AlfalfaGEDB | Msa1006540

M. sativa cultivar zhongmu-4 / Msa1006540

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0533430	Msa1006540	0.809662	1.694108e-50	-8.615850e-47
Msa0580610	Msa1006540	0.802024	6.825174e-49	-8.615850e-47
Msa0818010	Msa1006540	0.824303	8.683095e-54	-8.615850e-47
Msa1006270	Msa1006540	0.834091	3.662500e-56	-8.615850e-47
Msa1006360	Msa1006540	0.808176	3.522907e-50	-8.615850e-47
Msa1006540	Msa1136010	0.806018	1.008375e-49	-8.615850e-47

Showing 1 to 6 of 6 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 10 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGACACTTATGCACA+GGG	0.677863	7_1:+5348971	Msa1006540:CDS
AACGACATCTCAAATTCAAA+TGG	0.443543	7_1:+5348247	Msa1006540:CDS
AGCCTTGAAGAATTGTACAT+AGG	0.674056	7_1:-5345387	None:intergenic
ATGGTGAGTGTCATGTTATT+AGG	0.425096	7_1:-5345363	None:intergenic
CAAATTCAAATGGAAGCAAA+TGG	0.501602	7_1:+5348257	Msa1006540:CDS
GTACAATTCTTCAAGGCTTC+AGG	0.327361	7_1:+5345392	Msa1006540:CDS
TAAAATGGACACTTATGCAC+AGG	0.522203	7_1:+5348970	Msa1006540:CDS
TACCTATGTACAATTCTTCA+AGG	0.431580	7_1:+5345385	Msa1006540:CDS
TGAAGAATTGTACATAGGTA+TGG	0.521798	7_1:-5345382	None:intergenic
TTGAATTTGAGATGTCGTTG+TGG	0.678992	7_1:-5348243	None:intergenic

Showing 1 to 10 of 10 entries

Previous1Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAAGAATTGTACATAGGTA+TGG	-	chr7_1:5345385-5345404	None:intergenic	30.0%
TACCTATGTACAATTCTTCA+AGG	+	chr7_1:5345385-5345404	Msa1006540:CDS	30.0%
ATGTATTAGACACACTTCTA+TGG	+	chr7_1:5345485-5345504	Msa1006540:intron	30.0%
TGTATTAGACACACTTCTAT+GGG	+	chr7_1:5345486-5345505	Msa1006540:intron	30.0%
CAAGCCTTTAATAATCATGA+AGG	+	chr7_1:5346308-5346327	Msa1006540:intron	30.0%
TAATCATGAAGGGAATGAAA+AGG	+	chr7_1:5346319-5346338	Msa1006540:intron	30.0%
AGAAAACCAACTCATAATCA+TGG	+	chr7_1:5346629-5346648	Msa1006540:intron	30.0%
ACATTGCTAATGAGAATAAC+AGG	-	chr7_1:5346792-5346811	None:intergenic	30.0%
ACCACGTAAAAAGAACAATT+AGG	+	chr7_1:5347034-5347053	Msa1006540:intron	30.0%
AGCCTTTACATAGAAAGAAA+TGG	+	chr7_1:5347611-5347630	Msa1006540:intron	30.0%

Showing 1 to 10 of 193 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	5345348	5349009	5345348	ID=Msa1006540;Name=Msa1006540
chr7_1	mRNA	5345348	5349009	5345348	ID=Msa1006540-mRNA-1;Parent=Msa1006540;Name=Msa1006540-mRNA-1;_AED=0.88;_eAED=1.00;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|64
chr7_1	exon	5345348	5345413	5345348	ID=Msa1006540-mRNA-1:exon:1771;Parent=Msa1006540-mRNA-1
chr7_1	exon	5348231	5348278	5348231	ID=Msa1006540-mRNA-1:exon:1772;Parent=Msa1006540-mRNA-1
chr7_1	exon	5348929	5349009	5348929	ID=Msa1006540-mRNA-1:exon:1773;Parent=Msa1006540-mRNA-1
chr7_1	CDS	5345348	5345413	5345348	ID=Msa1006540-mRNA-1:cds;Parent=Msa1006540-mRNA-1
chr7_1	CDS	5348231	5348278	5348231	ID=Msa1006540-mRNA-1:cds;Parent=Msa1006540-mRNA-1
chr7_1	CDS	5348929	5349009	5348929	ID=Msa1006540-mRNA-1:cds;Parent=Msa1006540-mRNA-1

Gene Sequence	>Msa1006540 ATGAAAGAAGCAGAGCCTAATAACATGACACTCACCATACCTATGTACAATTCTTCAAGGCTTCAGGAACTCAATCTGCCACAACGACATCTCAAATTCAAATGGAAGCAAATGGAGCGTAAAGTTGACCCGATGACGAAGAAAAACTTGCATCCTAAAATGGACACTTATGCACAGGGCTTTGTGATTGACTAA
Protein sequence	>Msa1006540 MKEAEPNNMTLTIPMYNSSRLQELNLPQRHLKFKWKQMERKVDPMTKKNLHPKMDTYAQGFVID*