 | -8.615850e-47 |
| Msa1006270 | Msa1006540 | 0.834091 | 3.662500e-56 | -8.615850e-47 |
| Msa1006360 | Msa1006540 | 0.808176 | 3.522907e-50 | -8.615850e-47 |
| Msa1006540 | Msa1136010 | 0.806018 | 1.008375e-49 | -8.615850e-47 |
| Msa0533430 | Msa1006540 | 0.809662 | 1.694108e-50 | -8.615850e-47 |
| Msa0580610 | Msa1006540 | 0.802024 | 6.825174e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 10 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACAATTCTTCAAGGCTTC+AGG | 0.327361 | 7_1:+5345392 | Msa1006540:CDS |
| ATGGTGAGTGTCATGTTATT+AGG | 0.425096 | 7_1:-5345363 | None:intergenic |
| TACCTATGTACAATTCTTCA+AGG | 0.431580 | 7_1:+5345385 | Msa1006540:CDS |
| AACGACATCTCAAATTCAAA+TGG | 0.443543 | 7_1:+5348247 | Msa1006540:CDS |
| CAAATTCAAATGGAAGCAAA+TGG | 0.501602 | 7_1:+5348257 | Msa1006540:CDS |
| TGAAGAATTGTACATAGGTA+TGG | 0.521798 | 7_1:-5345382 | None:intergenic |
| TAAAATGGACACTTATGCAC+AGG | 0.522203 | 7_1:+5348970 | Msa1006540:CDS |
| AGCCTTGAAGAATTGTACAT+AGG | 0.674056 | 7_1:-5345387 | None:intergenic |
| AAAATGGACACTTATGCACA+GGG | 0.677863 | 7_1:+5348971 | Msa1006540:CDS |
| TTGAATTTGAGATGTCGTTG+TGG | 0.678992 | 7_1:-5348243 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTTATTAAAATATTA+AGG | - | chr7_1:5347756-5347775 | None:intergenic | 0.0% |
| !! | AGTTATCAAATAAATATATA+TGG | + | chr7_1:5345461-5345480 | Msa1006540:intron | 10.0% |
| !!! | TTTTTTTCATGAAATAAATT+TGG | + | chr7_1:5346181-5346200 | Msa1006540:intron | 10.0% |
| !!! | TATCTTATTTATACTTTATT+TGG | - | chr7_1:5347241-5347260 | None:intergenic | 10.0% |
| !!! | AAATTAGAAACTAAATATTT+TGG | - | chr7_1:5348158-5348177 | None:intergenic | 10.0% |
| !!! | TTTTTTTCATGAAATAAATT+TGG | + | chr7_1:5346181-5346200 | Msa1006540:intron | 10.0% |
| !! | ATTTGTTTAATTATATGTTT+AGG | + | chr7_1:5348907-5348926 | Msa1006540:intron | 10.0% |
| !! | TTAGTTTAGAAAATAGATAA+GGG | - | chr7_1:5345830-5345849 | None:intergenic | 15.0% |
| !!! | ATTAGTTTAGAAAATAGATA+AGG | - | chr7_1:5345831-5345850 | None:intergenic | 15.0% |
| !!! | TTATCTATTTTCTAAACTAA+TGG | + | chr7_1:5345830-5345849 | Msa1006540:intron | 15.0% |
| !!! | TATCTATTTTCTAAACTAAT+GGG | + | chr7_1:5345831-5345850 | Msa1006540:intron | 15.0% |
| !!! | TTGAAAATTGATTTTATGTA+TGG | + | chr7_1:5345999-5346018 | Msa1006540:intron | 15.0% |
| !! | GATAAATATTTCAAATCAAT+TGG | - | chr7_1:5346052-5346071 | None:intergenic | 15.0% |
| !! | TTAAATATATTCTGTAATAG+AGG | + | chr7_1:5347069-5347088 | Msa1006540:intron | 15.0% |
| !!! | TTATCAATCAATTTTTATCA+AGG | + | chr7_1:5347379-5347398 | Msa1006540:intron | 15.0% |
| !! | ATTTGTTTAGTTATATGTTT+AGG | + | chr7_1:5347444-5347463 | Msa1006540:intron | 15.0% |
| !! | TATATAAAAGACTTTATCAT+TGG | + | chr7_1:5347521-5347540 | Msa1006540:intron | 15.0% |
| !!! | TAATTGAAAATTTTAAAGGA+GGG | - | chr7_1:5347642-5347661 | None:intergenic | 15.0% |
| !!! | ATAATTGAAAATTTTAAAGG+AGG | - | chr7_1:5347643-5347662 | None:intergenic | 15.0% |
| !! | TGATTTATTAATAATTCTGT+GGG | + | chr7_1:5348473-5348492 | Msa1006540:intron | 15.0% |
| !!! | ATTTTGAAAAACTAAATTTG+AGG | + | chr7_1:5346131-5346150 | Msa1006540:intron | 15.0% |
| !!! | TTATCAATCAATTTTTATCA+AGG | + | chr7_1:5347379-5347398 | Msa1006540:intron | 15.0% |
| !! | GAAAAATGTGTTAAATCTTT+AGG | + | chr7_1:5345517-5345536 | Msa1006540:intron | 20.0% |
| !! | CTCATATAGTAAAAACAATT+TGG | - | chr7_1:5345663-5345682 | None:intergenic | 20.0% |
| !!! | CAAATTGTTTTTACTATATG+AGG | + | chr7_1:5345661-5345680 | Msa1006540:intron | 20.0% |
| !!! | ATCTATTTTCTAAACTAATG+GGG | + | chr7_1:5345832-5345851 | Msa1006540:intron | 20.0% |
| !!! | GTTTCAAGTTTTGAATATTT+TGG | + | chr7_1:5345854-5345873 | Msa1006540:intron | 20.0% |
| !!! | TTTGAGAAGCATAAATTTTT+TGG | + | chr7_1:5346147-5346166 | Msa1006540:intron | 20.0% |
| !! | TAACTTGAATTAAAACTACT+AGG | + | chr7_1:5346968-5346987 | Msa1006540:intron | 20.0% |
| !! | AACTTGAATTAAAACTACTA+GGG | + | chr7_1:5346969-5346988 | Msa1006540:intron | 20.0% |
| !! | TAATAGAGACTAAATTGTTT+CGG | + | chr7_1:5347287-5347306 | Msa1006540:intron | 20.0% |
| !! | TTAACGAAATATTTCATGTA+GGG | + | chr7_1:5347791-5347810 | Msa1006540:intron | 20.0% |
| !!! | TATTATTTGTTTCTAATGCA+GGG | - | chr7_1:5347842-5347861 | None:intergenic | 20.0% |
| !! | AAATAATACCTTAAAGTCTA+TGG | + | chr7_1:5347854-5347873 | Msa1006540:intron | 20.0% |
| !! | AAAAAATTCCATAGACTTTA+AGG | - | chr7_1:5347865-5347884 | None:intergenic | 20.0% |
| !! | TTCACATAACTACATTATAA+AGG | + | chr7_1:5348073-5348092 | Msa1006540:intron | 20.0% |
| !!! | TATTTAGTTTCTAATTTCTC+TGG | + | chr7_1:5348161-5348180 | Msa1006540:intron | 20.0% |
| !! | ATCAGATAGTAAAAACAATA+TGG | - | chr7_1:5348457-5348476 | None:intergenic | 20.0% |
| !! | CTGATTTATTAATAATTCTG+TGG | + | chr7_1:5348472-5348491 | Msa1006540:intron | 20.0% |
| !!! | ATTTGAGGAGAATAAAATTT+TGG | + | chr7_1:5348614-5348633 | Msa1006540:intron | 20.0% |
| ! | TTTGTTGAGTCTAAAAGAAA+TGG | - | chr7_1:5345442-5345461 | None:intergenic | 25.0% |
| !!! | ACCATGATTATACTTTTTGT+TGG | + | chr7_1:5345549-5345568 | Msa1006540:intron | 25.0% |
| !! | ACCAACAAAAAGTATAATCA+TGG | - | chr7_1:5345553-5345572 | None:intergenic | 25.0% |
| !!! | TCTTGTTCTGAAATGATATT+TGG | + | chr7_1:5345887-5345906 | Msa1006540:intron | 25.0% |
| !!! | CTTGTTCTGAAATGATATTT+GGG | + | chr7_1:5345888-5345907 | Msa1006540:intron | 25.0% |
| !!! | TTGTTCTGAAATGATATTTG+GGG | + | chr7_1:5345889-5345908 | Msa1006540:intron | 25.0% |
| !! | AAATTCACGTTTAAAATCTG+CGG | + | chr7_1:5345956-5345975 | Msa1006540:intron | 25.0% |
| !! | TGATTTTATGTATGGAAGTT+TGG | + | chr7_1:5346007-5346026 | Msa1006540:intron | 25.0% |
| ! | CTAAATTGATATATAGACTC+TGG | + | chr7_1:5346099-5346118 | Msa1006540:intron | 25.0% |
| ! | TGAAAATCAAGATCATCATT+AGG | - | chr7_1:5346285-5346304 | None:intergenic | 25.0% |
| ! | AAGCCTTTAATAATCATGAA+GGG | + | chr7_1:5346309-5346328 | Msa1006540:intron | 25.0% |
| ! | ATTCCCTTCATGATTATTAA+AGG | - | chr7_1:5346315-5346334 | None:intergenic | 25.0% |
| ! | AAAAAAGATTCAAACTTGAG+AGG | + | chr7_1:5346577-5346596 | Msa1006540:intron | 25.0% |
| ! | TTACAATCAGAATTTCTAAG+AGG | + | chr7_1:5346718-5346737 | Msa1006540:intron | 25.0% |
| !! | TACAATCAGAATTTCTAAGA+GGG | + | chr7_1:5346719-5346738 | Msa1006540:intron | 25.0% |
| !!! | TTGTTAGCTATTTTTAAGCA+AGG | - | chr7_1:5346892-5346911 | None:intergenic | 25.0% |
| ! | TATATATAAGTGTCCCTTTA+GGG | - | chr7_1:5347507-5347526 | None:intergenic | 25.0% |
| ! | TTATATATAAGTGTCCCTTT+AGG | - | chr7_1:5347508-5347527 | None:intergenic | 25.0% |
| ! | GTTAACGAAATATTTCATGT+AGG | + | chr7_1:5347790-5347809 | Msa1006540:intron | 25.0% |
| ! | TAACGAAATATTTCATGTAG+GGG | + | chr7_1:5347792-5347811 | Msa1006540:intron | 25.0% |
| !!! | ATTATTTGTTTCTAATGCAG+GGG | - | chr7_1:5347841-5347860 | None:intergenic | 25.0% |
| !!! | GTATTATTTGTTTCTAATGC+AGG | - | chr7_1:5347843-5347862 | None:intergenic | 25.0% |
| ! | GCAAAATGTGTTAAATCTTT+CGG | + | chr7_1:5348313-5348332 | Msa1006540:intron | 25.0% |
| ! | AAAATCAATTGCATTGAAAG+GGG | - | chr7_1:5348534-5348553 | None:intergenic | 25.0% |
| ! | CAAAATCAATTGCATTGAAA+GGG | - | chr7_1:5348535-5348554 | None:intergenic | 25.0% |
| ! | CTAAATTGATATATAGACTC+CGG | + | chr7_1:5346099-5346118 | Msa1006540:intron | 25.0% |
| !! | GTATAGTACTTCTTTTCATA+TGG | + | chr7_1:5348749-5348768 | Msa1006540:intron | 25.0% |
| !! | TTCAACTTTGACTTATGAAA+GGG | + | chr7_1:5348775-5348794 | Msa1006540:intron | 25.0% |
| TGAAGAATTGTACATAGGTA+TGG | - | chr7_1:5345385-5345404 | None:intergenic | 30.0% | |
| TACCTATGTACAATTCTTCA+AGG | + | chr7_1:5345385-5345404 | Msa1006540:CDS | 30.0% | |
| ATGTATTAGACACACTTCTA+TGG | + | chr7_1:5345485-5345504 | Msa1006540:intron | 30.0% | |
| TGTATTAGACACACTTCTAT+GGG | + | chr7_1:5345486-5345505 | Msa1006540:intron | 30.0% | |
| ! | TGTCTATTTTCTACTGTCTA+CGG | + | chr7_1:5345759-5345778 | Msa1006540:intron | 30.0% |
| !! | TTAAACGTGAATTTGCTACA+TGG | - | chr7_1:5345950-5345969 | None:intergenic | 30.0% |
| CAAGCCTTTAATAATCATGA+AGG | + | chr7_1:5346308-5346327 | Msa1006540:intron | 30.0% | |
| TAATCATGAAGGGAATGAAA+AGG | + | chr7_1:5346319-5346338 | Msa1006540:intron | 30.0% | |
| !! | TGGTTTTCTAGTATAGGTTT+GGG | - | chr7_1:5346618-5346637 | None:intergenic | 30.0% |
| !! | TTGGTTTTCTAGTATAGGTT+TGG | - | chr7_1:5346619-5346638 | None:intergenic | 30.0% |
| !!! | ATGAGTTGGTTTTCTAGTAT+AGG | - | chr7_1:5346624-5346643 | None:intergenic | 30.0% |
| AGAAAACCAACTCATAATCA+TGG | + | chr7_1:5346629-5346648 | Msa1006540:intron | 30.0% | |
| ! | CTTTTTCCATGATTATGAGT+TGG | - | chr7_1:5346638-5346657 | None:intergenic | 30.0% |
| ACATTGCTAATGAGAATAAC+AGG | - | chr7_1:5346792-5346811 | None:intergenic | 30.0% | |
| ! | AGTAGTTACATAGTTTGTCA+TGG | - | chr7_1:5346915-5346934 | None:intergenic | 30.0% |
| ACCACGTAAAAAGAACAATT+AGG | + | chr7_1:5347034-5347053 | Msa1006540:intron | 30.0% | |
| ! | TCCTAATTGTTCTTTTTACG+TGG | - | chr7_1:5347038-5347057 | None:intergenic | 30.0% |
| ! | TATACTTTATTTGGTTGACG+AGG | - | chr7_1:5347232-5347251 | None:intergenic | 30.0% |
| AGCCTTTACATAGAAAGAAA+TGG | + | chr7_1:5347611-5347630 | Msa1006540:intron | 30.0% | |
| GCCTTTACATAGAAAGAAAT+GGG | + | chr7_1:5347612-5347631 | Msa1006540:intron | 30.0% | |
| ACCCATTTCTTTCTATGTAA+AGG | - | chr7_1:5347616-5347635 | None:intergenic | 30.0% | |
| GGAAAGATTATTCCTTCATT+GGG | + | chr7_1:5347813-5347832 | Msa1006540:intron | 30.0% | |
| GAAAGATTATTCCTTCATTG+GGG | + | chr7_1:5347814-5347833 | Msa1006540:intron | 30.0% | |
| ATGCAGTAACATATATGTAG+CGG | + | chr7_1:5348015-5348034 | Msa1006540:intron | 30.0% | |
| !!! | GATGGTCTTTCTTCTTTTTT+GGG | + | chr7_1:5348196-5348215 | Msa1006540:intron | 30.0% |
| !!! | ATGGTCTTTCTTCTTTTTTG+GGG | + | chr7_1:5348197-5348216 | Msa1006540:intron | 30.0% |
| AACGACATCTCAAATTCAAA+TGG | + | chr7_1:5348247-5348266 | Msa1006540:CDS | 30.0% | |
| CAAATTCAAATGGAAGCAAA+TGG | + | chr7_1:5348257-5348276 | Msa1006540:CDS | 30.0% | |
| ! | ACCAACAAAAAGTGTAATCA+TGG | - | chr7_1:5348349-5348368 | None:intergenic | 30.0% |
| CCAAAATCAATTGCATTGAA+AGG | - | chr7_1:5348536-5348555 | None:intergenic | 30.0% | |
| !! | CCTTTCAATGCAATTGATTT+TGG | + | chr7_1:5348533-5348552 | Msa1006540:intron | 30.0% |
| AAGCCTTCAATAATCATGAA+GGG | + | chr7_1:5348708-5348727 | Msa1006540:intron | 30.0% | |
| ATTCCCTTCATGATTATTGA+AGG | - | chr7_1:5348714-5348733 | None:intergenic | 30.0% | |
| TAATCATGAAGGGAATGAAA+AGG | + | chr7_1:5346319-5346338 | Msa1006540:intron | 30.0% | |
| ! | CTTCAACTTTGACTTATGAA+AGG | + | chr7_1:5348774-5348793 | Msa1006540:intron | 30.0% |
| GAAAAACTTGCATCCTAAAA+TGG | + | chr7_1:5348955-5348974 | Msa1006540:CDS | 30.0% | |
| ATGGTGAGTGTCATGTTATT+AGG | - | chr7_1:5345366-5345385 | None:intergenic | 35.0% | |
| AGCCTTGAAGAATTGTACAT+AGG | - | chr7_1:5345390-5345409 | None:intergenic | 35.0% | |
| CTTGAACCTTGAGTTATTAG+AGG | + | chr7_1:5345576-5345595 | Msa1006540:intron | 35.0% | |
| TTTCAGCCTCTAATAACTCA+AGG | - | chr7_1:5345585-5345604 | None:intergenic | 35.0% | |
| TTGATATATAGACTCTGGTG+AGG | + | chr7_1:5346104-5346123 | Msa1006540:intron | 35.0% | |
| TTAGGATTACTCCCTCTATA+CGG | - | chr7_1:5346267-5346286 | None:intergenic | 35.0% | |
| ATTGCAAAACACATTGCAAG+AGG | + | chr7_1:5346398-5346417 | Msa1006540:intron | 35.0% | |
| TTGCAAAACACATTGCAAGA+GGG | + | chr7_1:5346399-5346418 | Msa1006540:intron | 35.0% | |
| ATTGATCCTCTCGAATTAGT+TGG | - | chr7_1:5346481-5346500 | None:intergenic | 35.0% | |
| ! | GTTCATATAGAGTTTTGCTC+CGG | - | chr7_1:5346537-5346556 | None:intergenic | 35.0% |
| TACCGAATAATGATTCGTGA+AGG | + | chr7_1:5346671-5346690 | Msa1006540:intron | 35.0% | |
| ACCGAATAATGATTCGTGAA+GGG | + | chr7_1:5346672-5346691 | Msa1006540:intron | 35.0% | |
| TCCCTTCACGAATCATTATT+CGG | - | chr7_1:5346676-5346695 | None:intergenic | 35.0% | |
| ATAATGATTCGTGAAGGGAA+TGG | + | chr7_1:5346677-5346696 | Msa1006540:intron | 35.0% | |
| TTGACGAGGAAAAGATAAAG+GGG | - | chr7_1:5347218-5347237 | None:intergenic | 35.0% | |
| GTTGACGAGGAAAAGATAAA+GGG | - | chr7_1:5347219-5347238 | None:intergenic | 35.0% | |
| TTTAGGAACGTAAAGTTGAC+CGG | + | chr7_1:5347461-5347480 | Msa1006540:intron | 35.0% | |
| AAGAAAAACATGCACCCTAA+AGG | + | chr7_1:5347490-5347509 | Msa1006540:intron | 35.0% | |
| AGAAAAACATGCACCCTAAA+GGG | + | chr7_1:5347491-5347510 | Msa1006540:intron | 35.0% | |
| ATGTCTATAGACGTAACCAA+TGG | + | chr7_1:5347583-5347602 | Msa1006540:intron | 35.0% | |
| TGTCTATAGACGTAACCAAT+GGG | + | chr7_1:5347584-5347603 | Msa1006540:intron | 35.0% | |
| GGGAAAGATTATTCCTTCAT+TGG | + | chr7_1:5347812-5347831 | Msa1006540:intron | 35.0% | |
| ATTTCTCTGGTCCAATAATG+TGG | + | chr7_1:5348174-5348193 | Msa1006540:intron | 35.0% | |
| AGAAAGACCATCCACATTAT+TGG | - | chr7_1:5348188-5348207 | None:intergenic | 35.0% | |
| !!! | GGATGGTCTTTCTTCTTTTT+TGG | + | chr7_1:5348195-5348214 | Msa1006540:intron | 35.0% |
| !!! | CTTTCTTCTTTTTTGGGGTT+TGG | + | chr7_1:5348202-5348221 | Msa1006540:intron | 35.0% |
| ! | TTGAATTTGAGATGTCGTTG+TGG | - | chr7_1:5348246-5348265 | None:intergenic | 35.0% |
| ATGTAGTAGACACACTTCTA+TGG | + | chr7_1:5348281-5348300 | Msa1006540:intron | 35.0% | |
| TGTAGTAGACACACTTCTAT+GGG | + | chr7_1:5348282-5348301 | Msa1006540:intron | 35.0% | |
| !! | GCCATGATTACACTTTTTGT+TGG | + | chr7_1:5348345-5348364 | Msa1006540:intron | 35.0% |
| CTTGAAGCTTGAGTTATTAG+AGG | + | chr7_1:5348372-5348391 | Msa1006540:intron | 35.0% | |
| ! | ATAATTCTGTGGGCTGAATT+TGG | + | chr7_1:5348483-5348502 | Msa1006540:intron | 35.0% |
| ! | GAATTTGGCTTATTTGGAAC+AGG | + | chr7_1:5348498-5348517 | Msa1006540:intron | 35.0% |
| ! | TTTTCAAAATTGCACCTCAC+CGG | - | chr7_1:5346121-5346140 | None:intergenic | 35.0% |
| CAAGCCTTCAATAATCATGA+AGG | + | chr7_1:5348707-5348726 | Msa1006540:intron | 35.0% | |
| ! | CAGATCTAGACAAAGTTGAT+TGG | - | chr7_1:5348808-5348827 | None:intergenic | 35.0% |
| ! | TGCAAGTTTTTCTTCGTCAT+CGG | - | chr7_1:5348947-5348966 | None:intergenic | 35.0% |
| ! | TGTGCATAAGTGTCCATTTT+AGG | - | chr7_1:5348971-5348990 | None:intergenic | 35.0% |
| TAAAATGGACACTTATGCAC+AGG | + | chr7_1:5348970-5348989 | Msa1006540:CDS | 35.0% | |
| AAAATGGACACTTATGCACA+GGG | + | chr7_1:5348971-5348990 | Msa1006540:CDS | 35.0% | |
| GTACAATTCTTCAAGGCTTC+AGG | + | chr7_1:5345392-5345411 | Msa1006540:CDS | 40.0% | |
| ! | TCACGTTTAAAATCTGCGGA+AGG | + | chr7_1:5345960-5345979 | Msa1006540:intron | 40.0% |
| ! | GTTTAAAATCTGCGGAAGGA+AGG | + | chr7_1:5345964-5345983 | Msa1006540:intron | 40.0% |
| TGCGGAAGGAAGGAAAAAAA+TGG | + | chr7_1:5345974-5345993 | Msa1006540:intron | 40.0% | |
| TAGTCCTTCATTCCGTATAG+AGG | + | chr7_1:5346252-5346271 | Msa1006540:intron | 40.0% | |
| AGTCCTTCATTCCGTATAGA+GGG | + | chr7_1:5346253-5346272 | Msa1006540:intron | 40.0% | |
| !!! | ATTGTTTTGAAACTCCTCCC+TGG | - | chr7_1:5346367-5346386 | None:intergenic | 40.0% |
| TGCAAAACACATTGCAAGAG+GGG | + | chr7_1:5346400-5346419 | Msa1006540:intron | 40.0% | |
| GAATTAGTTGGTCCTTGGAT+TGG | - | chr7_1:5346469-5346488 | None:intergenic | 40.0% | |
| ! | GTTTTGCTCCGGTTGTAAAT+AGG | - | chr7_1:5346526-5346545 | None:intergenic | 40.0% |
| ! | CTAGTATAGGTTTGGGATCT+CGG | - | chr7_1:5346611-5346630 | None:intergenic | 40.0% |
| TGACGAGGAAAAGATAAAGG+GGG | - | chr7_1:5347217-5347236 | None:intergenic | 40.0% | |
| GGTTGACGAGGAAAAGATAA+AGG | - | chr7_1:5347220-5347239 | None:intergenic | 40.0% | |
| ! | GCATGTTTTTCTTCGTCATC+CGG | - | chr7_1:5347483-5347502 | None:intergenic | 40.0% |
| GTCTATAGACGTAACCAATG+GGG | + | chr7_1:5347585-5347604 | Msa1006540:intron | 40.0% | |
| !!! | CTTTTTTGGGGTTTGGTTGT+AGG | + | chr7_1:5348209-5348228 | Msa1006540:intron | 40.0% |
| ! | TGGGCTGAATTTGGCTTATT+TGG | + | chr7_1:5348492-5348511 | Msa1006540:intron | 40.0% |
| TCAATTGCATTGAAAGGGGA+AGG | - | chr7_1:5348530-5348549 | None:intergenic | 40.0% | |
| TTGATATATAGACTCCGGTG+AGG | + | chr7_1:5348572-5348591 | Msa1006540:intron | 40.0% | |
| !! | GAAGGCTTGTTATGCAAATC+AGG | - | chr7_1:5348696-5348715 | None:intergenic | 40.0% |
| ! | GCAAGTTTTTCTTCGTCATC+GGG | - | chr7_1:5348946-5348965 | None:intergenic | 40.0% |
| ACTCCCTCTATACGGAATGA+AGG | - | chr7_1:5346259-5346278 | None:intergenic | 45.0% | |
| AGGAGCTTCACAAATCATCC+AGG | + | chr7_1:5346339-5346358 | Msa1006540:intron | 45.0% | |
| TCACAAATCATCCAGGAACC+AGG | + | chr7_1:5346346-5346365 | Msa1006540:intron | 45.0% | |
| CACAAATCATCCAGGAACCA+GGG | + | chr7_1:5346347-5346366 | Msa1006540:intron | 45.0% | |
| !! | ACCTCAAGTTGACCAATCCA+AGG | + | chr7_1:5346454-5346473 | Msa1006540:intron | 45.0% |
| !! | TCCTTGGATTGGTCAACTTG+AGG | - | chr7_1:5346458-5346477 | None:intergenic | 45.0% |
| CTCTCGAATTAGTTGGTCCT+TGG | - | chr7_1:5346474-5346493 | None:intergenic | 45.0% | |
| CAAGGACCAACTAATTCGAG+AGG | + | chr7_1:5346472-5346491 | Msa1006540:intron | 45.0% | |
| GACGAGGAAAAGATAAAGGG+GGG | - | chr7_1:5347216-5347235 | None:intergenic | 45.0% | |
| ATGTAAAGGCTTTGCCCCAT+TGG | - | chr7_1:5347602-5347621 | None:intergenic | 45.0% | |
| TTTCGTGTCTCCATCAAAGC+TGG | + | chr7_1:5347889-5347908 | Msa1006540:intron | 45.0% | |
| GTCCACACATACGAAAGAAG+AGG | + | chr7_1:5347964-5347983 | Msa1006540:intron | 45.0% | |
| AGCCTCTTCTTTCGTATGTG+TGG | - | chr7_1:5347969-5347988 | None:intergenic | 45.0% | |
| CTCTGGTCCAATAATGTGGA+TGG | + | chr7_1:5348178-5348197 | Msa1006540:intron | 45.0% | |
| ATTGCATTGAAAGGGGAAGG+AGG | - | chr7_1:5348527-5348546 | None:intergenic | 45.0% | |
| CATGAAGGGAATGAAAAGGC+TGG | + | chr7_1:5348722-5348741 | Msa1006540:intron | 45.0% | |
| !!! | AATATAATTGAAAATTTTAA+AGG | - | chr7_1:5347646-5347665 | None:intergenic | 5.0% |
| AAATCATCCAGGAACCAGGG+AGG | + | chr7_1:5346350-5346369 | Msa1006540:intron | 50.0% | |
| ATCCCGATATCCACTAGCGA+AGG | + | chr7_1:5346499-5346518 | Msa1006540:intron | 50.0% | |
| TCCCGATATCCACTAGCGAA+GGG | + | chr7_1:5346500-5346519 | Msa1006540:intron | 50.0% | |
| GTAAATAGGCCCTTCGCTAG+TGG | - | chr7_1:5346512-5346531 | None:intergenic | 50.0% | |
| GCGAAGGGCCTATTTACAAC+CGG | + | chr7_1:5346515-5346534 | Msa1006540:intron | 50.0% | |
| TCCATCAAAGCTGGCTGCTA+AGG | + | chr7_1:5347898-5347917 | Msa1006540:intron | 50.0% | |
| ! | TCCTTAGCAGCCAGCTTTGA+TGG | - | chr7_1:5347902-5347921 | None:intergenic | 50.0% |
| TGAAACTCCTCCCTGGTTCC+TGG | - | chr7_1:5346360-5346379 | None:intergenic | 55.0% | |
| ! | GCCCTTCGCTAGTGGATATC+GGG | - | chr7_1:5346504-5346523 | None:intergenic | 55.0% |
| ! | GGCCCTTCGCTAGTGGATAT+CGG | - | chr7_1:5346505-5346524 | None:intergenic | 55.0% |
| AATGCAGGGGACCCCAATGA+AGG | - | chr7_1:5347828-5347847 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 5345348 | 5349009 | 5345348 | ID=Msa1006540;Name=Msa1006540 |
| chr7_1 | mRNA | 5345348 | 5349009 | 5345348 | ID=Msa1006540-mRNA-1;Parent=Msa1006540;Name=Msa1006540-mRNA-1;_AED=0.88;_eAED=1.00;_QI=0|0|0|0.33|1|1|3|0|64 |
| chr7_1 | exon | 5345348 | 5345413 | 5345348 | ID=Msa1006540-mRNA-1:exon:1771;Parent=Msa1006540-mRNA-1 |
| chr7_1 | exon | 5348231 | 5348278 | 5348231 | ID=Msa1006540-mRNA-1:exon:1772;Parent=Msa1006540-mRNA-1 |
| chr7_1 | exon | 5348929 | 5349009 | 5348929 | ID=Msa1006540-mRNA-1:exon:1773;Parent=Msa1006540-mRNA-1 |
| chr7_1 | CDS | 5345348 | 5345413 | 5345348 | ID=Msa1006540-mRNA-1:cds;Parent=Msa1006540-mRNA-1 |
| chr7_1 | CDS | 5348231 | 5348278 | 5348231 | ID=Msa1006540-mRNA-1:cds;Parent=Msa1006540-mRNA-1 |
| chr7_1 | CDS | 5348929 | 5349009 | 5348929 | ID=Msa1006540-mRNA-1:cds;Parent=Msa1006540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
